17-03-17 18:33:44.218 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:33:44.218 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:33:44.218 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 18:33:44.218 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:44.228 -07 000000462 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:33:44.228 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:33:44.228 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:44.228 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:33:44.228 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:33:44.228 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:33:44.348 -07 000000448 INF: FPGA: Recv YMVTO 154377 870
17-03-17 18:33:44.348 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 116 ms overall
17-03-17 18:33:44.348 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:33:44.348 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 18:33:44.348 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 18:33:46.598 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:46.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:47.348 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:47.348 -07 000000476 INF: FPGA: Recv YRDPOS 154379
17-03-17 18:33:47.358 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:47.358 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:47.368 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:47.368 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 18:33:47.368 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3147 ms
17-03-17 18:33:47.378 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 60° ===================
17-03-17 18:33:47.378 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:33:47.378 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:33:47.378 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:33:47.388 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:33:47.408 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:33:47.408 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-17 18:33:47.418 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:33:47.418 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 60° ===================
17-03-17 18:33:47.418 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:33:47.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:33:47.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:33:47.448 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:33:47.448 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:33:47.448 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:33:47.748 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:33:47.768 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:33:47.768 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:33:47.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:33:47.838 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:33:47.838 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:33:47.938 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:33:47.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:33:47.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:33:47.968 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:33:47.968 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:33:47.968 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:33:48.098 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:33:48.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:33:48.988 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.970374,
17-03-17 18:33:51.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:33:51.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:33:51.608 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 7
17-03-17 18:33:51.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=7, R2=3, Total=10. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=139, R2=144, Total=283. Warn if over 250 bubbles per interval.
17-03-17 18:33:51.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:33:51.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:33:52.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:33:52.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:33:52.198 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:33:52.198 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:33:52.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:33:52.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:33:52.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:33:52.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:33:52.518 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:33:52.518 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:33:52.518 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:33:52.648 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:33:52.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:33:53.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:33:53.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:33:53.138 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:33:53.138 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:33:54.358 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:33:54.358 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:33:54.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:33:54.358 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.012614,
17-03-17 18:33:54.378 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:33:54.378 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:33:54.378 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:33:54.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:33:54.538 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:33:54.538 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:33:54.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:33:54.608 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:33:54.608 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:33:54.708 -07 000000610 INF: =================== Cycle #15, Pumping Reagent CMS (4) ===================
17-03-17 18:33:54.708 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:33:54.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:33:54.738 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:33:54.738 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:33:54.738 -07 000000610 INF: =================== Cycle #15, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:33:54.868 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:33:54.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:33:56.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:33:56.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:33:56.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-17 18:33:56.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=142, R2=147, Total=289. Warn if over 250 bubbles per interval.
17-03-17 18:33:56.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:33:56.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:33:56.828 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:33:56.828 -07 000000610 INF: =================== Cycle #15, Pumping Reagent CMS (4) ===================
17-03-17 18:33:56.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:33:56.988 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:33:56.988 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:33:57.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:33:57.148 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:33:57.148 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:33:57.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:33:57.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:33:57.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:33:57.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:33:57.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:33:57.768 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:33:57.768 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:33:58.988 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:33:58.988 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:33:58.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:33:59.008 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:33:59.008 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:33:59.008 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:33:59.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:33:59.178 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:33:59.178 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:33:59.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:33:59.248 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:33:59.248 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:33:59.348 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:33:59.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:33:59.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:33:59.378 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:33:59.378 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:33:59.378 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:33:59.508 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:33:59.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:33:59.728 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.016692,
17-03-17 18:34:00.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:00.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:00.448 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:34:00.448 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:34:00.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:00.608 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:34:00.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:34:00.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:00.768 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:34:00.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:34:00.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:34:00.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:34:00.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:01.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:01.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:01.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:34:01.388 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:34:01.388 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:34:01.388 -07 000000618 INF: WaitCommand(10000) start
17-03-17 18:34:01.388 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:34:01.608 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:34:01.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=142, R2=149, Total=291. Warn if over 250 bubbles per interval.
17-03-17 18:34:02.608 -07 000000438 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:34:02.608 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 18:34:02.638 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:34:02.638 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:34:02.768 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:34:02.808 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:04.338 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:04.368 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:04.788 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:04.818 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:04.818 -07 000000438 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 18:34:04.818 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:34:04.818 -07 000000438 INF: ===================  ===================
17-03-17 18:34:05.098 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.016692,
17-03-17 18:34:06.608 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:06.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=142, R2=149, Total=291. Warn if over 250 bubbles per interval.
17-03-17 18:34:10.478 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.019446,
17-03-17 18:34:11.398 -07 000000618 INF: WaitCommand(10000) end
17-03-17 18:34:11.398 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:34:11.398 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:34:11.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:11.438 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:34:11.438 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:34:11.438 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:34:11.568 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:34:11.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:11.608 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:11.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=142, R2=149, Total=291. Warn if over 250 bubbles per interval.
17-03-17 18:34:15.848 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.98264,
17-03-17 18:34:16.608 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 18:34:16.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=144, R2=151, Total=295. Warn if over 250 bubbles per interval.
17-03-17 18:34:17.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:17.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:18.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:18.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:18.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:18.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:19.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:19.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:19.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:19.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:19.568 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:34:19.568 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:34:19.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:19.728 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:34:19.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:34:19.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:19.888 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:34:19.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:34:19.888 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:34:20.018 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:34:20.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:20.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:20.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:20.508 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:34:20.508 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:34:21.208 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.978563,
17-03-17 18:34:21.608 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:21.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=144, R2=151, Total=295. Warn if over 250 bubbles per interval.
17-03-17 18:34:21.728 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:34:21.728 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:34:21.728 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:34:21.748 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:34:21.748 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:34:21.748 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:34:21.958 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:34:21.978 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:34:21.978 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:34:22.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:34:22.048 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:34:22.048 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:34:22.148 -07 000000610 INF: =================== Cycle #15, Pumping Reagent IMT (1) ===================
17-03-17 18:34:22.148 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:34:22.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:22.178 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:34:22.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:34:22.178 -07 000000610 INF: =================== Cycle #15, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:34:22.308 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:34:22.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:23.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:23.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:24.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:24.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:24.268 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:34:24.268 -07 000000610 INF: =================== Cycle #15, Pumping Reagent IMT (1) ===================
17-03-17 18:34:24.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:24.428 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:34:24.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:34:24.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:24.588 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:34:24.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:34:24.588 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:34:24.718 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:34:24.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:25.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:25.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:25.208 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:34:25.208 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:34:26.428 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:34:26.428 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:34:26.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:34:26.448 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:34:26.448 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:34:26.448 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:34:26.578 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.999021,
17-03-17 18:34:26.608 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:34:26.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=151, Total=296. Warn if over 250 bubbles per interval.
17-03-17 18:34:26.678 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:34:26.698 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:34:26.698 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:34:26.748 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:34:26.768 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:34:26.768 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:34:26.868 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:34:26.868 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:34:26.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:26.898 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:34:26.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:34:26.898 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:34:27.028 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:34:27.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:27.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:27.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:27.968 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:34:27.968 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:34:28.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:28.128 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:34:28.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:34:28.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:28.288 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:34:28.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:34:28.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:34:28.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:34:28.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:28.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:28.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:28.908 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:34:28.908 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:34:28.908 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 65° ===================
17-03-17 18:34:28.908 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:34:28.908 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:34:28.908 -07 000000448 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:34:28.918 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:34:28.918 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:34:28.918 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 18:34:28.928 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:34:28.928 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 65° ===================
17-03-17 18:34:28.928 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:34:28.928 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:34:31.608 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:34:31.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:34:31.948 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.981281,
17-03-17 18:34:36.608 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:36.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:34:37.318 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.947167,
17-03-17 18:34:41.608 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:41.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:34:42.688 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.986717,
17-03-17 18:34:46.608 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:46.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:34:48.058 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.012614,
17-03-17 18:34:51.608 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:51.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:34:53.428 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.018051,
17-03-17 18:34:56.608 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:34:56.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:34:58.798 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.030322,
17-03-17 18:34:58.938 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:34:58.938 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:34:58.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:34:59.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:59.068 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:34:59.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:34:59.068 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:34:59.198 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:34:59.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:34:59.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:34:59.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:34:59.808 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 18:34:59.808 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:34:59.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:34:59.968 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:34:59.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:35:00.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:00.128 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:35:00.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:35:00.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:35:00.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:35:00.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:00.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:00.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:00.748 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:35:00.748 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:35:00.748 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:35:00.748 -07 000000482 INF: WaitCommand(30000) start
17-03-17 18:35:00.748 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:35:01.608 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:01.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:35:01.968 -07 000000512 INF: AsyncDelayTimer waited 1213ms
17-03-17 18:35:01.968 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-17 18:35:01.998 -07 000000512 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:35:01.998 -07 000000512 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:35:02.128 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:35:02.168 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:04.168 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.0344,
17-03-17 18:35:04.508 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:04.538 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:04.958 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:04.988 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:04.988 -07 000000512 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:35:04.988 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:35:04.988 -07 000000512 INF: ===================  ===================
17-03-17 18:35:06.608 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:06.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:35:09.548 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.02213,
17-03-17 18:35:11.608 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:11.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:35:14.908 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.994908,
17-03-17 18:35:16.608 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:16.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:35:20.278 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.008536,
17-03-17 18:35:21.608 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:21.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:35:25.658 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.012614,
17-03-17 18:35:26.608 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:26.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:35:30.758 -07 000000482 INF: WaitCommand(30000) end
17-03-17 18:35:30.758 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 22° ===================
17-03-17 18:35:30.768 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:35:30.768 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:35:30.768 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:35:30.778 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:35:30.778 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:35:30.778 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 18:35:30.788 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:30.788 -07 000000610 INF: =================== Cycle #15, Flow Cell Temp 22° ===================
17-03-17 18:35:30.788 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:35:30.788 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:35:30.788 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:35:30.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:30.818 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:35:30.818 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:35:30.818 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:35:30.948 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:35:30.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:31.028 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.999021,
17-03-17 18:35:31.608 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:31.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=145, R2=152, Total=297. Warn if over 250 bubbles per interval.
17-03-17 18:35:34.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:34.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:34.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:34.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:35.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:35.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:35.048 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:35:35.048 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:35:35.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:35.208 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:35:35.208 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:35:35.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:35.368 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:35:35.368 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:35:35.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:35:35.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:35:35.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:35.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:35.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:35.988 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:35:35.988 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:35:36.388 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.988112,
17-03-17 18:35:36.608 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 18:35:36.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:35:37.208 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:35:37.208 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:35:37.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:35:37.228 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:35:37.228 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:35:37.228 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:35:37.378 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:35:37.398 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:35:37.398 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:35:37.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:35:37.468 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:35:37.468 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:35:37.568 -07 000000610 INF: =================== Cycle #15, Pumping Reagent USM (2) ===================
17-03-17 18:35:37.568 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:35:37.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:37.598 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:35:37.598 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:35:37.598 -07 000000610 INF: =================== Cycle #15, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:35:37.728 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:35:37.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:39.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:39.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:39.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:39.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:39.688 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:35:39.688 -07 000000610 INF: =================== Cycle #15, Pumping Reagent USM (2) ===================
17-03-17 18:35:39.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:39.848 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:35:39.848 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:35:39.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:40.008 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:35:40.008 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:35:40.008 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:35:40.138 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:35:40.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:40.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:40.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:40.628 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:35:40.628 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:35:41.608 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:41.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:35:41.758 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.994908,
17-03-17 18:35:41.848 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:35:41.848 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:35:41.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:35:41.868 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:35:41.868 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:35:41.868 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:35:42.018 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:35:42.038 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:35:42.038 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:35:42.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:35:42.108 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:35:42.108 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:35:42.208 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:35:42.208 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:35:42.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:42.238 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:35:42.238 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:35:42.238 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:35:42.368 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:35:42.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:43.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:43.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:43.308 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:35:43.308 -07 000000610 INF: =================== Cycle #15, Pumping Reagent PR2 (3) ===================
17-03-17 18:35:43.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:43.468 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:35:43.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:35:43.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:35:43.628 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:35:43.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:35:43.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:35:43.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:35:43.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:44.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:44.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:44.248 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:35:44.248 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:35:44.248 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:35:44.248 -07 000000478 INF: WaitCommand(10000) start
17-03-17 18:35:44.248 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:35:45.468 -07 000000618 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:35:45.468 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-17 18:35:45.498 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:35:45.498 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:35:45.628 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:35:45.668 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:46.608 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:46.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:35:47.128 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.990831,
17-03-17 18:35:47.198 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:47.228 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:35:47.648 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 18:35:47.678 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:35:47.678 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:35:47.678 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:35:47.678 -07 000000618 INF: ===================  ===================
17-03-17 18:35:51.608 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:51.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:35:52.498 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.994908,
17-03-17 18:35:54.258 -07 000000478 INF: WaitCommand(10000) end
17-03-17 18:35:54.258 -07 000000610 INF: =================== Cycle #15, Imaging ===================
17-03-17 18:35:54.258 -07 000000610 INF: Imaging Cycle 15: ScanTilesCommand Cycle 15 time start.
17-03-17 18:35:54.268 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:35:54.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:35:54.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:35:54.288 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:35:54.288 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:35:54.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:35:54.608 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:35:54.608 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:35:54.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:35:54.678 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:35:54.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:35:54.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:35:54.678 -07 000000608 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:35:54.678 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:35:54.678 -07 000000608 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:35:54.678 -07 000000438 INF: FPGA: Recv EXLED1ON 
17-03-17 18:35:54.688 -07 000000608 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:35:54.688 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:35:54.688 -07 000000623 INF: FPGA: Recv EXLED1ADCR 23296
17-03-17 18:35:54.698 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:54.698 -07 000000608 INF: RedLED: Using Red data: Photodiode ADC 23296 --> 7.5 mW (old method), or 206.4 mW (new method). Difference = 198.9 mW
17-03-17 18:35:54.698 -07 000000608 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:35:54.698 -07 000000438 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:35:54.708 -07 000000608 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:35:54.708 -07 000000608 INF: RedLED: LED was on for 19 ms
17-03-17 18:35:54.708 -07 000000608 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 18:35:54.708 -07 000000608 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:35:54.708 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:35:54.708 -07 000000608 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:35:54.708 -07 000000593 INF: FPGA: Recv EXLED2ON 
17-03-17 18:35:54.718 -07 000000608 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:35:54.718 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:35:54.718 -07 000000462 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 18:35:54.728 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:54.728 -07 000000608 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 18:35:54.728 -07 000000608 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:35:54.728 -07 000000476 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:35:54.738 -07 000000608 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:54.738 -07 000000608 INF: GreenLED: LED was on for 20 ms
17-03-17 18:35:54.738 -07 000000608 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 18:35:54.738 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:35:54.738 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 18:35:54.748 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:35:54.748 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:35:55.248 -07 000000512 INF: FPGA: Recv EMOUT
17-03-17 18:35:55.248 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 503 ms overall
17-03-17 18:35:55.248 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:35:55.248 -07 000000431 INF: FPGA: Recv EMCUR 
17-03-17 18:35:55.258 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:35:55.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:35:55.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127177986366394. ------
17-03-17 18:35:55.258 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17919 mm
17-03-17 18:35:55.258 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:35:55.258 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:35:55.258 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:35:55.258 -07 000000448 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 18:35:55.258 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 39144, sync = True, waitForSettling = False)
17-03-17 18:35:55.258 -07 000000618 INF: Z Motor: Moving to -0.179190 mm, started at -0.127178 mm, distance = -52.01 um
17-03-17 18:35:55.268 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:35:55.268 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:35:55.268 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:35:55.268 -07 000000438 INF: FPGA: Recv YRDPOS 154380
17-03-17 18:35:55.278 -07 000000618 INF: FPGA: Xmit ZDACW 39144\n [Z Motor]
17-03-17 18:35:55.278 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:35:55.278 -07 000000448 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:35:55.278 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:35:55.278 -07 000000448 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:35:55.278 -07 000000448 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:35:55.288 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:35:55.288 -07 000000618 INF: FPGA: 'ZDACW 39144' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:35:55.298 -07 000000448 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:35:55.308 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:35:55.308 -07 000000593 INF: FPGA: Recv ZDACR 39144
17-03-17 18:35:55.318 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:35:55.318 -07 000000618 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:35:55.488 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:35:55.488 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:35:56.608 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:35:56.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:35:56.978 -07 000000462 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 18:35:56.978 -07 000000448 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1703 ms overall
17-03-17 18:35:56.978 -07 000000448 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:35:56.978 -07 000000448 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:35:56.978 -07 000000448 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 18:35:57.868 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.985358,
17-03-17 18:35:59.828 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:35:59.828 -07 000000623 INF: FPGA: Recv YRDPOS 122698
17-03-17 18:35:59.838 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:35:59.838 -07 000000448 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:35:59.858 -07 000000448 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:35:59.858 -07 000000448 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 18:35:59.858 -07 000000448 INF: Y Motor: Moved to 59.9111 after 4592 ms
17-03-17 18:35:59.858 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179190 mm (DAC = 39144)
17-03-17 18:35:59.858 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.858 -07 000000478 INF: FPGA: Recv ZSGSRD 37185
17-03-17 18:35:59.868 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:35:59.868 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.868 -07 000000623 INF: FPGA: Recv ZSGSRD 37181
17-03-17 18:35:59.878 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.878 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.878 -07 000000462 INF: FPGA: Recv ZSGSRD 37187
17-03-17 18:35:59.888 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.888 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.888 -07 000000429 INF: FPGA: Recv ZSGSRD 37183
17-03-17 18:35:59.898 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.898 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.898 -07 000000424 INF: FPGA: Recv ZSGSRD 37177
17-03-17 18:35:59.908 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.908 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.908 -07 000000618 INF: FPGA: Recv ZSGSRD 37188
17-03-17 18:35:59.918 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.918 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.918 -07 000000480 INF: FPGA: Recv ZSGSRD 37186
17-03-17 18:35:59.928 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.928 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.928 -07 000000429 INF: FPGA: Recv ZSGSRD 37183
17-03-17 18:35:59.938 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.938 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.938 -07 000000608 INF: FPGA: Recv ZSGSRD 37183
17-03-17 18:35:59.948 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.948 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:35:59.948 -07 000000618 INF: FPGA: Recv ZSGSRD 37186
17-03-17 18:35:59.958 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.958 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:35:59.958 -07 000000501 INF: FPGA: Recv ZPIEZORD 33542
17-03-17 18:35:59.968 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:35:59.968 -07 000000012 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.973 V. Piezo Error = -8.1 V.
17-03-17 18:35:59.968 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37184 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37184 (-178.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37177 (-178.3 uncal um), Max = 37188 (-178.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:35:59.968 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37184, posNoise = 4, negNoise = 7
17-03-17 18:35:59.968 -07 000000012 INF: Z Motor: After move to -0.179190, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:35:59.968 -07 000000012 INF: Z Motor: Settle wait time = 4597 ms, measure time = 104 ms (allowed 150 ms), total time = 4701 ms
17-03-17 18:35:59.968 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:00.018 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 18:36:00.018 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:00.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:00.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:00.018 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:00.018 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:00.018 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:00.018 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:00.018 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:00.018 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:36:00.048 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 18:36:00.048 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:00.048 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:00.048 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:00.058 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:36:00.058 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 38 ms.
17-03-17 18:36:00.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:00.108 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:00.308 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:00.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:00.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:00.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 18:36:00.348 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:00.348 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:00.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:36:00.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:36:00.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:00.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:00.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:36:00.448 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:00.448 -07 000000593 INF: Image SNR check: start
17-03-17 18:36:00.448 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:00.458 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:00.458 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:00.458 -07 000000593 INF: Image SNR check: pass  [peak (Max-Min)=73.21]
17-03-17 18:36:00.458 -07 000000593 INF: Autofocus start
17-03-17 18:36:00.458 -07 000000593 INF: MeasureProfile start
17-03-17 18:36:00.478 -07 000000593 INF: MeasureProfile done
17-03-17 18:36:00.478 -07 000000593 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:36:00.478 -07 000000593 INF: Autofocus finished
17-03-17 18:36:00.658 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:00.658 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:00.658 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179201256290374. ----------
17-03-17 18:36:00.658 -07 000000610 INF: Cycle	15	Tile	1	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:00.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37676, sync = True, waitForSettling = True)
17-03-17 18:36:00.668 -07 000000610 INF: Z Motor: Moving to -0.172470 mm, started at -0.179201 mm, distance = 6.73 um
17-03-17 18:36:00.668 -07 000000610 INF: FPGA: Xmit ZDACW 37676\n [Z Motor]
17-03-17 18:36:00.668 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:36:00.678 -07 000000610 INF: FPGA: 'ZDACW 37676' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:00.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:00.678 -07 000000438 INF: FPGA: Recv ZDACR 37676
17-03-17 18:36:00.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:00.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.838 -07 000000512 INF: FPGA: Recv ZSGSRD 36134
17-03-17 18:36:00.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:00.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36139
17-03-17 18:36:00.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.858 -07 000000608 INF: FPGA: Recv ZSGSRD 36137
17-03-17 18:36:00.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.868 -07 000000512 INF: FPGA: Recv ZSGSRD 36140
17-03-17 18:36:00.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.878 -07 000000431 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:36:00.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.888 -07 000000623 INF: FPGA: Recv ZSGSRD 36140
17-03-17 18:36:00.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.898 -07 000000608 INF: FPGA: Recv ZSGSRD 36134
17-03-17 18:36:00.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.908 -07 000000438 INF: FPGA: Recv ZSGSRD 36140
17-03-17 18:36:00.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.918 -07 000000415 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:36:00.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:00.928 -07 000000431 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:36:00.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:00.938 -07 000000623 INF: FPGA: Recv ZPIEZORD 32135
17-03-17 18:36:00.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:00.948 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.8 V.
17-03-17 18:36:00.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36137 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36136 (-171.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36134 (-171.6 uncal um), Max = 36140 (-171.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:36:00.948 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36137, posNoise = 3, negNoise = 3
17-03-17 18:36:00.948 -07 000000610 INF: Z Motor: After move to -0.172470, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:00.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:36:00.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:00.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:00.948 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:00.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:00.948 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:00.948 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:00.948 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:00.948 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:00.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:00.948 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:00.948 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:36:00.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:00.958 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:00.958 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:00.968 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:36:00.968 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:36:00.968 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 18:36:00.968 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:00.978 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:36:00.978 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:00.978 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:36:00.978 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 18:36:00.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37853 150\n [Camera]
17-03-17 18:36:01.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:01.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:36:01.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:36:01.578 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:01.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:36:01.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:36:01.588 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:01.708 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:01.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:01.708 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:01.708 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:01.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:36:01.708 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:36:01.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37853 779
17-03-17 18:36:01.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:02.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:36:02.088 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:36:02.088 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:02.088 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:36:02.088 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:36:02.088 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:02.088 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:02.098 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:02.098 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 18:36:02.098 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 18:36:02.108 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:02.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:02.108 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:02.108 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:02.108 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:02.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:36:02.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:02.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:02.118 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:02.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2313256664, 0x0, 418435064) start.
17-03-17 18:36:02.298 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:02.298 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:02.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37853 150' command took 2 ms to send, 1308 ms to get response, and 1318 ms overall
17-03-17 18:36:02.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:02.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172475106177951. ------
17-03-17 18:36:02.308 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:02.308 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17875 mm
17-03-17 18:36:02.308 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:02.308 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:02.308 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 39049, sync = True, waitForSettling = False)
17-03-17 18:36:02.308 -07 000000512 INF: Z Motor: Moving to -0.178755 mm, started at -0.172475 mm, distance = -6.28 um
17-03-17 18:36:02.308 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:36:02.308 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 18:36:02.318 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:36:02.318 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:02.318 -07 000000431 INF: FPGA: Recv YRDPOS 122698
17-03-17 18:36:02.328 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:02.328 -07 000000438 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:02.328 -07 000000512 INF: FPGA: Xmit ZDACW 39049\n [Z Motor]
17-03-17 18:36:02.328 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:02.328 -07 000000438 INF: Y Motor: Moving 1330 steps2
17-03-17 18:36:02.328 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:36:02.338 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:02.338 -07 000000512 INF: FPGA: 'ZDACW 39049' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:36:02.348 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:02.358 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:02.358 -07 000000608 INF: FPGA: Recv ZDACR 39049
17-03-17 18:36:02.368 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:02.368 -07 000000512 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:36:02.518 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:36:02.518 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:36:02.518 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:02.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2313256664, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:36:02.518 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:02.518 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:36:02.518 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:36:02.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:02.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:02.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:36:02.538 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:02.538 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:36:02.718 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:36:02.718 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:36:02.748 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:02.748 -07 000000415 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:36:02.758 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:02.758 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:02.758 -07 000000438 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 18:36:02.758 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 18:36:03.238 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.011254,
17-03-17 18:36:03.708 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:03.708 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:36:03.718 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:03.718 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:03.738 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:03.738 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:03.738 -07 000000438 INF: Y Motor: Moved to 60.7329 after 1422 ms (table move)
17-03-17 18:36:03.738 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178755 mm (DAC = 39049)
17-03-17 18:36:03.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.738 -07 000000415 INF: FPGA: Recv ZSGSRD 37123
17-03-17 18:36:03.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:36:03.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.748 -07 000000512 INF: FPGA: Recv ZSGSRD 37106
17-03-17 18:36:03.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.758 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.758 -07 000000478 INF: FPGA: Recv ZSGSRD 37116
17-03-17 18:36:03.768 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.768 -07 000000431 INF: FPGA: Recv ZSGSRD 37110
17-03-17 18:36:03.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.778 -07 000000415 INF: FPGA: Recv ZSGSRD 37109
17-03-17 18:36:03.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.788 -07 000000512 INF: FPGA: Recv ZSGSRD 37124
17-03-17 18:36:03.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.798 -07 000000462 INF: FPGA: Recv ZSGSRD 37118
17-03-17 18:36:03.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.808 -07 000000431 INF: FPGA: Recv ZSGSRD 37116
17-03-17 18:36:03.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.818 -07 000000424 INF: FPGA: Recv ZSGSRD 37109
17-03-17 18:36:03.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:03.828 -07 000000478 INF: FPGA: Recv ZSGSRD 37113
17-03-17 18:36:03.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.838 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:03.838 -07 000000462 INF: FPGA: Recv ZPIEZORD 33427
17-03-17 18:36:03.848 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:03.848 -07 000000501 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -8.2 V.
17-03-17 18:36:03.848 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37114 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37114 (-177.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37106 (-177.8 uncal um), Max = 37124 (-177.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:36:03.848 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37114, posNoise = 10, negNoise = 8
17-03-17 18:36:03.848 -07 000000501 INF: Z Motor: After move to -0.178755, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:03.848 -07 000000501 INF: Z Motor: Settle wait time = 1427 ms, measure time = 104 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:36:03.848 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:03.898 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:36:03.898 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:03.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:03.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:03.898 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:03.898 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:03.898 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:03.898 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:03.898 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:03.908 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:03.908 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:03.908 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:03.908 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:36:03.908 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:36:03.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:03.958 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:04.158 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:04.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:04.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:04.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 18:36:04.198 -07 000000623 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:36:04.198 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:04.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:36:04.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:36:04.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:04.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:04.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:36:04.398 -07 000000618 INF: Autofocus start
17-03-17 18:36:04.398 -07 000000618 INF: MeasureProfile start
17-03-17 18:36:04.398 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:04.398 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:04.408 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:04.408 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:04.408 -07 000000618 INF: MeasureProfile done
17-03-17 18:36:04.408 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:36:04.408 -07 000000618 INF: Autofocus finished
17-03-17 18:36:04.608 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:04.608 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:04.608 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178751561440451. ----------
17-03-17 18:36:04.608 -07 000000610 INF: Cycle	15	Tile	2	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:04.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37582, sync = True, waitForSettling = True)
17-03-17 18:36:04.618 -07 000000610 INF: Z Motor: Moving to -0.172039 mm, started at -0.178752 mm, distance = 6.71 um
17-03-17 18:36:04.618 -07 000000610 INF: FPGA: Xmit ZDACW 37582\n [Z Motor]
17-03-17 18:36:04.618 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:36:04.628 -07 000000610 INF: FPGA: 'ZDACW 37582' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:04.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:04.628 -07 000000462 INF: FPGA: Recv ZDACR 37582
17-03-17 18:36:04.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:04.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.788 -07 000000448 INF: FPGA: Recv ZSGSRD 36072
17-03-17 18:36:04.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:04.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.798 -07 000000431 INF: FPGA: Recv ZSGSRD 36072
17-03-17 18:36:04.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.808 -07 000000429 INF: FPGA: Recv ZSGSRD 36076
17-03-17 18:36:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.818 -07 000000476 INF: FPGA: Recv ZSGSRD 36069
17-03-17 18:36:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.828 -07 000000618 INF: FPGA: Recv ZSGSRD 36065
17-03-17 18:36:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.838 -07 000000512 INF: FPGA: Recv ZSGSRD 36079
17-03-17 18:36:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.848 -07 000000431 INF: FPGA: Recv ZSGSRD 36073
17-03-17 18:36:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.858 -07 000000478 INF: FPGA: Recv ZSGSRD 36072
17-03-17 18:36:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.868 -07 000000476 INF: FPGA: Recv ZSGSRD 36067
17-03-17 18:36:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:04.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36069
17-03-17 18:36:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:04.888 -07 000000512 INF: FPGA: Recv ZPIEZORD 32017
17-03-17 18:36:04.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:04.898 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.9 V.
17-03-17 18:36:04.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36071 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36072 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36065 (-171.1 uncal um), Max = 36079 (-171.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:36:04.898 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36071, posNoise = 8, negNoise = 6
17-03-17 18:36:04.898 -07 000000610 INF: Z Motor: After move to -0.172039, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:04.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:36:04.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:04.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:04.898 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:04.898 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:04.898 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:04.898 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:04.898 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:04.898 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:04.898 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:04.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:04.898 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:04.898 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:04.908 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:04.908 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:04.908 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:04.908 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:04.918 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:36:04.918 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:36:04.918 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:36:04.918 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:36:04.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37758 150\n [Camera]
17-03-17 18:36:05.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:05.518 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:05.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:05.518 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:05.518 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:05.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) start.
17-03-17 18:36:05.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:05.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:05.518 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:05.518 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:05.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:36:05.708 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37758 779
17-03-17 18:36:05.858 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:05.898 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:36:05.898 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:36:05.898 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:05.908 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:06.018 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) end. Duration was 502 ms.
17-03-17 18:36:06.018 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 18:36:06.018 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:06.028 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:06.028 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 18:36:06.028 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 18:36:06.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:06.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:06.048 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:06.048 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:06.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:06.048 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:06.048 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:06.048 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:36:06.058 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:06.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:36:06.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:06.238 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:06.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37758 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:36:06.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:06.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172051108176594. ------
17-03-17 18:36:06.248 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17866 mm
17-03-17 18:36:06.248 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:06.248 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:06.248 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:06.248 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:36:06.248 -07 000000482 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 18:36:06.248 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 39028, sync = True, waitForSettling = False)
17-03-17 18:36:06.248 -07 000000608 INF: Z Motor: Moving to -0.178659 mm, started at -0.172051 mm, distance = -6.61 um
17-03-17 18:36:06.258 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:06.258 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:06.258 -07 000000623 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:36:06.268 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:36:06.268 -07 000000482 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:06.268 -07 000000608 INF: FPGA: Xmit ZDACW 39028\n [Z Motor]
17-03-17 18:36:06.268 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:36:06.268 -07 000000482 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:06.268 -07 000000482 INF: Y Motor: Moving 1343 steps-20
17-03-17 18:36:06.278 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:06.278 -07 000000608 INF: FPGA: 'ZDACW 39028' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:36:06.288 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:06.298 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:06.298 -07 000000476 INF: FPGA: Recv ZDACR 39028
17-03-17 18:36:06.308 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:06.308 -07 000000608 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:36:06.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:36:06.428 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:36:06.428 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:06.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:36:06.428 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:36:06.428 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:06.438 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:06.438 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:06.438 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:36:06.438 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:36:06.478 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:06.478 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 18:36:06.608 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:06.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:06.658 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:36:06.658 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:36:06.698 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:06.698 -07 000000618 INF: FPGA: Recv YRDPOS 126082
17-03-17 18:36:06.708 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:06.708 -07 000000482 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:06.708 -07 000000482 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:36:06.708 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 18:36:07.658 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:07.658 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:36:07.668 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.668 -07 000000482 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:07.688 -07 000000482 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:07.688 -07 000000482 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:36:07.688 -07 000000482 INF: Y Motor: Moved to 61.5640 after 1434 ms (table move)
17-03-17 18:36:07.688 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178659 mm (DAC = 39028)
17-03-17 18:36:07.688 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.688 -07 000000623 INF: FPGA: Recv ZSGSRD 37100
17-03-17 18:36:07.698 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:07.698 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.698 -07 000000480 INF: FPGA: Recv ZSGSRD 37096
17-03-17 18:36:07.708 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.708 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.708 -07 000000438 INF: FPGA: Recv ZSGSRD 37098
17-03-17 18:36:07.718 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.718 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.718 -07 000000012 INF: FPGA: Recv ZSGSRD 37097
17-03-17 18:36:07.728 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.728 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.728 -07 000000429 INF: FPGA: Recv ZSGSRD 37105
17-03-17 18:36:07.738 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.738 -07 000000431 INF: FPGA: Recv ZSGSRD 37103
17-03-17 18:36:07.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.748 -07 000000438 INF: FPGA: Recv ZSGSRD 37101
17-03-17 18:36:07.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.758 -07 000000482 INF: FPGA: Recv ZSGSRD 37106
17-03-17 18:36:07.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.768 -07 000000623 INF: FPGA: Recv ZSGSRD 37095
17-03-17 18:36:07.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:07.778 -07 000000478 INF: FPGA: Recv ZSGSRD 37102
17-03-17 18:36:07.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.788 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:07.788 -07 000000438 INF: FPGA: Recv ZPIEZORD 33418
17-03-17 18:36:07.798 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:07.798 -07 000000462 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.955 V. Piezo Error = -8.2 V.
17-03-17 18:36:07.798 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37100 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37100 (-177.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37095 (-177.7 uncal um), Max = 37106 (-177.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:07.798 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37100, posNoise = 6, negNoise = 5
17-03-17 18:36:07.798 -07 000000462 INF: Z Motor: After move to -0.178659, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:07.798 -07 000000462 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:36:07.798 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:07.848 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:36:07.848 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:07.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:07.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:07.848 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:07.848 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:07.848 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:07.848 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:07.848 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:07.848 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:07.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:07.858 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:07.858 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:36:07.858 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:36:07.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:07.908 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:08.108 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:08.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:08.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:08.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:36:08.148 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:08.148 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:08.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:36:08.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:36:08.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:08.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:08.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 18:36:08.248 -07 000000448 INF: Autofocus start
17-03-17 18:36:08.248 -07 000000448 INF: MeasureProfile start
17-03-17 18:36:08.248 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:08.248 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:08.258 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:08.258 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:08.258 -07 000000448 INF: MeasureProfile done
17-03-17 18:36:08.258 -07 000000448 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:36:08.258 -07 000000448 INF: Autofocus finished
17-03-17 18:36:08.458 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:08.458 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:08.458 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178661622470466. ----------
17-03-17 18:36:08.468 -07 000000610 INF: Cycle	15	Tile	3	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:08.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37525, sync = True, waitForSettling = True)
17-03-17 18:36:08.468 -07 000000610 INF: Z Motor: Moving to -0.171778 mm, started at -0.178662 mm, distance = 6.88 um
17-03-17 18:36:08.468 -07 000000610 INF: FPGA: Xmit ZDACW 37525\n [Z Motor]
17-03-17 18:36:08.468 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:36:08.478 -07 000000610 INF: FPGA: 'ZDACW 37525' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:08.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:08.478 -07 000000478 INF: FPGA: Recv ZDACR 37525
17-03-17 18:36:08.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:08.608 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.016692,
17-03-17 18:36:08.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.638 -07 000000462 INF: FPGA: Recv ZSGSRD 36030
17-03-17 18:36:08.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.648 -07 000000476 INF: FPGA: Recv ZSGSRD 36030
17-03-17 18:36:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.678 -07 000000438 INF: FPGA: Recv ZSGSRD 36026
17-03-17 18:36:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.688 -07 000000482 INF: FPGA: Recv ZSGSRD 36032
17-03-17 18:36:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.698 -07 000000618 INF: FPGA: Recv ZSGSRD 36030
17-03-17 18:36:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.708 -07 000000012 INF: FPGA: Recv ZSGSRD 36035
17-03-17 18:36:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.718 -07 000000480 INF: FPGA: Recv ZSGSRD 36025
17-03-17 18:36:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.728 -07 000000429 INF: FPGA: Recv ZSGSRD 36031
17-03-17 18:36:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.738 -07 000000482 INF: FPGA: Recv ZSGSRD 36033
17-03-17 18:36:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:08.748 -07 000000618 INF: FPGA: Recv ZSGSRD 36032
17-03-17 18:36:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:08.758 -07 000000478 INF: FPGA: Recv ZPIEZORD 31948
17-03-17 18:36:08.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:08.768 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -9.0 V.
17-03-17 18:36:08.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36030 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36030 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36025 (-170.9 uncal um), Max = 36035 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:08.768 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36030, posNoise = 5, negNoise = 5
17-03-17 18:36:08.768 -07 000000610 INF: Z Motor: After move to -0.171778, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:08.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 18:36:08.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:08.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:08.768 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:08.768 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:08.768 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:08.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:08.768 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:08.768 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:08.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:08.768 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:08.768 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:08.768 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:08.768 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:08.768 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:08.778 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:08.778 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:08.788 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:36:08.788 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:36:08.788 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:36:08.788 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:36:08.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37702 150\n [Camera]
17-03-17 18:36:08.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:09.388 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:09.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:09.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:09.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:09.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:36:09.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:09.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:09.398 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:09.398 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:09.398 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) start.
17-03-17 18:36:09.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37702 779
17-03-17 18:36:09.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:09.788 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:36:09.788 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:36:09.788 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:09.798 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:36:09.798 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:09.798 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:36:09.798 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:36:09.798 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:09.798 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:09.808 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:36:09.918 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:09.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:09.918 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:10.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:10.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:10.028 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:10.028 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:10.028 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1132859552, 0x0, 391868352) start.
17-03-17 18:36:10.038 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:10.038 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:10.108 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:36:10.118 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:10.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37702 150' command took 2 ms to send, 1310 ms to get response, and 1321 ms overall
17-03-17 18:36:10.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:10.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171787715478782. ------
17-03-17 18:36:10.118 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:10.118 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17792 mm
17-03-17 18:36:10.118 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:10.118 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:10.128 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:36:10.128 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:10.128 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:36:10.128 -07 000000431 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 18:36:10.128 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38866, sync = True, waitForSettling = False)
17-03-17 18:36:10.128 -07 000000482 INF: Z Motor: Moving to -0.177917 mm, started at -0.171788 mm, distance = -6.13 um
17-03-17 18:36:10.138 -07 000000482 INF: FPGA: Xmit ZDACW 38866\n [Z Motor]
17-03-17 18:36:10.138 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:36:10.148 -07 000000482 INF: FPGA: 'ZDACW 38866' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:36:10.148 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:10.148 -07 000000476 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:36:10.158 -07 000000431 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:10.158 -07 000000431 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:10.158 -07 000000431 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:10.158 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:10.158 -07 000000431 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:36:10.158 -07 000000501 INF: FPGA: Recv ZDACR 38866
17-03-17 18:36:10.168 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:10.168 -07 000000482 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:36:10.168 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:10.328 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:10.328 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:10.418 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:36:10.418 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:36:10.418 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:10.418 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1132859552, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:36:10.418 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:36:10.418 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:10.418 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:10.418 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:10.418 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 18:36:10.428 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:36:10.538 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:36:10.538 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 18:36:10.588 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:10.588 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:36:10.598 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:10.598 -07 000000431 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:10.598 -07 000000431 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:36:10.598 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-17 18:36:11.548 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:11.548 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:36:11.558 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.558 -07 000000431 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:11.568 -07 000000431 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:11.568 -07 000000431 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:11.568 -07 000000431 INF: Y Motor: Moved to 62.3955 after 1448 ms (table move)
17-03-17 18:36:11.578 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177917 mm (DAC = 38866)
17-03-17 18:36:11.578 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.578 -07 000000501 INF: FPGA: Recv ZSGSRD 36987
17-03-17 18:36:11.588 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:11.588 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.588 -07 000000476 INF: FPGA: Recv ZSGSRD 36989
17-03-17 18:36:11.598 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.598 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:36:11.608 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.608 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.608 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:11.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:11.608 -07 000000482 INF: FPGA: Recv ZSGSRD 36983
17-03-17 18:36:11.618 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:11.618 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.618 -07 000000608 INF: FPGA: Recv ZSGSRD 36984
17-03-17 18:36:11.628 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.628 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.628 -07 000000438 INF: FPGA: Recv ZSGSRD 36984
17-03-17 18:36:11.638 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.638 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.638 -07 000000478 INF: FPGA: Recv ZSGSRD 36984
17-03-17 18:36:11.648 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.648 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.648 -07 000000415 INF: FPGA: Recv ZSGSRD 36981
17-03-17 18:36:11.658 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.658 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.658 -07 000000429 INF: FPGA: Recv ZSGSRD 36986
17-03-17 18:36:11.668 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.668 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:11.668 -07 000000424 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:36:11.678 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.678 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:11.678 -07 000000431 INF: FPGA: Recv ZPIEZORD 33253
17-03-17 18:36:11.688 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:11.688 -07 000000480 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.3 V.
17-03-17 18:36:11.688 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36986 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36985 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36981 (-177.0 uncal um), Max = 36990 (-177.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:11.688 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36986, posNoise = 4, negNoise = 5
17-03-17 18:36:11.688 -07 000000480 INF: Z Motor: After move to -0.177917, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:11.688 -07 000000480 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-17 18:36:11.688 -07 000000480 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:11.738 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 18:36:11.738 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:11.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:11.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:11.738 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:11.738 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:11.738 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:11.738 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:11.738 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:11.738 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:11.748 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:11.748 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:11.758 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:36:11.758 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:36:11.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:11.808 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:36:11.998 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:36:11.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:36:12.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:12.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:36:12.038 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:12.038 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:12.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:36:12.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:36:12.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:12.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:12.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:36:12.138 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:12.138 -07 000000623 INF: Autofocus start
17-03-17 18:36:12.138 -07 000000623 INF: MeasureProfile start
17-03-17 18:36:12.138 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:12.148 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:12.148 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:12.148 -07 000000623 INF: MeasureProfile done
17-03-17 18:36:12.148 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:36:12.148 -07 000000623 INF: Autofocus finished
17-03-17 18:36:12.348 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:12.348 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:12.348 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177929262286306. ----------
17-03-17 18:36:12.348 -07 000000610 INF: Cycle	15	Tile	4	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:12.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37399, sync = True, waitForSettling = True)
17-03-17 18:36:12.358 -07 000000610 INF: Z Motor: Moving to -0.171202 mm, started at -0.177929 mm, distance = 6.73 um
17-03-17 18:36:12.358 -07 000000610 INF: FPGA: Xmit ZDACW 37399\n [Z Motor]
17-03-17 18:36:12.358 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:36:12.368 -07 000000610 INF: FPGA: 'ZDACW 37399' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:12.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:12.368 -07 000000478 INF: FPGA: Recv ZDACR 37399
17-03-17 18:36:12.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.528 -07 000000593 INF: FPGA: Recv ZSGSRD 35944
17-03-17 18:36:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.538 -07 000000429 INF: FPGA: Recv ZSGSRD 35946
17-03-17 18:36:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35940
17-03-17 18:36:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.558 -07 000000618 INF: FPGA: Recv ZSGSRD 35939
17-03-17 18:36:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.568 -07 000000608 INF: FPGA: Recv ZSGSRD 35945
17-03-17 18:36:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.578 -07 000000593 INF: FPGA: Recv ZSGSRD 35942
17-03-17 18:36:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35943
17-03-17 18:36:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.598 -07 000000012 INF: FPGA: Recv ZSGSRD 35936
17-03-17 18:36:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.608 -07 000000618 INF: FPGA: Recv ZSGSRD 35940
17-03-17 18:36:12.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:12.618 -07 000000478 INF: FPGA: Recv ZSGSRD 35944
17-03-17 18:36:12.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:12.628 -07 000000608 INF: FPGA: Recv ZPIEZORD 31833
17-03-17 18:36:12.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:12.638 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.1 V.
17-03-17 18:36:12.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35942 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35936 (-170.3 uncal um), Max = 35946 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:36:12.638 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35942, posNoise = 4, negNoise = 6
17-03-17 18:36:12.638 -07 000000610 INF: Z Motor: After move to -0.171202, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:12.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:36:12.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:12.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:12.638 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:12.638 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:12.638 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:12.638 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:12.638 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:12.638 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 18:36:12.638 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:12.638 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:12.638 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:12.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:12.648 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:12.648 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:12.648 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:12.648 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:12.658 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:36:12.658 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:36:12.658 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:36:12.658 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:36:12.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37576 150\n [Camera]
17-03-17 18:36:12.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:13.248 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:13.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:13.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:13.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:13.268 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:13.268 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:13.268 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:13.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:36:13.278 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:13.278 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1066420328, 0x0, 391868352) start.
17-03-17 18:36:13.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37576 779
17-03-17 18:36:13.598 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:13.668 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:36:13.668 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:36:13.668 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:13.668 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:13.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1066420328, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:36:13.668 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:36:13.668 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:13.678 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:13.678 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:36:13.678 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:36:13.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1119
17-03-17 18:36:13.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1119
17-03-17 18:36:13.788 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:13.788 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1119
17-03-17 18:36:13.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1119
17-03-17 18:36:13.788 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:13.898 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:13.898 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) start.
17-03-17 18:36:13.898 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:13.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:13.978 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:36:13.978 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:13.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37576 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:36:13.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:13.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171222384810307. ------
17-03-17 18:36:13.978 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:13.978 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17784 mm
17-03-17 18:36:13.978 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:13.988 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:13.988 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:36:13.988 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38849, sync = True, waitForSettling = False)
17-03-17 18:36:13.988 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:13.988 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:36:13.988 -07 000000478 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 18:36:13.988 -07 000000593 INF: Z Motor: Moving to -0.177839 mm, started at -0.171222 mm, distance = -6.62 um
17-03-17 18:36:13.998 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:13.998 -07 000000448 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:36:14.008 -07 000000593 INF: FPGA: Xmit ZDACW 38849\n [Z Motor]
17-03-17 18:36:14.008 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:36:14.008 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:14.008 -07 000000478 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:14.008 -07 000000478 INF: Y Motor: Moving 1339 steps-15
17-03-17 18:36:14.008 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:36:14.018 -07 000000593 INF: FPGA: 'ZDACW 38849' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:36:14.028 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:14.028 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.011254,
17-03-17 18:36:14.038 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:14.038 -07 000000480 INF: FPGA: Recv ZDACR 38849
17-03-17 18:36:14.048 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:14.048 -07 000000593 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-17 18:36:14.188 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:14.188 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:36:14.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:36:14.288 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 498 ms.
17-03-17 18:36:14.288 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:14.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:36:14.288 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:36:14.288 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:14.288 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:14.288 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 18:36:14.288 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:14.298 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 18:36:14.398 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:36:14.398 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:36:14.438 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:14.438 -07 000000608 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:36:14.448 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:14.448 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:14.448 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:36:14.448 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 18:36:15.398 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:15.398 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:36:15.408 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:15.408 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:15.428 -07 000000478 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:15.428 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:15.428 -07 000000478 INF: Y Motor: Moved to 63.2241 after 1439 ms (table move)
17-03-17 18:36:15.428 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177839 mm (DAC = 38849)
17-03-17 18:36:15.428 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.428 -07 000000512 INF: FPGA: Recv ZSGSRD 36971
17-03-17 18:36:15.438 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:15.438 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:36:15.448 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.448 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.448 -07 000000429 INF: FPGA: Recv ZSGSRD 36973
17-03-17 18:36:15.458 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.458 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.458 -07 000000012 INF: FPGA: Recv ZSGSRD 36976
17-03-17 18:36:15.468 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.468 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.468 -07 000000476 INF: FPGA: Recv ZSGSRD 36977
17-03-17 18:36:15.478 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.478 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.478 -07 000000482 INF: FPGA: Recv ZSGSRD 36981
17-03-17 18:36:15.488 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.488 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.488 -07 000000478 INF: FPGA: Recv ZSGSRD 36972
17-03-17 18:36:15.498 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.498 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.498 -07 000000462 INF: FPGA: Recv ZSGSRD 36971
17-03-17 18:36:15.508 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.508 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.508 -07 000000431 INF: FPGA: Recv ZSGSRD 36968
17-03-17 18:36:15.518 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.518 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:15.518 -07 000000415 INF: FPGA: Recv ZSGSRD 36968
17-03-17 18:36:15.528 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.528 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:15.528 -07 000000593 INF: FPGA: Recv ZPIEZORD 33206
17-03-17 18:36:15.538 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:15.538 -07 000000623 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.3 V.
17-03-17 18:36:15.538 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36972 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36972 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36963 (-176.9 uncal um), Max = 36981 (-177.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:36:15.538 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36972, posNoise = 9, negNoise = 9
17-03-17 18:36:15.538 -07 000000623 INF: Z Motor: After move to -0.177839, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:15.538 -07 000000623 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:36:15.538 -07 000000623 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:15.588 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:36:15.588 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:15.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:15.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:15.588 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:15.588 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:15.588 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:15.588 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:15.598 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:15.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:15.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:15.598 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:15.608 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:36:15.608 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:36:15.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:15.658 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:15.858 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:15.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:15.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:15.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:36:15.888 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:15.898 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:15.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:36:15.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:36:15.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:15.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:15.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:36:15.998 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:15.998 -07 000000608 INF: Autofocus start
17-03-17 18:36:15.998 -07 000000608 INF: MeasureProfile start
17-03-17 18:36:15.998 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:16.008 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:16.008 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:16.008 -07 000000608 INF: MeasureProfile done
17-03-17 18:36:16.008 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:36:16.008 -07 000000608 INF: Autofocus finished
17-03-17 18:36:16.208 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:16.208 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:16.208 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177839323316321. ----------
17-03-17 18:36:16.208 -07 000000610 INF: Cycle	15	Tile	5	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:16.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37346, sync = True, waitForSettling = True)
17-03-17 18:36:16.218 -07 000000610 INF: Z Motor: Moving to -0.170959 mm, started at -0.177839 mm, distance = 6.88 um
17-03-17 18:36:16.218 -07 000000610 INF: FPGA: Xmit ZDACW 37346\n [Z Motor]
17-03-17 18:36:16.218 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:36:16.228 -07 000000610 INF: FPGA: 'ZDACW 37346' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:16.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:16.228 -07 000000480 INF: FPGA: Recv ZDACR 37346
17-03-17 18:36:16.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35899
17-03-17 18:36:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:16.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.398 -07 000000608 INF: FPGA: Recv ZSGSRD 35907
17-03-17 18:36:16.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.408 -07 000000478 INF: FPGA: Recv ZSGSRD 35904
17-03-17 18:36:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.418 -07 000000593 INF: FPGA: Recv ZSGSRD 35900
17-03-17 18:36:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.428 -07 000000415 INF: FPGA: Recv ZSGSRD 35904
17-03-17 18:36:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.438 -07 000000448 INF: FPGA: Recv ZSGSRD 35910
17-03-17 18:36:16.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.448 -07 000000608 INF: FPGA: Recv ZSGSRD 35900
17-03-17 18:36:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.458 -07 000000478 INF: FPGA: Recv ZSGSRD 35900
17-03-17 18:36:16.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.468 -07 000000429 INF: FPGA: Recv ZSGSRD 35898
17-03-17 18:36:16.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:16.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35907
17-03-17 18:36:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:16.488 -07 000000431 INF: FPGA: Recv ZPIEZORD 31756
17-03-17 18:36:16.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:16.498 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.1 V.
17-03-17 18:36:16.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35903 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35902 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35898 (-170.1 uncal um), Max = 35910 (-170.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:16.498 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35903, posNoise = 7, negNoise = 5
17-03-17 18:36:16.498 -07 000000610 INF: Z Motor: After move to -0.170959, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:16.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:36:16.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:16.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:16.498 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:16.498 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:16.498 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:16.498 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:16.498 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:16.498 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:16.498 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:16.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:16.498 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:16.498 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:16.508 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:16.508 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:16.508 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:16.508 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:16.518 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:36:16.518 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:36:16.518 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:36:16.518 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:36:16.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37523 150\n [Camera]
17-03-17 18:36:16.608 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:16.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:16.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:17.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:17.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:17.118 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:17.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:17.128 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:17.128 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:36:17.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:17.128 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:17.128 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:17.128 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:36:17.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37523 779
17-03-17 18:36:17.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:17.498 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:36:17.508 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:36:17.508 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:17.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:36:17.508 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:36:17.508 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:17.508 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:17.508 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:17.508 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:36:17.518 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:36:17.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:17.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:17.648 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:17.648 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:17.648 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1118717656, 0x0, 391868352) start.
17-03-17 18:36:17.648 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:17.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:17.648 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:17.648 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:17.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1154139920, 0x0, 418435064) start.
17-03-17 18:36:17.838 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:36:17.838 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:17.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37523 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-17 18:36:17.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:17.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170971840536779. ------
17-03-17 18:36:17.848 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17737 mm
17-03-17 18:36:17.848 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:17.848 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:17.848 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:36:17.848 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38746, sync = True, waitForSettling = False)
17-03-17 18:36:17.848 -07 000000476 INF: Z Motor: Moving to -0.177368 mm, started at -0.170972 mm, distance = -6.40 um
17-03-17 18:36:17.848 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 18:36:17.848 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:17.858 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:17.858 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:17.868 -07 000000476 INF: FPGA: Xmit ZDACW 38746\n [Z Motor]
17-03-17 18:36:17.868 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:36:17.878 -07 000000476 INF: FPGA: 'ZDACW 38746' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:36:17.878 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:17.878 -07 000000424 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:36:17.888 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:36:17.888 -07 000000512 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:17.888 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:17.888 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:17.888 -07 000000512 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:36:17.888 -07 000000448 INF: FPGA: Recv ZDACR 38746
17-03-17 18:36:17.898 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:17.898 -07 000000476 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:36:17.898 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:18.058 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1118717656, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:36:18.058 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:36:18.058 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:18.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1154139920, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:36:18.058 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:36:18.058 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:18.058 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:18.058 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:18.058 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:18.058 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:36:18.058 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:18.068 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:36:18.268 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:36:18.268 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:36:18.308 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:18.308 -07 000000438 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:36:18.318 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:18.318 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:18.318 -07 000000512 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 18:36:18.318 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-17 18:36:19.268 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:19.268 -07 000000476 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:36:19.278 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:19.278 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:19.288 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:19.288 -07 000000512 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:19.288 -07 000000512 INF: Y Motor: Moved to 64.0571 after 1441 ms (table move)
17-03-17 18:36:19.298 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177368 mm (DAC = 38746)
17-03-17 18:36:19.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.308 -07 000000424 INF: FPGA: Recv ZSGSRD 36900
17-03-17 18:36:19.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:19.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.308 -07 000000431 INF: FPGA: Recv ZSGSRD 36906
17-03-17 18:36:19.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:19.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.318 -07 000000618 INF: FPGA: Recv ZSGSRD 36903
17-03-17 18:36:19.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:19.328 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.328 -07 000000501 INF: FPGA: Recv ZSGSRD 36903
17-03-17 18:36:19.338 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:19.338 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.338 -07 000000424 INF: FPGA: Recv ZSGSRD 36905
17-03-17 18:36:19.348 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:19.348 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.348 -07 000000512 INF: FPGA: Recv ZSGSRD 36901
17-03-17 18:36:19.358 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:19.358 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.358 -07 000000618 INF: FPGA: Recv ZSGSRD 36895
17-03-17 18:36:19.368 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:19.368 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.368 -07 000000608 INF: FPGA: Recv ZSGSRD 36899
17-03-17 18:36:19.378 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:19.388 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.388 -07 000000415 INF: FPGA: Recv ZSGSRD 36903
17-03-17 18:36:19.398 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:19.408 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:19.408 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.03576,
17-03-17 18:36:19.408 -07 000000438 INF: FPGA: Recv ZSGSRD 36907
17-03-17 18:36:19.418 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:19.428 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:19.428 -07 000000415 INF: FPGA: Recv ZPIEZORD 33143
17-03-17 18:36:19.438 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:19.438 -07 000000462 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.912 V. Piezo Error = -8.3 V.
17-03-17 18:36:19.438 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36902 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36903 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36895 (-176.5 uncal um), Max = 36907 (-176.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:36:19.438 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36902, posNoise = 5, negNoise = 7
17-03-17 18:36:19.438 -07 000000462 INF: Z Motor: After move to -0.177368, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:19.438 -07 000000462 INF: Z Motor: Settle wait time = 1445 ms, measure time = 137 ms (allowed 150 ms), total time = 1582 ms
17-03-17 18:36:19.438 -07 000000462 INF: Z Motor: Waiting extra 13 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:19.458 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:36:19.458 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:19.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:19.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:19.458 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:19.458 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:19.458 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:19.458 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:19.468 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:19.468 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:19.468 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:19.468 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:19.478 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:36:19.478 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:36:19.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:19.518 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:19.718 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:19.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:19.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:19.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:36:19.758 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:19.758 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:19.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:36:19.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:36:19.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:19.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:19.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:36:19.858 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:19.858 -07 000000608 INF: Autofocus start
17-03-17 18:36:19.858 -07 000000608 INF: MeasureProfile start
17-03-17 18:36:19.858 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:19.868 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:19.868 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:19.868 -07 000000608 INF: MeasureProfile done
17-03-17 18:36:19.868 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:36:19.868 -07 000000608 INF: Autofocus finished
17-03-17 18:36:20.068 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:20.068 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:20.068 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177389628466398. ----------
17-03-17 18:36:20.068 -07 000000610 INF: Cycle	15	Tile	6	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:20.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37261, sync = True, waitForSettling = True)
17-03-17 18:36:20.078 -07 000000610 INF: Z Motor: Moving to -0.170570 mm, started at -0.177390 mm, distance = 6.82 um
17-03-17 18:36:20.078 -07 000000610 INF: FPGA: Xmit ZDACW 37261\n [Z Motor]
17-03-17 18:36:20.078 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:36:20.088 -07 000000610 INF: FPGA: 'ZDACW 37261' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:20.088 -07 000000482 INF: FPGA: Recv ZDACR 37261
17-03-17 18:36:20.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:20.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.248 -07 000000462 INF: FPGA: Recv ZSGSRD 35840
17-03-17 18:36:20.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:20.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.258 -07 000000593 INF: FPGA: Recv ZSGSRD 35844
17-03-17 18:36:20.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35833
17-03-17 18:36:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35842
17-03-17 18:36:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.288 -07 000000482 INF: FPGA: Recv ZSGSRD 35849
17-03-17 18:36:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35847
17-03-17 18:36:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.308 -07 000000608 INF: FPGA: Recv ZSGSRD 35847
17-03-17 18:36:20.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.318 -07 000000476 INF: FPGA: Recv ZSGSRD 35848
17-03-17 18:36:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.328 -07 000000512 INF: FPGA: Recv ZSGSRD 35843
17-03-17 18:36:20.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:20.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35852
17-03-17 18:36:20.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:20.348 -07 000000478 INF: FPGA: Recv ZPIEZORD 31688
17-03-17 18:36:20.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:20.358 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.2 V.
17-03-17 18:36:20.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35846 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35833 (-169.6 uncal um), Max = 35852 (-169.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:36:20.358 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 8, negNoise = 11
17-03-17 18:36:20.358 -07 000000610 INF: Z Motor: After move to -0.170570, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:20.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:36:20.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:20.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:20.358 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:20.358 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:20.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:20.358 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:20.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:20.358 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:20.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:20.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:20.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:20.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:20.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:36:20.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:20.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:20.368 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:20.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:36:20.378 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:36:20.378 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:36:20.378 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:36:20.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37437 150\n [Camera]
17-03-17 18:36:20.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:20.978 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:20.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:20.978 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:20.978 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:20.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:36:20.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:20.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:20.978 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:21.108 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:21.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1062015024, 0x0, 418435064) start.
17-03-17 18:36:21.168 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37437 779
17-03-17 18:36:21.318 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:21.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:36:21.368 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:36:21.368 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:21.368 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:21.368 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:36:21.478 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1062015024, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:36:21.478 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:36:21.478 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:21.478 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:21.488 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 18:36:21.508 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1119
17-03-17 18:36:21.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1119
17-03-17 18:36:21.508 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:21.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1119
17-03-17 18:36:21.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1119
17-03-17 18:36:21.508 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:21.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:36:21.508 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:21.508 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:21.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:21.608 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:21.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:21.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:21.698 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:21.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37437 150' command took 4 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-17 18:36:21.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:21.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170592812020415. ------
17-03-17 18:36:21.698 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17697 mm
17-03-17 18:36:21.698 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:21.698 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:21.708 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:21.708 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:36:21.708 -07 000000429 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 18:36:21.708 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38659, sync = True, waitForSettling = False)
17-03-17 18:36:21.708 -07 000000623 INF: Z Motor: Moving to -0.176970 mm, started at -0.170593 mm, distance = -6.38 um
17-03-17 18:36:21.718 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:21.718 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:21.718 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:36:21.728 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:36:21.728 -07 000000429 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:21.728 -07 000000429 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:21.728 -07 000000429 INF: Y Motor: Moving 1337 steps-11
17-03-17 18:36:21.728 -07 000000623 INF: FPGA: Xmit ZDACW 38659\n [Z Motor]
17-03-17 18:36:21.728 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:36:21.738 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:21.738 -07 000000623 INF: FPGA: 'ZDACW 38659' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:36:21.748 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:21.758 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:21.758 -07 000000501 INF: FPGA: Recv ZDACR 38659
17-03-17 18:36:21.768 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:21.768 -07 000000623 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:36:21.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:36:21.888 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:36:21.888 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:21.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:21.898 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:36:21.898 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:36:21.898 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:21.898 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:21.898 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:36:21.898 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:36:21.938 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:21.938 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:36:22.118 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:36:22.118 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:36:22.148 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:22.158 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:36:22.158 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:36:22.158 -07 000000429 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:22.158 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:36:22.158 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 18:36:23.108 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:23.108 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:36:23.118 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:23.118 -07 000000429 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:23.138 -07 000000429 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:23.138 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:23.138 -07 000000429 INF: Y Motor: Moved to 64.8789 after 1424 ms (table move)
17-03-17 18:36:23.138 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176970 mm (DAC = 38659)
17-03-17 18:36:23.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36839
17-03-17 18:36:23.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:36:23.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.148 -07 000000501 INF: FPGA: Recv ZSGSRD 36830
17-03-17 18:36:23.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.158 -07 000000448 INF: FPGA: Recv ZSGSRD 36835
17-03-17 18:36:23.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.168 -07 000000618 INF: FPGA: Recv ZSGSRD 36834
17-03-17 18:36:23.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36837
17-03-17 18:36:23.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36845
17-03-17 18:36:23.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.198 -07 000000429 INF: FPGA: Recv ZSGSRD 36845
17-03-17 18:36:23.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.208 -07 000000478 INF: FPGA: Recv ZSGSRD 36839
17-03-17 18:36:23.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.218 -07 000000623 INF: FPGA: Recv ZSGSRD 36837
17-03-17 18:36:23.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:23.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36831
17-03-17 18:36:23.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.238 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:23.238 -07 000000448 INF: FPGA: Recv ZPIEZORD 33059
17-03-17 18:36:23.248 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.248 -07 000000482 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.4 V.
17-03-17 18:36:23.248 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36837 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36837 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36830 (-176.0 uncal um), Max = 36845 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:36:23.248 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36837, posNoise = 8, negNoise = 7
17-03-17 18:36:23.248 -07 000000482 INF: Z Motor: After move to -0.176970, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:23.248 -07 000000482 INF: Z Motor: Settle wait time = 1428 ms, measure time = 106 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:36:23.248 -07 000000482 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:23.298 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:36:23.298 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:23.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:23.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:23.298 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:23.298 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:23.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:23.298 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:23.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:23.298 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:23.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:23.308 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:23.318 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:36:23.318 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:36:23.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:23.358 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:23.558 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:23.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:23.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:23.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:36:23.608 -07 000000480 INF: FPGA: Recv @CAMSNAP 283
17-03-17 18:36:23.608 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:23.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 18:36:23.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:36:23.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:23.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:23.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:36:23.708 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:23.708 -07 000000415 INF: Autofocus start
17-03-17 18:36:23.708 -07 000000415 INF: MeasureProfile start
17-03-17 18:36:23.708 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:23.718 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:23.718 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:23.718 -07 000000415 INF: MeasureProfile done
17-03-17 18:36:23.718 -07 000000415 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:36:23.718 -07 000000415 INF: Autofocus finished
17-03-17 18:36:23.918 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:23.918 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:23.918 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176972054677183. ----------
17-03-17 18:36:23.928 -07 000000610 INF: Cycle	15	Tile	7	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:23.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37209, sync = True, waitForSettling = True)
17-03-17 18:36:23.928 -07 000000610 INF: Z Motor: Moving to -0.170332 mm, started at -0.176972 mm, distance = 6.64 um
17-03-17 18:36:23.928 -07 000000610 INF: FPGA: Xmit ZDACW 37209\n [Z Motor]
17-03-17 18:36:23.928 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:36:23.938 -07 000000610 INF: FPGA: 'ZDACW 37209' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:23.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:23.938 -07 000000429 INF: FPGA: Recv ZDACR 37209
17-03-17 18:36:23.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:23.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:24.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.098 -07 000000431 INF: FPGA: Recv ZSGSRD 35804
17-03-17 18:36:24.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:24.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.108 -07 000000415 INF: FPGA: Recv ZSGSRD 35802
17-03-17 18:36:24.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.118 -07 000000462 INF: FPGA: Recv ZSGSRD 35805
17-03-17 18:36:24.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.128 -07 000000482 INF: FPGA: Recv ZSGSRD 35808
17-03-17 18:36:24.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35804
17-03-17 18:36:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.148 -07 000000438 INF: FPGA: Recv ZSGSRD 35810
17-03-17 18:36:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.158 -07 000000593 INF: FPGA: Recv ZSGSRD 35806
17-03-17 18:36:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.168 -07 000000478 INF: FPGA: Recv ZSGSRD 35802
17-03-17 18:36:24.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.178 -07 000000012 INF: FPGA: Recv ZSGSRD 35805
17-03-17 18:36:24.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:24.188 -07 000000512 INF: FPGA: Recv ZSGSRD 35805
17-03-17 18:36:24.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:24.198 -07 000000476 INF: FPGA: Recv ZPIEZORD 31674
17-03-17 18:36:24.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:24.208 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.1 V.
17-03-17 18:36:24.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35805 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35805 (-169.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35802 (-169.4 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:36:24.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35805, posNoise = 5, negNoise = 3
17-03-17 18:36:24.208 -07 000000610 INF: Z Motor: After move to -0.170332, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:24.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:36:24.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:24.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:24.208 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:24.208 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:24.208 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:24.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:24.208 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:24.208 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:24.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:24.208 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:24.208 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:24.208 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:24.218 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:24.218 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:24.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:24.218 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:24.228 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:36:24.228 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:36:24.228 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:36:24.228 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:36:24.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37386 150\n [Camera]
17-03-17 18:36:24.428 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:24.788 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.023489,
17-03-17 18:36:24.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:24.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:24.818 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:24.818 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:24.818 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 18:36:24.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:24.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:24.828 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:24.948 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:24.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:25.018 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37386 779
17-03-17 18:36:25.158 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:25.208 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:36:25.208 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:36:25.208 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:25.208 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:36:25.208 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:36:25.328 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:36:25.328 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:36:25.328 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:25.328 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:25.338 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 18:36:25.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:25.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:25.358 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:25.358 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:25.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:36:25.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:25.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:25.358 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:25.358 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:25.358 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 18:36:25.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:25.548 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:25.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37386 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-17 18:36:25.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:25.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170342267746886. ------
17-03-17 18:36:25.548 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:25.548 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17689 mm
17-03-17 18:36:25.548 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:25.548 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:25.558 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:36:25.558 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:25.558 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:36:25.558 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38641, sync = True, waitForSettling = False)
17-03-17 18:36:25.558 -07 000000431 INF: Z Motor: Moving to -0.176887 mm, started at -0.170342 mm, distance = -6.54 um
17-03-17 18:36:25.558 -07 000000482 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 18:36:25.568 -07 000000431 INF: FPGA: Xmit ZDACW 38641\n [Z Motor]
17-03-17 18:36:25.568 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:36:25.578 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:25.578 -07 000000431 INF: FPGA: 'ZDACW 38641' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:36:25.578 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:36:25.588 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:36:25.588 -07 000000482 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:25.588 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:25.588 -07 000000512 INF: FPGA: Recv ZDACR 38641
17-03-17 18:36:25.588 -07 000000482 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:25.588 -07 000000482 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:36:25.598 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:25.598 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:25.598 -07 000000431 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:36:25.748 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:36:25.748 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:36:25.748 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:25.748 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:25.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:36:25.748 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:36:25.748 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:25.758 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:25.758 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:36:25.758 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:25.758 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:36:25.758 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:36:25.968 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:36:25.968 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:36:26.008 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:26.008 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:36:26.018 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:26.018 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:26.018 -07 000000482 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:36:26.018 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 18:36:26.608 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:26.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:26.968 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:26.968 -07 000000480 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:36:26.978 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:26.978 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:26.998 -07 000000482 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:26.998 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:26.998 -07 000000482 INF: Y Motor: Moved to 65.7144 after 1443 ms (table move)
17-03-17 18:36:26.998 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176887 mm (DAC = 38641)
17-03-17 18:36:26.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.008 -07 000000415 INF: FPGA: Recv ZSGSRD 36822
17-03-17 18:36:27.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 18:36:27.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.008 -07 000000476 INF: FPGA: Recv ZSGSRD 36828
17-03-17 18:36:27.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:27.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.018 -07 000000512 INF: FPGA: Recv ZSGSRD 36826
17-03-17 18:36:27.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.028 -07 000000012 INF: FPGA: Recv ZSGSRD 36829
17-03-17 18:36:27.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.038 -07 000000593 INF: FPGA: Recv ZSGSRD 36824
17-03-17 18:36:27.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.048 -07 000000482 INF: FPGA: Recv ZSGSRD 36829
17-03-17 18:36:27.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.058 -07 000000608 INF: FPGA: Recv ZSGSRD 36819
17-03-17 18:36:27.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.068 -07 000000480 INF: FPGA: Recv ZSGSRD 36825
17-03-17 18:36:27.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.078 -07 000000448 INF: FPGA: Recv ZSGSRD 36823
17-03-17 18:36:27.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.088 -07 000000482 INF: FPGA: Recv ZSGSRD 36818
17-03-17 18:36:27.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.098 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:27.098 -07 000000501 INF: FPGA: Recv ZPIEZORD 33035
17-03-17 18:36:27.108 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.108 -07 000000429 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.896 V. Piezo Error = -8.4 V.
17-03-17 18:36:27.108 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36824 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36824 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36818 (-176.0 uncal um), Max = 36829 (-176.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:36:27.108 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36824, posNoise = 5, negNoise = 6
17-03-17 18:36:27.108 -07 000000429 INF: Z Motor: After move to -0.176887, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:27.108 -07 000000429 INF: Z Motor: Settle wait time = 1446 ms, measure time = 104 ms (allowed 150 ms), total time = 1550 ms
17-03-17 18:36:27.108 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:27.158 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:36:27.158 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:27.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:27.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:27.158 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:27.158 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:27.158 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:27.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:27.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:27.158 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:27.168 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:27.168 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:27.178 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:36:27.178 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:36:27.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:27.228 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:27.428 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:27.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:27.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:27.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:36:27.468 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:27.468 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:27.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 18:36:27.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:36:27.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:27.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:36:27.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:36:27.568 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:27.568 -07 000000512 INF: Autofocus start
17-03-17 18:36:27.568 -07 000000512 INF: MeasureProfile start
17-03-17 18:36:27.568 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:27.578 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:27.578 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:27.578 -07 000000512 INF: MeasureProfile done
17-03-17 18:36:27.578 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:36:27.578 -07 000000512 INF: Autofocus finished
17-03-17 18:36:27.778 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:27.778 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:27.778 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.17688853991934. ----------
17-03-17 18:36:27.778 -07 000000610 INF: Cycle	15	Tile	8	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:27.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37156, sync = True, waitForSettling = True)
17-03-17 18:36:27.788 -07 000000610 INF: Z Motor: Moving to -0.170089 mm, started at -0.176889 mm, distance = 6.80 um
17-03-17 18:36:27.788 -07 000000610 INF: FPGA: Xmit ZDACW 37156\n [Z Motor]
17-03-17 18:36:27.788 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:36:27.798 -07 000000610 INF: FPGA: 'ZDACW 37156' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:27.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:27.798 -07 000000618 INF: FPGA: Recv ZDACR 37156
17-03-17 18:36:27.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.958 -07 000000424 INF: FPGA: Recv ZSGSRD 35769
17-03-17 18:36:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.968 -07 000000501 INF: FPGA: Recv ZSGSRD 35768
17-03-17 18:36:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.978 -07 000000593 INF: FPGA: Recv ZSGSRD 35766
17-03-17 18:36:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.988 -07 000000415 INF: FPGA: Recv ZSGSRD 35764
17-03-17 18:36:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:27.998 -07 000000429 INF: FPGA: Recv ZSGSRD 35774
17-03-17 18:36:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:28.008 -07 000000623 INF: FPGA: Recv ZSGSRD 35766
17-03-17 18:36:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:28.018 -07 000000431 INF: FPGA: Recv ZSGSRD 35764
17-03-17 18:36:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:28.028 -07 000000512 INF: FPGA: Recv ZSGSRD 35769
17-03-17 18:36:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:28.038 -07 000000415 INF: FPGA: Recv ZSGSRD 35768
17-03-17 18:36:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:28.048 -07 000000429 INF: FPGA: Recv ZSGSRD 35766
17-03-17 18:36:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:28.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:28.058 -07 000000482 INF: FPGA: Recv ZPIEZORD 31596
17-03-17 18:36:28.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:28.068 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -9.2 V.
17-03-17 18:36:28.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35767 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35767 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35764 (-169.2 uncal um), Max = 35774 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:36:28.068 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35767, posNoise = 7, negNoise = 3
17-03-17 18:36:28.068 -07 000000610 INF: Z Motor: After move to -0.170089, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:28.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:36:28.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:28.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:28.068 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:28.068 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:28.068 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:28.068 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:28.068 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:28.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:28.068 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:28.068 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:28.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:28.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:28.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:28.078 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:28.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:28.078 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:28.088 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 18:36:28.088 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:36:28.088 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 18:36:28.088 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:36:28.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37333 150\n [Camera]
17-03-17 18:36:28.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:28.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:28.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:28.688 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:28.688 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:28.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:36:28.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:28.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:28.688 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:28.688 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:28.688 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) start.
17-03-17 18:36:28.878 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37333 779
17-03-17 18:36:29.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:29.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:36:29.078 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:36:29.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:29.078 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:36:29.078 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:36:29.078 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:29.078 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:29.078 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:29.078 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:36:29.088 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:36:29.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:29.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:29.218 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:29.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:29.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:29.338 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:29.338 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:29.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1132859552, 0x0, 391868352) start.
17-03-17 18:36:29.338 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:29.338 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:36:29.408 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:29.408 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:29.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37333 150' command took 2 ms to send, 1308 ms to get response, and 1318 ms overall
17-03-17 18:36:29.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:29.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.170098147685499. ------
17-03-17 18:36:29.418 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:29.418 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17644 mm
17-03-17 18:36:29.418 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:29.418 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:36:29.418 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 18:36:29.418 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:29.418 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38542, sync = True, waitForSettling = False)
17-03-17 18:36:29.418 -07 000000424 INF: Z Motor: Moving to -0.176434 mm, started at -0.170098 mm, distance = -6.34 um
17-03-17 18:36:29.428 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:29.428 -07 000000424 INF: FPGA: Xmit ZDACW 38542\n [Z Motor]
17-03-17 18:36:29.428 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:36:29.438 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:29.438 -07 000000424 INF: FPGA: 'ZDACW 38542' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:36:29.438 -07 000000623 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:36:29.448 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:29.448 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:36:29.448 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:29.448 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:29.448 -07 000000462 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:36:29.458 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:29.458 -07 000000618 INF: FPGA: Recv ZDACR 38542
17-03-17 18:36:29.468 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:29.468 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:29.468 -07 000000424 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:36:29.648 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:29.648 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:36:29.728 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1132859552, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:36:29.728 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:36:29.728 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:29.728 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:36:29.728 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:36:29.728 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:29.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:29.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 18:36:29.738 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:29.738 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:36:29.838 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:36:29.838 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:36:29.878 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:29.878 -07 000000618 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:36:29.888 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:29.888 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:29.888 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:36:29.888 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:36:30.148 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.042558,
17-03-17 18:36:30.838 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:30.838 -07 000000438 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:36:30.848 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:30.848 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:30.868 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:30.868 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:30.868 -07 000000462 INF: Y Motor: Moved to 66.5391 after 1442 ms (table move)
17-03-17 18:36:30.868 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176434 mm (DAC = 38542)
17-03-17 18:36:30.868 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.868 -07 000000501 INF: FPGA: Recv ZSGSRD 36755
17-03-17 18:36:30.878 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:30.878 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.878 -07 000000438 INF: FPGA: Recv ZSGSRD 36753
17-03-17 18:36:30.888 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.888 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.888 -07 000000623 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:36:30.898 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.898 -07 000000424 INF: FPGA: Recv ZSGSRD 36759
17-03-17 18:36:30.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:30.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.908 -07 000000438 INF: FPGA: Recv ZSGSRD 36757
17-03-17 18:36:30.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.918 -07 000000512 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:36:30.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.928 -07 000000429 INF: FPGA: Recv ZSGSRD 36751
17-03-17 18:36:30.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.938 -07 000000480 INF: FPGA: Recv ZSGSRD 36751
17-03-17 18:36:30.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.948 -07 000000415 INF: FPGA: Recv ZSGSRD 36756
17-03-17 18:36:30.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.958 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:30.958 -07 000000462 INF: FPGA: Recv ZSGSRD 36749
17-03-17 18:36:30.968 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.968 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:30.968 -07 000000618 INF: FPGA: Recv ZPIEZORD 32923
17-03-17 18:36:30.978 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:30.978 -07 000000476 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.5 V.
17-03-17 18:36:30.978 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36754 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36749 (-175.5 uncal um), Max = 36759 (-175.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:30.978 -07 000000476 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36754, posNoise = 5, negNoise = 5
17-03-17 18:36:30.978 -07 000000476 INF: Z Motor: After move to -0.176434, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:30.978 -07 000000476 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:36:30.978 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:31.028 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 18:36:31.028 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:31.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:31.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:31.028 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:31.028 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:31.028 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:31.028 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:31.028 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:31.028 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:31.038 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:31.038 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:31.048 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:36:31.048 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:36:31.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:31.098 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:31.298 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:31.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:31.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:31.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:36:31.338 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:31.338 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:31.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:36:31.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:36:31.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:31.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:31.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 18:36:31.438 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:31.438 -07 000000012 INF: Autofocus start
17-03-17 18:36:31.438 -07 000000012 INF: MeasureProfile start
17-03-17 18:36:31.438 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:31.448 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:31.448 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:31.448 -07 000000012 INF: MeasureProfile done
17-03-17 18:36:31.448 -07 000000012 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:36:31.448 -07 000000012 INF: Autofocus finished
17-03-17 18:36:31.608 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:31.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:31.648 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:31.648 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:31.648 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176438845069417. ----------
17-03-17 18:36:31.648 -07 000000610 INF: Cycle	15	Tile	9	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:31.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37022, sync = True, waitForSettling = True)
17-03-17 18:36:31.658 -07 000000610 INF: Z Motor: Moving to -0.169476 mm, started at -0.176439 mm, distance = 6.96 um
17-03-17 18:36:31.658 -07 000000610 INF: FPGA: Xmit ZDACW 37022\n [Z Motor]
17-03-17 18:36:31.658 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:36:31.668 -07 000000610 INF: FPGA: 'ZDACW 37022' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:31.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:31.668 -07 000000462 INF: FPGA: Recv ZDACR 37022
17-03-17 18:36:31.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:31.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.828 -07 000000501 INF: FPGA: Recv ZSGSRD 35672
17-03-17 18:36:31.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:31.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.838 -07 000000429 INF: FPGA: Recv ZSGSRD 35673
17-03-17 18:36:31.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.848 -07 000000623 INF: FPGA: Recv ZSGSRD 35669
17-03-17 18:36:31.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.858 -07 000000618 INF: FPGA: Recv ZSGSRD 35669
17-03-17 18:36:31.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.868 -07 000000482 INF: FPGA: Recv ZSGSRD 35677
17-03-17 18:36:31.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.878 -07 000000480 INF: FPGA: Recv ZSGSRD 35669
17-03-17 18:36:31.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.888 -07 000000593 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:36:31.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.898 -07 000000438 INF: FPGA: Recv ZSGSRD 35671
17-03-17 18:36:31.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:31.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.908 -07 000000429 INF: FPGA: Recv ZSGSRD 35670
17-03-17 18:36:31.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:31.918 -07 000000482 INF: FPGA: Recv ZSGSRD 35673
17-03-17 18:36:31.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:31.928 -07 000000480 INF: FPGA: Recv ZPIEZORD 31488
17-03-17 18:36:31.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:31.938 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.2 V.
17-03-17 18:36:31.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35672 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35672 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35669 (-168.6 uncal um), Max = 35677 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:36:31.938 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35672, posNoise = 5, negNoise = 3
17-03-17 18:36:31.938 -07 000000610 INF: Z Motor: After move to -0.169476, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:31.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:36:31.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:31.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:31.938 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:31.938 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:31.938 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:31.938 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:31.938 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:31.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:31.938 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:31.938 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:31.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:31.938 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:31.948 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:31.948 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:31.948 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:36:31.948 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:31.958 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:36:31.958 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:36:31.958 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:36:31.958 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:36:31.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37199 150\n [Camera]
17-03-17 18:36:32.168 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:32.558 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:32.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:32.558 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:32.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:32.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:32.558 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:32.558 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:32.558 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:32.568 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:32.568 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1066420328, 0x0, 391868352) start.
17-03-17 18:36:32.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37199 779
17-03-17 18:36:32.898 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:32.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:36:32.938 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:36:32.938 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:32.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1066420328, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:36:32.938 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:36:32.938 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:32.948 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:32.948 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:32.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:36:32.948 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:36:33.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:33.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:33.088 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:33.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:33.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:33.218 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:33.218 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:33.218 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 18:36:33.218 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:33.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:33.278 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:36:33.288 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:33.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37199 150' command took 2 ms to send, 1311 ms to get response, and 1320 ms overall
17-03-17 18:36:33.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:33.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169487847532032. ------
17-03-17 18:36:33.288 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:33.288 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17635 mm
17-03-17 18:36:33.288 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:33.288 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:33.298 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:36:33.298 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:36:33.298 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 18:36:33.298 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:33.298 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38524, sync = True, waitForSettling = False)
17-03-17 18:36:33.298 -07 000000618 INF: Z Motor: Moving to -0.176352 mm, started at -0.169488 mm, distance = -6.86 um
17-03-17 18:36:33.298 -07 000000431 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:36:33.308 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:33.308 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:33.308 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:33.308 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:33.308 -07 000000424 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:36:33.318 -07 000000618 INF: FPGA: Xmit ZDACW 38524\n [Z Motor]
17-03-17 18:36:33.318 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:36:33.328 -07 000000618 INF: FPGA: 'ZDACW 38524' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:33.328 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:33.338 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:33.338 -07 000000512 INF: FPGA: Recv ZDACR 38524
17-03-17 18:36:33.348 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:33.348 -07 000000618 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:36:33.508 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:33.508 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 194 ms to get response, and 213 ms overall
17-03-17 18:36:33.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:36:33.608 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:36:33.608 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:33.608 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:36:33.608 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:36:33.608 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:33.608 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:33.618 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 18:36:33.618 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:33.618 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:36:33.698 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:36:33.698 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 18:36:33.738 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:33.738 -07 000000429 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:36:33.748 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:33.748 -07 000000424 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:33.748 -07 000000424 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 18:36:33.748 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-17 18:36:34.698 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:34.698 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:36:34.708 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.708 -07 000000424 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:34.728 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:34.728 -07 000000424 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:34.728 -07 000000424 INF: Y Motor: Moved to 67.3721 after 1430 ms (table move)
17-03-17 18:36:34.728 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176352 mm (DAC = 38524)
17-03-17 18:36:34.728 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.728 -07 000000476 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:36:34.738 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:34.738 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.738 -07 000000438 INF: FPGA: Recv ZSGSRD 36739
17-03-17 18:36:34.748 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.748 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.748 -07 000000448 INF: FPGA: Recv ZSGSRD 36739
17-03-17 18:36:34.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.758 -07 000000424 INF: FPGA: Recv ZSGSRD 36744
17-03-17 18:36:34.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.768 -07 000000476 INF: FPGA: Recv ZSGSRD 36743
17-03-17 18:36:34.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36742
17-03-17 18:36:34.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.788 -07 000000608 INF: FPGA: Recv ZSGSRD 36748
17-03-17 18:36:34.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.798 -07 000000429 INF: FPGA: Recv ZSGSRD 36738
17-03-17 18:36:34.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.808 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.808 -07 000000593 INF: FPGA: Recv ZSGSRD 36745
17-03-17 18:36:34.818 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.818 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:34.818 -07 000000482 INF: FPGA: Recv ZSGSRD 36742
17-03-17 18:36:34.828 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.828 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:34.828 -07 000000448 INF: FPGA: Recv ZPIEZORD 32940
17-03-17 18:36:34.838 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:34.838 -07 000000012 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.4 V.
17-03-17 18:36:34.838 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36743 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36742 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36738 (-175.4 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:34.838 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36743, posNoise = 9, negNoise = 5
17-03-17 18:36:34.838 -07 000000012 INF: Z Motor: After move to -0.176352, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:34.838 -07 000000012 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:36:34.838 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:34.888 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:36:34.888 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:34.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:34.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:34.888 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:34.888 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:34.888 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:34.888 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:34.888 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:34.888 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:34.898 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:34.898 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:34.898 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:36:34.898 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:36:34.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:34.948 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:35.148 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:35.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:35.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:35.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:36:35.188 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:35.188 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:35.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:36:35.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:36:35.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:35.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:36:35.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:36:35.288 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:35.288 -07 000000431 INF: Autofocus start
17-03-17 18:36:35.288 -07 000000431 INF: MeasureProfile start
17-03-17 18:36:35.288 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:35.298 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:35.298 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:35.298 -07 000000431 INF: MeasureProfile done
17-03-17 18:36:35.298 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:36:35.298 -07 000000431 INF: Autofocus finished
17-03-17 18:36:35.498 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:35.498 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:35.498 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176368178735858. ----------
17-03-17 18:36:35.498 -07 000000610 INF: Cycle	15	Tile	10	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:35.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37021, sync = True, waitForSettling = True)
17-03-17 18:36:35.508 -07 000000610 INF: Z Motor: Moving to -0.169471 mm, started at -0.176368 mm, distance = 6.90 um
17-03-17 18:36:35.518 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.024884,
17-03-17 18:36:35.528 -07 000000610 INF: FPGA: Xmit ZDACW 37021\n [Z Motor]
17-03-17 18:36:35.528 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:36:35.538 -07 000000610 INF: FPGA: 'ZDACW 37021' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:36:35.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:35.548 -07 000000618 INF: FPGA: Recv ZDACR 37021
17-03-17 18:36:35.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:35.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:35.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35670
17-03-17 18:36:35.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.718 -07 000000618 INF: FPGA: Recv ZSGSRD 35672
17-03-17 18:36:35.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.728 -07 000000438 INF: FPGA: Recv ZSGSRD 35672
17-03-17 18:36:35.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.738 -07 000000478 INF: FPGA: Recv ZSGSRD 35666
17-03-17 18:36:35.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.748 -07 000000415 INF: FPGA: Recv ZSGSRD 35671
17-03-17 18:36:35.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35672
17-03-17 18:36:35.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.768 -07 000000480 INF: FPGA: Recv ZSGSRD 35670
17-03-17 18:36:35.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.778 -07 000000478 INF: FPGA: Recv ZSGSRD 35669
17-03-17 18:36:35.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.788 -07 000000438 INF: FPGA: Recv ZSGSRD 35666
17-03-17 18:36:35.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:35.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:36:35.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:35.808 -07 000000501 INF: FPGA: Recv ZPIEZORD 31488
17-03-17 18:36:35.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:35.818 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.2 V.
17-03-17 18:36:35.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35670 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35670 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35666 (-168.6 uncal um), Max = 35675 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:36:35.818 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35670, posNoise = 5, negNoise = 4
17-03-17 18:36:35.818 -07 000000610 INF: Z Motor: After move to -0.169471, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:35.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-17 18:36:35.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:35.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:35.818 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:35.818 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:35.818 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:35.818 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:35.818 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:35.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:35.818 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:35.818 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:35.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:35.818 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:35.828 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:35.828 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:35.828 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:35.828 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:35.838 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:36:35.838 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:36:35.838 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:36:35.838 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:36:35.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37198 150\n [Camera]
17-03-17 18:36:36.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:36.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:36.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:36.448 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:36.448 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:36.448 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 18:36:36.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:36.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:36.448 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:36.448 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:36.448 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1062015024, 0x0, 418435064) start.
17-03-17 18:36:36.608 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:36.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:36.638 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37198 779
17-03-17 18:36:36.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:36.848 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:36:36.848 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:36:36.848 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:36.848 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:36.848 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:36:36.848 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1062015024, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:36:36.848 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:36:36.848 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:36.858 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:36.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:36:36.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:36.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:36.978 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:36.978 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:36.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1097437288, 0x0, 391868352) start.
17-03-17 18:36:36.978 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:36.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:36.978 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:36.978 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:36.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1132859552, 0x0, 418435064) start.
17-03-17 18:36:37.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:36:37.168 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:37.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37198 150' command took 2 ms to send, 1308 ms to get response, and 1329 ms overall
17-03-17 18:36:37.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:37.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169474999107748. ------
17-03-17 18:36:37.288 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17541 mm
17-03-17 18:36:37.288 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:37.288 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:37.298 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38319, sync = True, waitForSettling = False)
17-03-17 18:36:37.298 -07 000000512 INF: Z Motor: Moving to -0.175413 mm, started at -0.169475 mm, distance = -5.94 um
17-03-17 18:36:37.298 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:37.298 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:36:37.298 -07 000000512 INF: FPGA: Xmit ZDACW 38319\n [Z Motor]
17-03-17 18:36:37.298 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:36:37.298 -07 000000476 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 18:36:37.298 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:36:37.308 -07 000000512 INF: FPGA: 'ZDACW 38319' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:37.308 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:37.308 -07 000000501 INF: FPGA: Recv ZDACR 38319
17-03-17 18:36:37.318 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:37.318 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:37.318 -07 000000512 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 18:36:37.328 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:37.328 -07 000000478 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:36:37.338 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-17 18:36:37.338 -07 000000476 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:37.338 -07 000000476 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:37.338 -07 000000476 INF: Y Motor: Moving 1344 steps-22
17-03-17 18:36:37.338 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:37.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1097437288, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:36:37.388 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:36:37.388 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:37.388 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1132859552, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:36:37.388 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:36:37.388 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:37.388 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:37.388 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:36:37.388 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:36:37.398 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:36:37.518 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:37.518 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 18:36:37.718 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:36:37.718 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 18:36:37.748 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:37.748 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:36:37.758 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:37.758 -07 000000476 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:37.758 -07 000000476 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:36:37.758 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-17 18:36:38.708 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:38.708 -07 000000424 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:36:38.718 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:38.718 -07 000000476 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:38.728 -07 000000476 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:38.728 -07 000000476 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:38.728 -07 000000476 INF: Y Motor: Moved to 68.2051 after 1437 ms (table move)
17-03-17 18:36:38.738 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175413 mm (DAC = 38319)
17-03-17 18:36:38.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.738 -07 000000512 INF: FPGA: Recv ZSGSRD 36603
17-03-17 18:36:38.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:38.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.748 -07 000000429 INF: FPGA: Recv ZSGSRD 36598
17-03-17 18:36:38.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.758 -07 000000623 INF: FPGA: Recv ZSGSRD 36588
17-03-17 18:36:38.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:38.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.768 -07 000000476 INF: FPGA: Recv ZSGSRD 36592
17-03-17 18:36:38.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.778 -07 000000448 INF: FPGA: Recv ZSGSRD 36594
17-03-17 18:36:38.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.788 -07 000000618 INF: FPGA: Recv ZSGSRD 36596
17-03-17 18:36:38.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.798 -07 000000429 INF: FPGA: Recv ZSGSRD 36604
17-03-17 18:36:38.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.808 -07 000000593 INF: FPGA: Recv ZSGSRD 36590
17-03-17 18:36:38.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.818 -07 000000415 INF: FPGA: Recv ZSGSRD 36598
17-03-17 18:36:38.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:38.828 -07 000000623 INF: FPGA: Recv ZSGSRD 36599
17-03-17 18:36:38.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.838 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:38.838 -07 000000431 INF: FPGA: Recv ZPIEZORD 32751
17-03-17 18:36:38.848 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:38.848 -07 000000462 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.5 V.
17-03-17 18:36:38.848 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36597 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36588 (-174.5 uncal um), Max = 36604 (-174.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:36:38.848 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 8, negNoise = 8
17-03-17 18:36:38.848 -07 000000462 INF: Z Motor: After move to -0.175413, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:38.848 -07 000000462 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:36:38.848 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:38.898 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:36:38.898 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:38.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:38.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:38.898 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:38.898 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:38.898 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:38.898 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:38.908 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:38.908 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:38.908 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:38.908 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:38.918 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:36:38.918 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:36:38.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:38.968 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:39.168 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:39.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:39.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:39.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:36:39.208 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:39.208 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:39.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 18:36:39.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:36:39.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:39.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:39.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:36:39.308 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:39.308 -07 000000593 INF: Autofocus start
17-03-17 18:36:39.308 -07 000000593 INF: MeasureProfile start
17-03-17 18:36:39.308 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:39.318 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:39.318 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:39.318 -07 000000593 INF: MeasureProfile done
17-03-17 18:36:39.318 -07 000000593 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:36:39.318 -07 000000593 INF: Autofocus finished
17-03-17 18:36:39.518 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:39.518 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 18:36:39.518 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175423819551019. ----------
17-03-17 18:36:39.518 -07 000000610 INF: Cycle	15	Tile	11	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:39.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36798, sync = True, waitForSettling = True)
17-03-17 18:36:39.528 -07 000000610 INF: Z Motor: Moving to -0.168450 mm, started at -0.175424 mm, distance = 6.97 um
17-03-17 18:36:39.528 -07 000000610 INF: FPGA: Xmit ZDACW 36798\n [Z Motor]
17-03-17 18:36:39.528 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:36:39.538 -07 000000610 INF: FPGA: 'ZDACW 36798' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:39.538 -07 000000480 INF: FPGA: Recv ZDACR 36798
17-03-17 18:36:39.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:39.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.698 -07 000000012 INF: FPGA: Recv ZSGSRD 35517
17-03-17 18:36:39.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:39.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.708 -07 000000593 INF: FPGA: Recv ZSGSRD 35511
17-03-17 18:36:39.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.718 -07 000000478 INF: FPGA: Recv ZSGSRD 35515
17-03-17 18:36:39.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35511
17-03-17 18:36:39.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.738 -07 000000480 INF: FPGA: Recv ZSGSRD 35514
17-03-17 18:36:39.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.748 -07 000000462 INF: FPGA: Recv ZSGSRD 35517
17-03-17 18:36:39.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.758 -07 000000448 INF: FPGA: Recv ZSGSRD 35510
17-03-17 18:36:39.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.768 -07 000000482 INF: FPGA: Recv ZSGSRD 35513
17-03-17 18:36:39.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.778 -07 000000415 INF: FPGA: Recv ZSGSRD 35513
17-03-17 18:36:39.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:39.788 -07 000000618 INF: FPGA: Recv ZSGSRD 35512
17-03-17 18:36:39.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:39.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:39.798 -07 000000424 INF: FPGA: Recv ZPIEZORD 31311
17-03-17 18:36:39.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:39.808 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.615 V. Piezo Error = -9.3 V.
17-03-17 18:36:39.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35513 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35513 (-167.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35510 (-167.6 uncal um), Max = 35517 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:36:39.808 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35513, posNoise = 4, negNoise = 3
17-03-17 18:36:39.808 -07 000000610 INF: Z Motor: After move to -0.168450, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:39.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:36:39.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:39.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:39.808 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:39.808 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:39.808 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:39.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:39.808 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:39.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:39.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:39.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:39.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:39.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:39.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:39.808 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:39.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:39.818 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:39.828 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:36:39.828 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:36:39.828 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:36:39.828 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:36:39.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36975 150\n [Camera]
17-03-17 18:36:40.028 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:40.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:40.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:40.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:40.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:40.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:40.428 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:40.428 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:40.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:40.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:40.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:36:40.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36975 779
17-03-17 18:36:40.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:40.828 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:36:40.828 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:36:40.828 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:40.828 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:40.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:36:40.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:36:40.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:40.838 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:40.838 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:36:40.838 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:36:40.908 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.003063,
17-03-17 18:36:40.958 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:40.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:40.958 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:40.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:40.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:40.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:40.958 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:40.958 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 18:36:40.958 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:40.958 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 18:36:41.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:41.148 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:41.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36975 150' command took 2 ms to send, 1305 ms to get response, and 1318 ms overall
17-03-17 18:36:41.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:41.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168466397801492. ------
17-03-17 18:36:41.158 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17502 mm
17-03-17 18:36:41.158 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:41.158 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:41.158 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:36:41.158 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 18:36:41.158 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38233, sync = True, waitForSettling = False)
17-03-17 18:36:41.158 -07 000000415 INF: Z Motor: Moving to -0.175019 mm, started at -0.168466 mm, distance = -6.55 um
17-03-17 18:36:41.158 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:41.168 -07 000000415 INF: FPGA: Xmit ZDACW 38233\n [Z Motor]
17-03-17 18:36:41.168 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:41.168 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:36:41.178 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:41.178 -07 000000415 INF: FPGA: 'ZDACW 38233' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:36:41.178 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:36:41.188 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:41.188 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:36:41.188 -07 000000478 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:41.188 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:41.188 -07 000000478 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:36:41.198 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:41.198 -07 000000501 INF: FPGA: Recv ZDACR 38233
17-03-17 18:36:41.208 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:41.208 -07 000000415 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:36:41.208 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:41.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:36:41.368 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:36:41.368 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:41.368 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:36:41.368 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:36:41.368 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:41.368 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:41.368 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:36:41.368 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:41.378 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:36:41.388 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:41.388 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 18:36:41.588 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:36:41.588 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 18:36:41.608 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:41.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:41.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:41.618 -07 000000512 INF: FPGA: Recv YRDPOS 141367
17-03-17 18:36:41.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:36:41.628 -07 000000478 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:41.628 -07 000000478 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:36:41.628 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 18:36:42.578 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:42.578 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:36:42.588 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:42.588 -07 000000478 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:42.608 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:42.608 -07 000000478 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:36:42.608 -07 000000478 INF: Y Motor: Moved to 69.0273 after 1447 ms (table move)
17-03-17 18:36:42.608 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175019 mm (DAC = 38233)
17-03-17 18:36:42.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36540
17-03-17 18:36:42.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:42.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.618 -07 000000608 INF: FPGA: Recv ZSGSRD 36535
17-03-17 18:36:42.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.628 -07 000000424 INF: FPGA: Recv ZSGSRD 36535
17-03-17 18:36:42.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36531
17-03-17 18:36:42.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.648 -07 000000462 INF: FPGA: Recv ZSGSRD 36533
17-03-17 18:36:42.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.658 -07 000000448 INF: FPGA: Recv ZSGSRD 36529
17-03-17 18:36:42.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.668 -07 000000618 INF: FPGA: Recv ZSGSRD 36539
17-03-17 18:36:42.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.678 -07 000000476 INF: FPGA: Recv ZSGSRD 36536
17-03-17 18:36:42.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.688 -07 000000608 INF: FPGA: Recv ZSGSRD 36535
17-03-17 18:36:42.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:42.698 -07 000000424 INF: FPGA: Recv ZSGSRD 36539
17-03-17 18:36:42.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:42.708 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:42.708 -07 000000012 INF: FPGA: Recv ZPIEZORD 32660
17-03-17 18:36:42.718 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:42.718 -07 000000429 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.6 V.
17-03-17 18:36:42.718 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36535 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36535 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36529 (-174.1 uncal um), Max = 36540 (-174.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:36:42.718 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36535, posNoise = 5, negNoise = 6
17-03-17 18:36:42.718 -07 000000429 INF: Z Motor: After move to -0.175019, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:42.718 -07 000000429 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:36:42.718 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:42.768 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:36:42.768 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:42.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:42.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:42.768 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:42.768 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:42.768 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:42.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:42.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:42.768 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:42.778 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:42.778 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:42.788 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:36:42.788 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:36:42.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:42.838 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:43.038 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:43.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:43.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:43.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675755616, 0x0, 559484976) start.
17-03-17 18:36:43.078 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:43.078 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:43.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:36:43.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675755616, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:36:43.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:43.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:36:43.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:36:43.178 -07 000000480 INF: Autofocus start
17-03-17 18:36:43.178 -07 000000480 INF: MeasureProfile start
17-03-17 18:36:43.178 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:43.178 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:43.188 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:43.188 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:43.188 -07 000000480 INF: MeasureProfile done
17-03-17 18:36:43.188 -07 000000480 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:36:43.188 -07 000000480 INF: Autofocus finished
17-03-17 18:36:43.388 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:43.388 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:43.388 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175031942610372. ----------
17-03-17 18:36:43.388 -07 000000610 INF: Cycle	15	Tile	12	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:43.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36784, sync = True, waitForSettling = True)
17-03-17 18:36:43.398 -07 000000610 INF: Z Motor: Moving to -0.168386 mm, started at -0.175032 mm, distance = 6.65 um
17-03-17 18:36:43.398 -07 000000610 INF: FPGA: Xmit ZDACW 36784\n [Z Motor]
17-03-17 18:36:43.398 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:36:43.408 -07 000000610 INF: FPGA: 'ZDACW 36784' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:43.408 -07 000000431 INF: FPGA: Recv ZDACR 36784
17-03-17 18:36:43.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:43.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.568 -07 000000623 INF: FPGA: Recv ZSGSRD 35503
17-03-17 18:36:43.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:43.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.578 -07 000000593 INF: FPGA: Recv ZSGSRD 35502
17-03-17 18:36:43.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35506
17-03-17 18:36:43.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.598 -07 000000438 INF: FPGA: Recv ZSGSRD 35497
17-03-17 18:36:43.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.608 -07 000000431 INF: FPGA: Recv ZSGSRD 35500
17-03-17 18:36:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.618 -07 000000482 INF: FPGA: Recv ZSGSRD 35507
17-03-17 18:36:43.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.628 -07 000000593 INF: FPGA: Recv ZSGSRD 35503
17-03-17 18:36:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.638 -07 000000618 INF: FPGA: Recv ZSGSRD 35509
17-03-17 18:36:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.648 -07 000000512 INF: FPGA: Recv ZSGSRD 35498
17-03-17 18:36:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:43.658 -07 000000431 INF: FPGA: Recv ZSGSRD 35495
17-03-17 18:36:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:43.668 -07 000000482 INF: FPGA: Recv ZPIEZORD 31340
17-03-17 18:36:43.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:43.678 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.2 V.
17-03-17 18:36:43.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35502 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35502 (-167.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35495 (-167.5 uncal um), Max = 35509 (-167.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:36:43.678 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35502, posNoise = 7, negNoise = 7
17-03-17 18:36:43.678 -07 000000610 INF: Z Motor: After move to -0.168386, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:43.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:36:43.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:43.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:43.678 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:43.678 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:43.678 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:43.678 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:43.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:43.678 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:43.678 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:43.678 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:43.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:43.678 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:43.688 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:36:43.688 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:43.688 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 18:36:43.688 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:43.698 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:36:43.698 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:36:43.698 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:36:43.698 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:36:43.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36960 150\n [Camera]
17-03-17 18:36:43.898 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:44.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:36:44.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:36:44.288 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:44.298 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:44.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:36:44.298 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:36:44.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:36:44.298 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:44.298 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:44.298 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:36:44.488 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36960 779
17-03-17 18:36:44.638 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:44.688 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:36:44.688 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:36:44.688 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:44.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:36:44.688 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:36:44.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:44.688 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:44.688 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:44.688 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:36:44.698 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:36:44.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:44.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:44.828 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:44.828 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:44.828 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:36:44.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:44.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:44.828 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:44.828 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:44.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:36:45.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:45.018 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:45.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36960 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-17 18:36:45.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:45.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168395731467932. ------
17-03-17 18:36:45.018 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:45.018 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17485 mm
17-03-17 18:36:45.018 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:45.028 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:36:45.028 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:45.028 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:36:45.028 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 18:36:45.028 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:45.028 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38196, sync = True, waitForSettling = False)
17-03-17 18:36:45.028 -07 000000476 INF: Z Motor: Moving to -0.174850 mm, started at -0.168396 mm, distance = -6.45 um
17-03-17 18:36:45.138 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:45.148 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:36:45.158 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 18:36:45.158 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:45.158 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:45.158 -07 000000608 INF: Y Motor: Moving 1352 steps-32
17-03-17 18:36:45.158 -07 000000476 INF: FPGA: Xmit ZDACW 38196\n [Z Motor]
17-03-17 18:36:45.158 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:36:45.168 -07 000000476 INF: FPGA: 'ZDACW 38196' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:36:45.168 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:45.168 -07 000000501 INF: FPGA: Recv ZDACR 38196
17-03-17 18:36:45.178 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:45.178 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:45.178 -07 000000476 INF: Z Motor: MoveAbsStepped took 147 ms (did NOT wait for settling yet))
17-03-17 18:36:45.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:36:45.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:36:45.228 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:36:45.228 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:45.228 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:36:45.228 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:45.228 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:45.228 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 85 ms to get response, and 202 ms overall
17-03-17 18:36:45.228 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:45.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:36:45.238 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:36:45.238 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:36:45.548 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:36:45.548 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:36:45.588 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:45.588 -07 000000448 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:36:45.598 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:36:45.598 -07 000000608 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:45.598 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:36:45.598 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-17 18:36:46.268 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.019446,
17-03-17 18:36:46.548 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:46.548 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:36:46.558 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:46.558 -07 000000608 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:46.578 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:46.578 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:46.578 -07 000000608 INF: Y Motor: Moved to 69.8633 after 1548 ms (table move)
17-03-17 18:36:46.578 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174850 mm (DAC = 38196)
17-03-17 18:36:46.578 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.578 -07 000000623 INF: FPGA: Recv ZSGSRD 36517
17-03-17 18:36:46.588 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:36:46.588 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.588 -07 000000429 INF: FPGA: Recv ZSGSRD 36506
17-03-17 18:36:46.598 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:46.598 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.598 -07 000000476 INF: FPGA: Recv ZSGSRD 36512
17-03-17 18:36:46.608 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:46.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.618 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:46.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:46.618 -07 000000438 INF: FPGA: Recv ZSGSRD 36513
17-03-17 18:36:46.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:46.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.628 -07 000000429 INF: FPGA: Recv ZSGSRD 36514
17-03-17 18:36:46.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:46.658 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.658 -07 000000438 INF: FPGA: Recv ZSGSRD 36502
17-03-17 18:36:46.668 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:46.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.688 -07 000000476 INF: FPGA: Recv ZSGSRD 36511
17-03-17 18:36:46.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:46.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.698 -07 000000415 INF: FPGA: Recv ZSGSRD 36515
17-03-17 18:36:46.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:46.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.708 -07 000000431 INF: FPGA: Recv ZSGSRD 36509
17-03-17 18:36:46.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:46.718 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:46.718 -07 000000480 INF: FPGA: Recv ZSGSRD 36509
17-03-17 18:36:46.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:46.728 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:46.728 -07 000000478 INF: FPGA: Recv ZPIEZORD 32626
17-03-17 18:36:46.738 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:46.738 -07 000000424 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.6 V.
17-03-17 18:36:46.738 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36511 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36502 (-173.9 uncal um), Max = 36517 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:36:46.738 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36511, posNoise = 6, negNoise = 9
17-03-17 18:36:46.738 -07 000000424 INF: Z Motor: After move to -0.174850, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:46.738 -07 000000424 INF: Z Motor: Settle wait time = 1435 ms, measure time = 156 ms (allowed 150 ms), total time = 1591 ms
17-03-17 18:36:46.738 -07 000000424 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms
17-03-17 18:36:46.738 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 18:36:46.738 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:46.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:46.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:46.738 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:46.738 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:46.738 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:46.738 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:46.738 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:46.738 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:46.748 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:46.748 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:46.758 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:36:46.758 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:36:46.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:46.808 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:47.008 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:47.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:47.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:47.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:36:47.048 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:47.048 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:47.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 18:36:47.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:36:47.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:47.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:47.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:36:47.148 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:47.148 -07 000000438 INF: Autofocus start
17-03-17 18:36:47.148 -07 000000438 INF: MeasureProfile start
17-03-17 18:36:47.148 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:47.158 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:47.158 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:47.158 -07 000000438 INF: MeasureProfile done
17-03-17 18:36:47.158 -07 000000438 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:36:47.158 -07 000000438 INF: Autofocus finished
17-03-17 18:36:47.358 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:47.358 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:47.358 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174877761518969. ----------
17-03-17 18:36:47.358 -07 000000610 INF: Cycle	15	Tile	13	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:47.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36676, sync = True, waitForSettling = True)
17-03-17 18:36:47.368 -07 000000610 INF: Z Motor: Moving to -0.167892 mm, started at -0.174878 mm, distance = 6.99 um
17-03-17 18:36:47.368 -07 000000610 INF: FPGA: Xmit ZDACW 36676\n [Z Motor]
17-03-17 18:36:47.368 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:36:47.378 -07 000000610 INF: FPGA: 'ZDACW 36676' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:47.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:47.378 -07 000000501 INF: FPGA: Recv ZDACR 36676
17-03-17 18:36:47.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:47.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.538 -07 000000618 INF: FPGA: Recv ZSGSRD 35430
17-03-17 18:36:47.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:47.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35421
17-03-17 18:36:47.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35431
17-03-17 18:36:47.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.568 -07 000000462 INF: FPGA: Recv ZSGSRD 35425
17-03-17 18:36:47.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.578 -07 000000501 INF: FPGA: Recv ZSGSRD 35425
17-03-17 18:36:47.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.588 -07 000000480 INF: FPGA: Recv ZSGSRD 35426
17-03-17 18:36:47.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35419
17-03-17 18:36:47.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.608 -07 000000593 INF: FPGA: Recv ZSGSRD 35425
17-03-17 18:36:47.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.618 -07 000000424 INF: FPGA: Recv ZSGSRD 35422
17-03-17 18:36:47.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:47.628 -07 000000431 INF: FPGA: Recv ZSGSRD 35421
17-03-17 18:36:47.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:47.638 -07 000000480 INF: FPGA: Recv ZPIEZORD 31201
17-03-17 18:36:47.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:47.648 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -9.3 V.
17-03-17 18:36:47.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35424 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35425 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35419 (-167.0 uncal um), Max = 35431 (-167.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:47.648 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35424, posNoise = 7, negNoise = 5
17-03-17 18:36:47.648 -07 000000610 INF: Z Motor: After move to -0.167892, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:47.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:36:47.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:47.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:47.648 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:47.648 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:47.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:47.648 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:47.648 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:47.648 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:47.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:47.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:47.648 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:47.648 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:47.658 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:47.658 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:47.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:47.658 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:47.668 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:36:47.668 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:36:47.668 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:36:47.668 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:36:47.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36852 150\n [Camera]
17-03-17 18:36:47.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:48.268 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:48.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:48.268 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:48.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:48.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:48.268 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:48.268 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:48.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:36:48.278 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:48.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) start.
17-03-17 18:36:48.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36852 779
17-03-17 18:36:48.608 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:48.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:36:48.648 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:36:48.648 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:48.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:36:48.648 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:36:48.648 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:48.658 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:48.658 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:36:48.658 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:36:48.668 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:36:48.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:48.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:48.798 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:48.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:48.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:48.798 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:48.808 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:48.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1132859552, 0x0, 391868352) start.
17-03-17 18:36:48.818 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:48.818 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:36:48.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:36:48.998 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:48.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36852 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:36:48.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:48.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167894642920875. ------
17-03-17 18:36:49.108 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:49.108 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17419 mm
17-03-17 18:36:49.108 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:49.118 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:49.118 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:36:49.118 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:36:49.118 -07 000000429 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 18:36:49.118 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:49.118 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38052, sync = True, waitForSettling = False)
17-03-17 18:36:49.118 -07 000000593 INF: Z Motor: Moving to -0.174191 mm, started at -0.167895 mm, distance = -6.30 um
17-03-17 18:36:49.118 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:36:49.128 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:49.128 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:49.128 -07 000000429 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:49.128 -07 000000429 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:49.128 -07 000000429 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:36:49.138 -07 000000593 INF: FPGA: Xmit ZDACW 38052\n [Z Motor]
17-03-17 18:36:49.138 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:36:49.148 -07 000000593 INF: FPGA: 'ZDACW 38052' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:36:49.148 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:49.158 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:49.158 -07 000000415 INF: FPGA: Recv ZDACR 38052
17-03-17 18:36:49.168 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:49.168 -07 000000593 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:36:49.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:36:49.198 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:36:49.198 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:49.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1132859552, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:36:49.198 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:36:49.198 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:49.198 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:49.198 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:49.198 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:36:49.208 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:36:49.328 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:49.328 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 18:36:49.518 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:36:49.518 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:36:49.558 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:49.558 -07 000000438 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:36:49.568 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:49.568 -07 000000429 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:49.568 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:36:49.568 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 18:36:50.518 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:50.518 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:36:50.528 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.528 -07 000000429 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:50.548 -07 000000429 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:50.548 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:50.548 -07 000000429 INF: Y Motor: Moved to 70.6885 after 1430 ms (table move)
17-03-17 18:36:50.548 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174191 mm (DAC = 38052)
17-03-17 18:36:50.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.548 -07 000000623 INF: FPGA: Recv ZSGSRD 36402
17-03-17 18:36:50.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:50.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.558 -07 000000424 INF: FPGA: Recv ZSGSRD 36404
17-03-17 18:36:50.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.568 -07 000000593 INF: FPGA: Recv ZSGSRD 36400
17-03-17 18:36:50.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.578 -07 000000501 INF: FPGA: Recv ZSGSRD 36409
17-03-17 18:36:50.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.588 -07 000000480 INF: FPGA: Recv ZSGSRD 36407
17-03-17 18:36:50.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.598 -07 000000482 INF: FPGA: Recv ZSGSRD 36410
17-03-17 18:36:50.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.608 -07 000000012 INF: FPGA: Recv ZSGSRD 36409
17-03-17 18:36:50.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.618 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.618 -07 000000429 INF: FPGA: Recv ZSGSRD 36400
17-03-17 18:36:50.628 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.628 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.628 -07 000000448 INF: FPGA: Recv ZSGSRD 36405
17-03-17 18:36:50.638 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.638 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:50.638 -07 000000438 INF: FPGA: Recv ZSGSRD 36398
17-03-17 18:36:50.648 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.648 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:50.648 -07 000000012 INF: FPGA: Recv ZPIEZORD 32535
17-03-17 18:36:50.658 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:50.658 -07 000000618 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.806 V. Piezo Error = -8.6 V.
17-03-17 18:36:50.658 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36404 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36404 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36398 (-173.3 uncal um), Max = 36410 (-173.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:36:50.658 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36404, posNoise = 6, negNoise = 6
17-03-17 18:36:50.658 -07 000000618 INF: Z Motor: After move to -0.174191, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:50.658 -07 000000618 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:36:50.658 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:50.708 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:36:50.708 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:50.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:50.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:50.708 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:50.708 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:50.708 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:50.708 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:50.708 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:50.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:50.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:50.718 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:50.728 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:36:50.728 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:36:50.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:50.778 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:50.978 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:50.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:50.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:50.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:36:51.018 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:51.018 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:51.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:36:51.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:36:51.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:51.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:36:51.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:36:51.118 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:51.118 -07 000000623 INF: Autofocus start
17-03-17 18:36:51.118 -07 000000623 INF: MeasureProfile start
17-03-17 18:36:51.118 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:51.128 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:51.128 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:51.128 -07 000000623 INF: MeasureProfile done
17-03-17 18:36:51.128 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:36:51.128 -07 000000623 INF: Autofocus finished
17-03-17 18:36:51.328 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:51.328 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:51.328 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174190370819801. ----------
17-03-17 18:36:51.328 -07 000000610 INF: Cycle	15	Tile	14	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:51.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36585, sync = True, waitForSettling = True)
17-03-17 18:36:51.338 -07 000000610 INF: Z Motor: Moving to -0.167475 mm, started at -0.174190 mm, distance = 6.71 um
17-03-17 18:36:51.338 -07 000000610 INF: FPGA: Xmit ZDACW 36585\n [Z Motor]
17-03-17 18:36:51.338 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:36:51.348 -07 000000610 INF: FPGA: 'ZDACW 36585' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:51.348 -07 000000618 INF: FPGA: Recv ZDACR 36585
17-03-17 18:36:51.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:51.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35362
17-03-17 18:36:51.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:51.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.518 -07 000000482 INF: FPGA: Recv ZSGSRD 35367
17-03-17 18:36:51.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.528 -07 000000476 INF: FPGA: Recv ZSGSRD 35356
17-03-17 18:36:51.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.538 -07 000000429 INF: FPGA: Recv ZSGSRD 35358
17-03-17 18:36:51.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.548 -07 000000448 INF: FPGA: Recv ZSGSRD 35361
17-03-17 18:36:51.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.558 -07 000000012 INF: FPGA: Recv ZSGSRD 35363
17-03-17 18:36:51.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.568 -07 000000482 INF: FPGA: Recv ZSGSRD 35359
17-03-17 18:36:51.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.578 -07 000000480 INF: FPGA: Recv ZSGSRD 35354
17-03-17 18:36:51.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.588 -07 000000593 INF: FPGA: Recv ZSGSRD 35355
17-03-17 18:36:51.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:51.598 -07 000000623 INF: FPGA: Recv ZSGSRD 35363
17-03-17 18:36:51.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:51.608 -07 000000415 INF: FPGA: Recv ZPIEZORD 31146
17-03-17 18:36:51.608 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:51.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:51.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:51.618 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.3 V.
17-03-17 18:36:51.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35360 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35354 (-166.6 uncal um), Max = 35367 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:36:51.618 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35360, posNoise = 7, negNoise = 6
17-03-17 18:36:51.618 -07 000000610 INF: Z Motor: After move to -0.167475, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:51.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:36:51.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:51.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:51.618 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:51.618 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:51.618 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:51.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:51.618 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:51.618 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:51.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:51.618 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:51.618 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:51.618 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:51.628 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:51.628 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:51.628 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:36:51.628 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:51.628 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:36:51.638 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:36:51.638 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:36:51.638 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:36:51.638 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.999021,
17-03-17 18:36:51.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36761 150\n [Camera]
17-03-17 18:36:51.848 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:52.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:52.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:52.248 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:52.248 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:52.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:52.248 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:52.248 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:52.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:36:52.258 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:52.258 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) start.
17-03-17 18:36:52.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36761 779
17-03-17 18:36:52.588 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:52.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:36:52.648 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:36:52.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:52.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1097437288, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:36:52.648 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:36:52.648 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:52.648 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:52.648 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:36:52.658 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:52.658 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:36:52.778 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:52.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:52.778 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:52.778 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:52.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:36:52.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:52.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:52.778 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:52.778 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:52.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:36:52.968 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:52.968 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:52.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36761 150' command took 2 ms to send, 1307 ms to get response, and 1335 ms overall
17-03-17 18:36:52.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:52.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167483493343802. ------
17-03-17 18:36:52.978 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:52.978 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17419 mm
17-03-17 18:36:52.978 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:52.978 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38051, sync = True, waitForSettling = False)
17-03-17 18:36:52.978 -07 000000478 INF: Z Motor: Moving to -0.174186 mm, started at -0.167483 mm, distance = -6.70 um
17-03-17 18:36:52.978 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:52.978 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:36:52.978 -07 000000593 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 18:36:52.988 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:52.988 -07 000000478 INF: FPGA: Xmit ZDACW 38051\n [Z Motor]
17-03-17 18:36:52.988 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:36:52.998 -07 000000478 INF: FPGA: 'ZDACW 38051' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:36:52.998 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:52.998 -07 000000618 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:36:53.008 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:53.008 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:36:53.008 -07 000000593 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:53.008 -07 000000593 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:53.008 -07 000000593 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:36:53.018 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:53.018 -07 000000501 INF: FPGA: Recv ZDACR 38051
17-03-17 18:36:53.028 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:36:53.028 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:53.028 -07 000000478 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:36:53.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:36:53.168 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:36:53.168 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:53.168 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:53.178 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:36:53.178 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:36:53.178 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:53.178 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:36:53.178 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:36:53.178 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:36:53.208 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:53.208 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 18:36:53.398 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:36:53.398 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:36:53.438 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:53.438 -07 000000438 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:36:53.448 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:53.448 -07 000000593 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:53.448 -07 000000593 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:36:53.448 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec
17-03-17 18:36:54.398 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:54.398 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:36:54.408 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:54.408 -07 000000593 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:54.428 -07 000000593 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:54.428 -07 000000593 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:54.428 -07 000000593 INF: Y Motor: Moved to 71.5190 after 1443 ms (table move)
17-03-17 18:36:54.428 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174186 mm (DAC = 38051)
17-03-17 18:36:54.428 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.428 -07 000000482 INF: FPGA: Recv ZSGSRD 36402
17-03-17 18:36:54.438 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:54.438 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.438 -07 000000618 INF: FPGA: Recv ZSGSRD 36398
17-03-17 18:36:54.448 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.448 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.448 -07 000000623 INF: FPGA: Recv ZSGSRD 36397
17-03-17 18:36:54.458 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.458 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.458 -07 000000608 INF: FPGA: Recv ZSGSRD 36405
17-03-17 18:36:54.468 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.468 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.468 -07 000000480 INF: FPGA: Recv ZSGSRD 36412
17-03-17 18:36:54.478 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.478 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.478 -07 000000438 INF: FPGA: Recv ZSGSRD 36411
17-03-17 18:36:54.488 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.488 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36406
17-03-17 18:36:54.498 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.498 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.498 -07 000000431 INF: FPGA: Recv ZSGSRD 36397
17-03-17 18:36:54.508 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.508 -07 000000480 INF: FPGA: Recv ZSGSRD 36408
17-03-17 18:36:54.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:54.518 -07 000000448 INF: FPGA: Recv ZSGSRD 36401
17-03-17 18:36:54.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.528 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:54.528 -07 000000478 INF: FPGA: Recv ZPIEZORD 32513
17-03-17 18:36:54.538 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:54.538 -07 000000429 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.806 V. Piezo Error = -8.6 V.
17-03-17 18:36:54.538 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36404 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36404 (-173.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36397 (-173.3 uncal um), Max = 36412 (-173.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:36:54.538 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36404, posNoise = 8, negNoise = 7
17-03-17 18:36:54.538 -07 000000429 INF: Z Motor: After move to -0.174186, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:54.538 -07 000000429 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:36:54.538 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:54.588 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 18:36:54.588 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:54.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:54.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:54.588 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:54.588 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:54.588 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:54.588 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:54.588 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:54.588 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:54.598 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:54.598 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:54.608 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:36:54.608 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:36:54.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:54.658 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:54.858 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:54.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:54.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:54.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:36:54.898 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:54.898 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:54.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 18:36:54.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:36:54.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:54.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:36:54.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:36:54.998 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:54.998 -07 000000593 INF: Autofocus start
17-03-17 18:36:54.998 -07 000000593 INF: MeasureProfile start
17-03-17 18:36:54.998 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:55.008 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:36:55.008 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:55.018 -07 000000593 INF: MeasureProfile done
17-03-17 18:36:55.018 -07 000000593 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:36:55.018 -07 000000593 INF: Autofocus finished
17-03-17 18:36:55.208 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:55.208 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:55.218 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174190370819801. ----------
17-03-17 18:36:55.218 -07 000000610 INF: Cycle	15	Tile	15	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:55.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36583, sync = True, waitForSettling = True)
17-03-17 18:36:55.218 -07 000000610 INF: Z Motor: Moving to -0.167466 mm, started at -0.174190 mm, distance = 6.72 um
17-03-17 18:36:55.218 -07 000000610 INF: FPGA: Xmit ZDACW 36583\n [Z Motor]
17-03-17 18:36:55.218 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:36:55.228 -07 000000610 INF: FPGA: 'ZDACW 36583' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:55.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:55.228 -07 000000512 INF: FPGA: Recv ZDACR 36583
17-03-17 18:36:55.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.388 -07 000000623 INF: FPGA: Recv ZSGSRD 35361
17-03-17 18:36:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35360
17-03-17 18:36:55.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.408 -07 000000415 INF: FPGA: Recv ZSGSRD 35359
17-03-17 18:36:55.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.418 -07 000000424 INF: FPGA: Recv ZSGSRD 35357
17-03-17 18:36:55.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.428 -07 000000501 INF: FPGA: Recv ZSGSRD 35355
17-03-17 18:36:55.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.438 -07 000000608 INF: FPGA: Recv ZSGSRD 35362
17-03-17 18:36:55.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.448 -07 000000512 INF: FPGA: Recv ZSGSRD 35357
17-03-17 18:36:55.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.458 -07 000000478 INF: FPGA: Recv ZSGSRD 35363
17-03-17 18:36:55.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35361
17-03-17 18:36:55.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:55.478 -07 000000618 INF: FPGA: Recv ZSGSRD 35354
17-03-17 18:36:55.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:55.488 -07 000000482 INF: FPGA: Recv ZPIEZORD 31156
17-03-17 18:36:55.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:55.498 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.582 V. Piezo Error = -9.3 V.
17-03-17 18:36:55.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35359 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35354 (-166.6 uncal um), Max = 35363 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:36:55.498 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35359, posNoise = 4, negNoise = 5
17-03-17 18:36:55.498 -07 000000610 INF: Z Motor: After move to -0.167466, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:55.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:36:55.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:55.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:55.498 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:55.498 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:55.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:55.498 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:55.498 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:55.498 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:55.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:55.498 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:55.498 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:55.498 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:55.508 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:55.508 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:55.508 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:55.508 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:55.518 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:36:55.518 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:36:55.518 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:36:55.518 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:36:55.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36760 150\n [Camera]
17-03-17 18:36:55.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:36:56.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:36:56.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:36:56.118 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:56.118 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:56.118 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2353084232, 0x0, 391868352) start.
17-03-17 18:36:56.118 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:36:56.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:36:56.118 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:56.118 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:56.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:36:56.298 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36760 779
17-03-17 18:36:56.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:36:56.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:36:56.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:36:56.508 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:56.508 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:56.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2353084232, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:36:56.508 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:36:56.508 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:56.518 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:36:56.518 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:36:56.518 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:36:56.608 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:36:56.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:36:56.638 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:36:56.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:36:56.638 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:36:56.638 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:36:56.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:36:56.648 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:36:56.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:36:56.648 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:36:56.648 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:36:56.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:36:56.838 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:36:56.838 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:36:56.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36760 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-17 18:36:56.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:36:56.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167477069131661. ------
17-03-17 18:36:56.838 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:56.838 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17344 mm
17-03-17 18:36:56.838 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:36:56.958 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:56.958 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 18:36:56.958 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:36:56.958 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37888, sync = True, waitForSettling = False)
17-03-17 18:36:56.958 -07 000000476 INF: Z Motor: Moving to -0.173440 mm, started at -0.167477 mm, distance = -5.96 um
17-03-17 18:36:56.968 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:36:56.968 -07 000000431 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 18:36:56.968 -07 000000476 INF: FPGA: Xmit ZDACW 37888\n [Z Motor]
17-03-17 18:36:56.968 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:36:56.978 -07 000000476 INF: FPGA: 'ZDACW 37888' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:56.978 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:56.978 -07 000000438 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:36:56.988 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:56.988 -07 000000431 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:56.988 -07 000000431 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:36:56.988 -07 000000431 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:36:56.988 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:56.988 -07 000000593 INF: FPGA: Recv ZDACR 37888
17-03-17 18:36:56.998 -07 000000476 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:36:56.998 -07 000000476 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 18:36:57.008 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:36:57.008 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.985358,
17-03-17 18:36:57.048 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:36:57.048 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:36:57.048 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:57.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:36:57.048 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:36:57.048 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:57.048 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:36:57.058 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:36:57.058 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:36:57.058 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:36:57.158 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:36:57.168 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 205 ms overall
17-03-17 18:36:57.378 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:36:57.378 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:36:57.418 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:57.418 -07 000000012 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:36:57.428 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:57.428 -07 000000431 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:57.428 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:36:57.428 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 18:36:58.378 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:36:58.378 -07 000000424 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:36:58.388 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:58.388 -07 000000431 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:36:58.408 -07 000000431 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:36:58.408 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:36:58.408 -07 000000431 INF: Y Motor: Moved to 72.3496 after 1442 ms (table move)
17-03-17 18:36:58.408 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173440 mm (DAC = 37888)
17-03-17 18:36:58.408 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.418 -07 000000501 INF: FPGA: Recv ZSGSRD 36288
17-03-17 18:36:58.418 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 18:36:58.418 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.418 -07 000000478 INF: FPGA: Recv ZSGSRD 36287
17-03-17 18:36:58.428 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:36:58.428 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.428 -07 000000482 INF: FPGA: Recv ZSGSRD 36282
17-03-17 18:36:58.438 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.438 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.438 -07 000000608 INF: FPGA: Recv ZSGSRD 36293
17-03-17 18:36:58.448 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.448 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.448 -07 000000476 INF: FPGA: Recv ZSGSRD 36289
17-03-17 18:36:58.458 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.458 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.458 -07 000000424 INF: FPGA: Recv ZSGSRD 36292
17-03-17 18:36:58.468 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.468 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36296
17-03-17 18:36:58.478 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.478 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.478 -07 000000501 INF: FPGA: Recv ZSGSRD 36283
17-03-17 18:36:58.488 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.488 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.488 -07 000000476 INF: FPGA: Recv ZSGSRD 36285
17-03-17 18:36:58.498 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:58.498 -07 000000438 INF: FPGA: Recv ZSGSRD 36287
17-03-17 18:36:58.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.508 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:58.508 -07 000000431 INF: FPGA: Recv ZPIEZORD 32392
17-03-17 18:36:58.518 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:58.518 -07 000000480 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.6 V.
17-03-17 18:36:58.518 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36288 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36288 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36282 (-172.5 uncal um), Max = 36296 (-172.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:36:58.518 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36288, posNoise = 8, negNoise = 6
17-03-17 18:36:58.518 -07 000000480 INF: Z Motor: After move to -0.173440, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:58.518 -07 000000480 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-17 18:36:58.518 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:36:58.568 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-17 18:36:58.568 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:36:58.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:58.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:58.568 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:58.568 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:36:58.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:58.568 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:58.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:36:58.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:36:58.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:36:58.578 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:36:58.588 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:36:58.588 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:36:58.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:36:58.638 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:36:58.838 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:36:58.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:36:58.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:36:58.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:36:58.878 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:36:58.878 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:36:58.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 282 ms to get response, and 289 ms overall
17-03-17 18:36:58.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:36:58.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:36:58.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:36:58.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:36:58.978 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:36:58.978 -07 000000448 INF: Autofocus start
17-03-17 18:36:58.978 -07 000000448 INF: MeasureProfile start
17-03-17 18:36:58.978 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:36:58.988 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:36:58.988 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:36:58.988 -07 000000448 INF: MeasureProfile done
17-03-17 18:36:58.988 -07 000000448 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:36:58.988 -07 000000448 INF: Autofocus finished
17-03-17 18:36:59.188 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:36:59.188 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:36:59.188 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173445162211357. ----------
17-03-17 18:36:59.188 -07 000000610 INF: Cycle	15	Tile	16	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:36:59.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36385, sync = True, waitForSettling = True)
17-03-17 18:36:59.198 -07 000000610 INF: Z Motor: Moving to -0.166560 mm, started at -0.173445 mm, distance = 6.89 um
17-03-17 18:36:59.198 -07 000000610 INF: FPGA: Xmit ZDACW 36385\n [Z Motor]
17-03-17 18:36:59.198 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:36:59.208 -07 000000610 INF: FPGA: 'ZDACW 36385' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:36:59.208 -07 000000478 INF: FPGA: Recv ZDACR 36385
17-03-17 18:36:59.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:36:59.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.368 -07 000000012 INF: FPGA: Recv ZSGSRD 35220
17-03-17 18:36:59.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:36:59.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.378 -07 000000501 INF: FPGA: Recv ZSGSRD 35213
17-03-17 18:36:59.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35223
17-03-17 18:36:59.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.398 -07 000000608 INF: FPGA: Recv ZSGSRD 35218
17-03-17 18:36:59.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.408 -07 000000593 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:36:59.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35222
17-03-17 18:36:59.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.428 -07 000000476 INF: FPGA: Recv ZSGSRD 35216
17-03-17 18:36:59.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.438 -07 000000482 INF: FPGA: Recv ZSGSRD 35220
17-03-17 18:36:59.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.448 -07 000000501 INF: FPGA: Recv ZSGSRD 35211
17-03-17 18:36:59.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:36:59.458 -07 000000608 INF: FPGA: Recv ZSGSRD 35210
17-03-17 18:36:59.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:36:59.468 -07 000000478 INF: FPGA: Recv ZPIEZORD 30982
17-03-17 18:36:59.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:36:59.478 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.3 V.
17-03-17 18:36:59.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35217 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35210 (-165.7 uncal um), Max = 35223 (-165.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:36:59.478 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35217, posNoise = 6, negNoise = 7
17-03-17 18:36:59.478 -07 000000610 INF: Z Motor: After move to -0.166560, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:36:59.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:36:59.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:36:59.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:36:59.478 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:36:59.478 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:36:59.478 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:36:59.478 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:36:59.478 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:36:59.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:36:59.478 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:36:59.478 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:36:59.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:36:59.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:36:59.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:36:59.478 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:36:59.488 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:36:59.488 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:36:59.498 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:36:59.498 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:36:59.498 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:36:59.498 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:36:59.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36562 150\n [Camera]
17-03-17 18:36:59.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:00.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:00.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:00.098 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:00.098 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:00.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:00.098 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:00.108 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:00.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:37:00.108 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:00.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 18:37:00.288 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36562 779
17-03-17 18:37:00.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:00.488 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:37:00.488 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:37:00.488 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:00.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:37:00.488 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:37:00.488 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:00.498 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:00.498 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:00.498 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:37:00.498 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:37:00.628 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:00.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:00.628 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:00.628 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:00.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:00.638 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:00.638 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:00.638 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:37:00.648 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:00.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:37:00.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:37:00.818 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:00.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36562 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-17 18:37:00.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:37:00.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166564831007531. ------
17-03-17 18:37:00.948 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17311 mm
17-03-17 18:37:00.948 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:00.948 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:00.948 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:37:00.948 -07 000000608 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 18:37:00.948 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37815, sync = True, waitForSettling = False)
17-03-17 18:37:00.948 -07 000000478 INF: Z Motor: Moving to -0.173106 mm, started at -0.166565 mm, distance = -6.54 um
17-03-17 18:37:00.948 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:00.958 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:37:00.958 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:00.958 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:37:00.968 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:37:00.968 -07 000000608 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:00.968 -07 000000608 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:00.968 -07 000000608 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:37:00.968 -07 000000478 INF: FPGA: Xmit ZDACW 37815\n [Z Motor]
17-03-17 18:37:00.968 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:37:00.978 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:00.978 -07 000000478 INF: FPGA: 'ZDACW 37815' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:37:00.988 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:00.998 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:00.998 -07 000000482 INF: FPGA: Recv ZDACR 37815
17-03-17 18:37:01.008 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:01.008 -07 000000478 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:37:01.018 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:37:01.018 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:37:01.018 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:01.028 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:01.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:37:01.028 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:37:01.028 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:01.028 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:01.028 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:37:01.038 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:37:01.178 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:01.178 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:37:01.358 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:37:01.358 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:37:01.398 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:01.398 -07 000000618 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:37:01.408 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:01.408 -07 000000608 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:01.408 -07 000000608 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 18:37:01.408 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 18:37:01.608 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:01.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:02.358 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:02.358 -07 000000429 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:37:02.368 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:02.368 -07 000000608 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:02.388 -07 000000608 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:02.388 -07 000000608 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:02.388 -07 000000608 INF: Y Motor: Moved to 73.1758 after 1432 ms (table move)
17-03-17 18:37:02.388 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.983999,
17-03-17 18:37:02.388 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173106 mm (DAC = 37815)
17-03-17 18:37:02.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.408 -07 000000501 INF: FPGA: Recv ZSGSRD 36240
17-03-17 18:37:02.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:37:02.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.418 -07 000000478 INF: FPGA: Recv ZSGSRD 36244
17-03-17 18:37:02.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:02.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.448 -07 000000476 INF: FPGA: Recv ZSGSRD 36241
17-03-17 18:37:02.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:02.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.468 -07 000000478 INF: FPGA: Recv ZSGSRD 36238
17-03-17 18:37:02.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:37:02.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.478 -07 000000012 INF: FPGA: Recv ZSGSRD 36228
17-03-17 18:37:02.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:02.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36236
17-03-17 18:37:02.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:02.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.498 -07 000000480 INF: FPGA: Recv ZSGSRD 36242
17-03-17 18:37:02.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:02.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.508 -07 000000424 INF: FPGA: Recv ZSGSRD 36241
17-03-17 18:37:02.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:02.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.518 -07 000000462 INF: FPGA: Recv ZSGSRD 36242
17-03-17 18:37:02.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:02.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:02.528 -07 000000501 INF: FPGA: Recv ZSGSRD 36236
17-03-17 18:37:02.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:02.538 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:02.538 -07 000000480 INF: FPGA: Recv ZPIEZORD 32319
17-03-17 18:37:02.548 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:02.548 -07 000000431 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -8.7 V.
17-03-17 18:37:02.548 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36239 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36240 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36228 (-172.2 uncal um), Max = 36244 (-172.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:37:02.548 -07 000000431 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36239, posNoise = 5, negNoise = 11
17-03-17 18:37:02.548 -07 000000431 INF: Z Motor: After move to -0.173106, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:02.548 -07 000000431 INF: Z Motor: Settle wait time = 1435 ms, measure time = 156 ms (allowed 150 ms), total time = 1591 ms
17-03-17 18:37:02.548 -07 000000431 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms
17-03-17 18:37:02.548 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 18:37:02.548 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:02.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:02.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:02.548 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:02.548 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:02.548 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:02.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:02.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:02.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:02.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:02.558 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:02.568 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:37:02.568 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:37:02.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:02.618 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:37:02.818 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:37:02.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:37:02.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:02.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:37:02.848 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:02.858 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:02.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:37:02.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:37:02.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:02.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:37:02.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:37:02.958 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:02.958 -07 000000476 INF: Autofocus start
17-03-17 18:37:02.958 -07 000000476 INF: MeasureProfile start
17-03-17 18:37:02.958 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:02.968 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:02.968 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:02.978 -07 000000476 INF: MeasureProfile done
17-03-17 18:37:02.978 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:37:02.978 -07 000000476 INF: Autofocus finished
17-03-17 18:37:03.168 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:03.168 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:03.168 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17313037581641. ----------
17-03-17 18:37:03.178 -07 000000610 INF: Cycle	15	Tile	17	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:03.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36330, sync = True, waitForSettling = True)
17-03-17 18:37:03.178 -07 000000610 INF: Z Motor: Moving to -0.166308 mm, started at -0.173130 mm, distance = 6.82 um
17-03-17 18:37:03.178 -07 000000610 INF: FPGA: Xmit ZDACW 36330\n [Z Motor]
17-03-17 18:37:03.178 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:37:03.188 -07 000000610 INF: FPGA: 'ZDACW 36330' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:03.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:03.188 -07 000000478 INF: FPGA: Recv ZDACR 36330
17-03-17 18:37:03.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:03.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.348 -07 000000448 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:37:03.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.358 -07 000000438 INF: FPGA: Recv ZSGSRD 35179
17-03-17 18:37:03.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.368 -07 000000476 INF: FPGA: Recv ZSGSRD 35176
17-03-17 18:37:03.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.378 -07 000000501 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:37:03.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.388 -07 000000478 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:37:03.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.398 -07 000000424 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:37:03.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.408 -07 000000429 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:37:03.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35174
17-03-17 18:37:03.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.428 -07 000000501 INF: FPGA: Recv ZSGSRD 35177
17-03-17 18:37:03.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:03.438 -07 000000618 INF: FPGA: Recv ZSGSRD 35176
17-03-17 18:37:03.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:03.448 -07 000000424 INF: FPGA: Recv ZPIEZORD 30968
17-03-17 18:37:03.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:03.458 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.3 V.
17-03-17 18:37:03.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35178 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35178 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35174 (-165.4 uncal um), Max = 35183 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:37:03.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35178, posNoise = 5, negNoise = 4
17-03-17 18:37:03.458 -07 000000610 INF: Z Motor: After move to -0.166308, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:03.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:37:03.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:03.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:03.458 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:03.458 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:03.458 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:03.458 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:03.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:03.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:03.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:03.458 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:03.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:03.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:03.468 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:03.468 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:03.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:03.468 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:03.478 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:37:03.478 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:37:03.478 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:37:03.478 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:37:03.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36507 150\n [Camera]
17-03-17 18:37:03.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:04.068 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:04.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:04.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:04.068 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:04.068 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:37:04.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:04.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:04.078 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:04.078 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:04.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:37:04.258 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36507 779
17-03-17 18:37:04.418 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:04.468 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:37:04.468 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:37:04.468 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:04.468 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:37:04.468 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:37:04.468 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:04.478 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:37:04.478 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:37:04.478 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:04.478 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:37:04.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:04.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:04.598 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:04.608 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:04.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 18:37:04.608 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:04.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:04.608 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:04.608 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:04.608 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 18:37:04.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:37:04.798 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:04.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36507 150' command took 2 ms to send, 1314 ms to get response, and 1321 ms overall
17-03-17 18:37:04.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:37:04.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166314286734002. ------
17-03-17 18:37:04.798 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:04.798 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17269 mm
17-03-17 18:37:04.798 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:04.808 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:04.808 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:37:04.808 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:04.808 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37725, sync = True, waitForSettling = False)
17-03-17 18:37:04.808 -07 000000478 INF: Z Motor: Moving to -0.172694 mm, started at -0.166314 mm, distance = -6.38 um
17-03-17 18:37:04.808 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:37:04.808 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 18:37:04.818 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:04.818 -07 000000424 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:37:04.828 -07 000000478 INF: FPGA: Xmit ZDACW 37725\n [Z Motor]
17-03-17 18:37:04.828 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:37:04.828 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:04.828 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:37:04.828 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:04.828 -07 000000462 INF: Y Motor: Moving 1354 steps-34
17-03-17 18:37:04.838 -07 000000478 INF: FPGA: 'ZDACW 37725' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:37:04.838 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:04.848 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:04.848 -07 000000623 INF: FPGA: Recv ZDACR 37725
17-03-17 18:37:04.858 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:37:04.858 -07 000000478 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:37:04.988 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:37:04.988 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:37:04.988 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:04.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:37:04.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:37:04.998 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:04.998 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:04.998 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:37:04.998 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:37:04.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:37:05.008 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:05.008 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:37:05.208 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:37:05.208 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:37:05.238 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:05.238 -07 000000480 INF: FPGA: Recv YRDPOS 151568
17-03-17 18:37:05.248 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:05.248 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:05.248 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:37:05.248 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.847 mm, average velocity = 2.200 mm/sec
17-03-17 18:37:06.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:06.198 -07 000000482 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:37:06.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:06.208 -07 000000462 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:06.218 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:06.218 -07 000000462 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:37:06.218 -07 000000462 INF: Y Motor: Moved to 74.0083 after 1411 ms (table move)
17-03-17 18:37:06.218 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172694 mm (DAC = 37725)
17-03-17 18:37:06.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.228 -07 000000424 INF: FPGA: Recv ZSGSRD 36168
17-03-17 18:37:06.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:06.238 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.238 -07 000000512 INF: FPGA: Recv ZSGSRD 36168
17-03-17 18:37:06.248 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.248 -07 000000448 INF: FPGA: Recv ZSGSRD 36170
17-03-17 18:37:06.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.258 -07 000000623 INF: FPGA: Recv ZSGSRD 36176
17-03-17 18:37:06.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.268 -07 000000618 INF: FPGA: Recv ZSGSRD 36170
17-03-17 18:37:06.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.278 -07 000000608 INF: FPGA: Recv ZSGSRD 36180
17-03-17 18:37:06.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.288 -07 000000012 INF: FPGA: Recv ZSGSRD 36176
17-03-17 18:37:06.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.298 -07 000000478 INF: FPGA: Recv ZSGSRD 36176
17-03-17 18:37:06.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36174
17-03-17 18:37:06.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:06.318 -07 000000462 INF: FPGA: Recv ZSGSRD 36162
17-03-17 18:37:06.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.328 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:06.328 -07 000000438 INF: FPGA: Recv ZPIEZORD 32298
17-03-17 18:37:06.338 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:06.338 -07 000000476 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.6 V.
17-03-17 18:37:06.338 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36172 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36172 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36162 (-171.8 uncal um), Max = 36180 (-171.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:37:06.338 -07 000000476 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36172, posNoise = 8, negNoise = 10
17-03-17 18:37:06.338 -07 000000476 INF: Z Motor: After move to -0.172694, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:06.338 -07 000000476 INF: Z Motor: Settle wait time = 1415 ms, measure time = 111 ms (allowed 150 ms), total time = 1526 ms
17-03-17 18:37:06.338 -07 000000476 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:06.378 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1570 ms
17-03-17 18:37:06.378 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:06.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:06.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:06.378 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:06.378 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:06.378 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:06.378 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:06.388 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:06.388 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:06.388 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:06.388 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:06.398 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:37:06.398 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:37:06.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:06.438 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:06.608 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:06.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:06.638 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:06.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:06.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:06.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 18:37:06.678 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:06.678 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:06.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:37:06.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:37:06.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:06.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:37:06.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:37:06.878 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:06.878 -07 000000431 INF: Autofocus start
17-03-17 18:37:06.878 -07 000000431 INF: MeasureProfile start
17-03-17 18:37:06.878 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:06.888 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:06.888 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:06.888 -07 000000431 INF: MeasureProfile done
17-03-17 18:37:06.888 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:37:06.888 -07 000000431 INF: Autofocus finished
17-03-17 18:37:07.088 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:07.088 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:37:07.088 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172699953602912. ----------
17-03-17 18:37:07.088 -07 000000610 INF: Cycle	15	Tile	18	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:07.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36258, sync = True, waitForSettling = True)
17-03-17 18:37:07.098 -07 000000610 INF: Z Motor: Moving to -0.165978 mm, started at -0.172700 mm, distance = 6.72 um
17-03-17 18:37:07.098 -07 000000610 INF: FPGA: Xmit ZDACW 36258\n [Z Motor]
17-03-17 18:37:07.098 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:37:07.108 -07 000000610 INF: FPGA: 'ZDACW 36258' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:07.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:07.108 -07 000000462 INF: FPGA: Recv ZDACR 36258
17-03-17 18:37:07.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35129
17-03-17 18:37:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35134
17-03-17 18:37:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:37:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.298 -07 000000424 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:37:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.308 -07 000000462 INF: FPGA: Recv ZSGSRD 35130
17-03-17 18:37:07.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:37:07.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.328 -07 000000438 INF: FPGA: Recv ZSGSRD 35134
17-03-17 18:37:07.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.338 -07 000000431 INF: FPGA: Recv ZSGSRD 35122
17-03-17 18:37:07.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.348 -07 000000012 INF: FPGA: Recv ZSGSRD 35126
17-03-17 18:37:07.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:07.358 -07 000000618 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:37:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:07.368 -07 000000478 INF: FPGA: Recv ZPIEZORD 30864
17-03-17 18:37:07.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:07.378 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.4 V.
17-03-17 18:37:07.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35128 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35127 (-165.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35122 (-165.1 uncal um), Max = 35134 (-165.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:37:07.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35128, posNoise = 6, negNoise = 6
17-03-17 18:37:07.378 -07 000000610 INF: Z Motor: After move to -0.165978, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:07.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:37:07.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:07.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:07.378 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:07.378 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:07.378 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:07.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:07.378 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:07.378 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:07.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:07.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:07.378 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:07.378 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:07.388 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:07.388 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:07.388 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:07.388 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:07.398 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:37:07.398 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:37:07.398 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:37:07.398 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:37:07.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36435 150\n [Camera]
17-03-17 18:37:07.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:07.788 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.978563,
17-03-17 18:37:07.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:37:07.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:37:07.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:07.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:07.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 18:37:07.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:37:07.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:37:07.998 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:07.998 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:07.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1057820720, 0x0, 418435064) start.
17-03-17 18:37:08.188 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36435 779
17-03-17 18:37:08.338 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:08.398 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:37:08.398 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:37:08.398 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:08.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1057820720, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:37:08.398 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:37:08.398 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:08.398 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:08.398 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:37:08.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:08.408 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:37:08.528 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:08.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:08.528 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:08.528 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:08.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1093242984, 0x0, 391868352) start.
17-03-17 18:37:08.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:08.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:08.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:08.528 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:08.528 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1145540312, 0x0, 418435064) start.
17-03-17 18:37:08.718 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:37:08.718 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:08.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36435 150' command took 2 ms to send, 1306 ms to get response, and 1318 ms overall
17-03-17 18:37:08.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:37:08.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165993076126914. ------
17-03-17 18:37:08.858 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17235 mm
17-03-17 18:37:08.858 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:08.858 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:08.858 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37649, sync = True, waitForSettling = False)
17-03-17 18:37:08.858 -07 000000608 INF: Z Motor: Moving to -0.172346 mm, started at -0.165993 mm, distance = -6.35 um
17-03-17 18:37:08.858 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:37:08.858 -07 000000431 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 18:37:08.858 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:08.868 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:08.868 -07 000000608 INF: FPGA: Xmit ZDACW 37649\n [Z Motor]
17-03-17 18:37:08.868 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:37:08.878 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:08.878 -07 000000608 INF: FPGA: 'ZDACW 37649' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:37:08.878 -07 000000618 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:37:08.888 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:08.888 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:37:08.888 -07 000000431 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:08.888 -07 000000431 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:08.888 -07 000000431 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:37:08.898 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:08.898 -07 000000482 INF: FPGA: Recv ZDACR 37649
17-03-17 18:37:08.908 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:08.908 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:08.908 -07 000000608 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:37:08.938 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1145540312, 0x0, 418435064) end. Duration was 409 ms.
17-03-17 18:37:08.938 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:37:08.938 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:08.938 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1093242984, 0x0, 391868352) end. Duration was 413 ms.
17-03-17 18:37:08.938 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:37:08.938 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:08.948 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:08.948 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:37:08.948 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-17 18:37:08.948 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 18:37:09.088 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:09.088 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:37:09.278 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:37:09.278 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:37:09.298 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:09.308 -07 000000012 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:37:09.308 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:37:09.308 -07 000000431 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:09.308 -07 000000431 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 18:37:09.308 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 18:37:10.258 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:10.258 -07 000000482 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:37:10.268 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:10.268 -07 000000431 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:10.278 -07 000000431 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:10.278 -07 000000431 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:10.278 -07 000000431 INF: Y Motor: Moved to 74.8320 after 1419 ms (table move)
17-03-17 18:37:10.278 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172346 mm (DAC = 37649)
17-03-17 18:37:10.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.288 -07 000000476 INF: FPGA: Recv ZSGSRD 36116
17-03-17 18:37:10.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:37:10.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.288 -07 000000012 INF: FPGA: Recv ZSGSRD 36124
17-03-17 18:37:10.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:10.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.298 -07 000000618 INF: FPGA: Recv ZSGSRD 36121
17-03-17 18:37:10.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36113
17-03-17 18:37:10.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:37:10.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.328 -07 000000618 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:37:10.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.338 -07 000000476 INF: FPGA: Recv ZSGSRD 36117
17-03-17 18:37:10.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36127
17-03-17 18:37:10.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.358 -07 000000482 INF: FPGA: Recv ZSGSRD 36126
17-03-17 18:37:10.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.368 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:10.368 -07 000000415 INF: FPGA: Recv ZSGSRD 36119
17-03-17 18:37:10.378 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.378 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:10.378 -07 000000501 INF: FPGA: Recv ZPIEZORD 32180
17-03-17 18:37:10.388 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:10.388 -07 000000478 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.745 V. Piezo Error = -8.7 V.
17-03-17 18:37:10.388 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36120 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36118 (-171.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36113 (-171.4 uncal um), Max = 36127 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:37:10.388 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36120, posNoise = 7, negNoise = 7
17-03-17 18:37:10.388 -07 000000478 INF: Z Motor: After move to -0.172346, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:10.388 -07 000000478 INF: Z Motor: Settle wait time = 1423 ms, measure time = 102 ms (allowed 150 ms), total time = 1525 ms
17-03-17 18:37:10.388 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:10.438 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:37:10.438 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:10.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:10.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:10.438 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:10.438 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:10.438 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:10.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:10.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:10.438 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:10.448 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:10.448 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:10.458 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:37:10.458 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:37:10.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:10.508 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:10.708 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:10.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:10.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:10.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:37:10.748 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:10.748 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:10.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:37:10.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:37:10.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:10.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:10.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:37:10.948 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:10.948 -07 000000476 INF: Autofocus start
17-03-17 18:37:10.948 -07 000000476 INF: MeasureProfile start
17-03-17 18:37:10.948 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:10.958 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:10.958 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:10.958 -07 000000476 INF: MeasureProfile done
17-03-17 18:37:10.958 -07 000000476 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:37:10.958 -07 000000476 INF: Autofocus finished
17-03-17 18:37:11.158 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:11.158 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:11.158 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172365894571541. ----------
17-03-17 18:37:11.158 -07 000000610 INF: Cycle	15	Tile	19	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:11.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36129, sync = True, waitForSettling = True)
17-03-17 18:37:11.168 -07 000000610 INF: Z Motor: Moving to -0.165388 mm, started at -0.172366 mm, distance = 6.98 um
17-03-17 18:37:11.168 -07 000000610 INF: FPGA: Xmit ZDACW 36129\n [Z Motor]
17-03-17 18:37:11.168 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:37:11.178 -07 000000610 INF: FPGA: 'ZDACW 36129' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:11.178 -07 000000431 INF: FPGA: Recv ZDACR 36129
17-03-17 18:37:11.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:11.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35028
17-03-17 18:37:11.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:11.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.348 -07 000000501 INF: FPGA: Recv ZSGSRD 35043
17-03-17 18:37:11.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.358 -07 000000482 INF: FPGA: Recv ZSGSRD 35039
17-03-17 18:37:11.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35032
17-03-17 18:37:11.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.378 -07 000000431 INF: FPGA: Recv ZSGSRD 35034
17-03-17 18:37:11.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.388 -07 000000623 INF: FPGA: Recv ZSGSRD 35038
17-03-17 18:37:11.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.398 -07 000000501 INF: FPGA: Recv ZSGSRD 35033
17-03-17 18:37:11.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.408 -07 000000482 INF: FPGA: Recv ZSGSRD 35033
17-03-17 18:37:11.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.418 -07 000000593 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:37:11.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:11.428 -07 000000608 INF: FPGA: Recv ZSGSRD 35039
17-03-17 18:37:11.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:11.438 -07 000000462 INF: FPGA: Recv ZPIEZORD 30725
17-03-17 18:37:11.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:11.448 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.513 V. Piezo Error = -9.5 V.
17-03-17 18:37:11.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35036 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35035 (-164.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35028 (-164.5 uncal um), Max = 35043 (-164.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:37:11.448 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35036, posNoise = 7, negNoise = 8
17-03-17 18:37:11.448 -07 000000610 INF: Z Motor: After move to -0.165388, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:11.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:37:11.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:11.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:11.448 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:11.448 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:11.448 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:11.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:11.448 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:11.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:11.448 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:11.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:11.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:11.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:11.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:11.458 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:11.458 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:11.458 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:11.468 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:37:11.468 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:37:11.468 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:37:11.468 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:37:11.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36306 150\n [Camera]
17-03-17 18:37:11.608 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:11.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:11.668 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:12.068 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:12.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:12.068 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:12.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:12.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:12.068 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:12.068 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:12.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:37:12.068 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:12.068 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1057820720, 0x0, 391868352) start.
17-03-17 18:37:12.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36306 779
17-03-17 18:37:12.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:12.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:37:12.468 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:37:12.468 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:12.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1057820720, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:37:12.468 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:37:12.468 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:12.468 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:12.478 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:12.478 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:37:12.478 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:37:12.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:37:12.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:37:12.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:12.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:12.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:37:12.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:37:12.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:37:12.608 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:12.608 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:12.608 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 18:37:12.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:37:12.788 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:12.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36306 150' command took 4 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:37:12.988 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:37:12.988 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:37:12.988 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:12.998 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:12.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:37:12.998 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:37:12.998 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:12.998 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:37:13.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:37:13.008 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:37:13.128 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:37:13.158 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.974486,
17-03-17 18:37:13.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 159 ms.
17-03-17 18:37:13.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:37:13.208 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:37:13.208 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:37:13.208 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:37:13.218 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 18:37:13.218 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:37:13.218 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:37:13.718 -07 000000480 INF: FPGA: Recv EMIN
17-03-17 18:37:13.718 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 504 ms overall
17-03-17 18:37:13.718 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:37:13.718 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 18:37:13.728 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:13.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:13.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165402048609872. ------
17-03-17 18:37:13.728 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:13.728 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14014 mm
17-03-17 18:37:13.728 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:13.728 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:13.728 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30613, sync = True, waitForSettling = False)
17-03-17 18:37:13.738 -07 000000429 INF: Z Motor: Moving to -0.140137 mm, started at -0.165402 mm, distance = 25.26 um
17-03-17 18:37:13.738 -07 000000429 INF: FPGA: Xmit ZDACW 30613\n [Z Motor]
17-03-17 18:37:13.738 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:13.738 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:37:13.738 -07 000000476 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 18:37:13.738 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:37:13.748 -07 000000429 INF: FPGA: 'ZDACW 30613' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:13.748 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:13.748 -07 000000415 INF: FPGA: Recv ZDACR 30613
17-03-17 18:37:13.758 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:13.758 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:13.758 -07 000000429 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:37:13.758 -07 000000431 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:37:13.768 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:13.768 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:13.768 -07 000000476 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:13.768 -07 000000476 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:37:13.768 -07 000000476 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:37:13.778 -07 000000476 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:37:13.968 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:13.968 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 18:37:15.398 -07 000000424 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 18:37:15.398 -07 000000476 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1635 ms overall
17-03-17 18:37:15.398 -07 000000476 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:37:15.398 -07 000000476 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:37:15.398 -07 000000476 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1635 ms, distance = 14.919 mm, average velocity = 9.125 mm/sec
17-03-17 18:37:16.608 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:16.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:18.248 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:18.248 -07 000000501 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:37:18.258 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:18.258 -07 000000476 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:18.278 -07 000000476 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:18.288 -07 000000476 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:37:18.288 -07 000000476 INF: Y Motor: Moved to 59.9116 after 4549 ms
17-03-17 18:37:18.288 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140137 mm (DAC = 30613)
17-03-17 18:37:18.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.288 -07 000000593 INF: FPGA: Recv ZSGSRD 31110
17-03-17 18:37:18.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:18.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.298 -07 000000501 INF: FPGA: Recv ZSGSRD 31097
17-03-17 18:37:18.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.308 -07 000000431 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:37:18.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.318 -07 000000424 INF: FPGA: Recv ZSGSRD 31105
17-03-17 18:37:18.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.328 -07 000000448 INF: FPGA: Recv ZSGSRD 31108
17-03-17 18:37:18.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.338 -07 000000429 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:37:18.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.348 -07 000000476 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:37:18.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.358 -07 000000415 INF: FPGA: Recv ZSGSRD 31111
17-03-17 18:37:18.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.368 -07 000000480 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:37:18.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:18.378 -07 000000462 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:37:18.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.388 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:18.388 -07 000000482 INF: FPGA: Recv ZPIEZORD 26642
17-03-17 18:37:18.398 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:18.398 -07 000000012 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -9.8 V.
17-03-17 18:37:18.398 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31105 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31104 (-139.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31097 (-139.3 uncal um), Max = 31111 (-139.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:37:18.398 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31105, posNoise = 6, negNoise = 8
17-03-17 18:37:18.398 -07 000000012 INF: Z Motor: After move to -0.140137, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:18.398 -07 000000012 INF: Z Motor: Settle wait time = 4553 ms, measure time = 109 ms (allowed 150 ms), total time = 4662 ms
17-03-17 18:37:18.398 -07 000000012 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:18.448 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 18:37:18.448 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:18.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:18.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:18.448 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:18.448 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:18.448 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:18.448 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:18.448 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:37:18.448 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:37:18.478 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:37:18.478 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:18.478 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:18.478 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:18.488 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:37:18.488 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms.
17-03-17 18:37:18.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:18.528 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.004458,
17-03-17 18:37:18.548 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:18.738 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:18.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:18.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:18.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:37:18.778 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:18.778 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:18.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 287 ms overall
17-03-17 18:37:18.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:37:18.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:18.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:18.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:37:18.878 -07 000000415 INF: Image SNR check: start
17-03-17 18:37:18.898 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:18.898 -07 000000415 INF: Image SNR check: pass  [peak (Max-Min)=71.98]
17-03-17 18:37:18.898 -07 000000415 INF: Autofocus start
17-03-17 18:37:18.898 -07 000000415 INF: MeasureProfile start
17-03-17 18:37:18.898 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:18.908 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:37:18.908 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:18.908 -07 000000415 INF: MeasureProfile done
17-03-17 18:37:18.908 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:37:18.908 -07 000000415 INF: Autofocus finished
17-03-17 18:37:19.108 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:19.108 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:19.108 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.14014847068061. ----------
17-03-17 18:37:19.108 -07 000000610 INF: Cycle	15	Tile	1	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:19.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29121, sync = True, waitForSettling = True)
17-03-17 18:37:19.118 -07 000000610 INF: Z Motor: Moving to -0.133307 mm, started at -0.140148 mm, distance = 6.84 um
17-03-17 18:37:19.118 -07 000000610 INF: FPGA: Xmit ZDACW 29121\n [Z Motor]
17-03-17 18:37:19.118 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:37:19.128 -07 000000610 INF: FPGA: 'ZDACW 29121' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:19.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:19.128 -07 000000618 INF: FPGA: Recv ZDACR 29121
17-03-17 18:37:19.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:19.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.288 -07 000000424 INF: FPGA: Recv ZSGSRD 30039
17-03-17 18:37:19.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.298 -07 000000415 INF: FPGA: Recv ZSGSRD 30033
17-03-17 18:37:19.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.308 -07 000000623 INF: FPGA: Recv ZSGSRD 30042
17-03-17 18:37:19.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.318 -07 000000462 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:37:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.328 -07 000000012 INF: FPGA: Recv ZSGSRD 30048
17-03-17 18:37:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.338 -07 000000424 INF: FPGA: Recv ZSGSRD 30039
17-03-17 18:37:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.348 -07 000000415 INF: FPGA: Recv ZSGSRD 30045
17-03-17 18:37:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.358 -07 000000512 INF: FPGA: Recv ZSGSRD 30045
17-03-17 18:37:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.368 -07 000000482 INF: FPGA: Recv ZSGSRD 30043
17-03-17 18:37:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:19.378 -07 000000623 INF: FPGA: Recv ZSGSRD 30038
17-03-17 18:37:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:19.388 -07 000000448 INF: FPGA: Recv ZPIEZORD 25515
17-03-17 18:37:19.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:19.398 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.9 V.
17-03-17 18:37:19.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30041 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30042 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30033 (-132.5 uncal um), Max = 30048 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:37:19.398 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30041, posNoise = 7, negNoise = 8
17-03-17 18:37:19.398 -07 000000610 INF: Z Motor: After move to -0.133307, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:19.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:37:19.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:19.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:19.408 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:19.408 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:19.408 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:19.408 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:19.408 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:19.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:19.408 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:19.408 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:37:19.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:19.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:19.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:19.408 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:19.428 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:37:19.428 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:37:19.428 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:37:19.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:19.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:19.438 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:19.448 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:37:19.448 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 18:37:19.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29297 150\n [Camera]
17-03-17 18:37:19.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:20.048 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:20.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:20.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:20.048 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:20.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:20.048 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:20.048 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:20.048 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:37:20.048 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:20.048 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:37:20.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29297 779
17-03-17 18:37:20.388 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:20.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:37:20.428 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:37:20.428 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:20.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:37:20.428 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:37:20.428 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:20.428 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:20.438 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:37:20.438 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:37:20.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:37:20.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:20.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:20.578 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:20.578 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:20.578 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 18:37:20.578 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:20.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:20.578 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:20.708 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:20.708 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:37:20.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:37:20.768 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:20.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29297 150' command took 2 ms to send, 1314 ms to get response, and 1317 ms overall
17-03-17 18:37:20.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:20.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133313108961776. ------
17-03-17 18:37:20.768 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:20.768 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13974 mm
17-03-17 18:37:20.768 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:20.778 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:20.778 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:37:20.778 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:37:20.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:20.778 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30525, sync = True, waitForSettling = False)
17-03-17 18:37:20.778 -07 000000482 INF: Z Motor: Moving to -0.139734 mm, started at -0.133313 mm, distance = -6.42 um
17-03-17 18:37:20.778 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:37:20.778 -07 000000448 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:37:20.788 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:20.788 -07 000000424 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:20.788 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:20.788 -07 000000424 INF: Y Motor: Moving 1330 steps2
17-03-17 18:37:20.788 -07 000000482 INF: FPGA: Xmit ZDACW 30525\n [Z Motor]
17-03-17 18:37:20.788 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:37:20.798 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:20.798 -07 000000482 INF: FPGA: 'ZDACW 30525' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:37:20.808 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:20.818 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:20.818 -07 000000501 INF: FPGA: Recv ZDACR 30525
17-03-17 18:37:20.828 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:20.828 -07 000000482 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:37:20.968 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:37:20.968 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:37:20.968 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:20.968 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:37:20.968 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:37:20.998 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:20.998 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 18:37:21.088 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:37:21.088 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:37:21.088 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:21.088 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:37:21.098 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 18:37:21.178 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:37:21.178 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:37:21.208 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:21.208 -07 000000512 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:37:21.218 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:21.218 -07 000000424 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:21.218 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:37:21.218 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:37:21.608 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:21.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:22.168 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:22.168 -07 000000512 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:37:22.178 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:22.178 -07 000000424 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:22.198 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:22.198 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:22.198 -07 000000424 INF: Y Motor: Moved to 60.7334 after 1418 ms (table move)
17-03-17 18:37:22.198 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139734 mm (DAC = 30525)
17-03-17 18:37:22.198 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.198 -07 000000501 INF: FPGA: Recv ZSGSRD 31039
17-03-17 18:37:22.208 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:22.208 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.208 -07 000000512 INF: FPGA: Recv ZSGSRD 31031
17-03-17 18:37:22.218 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.218 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.218 -07 000000415 INF: FPGA: Recv ZSGSRD 31040
17-03-17 18:37:22.228 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.228 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.228 -07 000000482 INF: FPGA: Recv ZSGSRD 31043
17-03-17 18:37:22.238 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.238 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.238 -07 000000480 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:37:22.248 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.248 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.248 -07 000000478 INF: FPGA: Recv ZSGSRD 31046
17-03-17 18:37:22.258 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.258 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.258 -07 000000431 INF: FPGA: Recv ZSGSRD 31043
17-03-17 18:37:22.268 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.268 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.268 -07 000000012 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:37:22.278 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.278 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.278 -07 000000415 INF: FPGA: Recv ZSGSRD 31036
17-03-17 18:37:22.288 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.288 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:22.288 -07 000000501 INF: FPGA: Recv ZSGSRD 31035
17-03-17 18:37:22.298 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.298 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:22.298 -07 000000424 INF: FPGA: Recv ZPIEZORD 26814
17-03-17 18:37:22.308 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.308 -07 000000438 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.658 V. Piezo Error = -9.3 V.
17-03-17 18:37:22.308 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31040 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31041 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31031 (-138.9 uncal um), Max = 31046 (-139.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:37:22.308 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31040, posNoise = 6, negNoise = 9
17-03-17 18:37:22.308 -07 000000438 INF: Z Motor: After move to -0.139734, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:22.308 -07 000000438 INF: Z Motor: Settle wait time = 1421 ms, measure time = 106 ms (allowed 150 ms), total time = 1527 ms
17-03-17 18:37:22.308 -07 000000438 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:22.358 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 18:37:22.358 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:22.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:22.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:22.358 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:22.358 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:22.358 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:22.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:22.368 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:22.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:22.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:22.368 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:22.378 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:37:22.378 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:37:22.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:22.428 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:22.628 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:22.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:22.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:22.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:37:22.668 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:22.668 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:22.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 274 ms to get response, and 286 ms overall
17-03-17 18:37:22.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:37:22.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:22.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:22.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:37:22.768 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:22.768 -07 000000448 INF: Autofocus start
17-03-17 18:37:22.768 -07 000000448 INF: MeasureProfile start
17-03-17 18:37:22.768 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:22.778 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:22.778 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:22.778 -07 000000448 INF: MeasureProfile done
17-03-17 18:37:22.778 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:37:22.778 -07 000000448 INF: Autofocus finished
17-03-17 18:37:22.978 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:22.978 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:22.978 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139730896891395. ----------
17-03-17 18:37:22.978 -07 000000610 INF: Cycle	15	Tile	2	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:22.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29049, sync = True, waitForSettling = True)
17-03-17 18:37:22.988 -07 000000610 INF: Z Motor: Moving to -0.132978 mm, started at -0.139731 mm, distance = 6.75 um
17-03-17 18:37:22.988 -07 000000610 INF: FPGA: Xmit ZDACW 29049\n [Z Motor]
17-03-17 18:37:22.988 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:37:22.998 -07 000000610 INF: FPGA: 'ZDACW 29049' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:22.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:22.998 -07 000000478 INF: FPGA: Recv ZDACR 29049
17-03-17 18:37:23.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.158 -07 000000429 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:37:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.168 -07 000000593 INF: FPGA: Recv ZSGSRD 29990
17-03-17 18:37:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29987
17-03-17 18:37:23.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.188 -07 000000431 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:37:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.198 -07 000000424 INF: FPGA: Recv ZSGSRD 29991
17-03-17 18:37:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.208 -07 000000608 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:37:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.218 -07 000000482 INF: FPGA: Recv ZSGSRD 29985
17-03-17 18:37:23.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.228 -07 000000512 INF: FPGA: Recv ZSGSRD 29991
17-03-17 18:37:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.238 -07 000000618 INF: FPGA: Recv ZSGSRD 29990
17-03-17 18:37:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:23.248 -07 000000415 INF: FPGA: Recv ZSGSRD 29987
17-03-17 18:37:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:23.258 -07 000000608 INF: FPGA: Recv ZPIEZORD 25491
17-03-17 18:37:23.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:23.268 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.9 V.
17-03-17 18:37:23.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29990 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29990 (-132.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29985 (-132.2 uncal um), Max = 29996 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:37:23.268 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29990, posNoise = 6, negNoise = 5
17-03-17 18:37:23.268 -07 000000610 INF: Z Motor: After move to -0.132978, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:23.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:37:23.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:23.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:23.268 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:23.268 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:23.268 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:23.268 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:23.268 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:23.268 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:23.268 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:23.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:23.268 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:23.268 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:23.278 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:37:23.278 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:23.278 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:23.278 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:23.288 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:37:23.288 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:37:23.288 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:37:23.288 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:37:23.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29226 150\n [Camera]
17-03-17 18:37:23.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:23.888 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:23.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:23.888 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:23.888 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:23.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:37:23.888 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:23.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:23.898 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:23.898 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:23.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1057820720, 0x0, 418435064) start.
17-03-17 18:37:23.918 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.993549,
17-03-17 18:37:24.078 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29226 779
17-03-17 18:37:24.228 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:24.268 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:37:24.268 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:37:24.268 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:24.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1057820720, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:37:24.268 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:37:24.268 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:24.278 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:24.278 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:37:24.278 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:24.288 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:37:24.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:37:24.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:37:24.428 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:24.428 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:24.428 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1093242984, 0x0, 391868352) start.
17-03-17 18:37:24.428 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:37:24.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:37:24.428 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:24.428 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:24.428 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1128665248, 0x0, 418435064) start.
17-03-17 18:37:24.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:37:24.618 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:24.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29226 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-17 18:37:24.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:24.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.132985474142546. ------
17-03-17 18:37:24.618 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:24.618 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13968 mm
17-03-17 18:37:24.618 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:24.618 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:37:24.618 -07 000000462 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:37:24.618 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30514, sync = True, waitForSettling = False)
17-03-17 18:37:24.618 -07 000000480 INF: Z Motor: Moving to -0.139684 mm, started at -0.132985 mm, distance = -6.70 um
17-03-17 18:37:24.628 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:24.628 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:24.628 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:24.628 -07 000000618 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:37:24.638 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:37:24.638 -07 000000480 INF: FPGA: Xmit ZDACW 30514\n [Z Motor]
17-03-17 18:37:24.638 -07 000000462 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:24.638 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:37:24.638 -07 000000462 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:24.638 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:37:24.648 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:24.648 -07 000000480 INF: FPGA: 'ZDACW 30514' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:37:24.658 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:24.668 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:24.668 -07 000000593 INF: FPGA: Recv ZDACR 30514
17-03-17 18:37:24.678 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:24.678 -07 000000480 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:37:24.818 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1128665248, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:37:24.818 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:37:24.818 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:24.818 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:24.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1093242984, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:37:24.828 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:37:24.828 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:24.828 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:37:24.838 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:37:24.838 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:37:24.848 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:24.848 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:37:25.028 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:37:25.028 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:37:25.068 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:25.068 -07 000000415 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:37:25.078 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:25.078 -07 000000462 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:25.078 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:37:25.078 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-17 18:37:26.028 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:26.028 -07 000000623 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:37:26.038 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.038 -07 000000462 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:26.058 -07 000000462 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:26.058 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:26.058 -07 000000462 INF: Y Motor: Moved to 61.5645 after 1440 ms (table move)
17-03-17 18:37:26.068 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139684 mm (DAC = 30514)
17-03-17 18:37:26.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.068 -07 000000429 INF: FPGA: Recv ZSGSRD 31040
17-03-17 18:37:26.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 3 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:26.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.078 -07 000000448 INF: FPGA: Recv ZSGSRD 31027
17-03-17 18:37:26.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.088 -07 000000415 INF: FPGA: Recv ZSGSRD 31037
17-03-17 18:37:26.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.098 -07 000000480 INF: FPGA: Recv ZSGSRD 31040
17-03-17 18:37:26.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.108 -07 000000512 INF: FPGA: Recv ZSGSRD 31036
17-03-17 18:37:26.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.118 -07 000000608 INF: FPGA: Recv ZSGSRD 31031
17-03-17 18:37:26.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.128 -07 000000478 INF: FPGA: Recv ZSGSRD 31031
17-03-17 18:37:26.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.138 -07 000000448 INF: FPGA: Recv ZSGSRD 31037
17-03-17 18:37:26.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.148 -07 000000618 INF: FPGA: Recv ZSGSRD 31029
17-03-17 18:37:26.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:26.158 -07 000000415 INF: FPGA: Recv ZSGSRD 31037
17-03-17 18:37:26.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.168 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:26.168 -07 000000438 INF: FPGA: Recv ZPIEZORD 26863
17-03-17 18:37:26.178 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.178 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.656 V. Piezo Error = -9.2 V.
17-03-17 18:37:26.178 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31034 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31036 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31027 (-138.8 uncal um), Max = 31040 (-138.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:37:26.178 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31034, posNoise = 6, negNoise = 7
17-03-17 18:37:26.178 -07 000000431 INF: Z Motor: After move to -0.139684, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:26.178 -07 000000431 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:37:26.178 -07 000000431 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:26.228 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 18:37:26.228 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:26.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:26.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:26.228 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:26.228 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:26.228 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:26.228 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:26.238 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:26.238 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:26.238 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:26.238 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:26.248 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:37:26.248 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:37:26.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:26.288 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:26.488 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:26.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:26.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:26.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-17 18:37:26.528 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:26.528 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:26.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:37:26.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:37:26.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:26.608 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:26.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:37:26.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:37:26.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:26.628 -07 000000501 INF: Autofocus start
17-03-17 18:37:26.628 -07 000000501 INF: MeasureProfile start
17-03-17 18:37:26.628 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:26.628 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:26.638 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:26.638 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:26.638 -07 000000501 INF: MeasureProfile done
17-03-17 18:37:26.638 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:37:26.638 -07 000000501 INF: Autofocus finished
17-03-17 18:37:26.838 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:26.838 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:26.838 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139692351618545. ----------
17-03-17 18:37:26.848 -07 000000610 INF: Cycle	15	Tile	3	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:26.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29038, sync = True, waitForSettling = True)
17-03-17 18:37:26.848 -07 000000610 INF: Z Motor: Moving to -0.132927 mm, started at -0.139692 mm, distance = 6.76 um
17-03-17 18:37:26.848 -07 000000610 INF: FPGA: Xmit ZDACW 29038\n [Z Motor]
17-03-17 18:37:26.848 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:37:26.858 -07 000000610 INF: FPGA: 'ZDACW 29038' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:26.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:26.858 -07 000000462 INF: FPGA: Recv ZDACR 29038
17-03-17 18:37:26.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:26.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:27.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.018 -07 000000448 INF: FPGA: Recv ZSGSRD 29982
17-03-17 18:37:27.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:27.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.028 -07 000000482 INF: FPGA: Recv ZSGSRD 29989
17-03-17 18:37:27.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.038 -07 000000608 INF: FPGA: Recv ZSGSRD 29985
17-03-17 18:37:27.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.048 -07 000000415 INF: FPGA: Recv ZSGSRD 29974
17-03-17 18:37:27.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.058 -07 000000480 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:37:27.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.068 -07 000000448 INF: FPGA: Recv ZSGSRD 29980
17-03-17 18:37:27.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.078 -07 000000431 INF: FPGA: Recv ZSGSRD 29988
17-03-17 18:37:27.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.088 -07 000000012 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:37:27.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.098 -07 000000501 INF: FPGA: Recv ZSGSRD 29979
17-03-17 18:37:27.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:27.108 -07 000000480 INF: FPGA: Recv ZSGSRD 29985
17-03-17 18:37:27.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:27.118 -07 000000593 INF: FPGA: Recv ZPIEZORD 25482
17-03-17 18:37:27.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:27.128 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.9 V.
17-03-17 18:37:27.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29983 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29984 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29974 (-132.1 uncal um), Max = 29989 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:37:27.128 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29983, posNoise = 6, negNoise = 9
17-03-17 18:37:27.128 -07 000000610 INF: Z Motor: After move to -0.132927, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:27.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:37:27.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:27.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:27.128 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:27.128 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:27.128 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:27.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:27.128 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:27.128 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:27.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:37:27.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:27.128 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:27.128 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:27.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:27.138 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:27.138 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:27.138 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:27.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:37:27.148 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:37:27.148 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:37:27.148 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:37:27.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29215 150\n [Camera]
17-03-17 18:37:27.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:27.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:27.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:27.748 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:27.748 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:27.748 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:37:27.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:27.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:27.748 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:27.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:27.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:37:27.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29215 779
17-03-17 18:37:28.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:28.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:37:28.138 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:37:28.138 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:28.138 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:28.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:37:28.148 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:37:28.148 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:28.148 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:28.148 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:37:28.148 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:37:28.278 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:28.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:28.278 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:28.278 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:28.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:37:28.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:28.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:28.278 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:28.278 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:28.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:37:28.468 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:37:28.468 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:28.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29215 150' command took 2 ms to send, 1307 ms to get response, and 1318 ms overall
17-03-17 18:37:28.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:28.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132940504657554. ------
17-03-17 18:37:28.478 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:28.478 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13945 mm
17-03-17 18:37:28.478 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:28.478 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:28.478 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:37:28.478 -07 000000478 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:37:28.478 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30463, sync = True, waitForSettling = False)
17-03-17 18:37:28.478 -07 000000438 INF: Z Motor: Moving to -0.139451 mm, started at -0.132941 mm, distance = -6.51 um
17-03-17 18:37:28.488 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:28.488 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:28.488 -07 000000480 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:37:28.498 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:37:28.498 -07 000000478 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:28.498 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:28.498 -07 000000478 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:28.498 -07 000000478 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:37:28.508 -07 000000438 INF: FPGA: Xmit ZDACW 30463\n [Z Motor]
17-03-17 18:37:28.508 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:37:28.518 -07 000000438 INF: FPGA: 'ZDACW 30463' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:37:28.518 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:28.528 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:28.528 -07 000000608 INF: FPGA: Recv ZDACR 30463
17-03-17 18:37:28.538 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:37:28.538 -07 000000438 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:37:28.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:37:28.668 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:37:28.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:28.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:37:28.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:37:28.668 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:28.668 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:28.678 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:37:28.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:37:28.678 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:37:28.698 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:28.698 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:37:28.888 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:37:28.888 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:37:28.928 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:28.928 -07 000000012 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:37:28.938 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:28.938 -07 000000478 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:28.938 -07 000000478 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:37:28.938 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:37:29.278 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.014009,
17-03-17 18:37:29.888 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:29.888 -07 000000424 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:37:29.898 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:29.898 -07 000000478 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:29.918 -07 000000478 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:29.918 -07 000000478 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:29.918 -07 000000478 INF: Y Motor: Moved to 62.3960 after 1435 ms (table move)
17-03-17 18:37:29.918 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139451 mm (DAC = 30463)
17-03-17 18:37:29.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.928 -07 000000618 INF: FPGA: Recv ZSGSRD 30996
17-03-17 18:37:29.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:37:29.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.928 -07 000000415 INF: FPGA: Recv ZSGSRD 30998
17-03-17 18:37:29.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:29.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30999
17-03-17 18:37:29.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:29.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.948 -07 000000431 INF: FPGA: Recv ZSGSRD 31005
17-03-17 18:37:29.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:29.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.958 -07 000000593 INF: FPGA: Recv ZSGSRD 31004
17-03-17 18:37:29.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:29.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.968 -07 000000478 INF: FPGA: Recv ZSGSRD 30995
17-03-17 18:37:29.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:29.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.978 -07 000000480 INF: FPGA: Recv ZSGSRD 30993
17-03-17 18:37:29.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:29.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.988 -07 000000512 INF: FPGA: Recv ZSGSRD 30991
17-03-17 18:37:29.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:29.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:29.998 -07 000000462 INF: FPGA: Recv ZSGSRD 30992
17-03-17 18:37:30.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:30.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:30.008 -07 000000608 INF: FPGA: Recv ZSGSRD 31002
17-03-17 18:37:30.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:30.018 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:30.018 -07 000000480 INF: FPGA: Recv ZPIEZORD 26847
17-03-17 18:37:30.028 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:30.028 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.648 V. Piezo Error = -9.1 V.
17-03-17 18:37:30.028 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 30998 (-138.7 uncal um), Error = 0.8 uncal um, Median = 30997 (-138.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30991 (-138.6 uncal um), Max = 31005 (-138.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:37:30.028 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30998, posNoise = 7, negNoise = 7
17-03-17 18:37:30.028 -07 000000429 INF: Z Motor: After move to -0.139451, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:30.028 -07 000000429 INF: Z Motor: Settle wait time = 1439 ms, measure time = 103 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:37:30.028 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:30.078 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:37:30.078 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:30.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:30.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:30.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:30.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:30.078 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:30.078 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:30.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:30.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:30.088 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:30.088 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:30.088 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:37:30.088 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:37:30.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:30.138 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:30.338 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:30.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:30.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:30.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405381560, 0x0, 559484976) start.
17-03-17 18:37:30.378 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:30.378 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:30.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:37:30.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405381560, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:37:30.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:30.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:37:30.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:37:30.578 -07 000000512 INF: Autofocus start
17-03-17 18:37:30.578 -07 000000512 INF: MeasureProfile start
17-03-17 18:37:30.578 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:30.578 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:30.588 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:30.588 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:30.588 -07 000000512 INF: MeasureProfile done
17-03-17 18:37:30.588 -07 000000512 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:37:30.588 -07 000000512 INF: Autofocus finished
17-03-17 18:37:30.788 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:30.788 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 18:37:30.788 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139461079981441. ----------
17-03-17 18:37:30.798 -07 000000610 INF: Cycle	15	Tile	4	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:30.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28941, sync = True, waitForSettling = True)
17-03-17 18:37:30.798 -07 000000610 INF: Z Motor: Moving to -0.132483 mm, started at -0.139461 mm, distance = 6.98 um
17-03-17 18:37:30.798 -07 000000610 INF: FPGA: Xmit ZDACW 28941\n [Z Motor]
17-03-17 18:37:30.798 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:37:30.808 -07 000000610 INF: FPGA: 'ZDACW 28941' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:30.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:30.808 -07 000000480 INF: FPGA: Recv ZDACR 28941
17-03-17 18:37:30.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:30.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:30.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:30.968 -07 000000424 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:37:30.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:30.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:30.978 -07 000000462 INF: FPGA: Recv ZSGSRD 29915
17-03-17 18:37:30.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:30.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:30.988 -07 000000431 INF: FPGA: Recv ZSGSRD 29910
17-03-17 18:37:30.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:30.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:30.998 -07 000000623 INF: FPGA: Recv ZSGSRD 29916
17-03-17 18:37:31.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:31.008 -07 000000012 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:37:31.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:31.018 -07 000000512 INF: FPGA: Recv ZSGSRD 29907
17-03-17 18:37:31.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:31.028 -07 000000462 INF: FPGA: Recv ZSGSRD 29921
17-03-17 18:37:31.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:31.038 -07 000000501 INF: FPGA: Recv ZSGSRD 29911
17-03-17 18:37:31.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:31.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29912
17-03-17 18:37:31.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:31.058 -07 000000476 INF: FPGA: Recv ZSGSRD 29911
17-03-17 18:37:31.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:31.068 -07 000000480 INF: FPGA: Recv ZPIEZORD 25442
17-03-17 18:37:31.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:31.078 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.8 V.
17-03-17 18:37:31.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29913 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29913 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29907 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:37:31.078 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29913, posNoise = 8, negNoise = 6
17-03-17 18:37:31.078 -07 000000610 INF: Z Motor: After move to -0.132483, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:31.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:37:31.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:31.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:31.078 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:31.078 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:31.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:31.078 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:31.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:31.078 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:31.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:37:31.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:31.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:31.078 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:31.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:37:31.078 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:31.078 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:31.078 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:31.088 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:37:31.088 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:37:31.088 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:37:31.088 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:37:31.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29118 150\n [Camera]
17-03-17 18:37:31.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:31.608 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:31.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:31.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:31.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:31.698 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:31.698 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:31.698 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:37:31.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:31.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:31.698 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:31.698 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:31.698 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:37:31.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29118 779
17-03-17 18:37:32.038 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:32.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:37:32.078 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:37:32.078 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:32.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:37:32.078 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:37:32.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:32.078 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:32.078 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:37:32.078 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:32.088 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:37:32.228 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:37:32.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:37:32.228 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:32.228 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:32.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:37:32.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:37:32.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:37:32.228 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:32.228 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:32.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:37:32.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:37:32.418 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:32.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29118 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:37:32.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:32.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132490809807631. ------
17-03-17 18:37:32.558 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:32.558 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13913 mm
17-03-17 18:37:32.558 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:32.558 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:32.558 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:37:32.558 -07 000000429 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:37:32.558 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30392, sync = True, waitForSettling = False)
17-03-17 18:37:32.558 -07 000000462 INF: Z Motor: Moving to -0.139126 mm, started at -0.132491 mm, distance = -6.63 um
17-03-17 18:37:32.568 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:32.568 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:32.568 -07 000000480 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:37:32.578 -07 000000462 INF: FPGA: Xmit ZDACW 30392\n [Z Motor]
17-03-17 18:37:32.578 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:37:32.578 -07 000000429 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:32.578 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:37:32.578 -07 000000429 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:32.578 -07 000000429 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:37:32.588 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:32.588 -07 000000462 INF: FPGA: 'ZDACW 30392' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:37:32.598 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:32.608 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:32.608 -07 000000415 INF: FPGA: Recv ZDACR 30392
17-03-17 18:37:32.618 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:32.618 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:37:32.638 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 408 ms.
17-03-17 18:37:32.638 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:37:32.638 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:32.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 409 ms.
17-03-17 18:37:32.638 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:37:32.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:32.648 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:32.648 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:37:32.648 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 18:37:32.648 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:37:32.788 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:32.788 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:37:32.968 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:37:32.968 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:37:33.008 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:33.008 -07 000000482 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:37:33.018 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:33.018 -07 000000429 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:33.018 -07 000000429 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:37:33.018 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.123 mm/sec
17-03-17 18:37:33.968 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:33.968 -07 000000431 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:37:33.978 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:33.978 -07 000000429 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:33.998 -07 000000429 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:33.998 -07 000000429 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:33.998 -07 000000429 INF: Y Motor: Moved to 63.2251 after 1437 ms (table move)
17-03-17 18:37:33.998 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139126 mm (DAC = 30392)
17-03-17 18:37:33.998 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:33.998 -07 000000415 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:37:34.008 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:34.008 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.008 -07 000000476 INF: FPGA: Recv ZSGSRD 30941
17-03-17 18:37:34.018 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.018 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30950
17-03-17 18:37:34.028 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.028 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.028 -07 000000608 INF: FPGA: Recv ZSGSRD 30943
17-03-17 18:37:34.038 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.038 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30954
17-03-17 18:37:34.048 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.048 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.048 -07 000000476 INF: FPGA: Recv ZSGSRD 30954
17-03-17 18:37:34.058 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.058 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.058 -07 000000462 INF: FPGA: Recv ZSGSRD 30941
17-03-17 18:37:34.068 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.068 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.068 -07 000000431 INF: FPGA: Recv ZSGSRD 30947
17-03-17 18:37:34.078 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30939
17-03-17 18:37:34.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:34.088 -07 000000512 INF: FPGA: Recv ZSGSRD 30943
17-03-17 18:37:34.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.098 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:34.098 -07 000000424 INF: FPGA: Recv ZPIEZORD 26827
17-03-17 18:37:34.108 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.108 -07 000000501 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -9.1 V.
17-03-17 18:37:34.108 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30946 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30945 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30939 (-138.3 uncal um), Max = 30954 (-138.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:37:34.108 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30946, posNoise = 8, negNoise = 7
17-03-17 18:37:34.108 -07 000000501 INF: Z Motor: After move to -0.139126, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:34.108 -07 000000501 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:37:34.108 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:34.158 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:37:34.158 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:34.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:34.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:34.158 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:34.158 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:34.158 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:34.158 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:34.158 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:34.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:34.168 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:34.168 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:34.168 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:37:34.168 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:37:34.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:34.218 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:34.418 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:34.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:34.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:34.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:37:34.458 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:34.458 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:34.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:37:34.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:37:34.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:34.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:34.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:37:34.648 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.989471,
17-03-17 18:37:34.658 -07 000000618 INF: Autofocus start
17-03-17 18:37:34.658 -07 000000618 INF: MeasureProfile start
17-03-17 18:37:34.668 -07 000000618 INF: MeasureProfile done
17-03-17 18:37:34.668 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:37:34.668 -07 000000618 INF: Autofocus finished
17-03-17 18:37:34.678 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:34.678 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:34.688 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:37:34.688 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:34.888 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:34.888 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:34.888 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.13912702095007. ----------
17-03-17 18:37:34.888 -07 000000610 INF: Cycle	15	Tile	5	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:34.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28917, sync = True, waitForSettling = True)
17-03-17 18:37:34.898 -07 000000610 INF: Z Motor: Moving to -0.132374 mm, started at -0.139127 mm, distance = 6.75 um
17-03-17 18:37:34.898 -07 000000610 INF: FPGA: Xmit ZDACW 28917\n [Z Motor]
17-03-17 18:37:34.898 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:37:34.908 -07 000000610 INF: FPGA: 'ZDACW 28917' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:34.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:34.908 -07 000000438 INF: FPGA: Recv ZDACR 28917
17-03-17 18:37:34.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:34.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:35.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.068 -07 000000462 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:37:35.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:35.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.078 -07 000000618 INF: FPGA: Recv ZSGSRD 29897
17-03-17 18:37:35.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.088 -07 000000482 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:37:35.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.098 -07 000000431 INF: FPGA: Recv ZSGSRD 29892
17-03-17 18:37:35.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.108 -07 000000424 INF: FPGA: Recv ZSGSRD 29899
17-03-17 18:37:35.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.118 -07 000000593 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:37:35.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29897
17-03-17 18:37:35.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.138 -07 000000482 INF: FPGA: Recv ZSGSRD 29897
17-03-17 18:37:35.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.148 -07 000000438 INF: FPGA: Recv ZSGSRD 29899
17-03-17 18:37:35.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:35.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:37:35.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:35.168 -07 000000415 INF: FPGA: Recv ZPIEZORD 25432
17-03-17 18:37:35.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:35.178 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.8 V.
17-03-17 18:37:35.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29896 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29892 (-131.6 uncal um), Max = 29899 (-131.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:37:35.178 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29896, posNoise = 3, negNoise = 4
17-03-17 18:37:35.178 -07 000000610 INF: Z Motor: After move to -0.132374, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:35.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:37:35.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:35.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:35.178 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:35.178 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:35.178 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:35.178 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:35.178 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:35.178 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:35.178 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:37:35.178 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:35.178 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:35.178 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:35.188 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:35.188 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:35.188 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:35.188 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:35.188 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:37:35.188 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:37:35.198 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:37:35.198 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:37:35.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29093 150\n [Camera]
17-03-17 18:37:35.398 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:35.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:35.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:35.798 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:35.798 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:35.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:35.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:35.808 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:35.808 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:37:35.808 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:35.808 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:37:35.988 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29093 779
17-03-17 18:37:36.138 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:36.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:37:36.178 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:37:36.178 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:36.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:37:36.188 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:37:36.188 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:36.188 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:37:36.188 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:37:36.188 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:37:36.198 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:37:36.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:37:36.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:37:36.328 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:36.328 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:37:36.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:37:36.328 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:36.328 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:36.328 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:37:36.458 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:36.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:37:36.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:37:36.518 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:36.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29093 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-17 18:37:36.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:36.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132381598201221. ------
17-03-17 18:37:36.528 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:36.528 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13889 mm
17-03-17 18:37:36.528 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:36.538 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:36.538 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:37:36.538 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:36.538 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30340, sync = True, waitForSettling = False)
17-03-17 18:37:36.538 -07 000000623 INF: Z Motor: Moving to -0.138888 mm, started at -0.132382 mm, distance = -6.51 um
17-03-17 18:37:36.538 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:37:36.538 -07 000000482 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:37:36.548 -07 000000623 INF: FPGA: Xmit ZDACW 30340\n [Z Motor]
17-03-17 18:37:36.548 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:37:36.558 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:36.558 -07 000000623 INF: FPGA: 'ZDACW 30340' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:37:36.558 -07 000000593 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:37:36.568 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:37:36.568 -07 000000482 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:36.568 -07 000000482 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:36.568 -07 000000482 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:37:36.568 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:36.568 -07 000000448 INF: FPGA: Recv ZDACR 30340
17-03-17 18:37:36.578 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:37:36.578 -07 000000623 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:37:36.578 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:36.608 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:36.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:36.708 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:37:36.708 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:37:36.708 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:36.708 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:37:36.718 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:37:36.738 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:36.738 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:37:36.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:37:36.838 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:37:36.838 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:36.838 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:36.838 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 18:37:36.958 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:37:36.958 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 372 ms to get response, and 391 ms overall
17-03-17 18:37:36.988 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:36.988 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:37:36.998 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:36.998 -07 000000482 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:36.998 -07 000000482 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:37:36.998 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.142 mm/sec
17-03-17 18:37:37.948 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:37.948 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:37:37.958 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:37.958 -07 000000482 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:37.968 -07 000000482 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:37.968 -07 000000482 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:37.968 -07 000000482 INF: Y Motor: Moved to 64.0576 after 1431 ms (table move)
17-03-17 18:37:37.968 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138888 mm (DAC = 30340)
17-03-17 18:37:37.968 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:37.978 -07 000000618 INF: FPGA: Recv ZSGSRD 30911
17-03-17 18:37:37.978 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:37:37.978 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:37.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30919
17-03-17 18:37:37.988 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:37.988 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:37.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30909
17-03-17 18:37:37.998 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:37.998 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:37.998 -07 000000608 INF: FPGA: Recv ZSGSRD 30911
17-03-17 18:37:38.008 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.008 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.008 -07 000000431 INF: FPGA: Recv ZSGSRD 30907
17-03-17 18:37:38.018 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.018 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.018 -07 000000448 INF: FPGA: Recv ZSGSRD 30912
17-03-17 18:37:38.028 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.028 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.028 -07 000000593 INF: FPGA: Recv ZSGSRD 30914
17-03-17 18:37:38.038 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.038 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.038 -07 000000480 INF: FPGA: Recv ZSGSRD 30911
17-03-17 18:37:38.048 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.048 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.048 -07 000000424 INF: FPGA: Recv ZSGSRD 30912
17-03-17 18:37:38.058 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.058 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.058 -07 000000476 INF: FPGA: Recv ZSGSRD 30906
17-03-17 18:37:38.068 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.068 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:38.068 -07 000000593 INF: FPGA: Recv ZPIEZORD 26768
17-03-17 18:37:38.078 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.078 -07 000000512 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.1 V.
17-03-17 18:37:38.078 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30911 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30911 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30906 (-138.1 uncal um), Max = 30919 (-138.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:37:38.078 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30911, posNoise = 8, negNoise = 5
17-03-17 18:37:38.078 -07 000000512 INF: Z Motor: After move to -0.138888, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:38.078 -07 000000512 INF: Z Motor: Settle wait time = 1435 ms, measure time = 102 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:37:38.078 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:38.128 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:37:38.128 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:38.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:38.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:38.128 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:38.128 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:38.128 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:38.128 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:38.128 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:38.128 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:38.128 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:38.138 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:38.148 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:37:38.148 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:37:38.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:38.198 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:38.398 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:38.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:38.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:38.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-17 18:37:38.428 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:38.438 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:38.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:37:38.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 18:37:38.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:38.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:38.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:37:38.538 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:38.538 -07 000000618 INF: Autofocus start
17-03-17 18:37:38.538 -07 000000618 INF: MeasureProfile start
17-03-17 18:37:38.538 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:38.548 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:38.548 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:38.548 -07 000000618 INF: MeasureProfile done
17-03-17 18:37:38.548 -07 000000618 INF: X=9  Z correction [um]=0.01934518
17-03-17 18:37:38.548 -07 000000618 INF: Autofocus finished
17-03-17 18:37:38.748 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:38.748 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:38.748 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138902173525108. ----------
17-03-17 18:37:38.748 -07 000000610 INF: Cycle	15	Tile	6	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:38.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28857, sync = True, waitForSettling = True)
17-03-17 18:37:38.758 -07 000000610 INF: Z Motor: Moving to -0.132099 mm, started at -0.138902 mm, distance = 6.80 um
17-03-17 18:37:38.758 -07 000000610 INF: FPGA: Xmit ZDACW 28857\n [Z Motor]
17-03-17 18:37:38.758 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:37:38.768 -07 000000610 INF: FPGA: 'ZDACW 28857' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:38.768 -07 000000480 INF: FPGA: Recv ZDACR 28857
17-03-17 18:37:38.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:38.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.928 -07 000000431 INF: FPGA: Recv ZSGSRD 29855
17-03-17 18:37:38.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29853
17-03-17 18:37:38.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:38.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.948 -07 000000476 INF: FPGA: Recv ZSGSRD 29853
17-03-17 18:37:38.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.958 -07 000000424 INF: FPGA: Recv ZSGSRD 29853
17-03-17 18:37:38.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.968 -07 000000438 INF: FPGA: Recv ZSGSRD 29851
17-03-17 18:37:38.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.978 -07 000000012 INF: FPGA: Recv ZSGSRD 29855
17-03-17 18:37:38.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.988 -07 000000608 INF: FPGA: Recv ZSGSRD 29855
17-03-17 18:37:38.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:38.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:38.998 -07 000000512 INF: FPGA: Recv ZSGSRD 29848
17-03-17 18:37:39.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:39.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:39.008 -07 000000415 INF: FPGA: Recv ZSGSRD 29852
17-03-17 18:37:39.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:39.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:39.018 -07 000000438 INF: FPGA: Recv ZSGSRD 29852
17-03-17 18:37:39.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:39.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:39.028 -07 000000480 INF: FPGA: Recv ZPIEZORD 25383
17-03-17 18:37:39.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:39.038 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.8 V.
17-03-17 18:37:39.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29853 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29853 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29848 (-131.3 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:37:39.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29853, posNoise = 2, negNoise = 5
17-03-17 18:37:39.038 -07 000000610 INF: Z Motor: After move to -0.132099, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:39.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:37:39.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:39.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:39.038 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:39.038 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:39.038 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:39.038 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:39.038 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:39.038 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:39.038 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:37:39.038 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:39.038 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:39.038 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:39.048 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:39.048 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:39.048 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:37:39.048 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:39.058 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:37:39.058 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:37:39.058 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:37:39.058 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:37:39.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29034 150\n [Camera]
17-03-17 18:37:39.258 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:39.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:39.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:39.648 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:39.648 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:39.648 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:37:39.658 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:39.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:39.658 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:39.658 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:39.658 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 18:37:39.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29034 779
17-03-17 18:37:39.988 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:40.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:37:40.028 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:37:40.028 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:40.038 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.990831,
17-03-17 18:37:40.038 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:37:40.038 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:37:40.038 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:40.038 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:40.038 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:40.038 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:37:40.048 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:37:40.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:40.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:40.188 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:40.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:40.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:40.188 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:40.188 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:40.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1057820720, 0x0, 418435064) start.
17-03-17 18:37:40.188 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:40.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 18:37:40.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:37:40.378 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:40.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29034 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:37:40.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:40.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132105357079125. ------
17-03-17 18:37:40.378 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13857 mm
17-03-17 18:37:40.378 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:40.378 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:37:40.378 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:37:40.378 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30271, sync = True, waitForSettling = False)
17-03-17 18:37:40.378 -07 000000438 INF: Z Motor: Moving to -0.138572 mm, started at -0.132105 mm, distance = -6.47 um
17-03-17 18:37:40.388 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:40.388 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:40.398 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:37:40.398 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:40.398 -07 000000415 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:37:40.408 -07 000000512 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:37:40.408 -07 000000438 INF: FPGA: Xmit ZDACW 30271\n [Z Motor]
17-03-17 18:37:40.408 -07 000000512 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:40.408 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:37:40.408 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:40.408 -07 000000512 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:37:40.418 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:40.418 -07 000000438 INF: FPGA: 'ZDACW 30271' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:37:40.428 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:40.438 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:40.438 -07 000000431 INF: FPGA: Recv ZDACR 30271
17-03-17 18:37:40.448 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:40.448 -07 000000438 INF: Z Motor: MoveAbsStepped took 61 ms (did NOT wait for settling yet))
17-03-17 18:37:40.588 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1057820720, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:37:40.588 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:37:40.588 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:40.588 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:37:40.588 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:37:40.588 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:40.588 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:40.598 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:40.598 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:37:40.598 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:37:40.618 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:40.618 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:37:40.798 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:37:40.798 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:37:40.838 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:40.838 -07 000000429 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:37:40.848 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:40.848 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:40.848 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:37:40.848 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 18:37:41.608 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:41.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:41.798 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:41.798 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:37:41.808 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:41.808 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:41.828 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:41.828 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:41.828 -07 000000512 INF: Y Motor: Moved to 64.8794 after 1442 ms (table move)
17-03-17 18:37:41.828 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138572 mm (DAC = 30271)
17-03-17 18:37:41.828 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.828 -07 000000431 INF: FPGA: Recv ZSGSRD 30865
17-03-17 18:37:41.838 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:41.838 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30857
17-03-17 18:37:41.848 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.848 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.848 -07 000000623 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:37:41.858 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.858 -07 000000462 INF: FPGA: Recv ZSGSRD 30866
17-03-17 18:37:41.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.868 -07 000000424 INF: FPGA: Recv ZSGSRD 30866
17-03-17 18:37:41.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.878 -07 000000448 INF: FPGA: Recv ZSGSRD 30862
17-03-17 18:37:41.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30862
17-03-17 18:37:41.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.898 -07 000000415 INF: FPGA: Recv ZSGSRD 30863
17-03-17 18:37:41.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.908 -07 000000462 INF: FPGA: Recv ZSGSRD 30856
17-03-17 18:37:41.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:41.918 -07 000000431 INF: FPGA: Recv ZSGSRD 30856
17-03-17 18:37:41.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.928 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:41.928 -07 000000512 INF: FPGA: Recv ZPIEZORD 26739
17-03-17 18:37:41.938 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:41.938 -07 000000608 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.1 V.
17-03-17 18:37:41.938 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30861 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30856 (-137.7 uncal um), Max = 30866 (-137.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:37:41.938 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30861, posNoise = 5, negNoise = 5
17-03-17 18:37:41.938 -07 000000608 INF: Z Motor: After move to -0.138572, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:41.938 -07 000000608 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:37:41.938 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:41.988 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:37:41.988 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:41.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:41.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:41.988 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:41.988 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:41.988 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:41.988 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:41.988 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:37:41.988 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:41.998 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:41.998 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:42.008 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:37:42.008 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:37:42.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:42.048 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:42.248 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:42.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:42.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:42.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442002248, 0x0, 559484976) start.
17-03-17 18:37:42.288 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:42.288 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:42.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:37:42.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442002248, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:37:42.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:42.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:42.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:37:42.488 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:42.488 -07 000000512 INF: Autofocus start
17-03-17 18:37:42.488 -07 000000512 INF: MeasureProfile start
17-03-17 18:37:42.488 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:42.498 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:42.498 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:42.498 -07 000000512 INF: MeasureProfile done
17-03-17 18:37:42.498 -07 000000512 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:37:42.498 -07 000000512 INF: Autofocus finished
17-03-17 18:37:42.698 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:42.698 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:42.698 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.13858096291802. ----------
17-03-17 18:37:42.698 -07 000000610 INF: Cycle	15	Tile	7	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:42.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28812, sync = True, waitForSettling = True)
17-03-17 18:37:42.708 -07 000000610 INF: Z Motor: Moving to -0.131893 mm, started at -0.138581 mm, distance = 6.69 um
17-03-17 18:37:42.708 -07 000000610 INF: FPGA: Xmit ZDACW 28812\n [Z Motor]
17-03-17 18:37:42.708 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:37:42.718 -07 000000610 INF: FPGA: 'ZDACW 28812' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:42.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:42.718 -07 000000623 INF: FPGA: Recv ZDACR 28812
17-03-17 18:37:42.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.878 -07 000000480 INF: FPGA: Recv ZSGSRD 29827
17-03-17 18:37:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:42.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.888 -07 000000012 INF: FPGA: Recv ZSGSRD 29818
17-03-17 18:37:42.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29819
17-03-17 18:37:42.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.908 -07 000000462 INF: FPGA: Recv ZSGSRD 29822
17-03-17 18:37:42.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29818
17-03-17 18:37:42.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.928 -07 000000424 INF: FPGA: Recv ZSGSRD 29819
17-03-17 18:37:42.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.938 -07 000000608 INF: FPGA: Recv ZSGSRD 29819
17-03-17 18:37:42.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.948 -07 000000431 INF: FPGA: Recv ZSGSRD 29825
17-03-17 18:37:42.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.958 -07 000000512 INF: FPGA: Recv ZSGSRD 29820
17-03-17 18:37:42.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:42.968 -07 000000012 INF: FPGA: Recv ZSGSRD 29816
17-03-17 18:37:42.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:42.978 -07 000000438 INF: FPGA: Recv ZPIEZORD 25386
17-03-17 18:37:42.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:42.988 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.7 V.
17-03-17 18:37:42.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29820 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29819 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29816 (-131.1 uncal um), Max = 29827 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:37:42.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29820, posNoise = 7, negNoise = 4
17-03-17 18:37:42.988 -07 000000610 INF: Z Motor: After move to -0.131893, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:42.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:37:42.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:42.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:42.988 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:42.988 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:42.988 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:42.988 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:42.988 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:42.988 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:42.988 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:42.988 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:42.988 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:42.988 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:42.998 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:42.998 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:42.998 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:42.998 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:43.008 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:37:43.008 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:37:43.008 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:37:43.008 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:37:43.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28989 150\n [Camera]
17-03-17 18:37:43.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:43.608 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:37:43.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:37:43.608 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:43.608 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:43.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1093242984, 0x0, 391868352) start.
17-03-17 18:37:43.608 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:37:43.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:37:43.618 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:43.618 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:43.618 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1128665248, 0x0, 418435064) start.
17-03-17 18:37:43.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28989 779
17-03-17 18:37:43.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:44.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1093242984, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:37:44.008 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:37:44.008 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:44.018 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1128665248, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:37:44.018 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:37:44.018 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:44.018 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:44.018 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:37:44.018 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:37:44.028 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:37:44.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:44.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:44.138 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:44.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:44.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:44.268 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:44.268 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:44.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:37:44.268 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:44.268 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:37:44.328 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:37:44.328 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:44.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28989 150' command took 2 ms to send, 1308 ms to get response, and 1317 ms overall
17-03-17 18:37:44.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:44.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131893358078447. ------
17-03-17 18:37:44.338 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:44.338 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13851 mm
17-03-17 18:37:44.338 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:44.338 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:37:44.338 -07 000000431 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:37:44.338 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:44.338 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30257, sync = True, waitForSettling = False)
17-03-17 18:37:44.338 -07 000000593 INF: Z Motor: Moving to -0.138508 mm, started at -0.131893 mm, distance = -6.61 um
17-03-17 18:37:44.348 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:44.348 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:44.348 -07 000000448 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:37:44.358 -07 000000593 INF: FPGA: Xmit ZDACW 30257\n [Z Motor]
17-03-17 18:37:44.358 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:37:44.358 -07 000000431 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:44.358 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:37:44.358 -07 000000431 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:44.358 -07 000000431 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:37:44.368 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:44.368 -07 000000593 INF: FPGA: 'ZDACW 30257' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:37:44.378 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:44.388 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:44.388 -07 000000480 INF: FPGA: Recv ZDACR 30257
17-03-17 18:37:44.398 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:44.398 -07 000000593 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:37:44.568 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:44.568 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:37:44.638 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:37:44.638 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:37:44.638 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:44.648 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:44.648 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:37:44.648 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:37:44.648 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:44.648 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:44.648 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 18:37:44.658 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:37:44.748 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:37:44.748 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:37:44.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:44.788 -07 000000618 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:37:44.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:44.798 -07 000000431 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:44.798 -07 000000431 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:37:44.798 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.157 mm/sec
17-03-17 18:37:45.408 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.945808,
17-03-17 18:37:45.748 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:45.748 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:37:45.758 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.758 -07 000000431 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:45.778 -07 000000431 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:45.778 -07 000000431 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:45.778 -07 000000431 INF: Y Motor: Moved to 65.7148 after 1434 ms (table move)
17-03-17 18:37:45.778 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138508 mm (DAC = 30257)
17-03-17 18:37:45.778 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.778 -07 000000608 INF: FPGA: Recv ZSGSRD 30849
17-03-17 18:37:45.788 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:45.788 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.788 -07 000000431 INF: FPGA: Recv ZSGSRD 30847
17-03-17 18:37:45.798 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.798 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.798 -07 000000438 INF: FPGA: Recv ZSGSRD 30842
17-03-17 18:37:45.808 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.808 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.808 -07 000000608 INF: FPGA: Recv ZSGSRD 30848
17-03-17 18:37:45.818 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.818 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.818 -07 000000431 INF: FPGA: Recv ZSGSRD 30856
17-03-17 18:37:45.828 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.828 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.828 -07 000000480 INF: FPGA: Recv ZSGSRD 30847
17-03-17 18:37:45.838 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.838 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.838 -07 000000618 INF: FPGA: Recv ZSGSRD 30852
17-03-17 18:37:45.848 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.848 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.848 -07 000000431 INF: FPGA: Recv ZSGSRD 30845
17-03-17 18:37:45.858 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.858 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.858 -07 000000480 INF: FPGA: Recv ZSGSRD 30851
17-03-17 18:37:45.868 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.868 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:45.868 -07 000000431 INF: FPGA: Recv ZSGSRD 30850
17-03-17 18:37:45.878 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.878 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:45.878 -07 000000618 INF: FPGA: Recv ZPIEZORD 26737
17-03-17 18:37:45.888 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:45.888 -07 000000424 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.1 V.
17-03-17 18:37:45.888 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30849 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30848 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30842 (-137.7 uncal um), Max = 30856 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:37:45.888 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30849, posNoise = 7, negNoise = 7
17-03-17 18:37:45.888 -07 000000424 INF: Z Motor: After move to -0.138508, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:45.888 -07 000000424 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:37:45.888 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:45.938 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:37:45.938 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:45.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:45.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:45.938 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:45.938 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:45.938 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:45.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:45.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:45.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:45.948 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:45.948 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:45.958 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:37:45.958 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:37:45.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:46.008 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:46.208 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:46.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:46.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:46.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 18:37:46.248 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:46.248 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:46.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:37:46.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:37:46.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:46.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:46.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:37:46.348 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:46.348 -07 000000424 INF: Autofocus start
17-03-17 18:37:46.348 -07 000000424 INF: MeasureProfile start
17-03-17 18:37:46.348 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:46.358 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:46.358 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:46.358 -07 000000424 INF: MeasureProfile done
17-03-17 18:37:46.358 -07 000000424 INF: X=5  Z correction [um]=0.0001036296
17-03-17 18:37:46.358 -07 000000424 INF: Autofocus finished
17-03-17 18:37:46.558 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:46.558 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:37:46.558 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138503872372319. ----------
17-03-17 18:37:46.568 -07 000000610 INF: Cycle	15	Tile	8	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:46.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28770, sync = True, waitForSettling = True)
17-03-17 18:37:46.568 -07 000000610 INF: Z Motor: Moving to -0.131701 mm, started at -0.138504 mm, distance = 6.80 um
17-03-17 18:37:46.568 -07 000000610 INF: FPGA: Xmit ZDACW 28770\n [Z Motor]
17-03-17 18:37:46.568 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:37:46.578 -07 000000610 INF: FPGA: 'ZDACW 28770' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:46.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:46.578 -07 000000431 INF: FPGA: Recv ZDACR 28770
17-03-17 18:37:46.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:46.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:46.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.738 -07 000000448 INF: FPGA: Recv ZSGSRD 29796
17-03-17 18:37:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.748 -07 000000424 INF: FPGA: Recv ZSGSRD 29797
17-03-17 18:37:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.758 -07 000000480 INF: FPGA: Recv ZSGSRD 29791
17-03-17 18:37:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.768 -07 000000593 INF: FPGA: Recv ZSGSRD 29788
17-03-17 18:37:46.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29789
17-03-17 18:37:46.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.788 -07 000000480 INF: FPGA: Recv ZSGSRD 29792
17-03-17 18:37:46.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.798 -07 000000618 INF: FPGA: Recv ZSGSRD 29796
17-03-17 18:37:46.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.808 -07 000000593 INF: FPGA: Recv ZSGSRD 29793
17-03-17 18:37:46.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.818 -07 000000438 INF: FPGA: Recv ZSGSRD 29790
17-03-17 18:37:46.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:46.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29790
17-03-17 18:37:46.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:46.838 -07 000000618 INF: FPGA: Recv ZPIEZORD 25342
17-03-17 18:37:46.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:46.848 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.8 V.
17-03-17 18:37:46.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29792 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29792 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29788 (-130.9 uncal um), Max = 29797 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:37:46.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29792, posNoise = 5, negNoise = 4
17-03-17 18:37:46.848 -07 000000610 INF: Z Motor: After move to -0.131701, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:46.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:37:46.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:46.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:46.848 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:46.848 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:46.848 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:46.848 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:46.848 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:46.848 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:46.848 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:37:46.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:46.848 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:46.848 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:46.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:46.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:46.858 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:46.858 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:46.868 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:37:46.868 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:37:46.868 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:37:46.868 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:37:46.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28947 150\n [Camera]
17-03-17 18:37:47.068 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:47.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:47.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:47.468 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:47.468 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:47.468 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:37:47.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:47.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:47.468 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:47.468 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:47.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:37:47.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28947 779
17-03-17 18:37:47.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:37:47.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:37:47.848 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:37:47.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:47.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:37:47.848 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:37:47.848 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:47.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:47.848 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:47.848 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:37:47.858 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:37:47.998 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:47.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:47.998 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:48.108 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:48.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:48.108 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:48.108 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:48.108 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:37:48.118 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:48.118 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:37:48.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:37:48.188 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:48.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28947 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:37:48.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:48.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131713480138477. ------
17-03-17 18:37:48.198 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:48.198 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13802 mm
17-03-17 18:37:48.198 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:48.198 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:37:48.198 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:37:48.198 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:48.198 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30151, sync = True, waitForSettling = False)
17-03-17 18:37:48.198 -07 000000480 INF: Z Motor: Moving to -0.138022 mm, started at -0.131713 mm, distance = -6.31 um
17-03-17 18:37:48.208 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:48.208 -07 000000480 INF: FPGA: Xmit ZDACW 30151\n [Z Motor]
17-03-17 18:37:48.208 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:37:48.218 -07 000000480 INF: FPGA: 'ZDACW 30151' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:37:48.218 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:48.218 -07 000000501 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:37:48.228 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:48.228 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:37:48.228 -07 000000462 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:48.228 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:48.228 -07 000000462 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:37:48.238 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:48.238 -07 000000512 INF: FPGA: Recv ZDACR 30151
17-03-17 18:37:48.248 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:37:48.248 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:48.248 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:37:48.428 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:48.428 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 18:37:48.498 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:37:48.498 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:37:48.498 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:48.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:37:48.498 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:37:48.498 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:48.498 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:48.498 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:48.498 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 18:37:48.508 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:37:48.618 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:37:48.618 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:37:48.658 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:48.658 -07 000000448 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:37:48.668 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:48.668 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:48.668 -07 000000462 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:37:48.668 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-17 18:37:49.618 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:49.618 -07 000000618 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:37:49.628 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:49.628 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:49.648 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:49.648 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:49.648 -07 000000462 INF: Y Motor: Moved to 66.5400 after 1445 ms (table move)
17-03-17 18:37:49.648 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138022 mm (DAC = 30151)
17-03-17 18:37:49.648 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.648 -07 000000012 INF: FPGA: Recv ZSGSRD 30775
17-03-17 18:37:49.658 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:49.658 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.658 -07 000000012 INF: FPGA: Recv ZSGSRD 30773
17-03-17 18:37:49.668 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.668 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.668 -07 000000012 INF: FPGA: Recv ZSGSRD 30780
17-03-17 18:37:49.678 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.678 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.678 -07 000000618 INF: FPGA: Recv ZSGSRD 30778
17-03-17 18:37:49.688 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.688 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.688 -07 000000618 INF: FPGA: Recv ZSGSRD 30775
17-03-17 18:37:49.698 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.698 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.698 -07 000000618 INF: FPGA: Recv ZSGSRD 30781
17-03-17 18:37:49.708 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.708 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.708 -07 000000512 INF: FPGA: Recv ZSGSRD 30778
17-03-17 18:37:49.718 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.718 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.718 -07 000000593 INF: FPGA: Recv ZSGSRD 30774
17-03-17 18:37:49.728 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.728 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30777
17-03-17 18:37:49.738 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.738 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:49.738 -07 000000415 INF: FPGA: Recv ZSGSRD 30772
17-03-17 18:37:49.748 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.748 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:49.748 -07 000000415 INF: FPGA: Recv ZPIEZORD 26653
17-03-17 18:37:49.758 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:49.758 -07 000000608 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -9.1 V.
17-03-17 18:37:49.758 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30776 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30772 (-137.2 uncal um), Max = 30781 (-137.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:37:49.758 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30776, posNoise = 5, negNoise = 4
17-03-17 18:37:49.758 -07 000000608 INF: Z Motor: After move to -0.138022, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:49.758 -07 000000608 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:37:49.758 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:49.808 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:37:49.808 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:49.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:49.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:49.808 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:49.808 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:49.808 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:49.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:49.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:37:49.808 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:49.818 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:37:49.818 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:49.828 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:37:49.828 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:37:49.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:49.878 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:50.078 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:50.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:50.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:50.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 18:37:50.118 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:50.118 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:50.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:37:50.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:37:50.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:50.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:50.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 18:37:50.218 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:50.218 -07 000000415 INF: Autofocus start
17-03-17 18:37:50.218 -07 000000415 INF: MeasureProfile start
17-03-17 18:37:50.218 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:50.228 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:50.228 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:50.228 -07 000000415 INF: MeasureProfile done
17-03-17 18:37:50.228 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:37:50.228 -07 000000415 INF: Autofocus finished
17-03-17 18:37:50.428 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:50.428 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:37:50.438 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.13803490488597. ----------
17-03-17 18:37:50.438 -07 000000610 INF: Cycle	15	Tile	9	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:50.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28646, sync = True, waitForSettling = True)
17-03-17 18:37:50.438 -07 000000610 INF: Z Motor: Moving to -0.131133 mm, started at -0.138035 mm, distance = 6.90 um
17-03-17 18:37:50.438 -07 000000610 INF: FPGA: Xmit ZDACW 28646\n [Z Motor]
17-03-17 18:37:50.438 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:37:50.448 -07 000000610 INF: FPGA: 'ZDACW 28646' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:50.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:50.458 -07 000000512 INF: FPGA: Recv ZDACR 28646
17-03-17 18:37:50.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:37:50.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.618 -07 000000462 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:37:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.628 -07 000000512 INF: FPGA: Recv ZSGSRD 29699
17-03-17 18:37:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.638 -07 000000618 INF: FPGA: Recv ZSGSRD 29706
17-03-17 18:37:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.648 -07 000000512 INF: FPGA: Recv ZSGSRD 29703
17-03-17 18:37:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.658 -07 000000593 INF: FPGA: Recv ZSGSRD 29702
17-03-17 18:37:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.668 -07 000000462 INF: FPGA: Recv ZSGSRD 29702
17-03-17 18:37:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.678 -07 000000593 INF: FPGA: Recv ZSGSRD 29702
17-03-17 18:37:50.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.688 -07 000000608 INF: FPGA: Recv ZSGSRD 29704
17-03-17 18:37:50.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.698 -07 000000618 INF: FPGA: Recv ZSGSRD 29696
17-03-17 18:37:50.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:50.708 -07 000000593 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:37:50.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:50.718 -07 000000608 INF: FPGA: Recv ZPIEZORD 25287
17-03-17 18:37:50.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:50.728 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.7 V.
17-03-17 18:37:50.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29701 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29702 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29696 (-130.3 uncal um), Max = 29706 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:37:50.728 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29701, posNoise = 5, negNoise = 5
17-03-17 18:37:50.728 -07 000000610 INF: Z Motor: After move to -0.131133, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:50.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 18:37:50.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:50.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:50.728 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:50.728 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:50.728 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:50.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:50.728 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:50.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:50.728 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:50.728 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:50.738 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:50.738 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:50.738 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:50.738 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:50.738 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:50.738 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:50.748 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:37:50.748 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:37:50.748 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:37:50.748 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:37:50.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28823 150\n [Camera]
17-03-17 18:37:50.768 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.955391,
17-03-17 18:37:50.948 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:51.338 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:51.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:51.348 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:51.348 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:51.348 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:37:51.348 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:51.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:51.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:51.348 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:51.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 18:37:51.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28823 779
17-03-17 18:37:51.608 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:51.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:51.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:51.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:37:51.728 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:37:51.728 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:51.728 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:51.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:37:51.738 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:37:51.738 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:51.738 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:37:51.738 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:51.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:37:51.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:51.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:51.878 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:51.988 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:51.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:51.998 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:51.998 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:51.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:37:51.998 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:51.998 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:37:52.068 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:37:52.068 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:52.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28823 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-17 18:37:52.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:52.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131128876833577. ------
17-03-17 18:37:52.068 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:52.068 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13792 mm
17-03-17 18:37:52.068 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:52.078 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:37:52.078 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:37:52.078 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:52.078 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30128, sync = True, waitForSettling = False)
17-03-17 18:37:52.078 -07 000000618 INF: Z Motor: Moving to -0.137917 mm, started at -0.131129 mm, distance = -6.79 um
17-03-17 18:37:52.078 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:52.078 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:37:52.078 -07 000000431 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:37:52.088 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:52.088 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:52.088 -07 000000438 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:52.088 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:52.088 -07 000000438 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:37:52.098 -07 000000618 INF: FPGA: Xmit ZDACW 30128\n [Z Motor]
17-03-17 18:37:52.098 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:37:52.108 -07 000000618 INF: FPGA: 'ZDACW 30128' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:37:52.108 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:52.118 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:52.118 -07 000000415 INF: FPGA: Recv ZDACR 30128
17-03-17 18:37:52.128 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:37:52.128 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:37:52.288 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:52.288 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 18:37:52.398 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:37:52.398 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:37:52.398 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:52.398 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:37:52.398 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:37:52.398 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:52.398 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:52.398 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:52.398 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 18:37:52.408 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:37:52.488 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:37:52.488 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 18:37:52.518 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:52.518 -07 000000462 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:37:52.528 -07 000000438 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:37:52.528 -07 000000438 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:52.528 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:37:52.528 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.843 mm, average velocity = 2.106 mm/sec
17-03-17 18:37:53.478 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:53.478 -07 000000482 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:37:53.488 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:53.488 -07 000000438 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:53.508 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:53.508 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:37:53.508 -07 000000438 INF: Y Motor: Moved to 67.3730 after 1430 ms (table move)
17-03-17 18:37:53.508 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137917 mm (DAC = 30128)
17-03-17 18:37:53.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.508 -07 000000618 INF: FPGA: Recv ZSGSRD 30765
17-03-17 18:37:53.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:53.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.518 -07 000000618 INF: FPGA: Recv ZSGSRD 30764
17-03-17 18:37:53.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30748
17-03-17 18:37:53.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:53.538 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.538 -07 000000012 INF: FPGA: Recv ZSGSRD 30756
17-03-17 18:37:53.548 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.548 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.548 -07 000000462 INF: FPGA: Recv ZSGSRD 30757
17-03-17 18:37:53.558 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.558 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.558 -07 000000482 INF: FPGA: Recv ZSGSRD 30751
17-03-17 18:37:53.568 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.568 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.568 -07 000000012 INF: FPGA: Recv ZSGSRD 30757
17-03-17 18:37:53.578 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.578 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.578 -07 000000415 INF: FPGA: Recv ZSGSRD 30765
17-03-17 18:37:53.588 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.588 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30764
17-03-17 18:37:53.598 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.598 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:53.598 -07 000000618 INF: FPGA: Recv ZSGSRD 30760
17-03-17 18:37:53.608 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.608 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:53.608 -07 000000618 INF: FPGA: Recv ZPIEZORD 26651
17-03-17 18:37:53.618 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:53.618 -07 000000608 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.0 V.
17-03-17 18:37:53.618 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30759 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30758 (-137.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30748 (-137.1 uncal um), Max = 30765 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:37:53.618 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30759, posNoise = 6, negNoise = 11
17-03-17 18:37:53.618 -07 000000608 INF: Z Motor: After move to -0.137917, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:53.618 -07 000000608 INF: Z Motor: Settle wait time = 1433 ms, measure time = 106 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:37:53.618 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:53.668 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:37:53.668 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:53.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:53.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:53.668 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:53.668 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:53.668 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:53.668 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:53.668 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:37:53.668 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:53.678 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:53.678 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:53.678 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:37:53.678 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:37:53.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:53.728 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:37:53.928 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:37:53.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:37:53.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:53.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:37:53.968 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:53.968 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:53.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:37:54.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:37:54.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:54.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:37:54.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:37:54.068 -07 000000415 INF: Autofocus start
17-03-17 18:37:54.068 -07 000000415 INF: MeasureProfile start
17-03-17 18:37:54.068 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:54.068 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:54.078 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:54.078 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:54.078 -07 000000415 INF: MeasureProfile done
17-03-17 18:37:54.078 -07 000000415 INF: X=13  Z correction [um]=0.03858674
17-03-17 18:37:54.078 -07 000000415 INF: Autofocus finished
17-03-17 18:37:54.278 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:54.278 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:54.278 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.13792569327956. ----------
17-03-17 18:37:54.288 -07 000000610 INF: Cycle	15	Tile	10	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:54.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28649, sync = True, waitForSettling = True)
17-03-17 18:37:54.288 -07 000000610 INF: Z Motor: Moving to -0.131147 mm, started at -0.137926 mm, distance = 6.78 um
17-03-17 18:37:54.288 -07 000000610 INF: FPGA: Xmit ZDACW 28649\n [Z Motor]
17-03-17 18:37:54.288 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:37:54.298 -07 000000610 INF: FPGA: 'ZDACW 28649' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:54.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:54.298 -07 000000512 INF: FPGA: Recv ZDACR 28649
17-03-17 18:37:54.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.458 -07 000000431 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:37:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.468 -07 000000512 INF: FPGA: Recv ZSGSRD 29709
17-03-17 18:37:54.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.478 -07 000000462 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:37:54.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:37:54.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.498 -07 000000462 INF: FPGA: Recv ZSGSRD 29702
17-03-17 18:37:54.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29704
17-03-17 18:37:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29706
17-03-17 18:37:54.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.528 -07 000000482 INF: FPGA: Recv ZSGSRD 29702
17-03-17 18:37:54.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.538 -07 000000478 INF: FPGA: Recv ZSGSRD 29705
17-03-17 18:37:54.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:54.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:37:54.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:54.558 -07 000000618 INF: FPGA: Recv ZPIEZORD 25263
17-03-17 18:37:54.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:54.568 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.7 V.
17-03-17 18:37:54.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29704 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29703 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29700 (-130.3 uncal um), Max = 29709 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:37:54.568 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29704, posNoise = 5, negNoise = 4
17-03-17 18:37:54.568 -07 000000610 INF: Z Motor: After move to -0.131147, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:54.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:37:54.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:54.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:54.568 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:54.568 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:54.568 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:54.568 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:54.568 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:54.568 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:37:54.568 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:54.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:54.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:54.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:54.578 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:54.578 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:54.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:37:54.578 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:54.578 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:37:54.578 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:37:54.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:37:54.588 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:37:54.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28826 150\n [Camera]
17-03-17 18:37:54.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:55.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:37:55.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:37:55.178 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:55.178 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:55.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 18:37:55.178 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:37:55.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:37:55.188 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:55.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:55.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 18:37:55.368 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28826 779
17-03-17 18:37:55.518 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:55.558 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:37:55.558 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:37:55.558 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:55.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:37:55.558 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:37:55.558 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:55.568 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:55.568 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:37:55.568 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:55.568 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:37:55.718 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:55.718 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:55.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:55.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:55.718 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:55.718 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:55.718 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:55.718 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:37:55.728 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:55.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:37:55.908 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:37:55.908 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:55.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28826 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-17 18:37:55.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:55.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131148149470002. ------
17-03-17 18:37:55.908 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:55.908 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13754 mm
17-03-17 18:37:55.908 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:55.908 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:37:55.908 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30046, sync = True, waitForSettling = False)
17-03-17 18:37:55.908 -07 000000593 INF: Z Motor: Moving to -0.137542 mm, started at -0.131148 mm, distance = -6.39 um
17-03-17 18:37:55.908 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:55.908 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 18:37:55.918 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:55.918 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:37:55.918 -07 000000618 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:37:55.928 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:55.928 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:55.928 -07 000000462 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:55.928 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:55.928 -07 000000462 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:37:55.938 -07 000000593 INF: FPGA: Xmit ZDACW 30046\n [Z Motor]
17-03-17 18:37:55.938 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:37:55.948 -07 000000593 INF: FPGA: 'ZDACW 30046' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:37:55.948 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:37:55.958 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:55.958 -07 000000618 INF: FPGA: Recv ZDACR 30046
17-03-17 18:37:55.968 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:37:55.968 -07 000000593 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:37:56.108 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:37:56.108 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:37:56.108 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:56.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:37:56.108 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:37:56.108 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:56.118 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:56.118 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:56.118 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:37:56.118 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:37:56.128 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:37:56.128 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 216 ms overall
17-03-17 18:37:56.138 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.99219,
17-03-17 18:37:56.318 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:37:56.318 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:37:56.358 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:56.358 -07 000000415 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:37:56.368 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:37:56.368 -07 000000462 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:56.368 -07 000000462 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:37:56.368 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 18:37:56.608 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:37:56.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:37:57.318 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:57.318 -07 000000482 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:37:57.328 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:57.328 -07 000000462 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:57.338 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:37:57.338 -07 000000462 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:37:57.338 -07 000000462 INF: Y Motor: Moved to 68.2056 after 1430 ms (table move)
17-03-17 18:37:57.348 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137542 mm (DAC = 30046)
17-03-17 18:37:57.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.348 -07 000000482 INF: FPGA: Recv ZSGSRD 30705
17-03-17 18:37:57.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:37:57.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.358 -07 000000478 INF: FPGA: Recv ZSGSRD 30694
17-03-17 18:37:57.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.368 -07 000000618 INF: FPGA: Recv ZSGSRD 30693
17-03-17 18:37:57.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.378 -07 000000431 INF: FPGA: Recv ZSGSRD 30709
17-03-17 18:37:57.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.388 -07 000000462 INF: FPGA: Recv ZSGSRD 30703
17-03-17 18:37:57.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.398 -07 000000593 INF: FPGA: Recv ZSGSRD 30697
17-03-17 18:37:57.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.408 -07 000000415 INF: FPGA: Recv ZSGSRD 30702
17-03-17 18:37:57.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.418 -07 000000593 INF: FPGA: Recv ZSGSRD 30700
17-03-17 18:37:57.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.428 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.428 -07 000000512 INF: FPGA: Recv ZSGSRD 30693
17-03-17 18:37:57.438 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.438 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:57.438 -07 000000478 INF: FPGA: Recv ZSGSRD 30695
17-03-17 18:37:57.448 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.448 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:57.448 -07 000000618 INF: FPGA: Recv ZPIEZORD 26568
17-03-17 18:37:57.458 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:57.458 -07 000000608 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -9.1 V.
17-03-17 18:37:57.458 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30699 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30698 (-136.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30693 (-136.7 uncal um), Max = 30709 (-136.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:37:57.458 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30699, posNoise = 10, negNoise = 6
17-03-17 18:37:57.458 -07 000000608 INF: Z Motor: After move to -0.137542, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:57.458 -07 000000608 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:37:57.458 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:37:57.508 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:37:57.508 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:37:57.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:57.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:57.508 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:57.508 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:57.508 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:37:57.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:57.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:37:57.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:37:57.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 18:37:57.518 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:37:57.528 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:37:57.528 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:37:57.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:37:57.578 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:37:57.778 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:37:57.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:37:57.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:37:57.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:37:57.818 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:37:57.818 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:37:57.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:37:57.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:37:57.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:57.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:37:57.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:37:57.918 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:57.918 -07 000000415 INF: Autofocus start
17-03-17 18:37:57.918 -07 000000415 INF: MeasureProfile start
17-03-17 18:37:57.918 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:57.928 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:37:57.928 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:37:57.928 -07 000000415 INF: MeasureProfile done
17-03-17 18:37:57.928 -07 000000415 INF: X=-128  Z correction [um]=-0.6264838
17-03-17 18:37:57.928 -07 000000415 INF: Autofocus finished
17-03-17 18:37:58.128 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:37:58.128 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:37:58.128 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137540240551055. ----------
17-03-17 18:37:58.128 -07 000000610 INF: Cycle	15	Tile	11	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:37:58.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28422, sync = True, waitForSettling = True)
17-03-17 18:37:58.138 -07 000000610 INF: Z Motor: Moving to -0.130108 mm, started at -0.137540 mm, distance = 7.43 um
17-03-17 18:37:58.138 -07 000000610 INF: FPGA: Xmit ZDACW 28422\n [Z Motor]
17-03-17 18:37:58.138 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:37:58.148 -07 000000610 INF: FPGA: 'ZDACW 28422' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:37:58.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:37:58.148 -07 000000415 INF: FPGA: Recv ZDACR 28422
17-03-17 18:37:58.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:37:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.308 -07 000000478 INF: FPGA: Recv ZSGSRD 29548
17-03-17 18:37:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:37:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.318 -07 000000462 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:37:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.328 -07 000000431 INF: FPGA: Recv ZSGSRD 29545
17-03-17 18:37:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.338 -07 000000478 INF: FPGA: Recv ZSGSRD 29539
17-03-17 18:37:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29540
17-03-17 18:37:58.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.358 -07 000000482 INF: FPGA: Recv ZSGSRD 29539
17-03-17 18:37:58.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.368 -07 000000478 INF: FPGA: Recv ZSGSRD 29540
17-03-17 18:37:58.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.378 -07 000000593 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:37:58.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.388 -07 000000512 INF: FPGA: Recv ZSGSRD 29548
17-03-17 18:37:58.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:37:58.398 -07 000000608 INF: FPGA: Recv ZSGSRD 29543
17-03-17 18:37:58.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:37:58.408 -07 000000618 INF: FPGA: Recv ZPIEZORD 25095
17-03-17 18:37:58.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:37:58.418 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.8 V.
17-03-17 18:37:58.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29543 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29544 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29539 (-129.3 uncal um), Max = 29548 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:37:58.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29543, posNoise = 5, negNoise = 4
17-03-17 18:37:58.418 -07 000000610 INF: Z Motor: After move to -0.130108, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:37:58.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:37:58.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:37:58.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:37:58.418 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:37:58.418 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:37:58.418 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:37:58.418 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:37:58.418 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:37:58.418 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:37:58.418 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:37:58.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:37:58.428 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:37:58.428 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:37:58.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:37:58.428 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:37:58.428 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:37:58.428 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:37:58.438 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:37:58.438 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:37:58.438 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:37:58.438 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:37:58.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28599 150\n [Camera]
17-03-17 18:37:58.638 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:37:59.038 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:37:59.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:37:59.038 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:59.038 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:59.038 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 18:37:59.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:37:59.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:37:59.038 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:59.038 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:59.038 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 18:37:59.228 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28599 779
17-03-17 18:37:59.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:37:59.418 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:37:59.418 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:37:59.418 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:59.418 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:37:59.418 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:37:59.418 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:59.418 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:59.428 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:37:59.428 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:37:59.548 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 18:37:59.558 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:37:59.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:37:59.568 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:37:59.568 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:37:59.568 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:37:59.568 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:37:59.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:37:59.568 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:37:59.568 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:37:59.568 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:37:59.758 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:37:59.758 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:37:59.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28599 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-17 18:37:59.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:37:59.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130113851315179. ------
17-03-17 18:37:59.758 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:37:59.758 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13668 mm
17-03-17 18:37:59.758 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:37:59.768 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29858, sync = True, waitForSettling = False)
17-03-17 18:37:59.768 -07 000000618 INF: Z Motor: Moving to -0.136681 mm, started at -0.130114 mm, distance = -6.57 um
17-03-17 18:37:59.768 -07 000000618 INF: FPGA: Xmit ZDACW 29858\n [Z Motor]
17-03-17 18:37:59.768 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:37:59.768 -07 000000462 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:37:59.778 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:37:59.948 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:37:59.948 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:37:59.948 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:59.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:37:59.948 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:37:59.948 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:37:59.958 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:59.958 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:37:59.958 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:37:59.968 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:37:59.998 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:37:59.998 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:37:59.998 -07 000000431 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:37:59.998 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 230 ms to get response, and 232 ms overall
17-03-17 18:37:59.998 -07 000000618 INF: FPGA: 'ZDACW 29858' command took 0 ms to send, 220 ms to get response, and 226 ms overall
17-03-17 18:37:59.998 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:37:59.998 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 210 ms to get response, and 226 ms overall
17-03-17 18:37:59.998 -07 000000462 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:37:59.998 -07 000000462 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:37:59.998 -07 000000462 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:38:00.008 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:00.008 -07 000000431 INF: FPGA: Recv ZDACR 29858
17-03-17 18:38:00.018 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:38:00.018 -07 000000618 INF: Z Motor: MoveAbsStepped took 246 ms (did NOT wait for settling yet))
17-03-17 18:38:00.018 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:00.198 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:00.198 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:38:00.388 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:38:00.388 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 394 ms overall
17-03-17 18:38:00.428 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:00.428 -07 000000618 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:38:00.438 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:38:00.438 -07 000000462 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:00.438 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:38:00.438 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-17 18:38:01.388 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:01.388 -07 000000478 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:38:01.398 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:01.398 -07 000000462 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:01.418 -07 000000462 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:01.418 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:38:01.418 -07 000000462 INF: Y Motor: Moved to 69.0278 after 1652 ms (table move)
17-03-17 18:38:01.428 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136681 mm (DAC = 29858)
17-03-17 18:38:01.428 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30564
17-03-17 18:38:01.438 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:38:01.438 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30567
17-03-17 18:38:01.448 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:01.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.448 -07 000000478 INF: FPGA: Recv ZSGSRD 30562
17-03-17 18:38:01.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:01.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.458 -07 000000618 INF: FPGA: Recv ZSGSRD 30570
17-03-17 18:38:01.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:01.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.468 -07 000000593 INF: FPGA: Recv ZSGSRD 30562
17-03-17 18:38:01.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:01.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.478 -07 000000478 INF: FPGA: Recv ZSGSRD 30563
17-03-17 18:38:01.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:01.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.488 -07 000000593 INF: FPGA: Recv ZSGSRD 30559
17-03-17 18:38:01.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:01.508 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.023489,
17-03-17 18:38:01.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.518 -07 000000431 INF: FPGA: Recv ZSGSRD 30563
17-03-17 18:38:01.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:38:01.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.548 -07 000000618 INF: FPGA: Recv ZSGSRD 30559
17-03-17 18:38:01.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:38:01.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:01.558 -07 000000593 INF: FPGA: Recv ZSGSRD 30569
17-03-17 18:38:01.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:01.588 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:01.588 -07 000000618 INF: FPGA: Recv ZPIEZORD 26410
17-03-17 18:38:01.598 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:38:01.598 -07 000000415 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.556 V. Piezo Error = -9.1 V.
17-03-17 18:38:01.598 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30564 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30563 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30559 (-135.8 uncal um), Max = 30570 (-135.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:38:01.598 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30564, posNoise = 6, negNoise = 5
17-03-17 18:38:01.598 -07 000000415 INF: Z Motor: After move to -0.136681, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:01.598 -07 000000415 INF: Z Motor: Settle wait time = 1658 ms, measure time = 168 ms (allowed 150 ms), total time = 1826 ms
17-03-17 18:38:01.598 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 168 ms, longer than max expected time of 150 ms
17-03-17 18:38:01.598 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1832 ms
17-03-17 18:38:01.598 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:01.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:01.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:01.598 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:01.608 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:01.608 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:01.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:01.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:01.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:01.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:01.608 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:01.608 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:01.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:01.618 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:38:01.618 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:38:01.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:01.658 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:38:01.858 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:38:01.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:38:01.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:01.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:38:01.898 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:38:01.898 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:01.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:38:01.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:38:01.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:01.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:38:01.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:38:01.998 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:01.998 -07 000000462 INF: Autofocus start
17-03-17 18:38:01.998 -07 000000462 INF: MeasureProfile start
17-03-17 18:38:01.998 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:02.008 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:38:02.008 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:02.008 -07 000000462 INF: MeasureProfile done
17-03-17 18:38:02.008 -07 000000462 INF: X=40  Z correction [um]=0.1684672
17-03-17 18:38:02.008 -07 000000462 INF: Autofocus finished
17-03-17 18:38:02.208 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:02.208 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 18:38:02.218 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136672971911917. ----------
17-03-17 18:38:02.218 -07 000000610 INF: Cycle	15	Tile	12	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:02.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28408, sync = True, waitForSettling = True)
17-03-17 18:38:02.218 -07 000000610 INF: Z Motor: Moving to -0.130043 mm, started at -0.136673 mm, distance = 6.63 um
17-03-17 18:38:02.218 -07 000000610 INF: FPGA: Xmit ZDACW 28408\n [Z Motor]
17-03-17 18:38:02.218 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:38:02.228 -07 000000610 INF: FPGA: 'ZDACW 28408' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:38:02.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:02.228 -07 000000462 INF: FPGA: Recv ZDACR 28408
17-03-17 18:38:02.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:02.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.388 -07 000000478 INF: FPGA: Recv ZSGSRD 29534
17-03-17 18:38:02.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:02.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.398 -07 000000462 INF: FPGA: Recv ZSGSRD 29532
17-03-17 18:38:02.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.408 -07 000000623 INF: FPGA: Recv ZSGSRD 29533
17-03-17 18:38:02.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29538
17-03-17 18:38:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.428 -07 000000593 INF: FPGA: Recv ZSGSRD 29539
17-03-17 18:38:02.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.438 -07 000000618 INF: FPGA: Recv ZSGSRD 29526
17-03-17 18:38:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.448 -07 000000415 INF: FPGA: Recv ZSGSRD 29533
17-03-17 18:38:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29535
17-03-17 18:38:02.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.468 -07 000000623 INF: FPGA: Recv ZSGSRD 29535
17-03-17 18:38:02.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:02.478 -07 000000478 INF: FPGA: Recv ZSGSRD 29533
17-03-17 18:38:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:02.488 -07 000000618 INF: FPGA: Recv ZPIEZORD 25031
17-03-17 18:38:02.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:02.498 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.335 V. Piezo Error = -9.9 V.
17-03-17 18:38:02.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29534 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29534 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29526 (-129.2 uncal um), Max = 29539 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:38:02.498 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29534, posNoise = 5, negNoise = 8
17-03-17 18:38:02.498 -07 000000610 INF: Z Motor: After move to -0.130043, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:02.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:38:02.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:02.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:02.498 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:02.498 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:02.498 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:02.498 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:02.498 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:02.498 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:02.498 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:38:02.498 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:02.498 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:02.498 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:02.508 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:38:02.508 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:02.508 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:38:02.508 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:02.518 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:38:02.518 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:38:02.518 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:38:02.518 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:38:02.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28584 150\n [Camera]
17-03-17 18:38:02.718 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:03.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:03.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:03.118 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:03.118 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:03.118 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 18:38:03.118 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:03.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:03.118 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:03.118 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:03.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 18:38:03.308 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28584 779
17-03-17 18:38:03.458 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:03.498 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:38:03.498 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:38:03.498 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:03.508 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:03.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:38:03.508 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:38:03.508 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:03.508 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:38:03.518 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:38:03.518 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:38:03.648 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:03.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:03.648 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:03.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:03.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:03.758 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:03.758 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:03.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:38:03.768 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:03.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:38:03.838 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:38:03.838 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:03.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28584 150' command took 2 ms to send, 1307 ms to get response, and 1318 ms overall
17-03-17 18:38:03.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:38:03.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130056033405903. ------
17-03-17 18:38:03.848 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:03.848 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13648 mm
17-03-17 18:38:03.848 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:38:03.848 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:38:03.848 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:38:03.858 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:04.168 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:38:04.168 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:38:04.168 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:04.168 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:38:04.168 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:38:04.168 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:04.168 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:04.168 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:04.168 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 18:38:04.178 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:38:04.198 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:04.198 -07 000000593 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:38:04.198 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 336 ms to get response, and 350 ms overall
17-03-17 18:38:04.198 -07 000000462 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:04.198 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:38:04.198 -07 000000462 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:38:04.198 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 346 ms to get response, and 352 ms overall
17-03-17 18:38:04.198 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:04.198 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29813, sync = True, waitForSettling = False)
17-03-17 18:38:04.198 -07 000000415 INF: Z Motor: Moving to -0.136475 mm, started at -0.130056 mm, distance = -6.42 um
17-03-17 18:38:04.208 -07 000000415 INF: FPGA: Xmit ZDACW 29813\n [Z Motor]
17-03-17 18:38:04.208 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:38:04.218 -07 000000415 INF: FPGA: 'ZDACW 29813' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:38:04.218 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:38:04.228 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:04.228 -07 000000593 INF: FPGA: Recv ZDACR 29813
17-03-17 18:38:04.238 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:38:04.238 -07 000000415 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 18:38:04.418 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:04.418 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 214 ms overall
17-03-17 18:38:04.578 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:38:04.578 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-17 18:38:04.618 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:04.618 -07 000000593 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:38:04.628 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:38:04.628 -07 000000462 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:04.628 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:38:04.628 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.235 mm/sec
17-03-17 18:38:05.578 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:05.578 -07 000000623 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:38:05.588 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:05.588 -07 000000462 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:05.608 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:05.608 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:38:05.608 -07 000000462 INF: Y Motor: Moved to 69.8643 after 1754 ms (table move)
17-03-17 18:38:05.608 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136475 mm (DAC = 29813)
17-03-17 18:38:05.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.618 -07 000000623 INF: FPGA: Recv ZSGSRD 30532
17-03-17 18:38:05.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:38:05.618 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.618 -07 000000462 INF: FPGA: Recv ZSGSRD 30539
17-03-17 18:38:05.628 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:38:05.628 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.628 -07 000000623 INF: FPGA: Recv ZSGSRD 30537
17-03-17 18:38:05.638 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.638 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.638 -07 000000415 INF: FPGA: Recv ZSGSRD 30525
17-03-17 18:38:05.648 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.648 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.648 -07 000000462 INF: FPGA: Recv ZSGSRD 30524
17-03-17 18:38:05.658 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:05.658 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.658 -07 000000462 INF: FPGA: Recv ZSGSRD 30541
17-03-17 18:38:05.668 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.668 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.668 -07 000000415 INF: FPGA: Recv ZSGSRD 30537
17-03-17 18:38:05.678 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.678 -07 000000593 INF: FPGA: Recv ZSGSRD 30534
17-03-17 18:38:05.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.688 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.688 -07 000000623 INF: FPGA: Recv ZSGSRD 30535
17-03-17 18:38:05.698 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.698 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:05.698 -07 000000593 INF: FPGA: Recv ZSGSRD 30537
17-03-17 18:38:05.708 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.708 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:05.708 -07 000000415 INF: FPGA: Recv ZPIEZORD 26350
17-03-17 18:38:05.718 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:05.718 -07 000000618 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.2 V.
17-03-17 18:38:05.718 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30534 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30536 (-135.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30524 (-135.6 uncal um), Max = 30541 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:38:05.718 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30534, posNoise = 7, negNoise = 10
17-03-17 18:38:05.718 -07 000000618 INF: Z Motor: After move to -0.136475, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:05.718 -07 000000618 INF: Z Motor: Settle wait time = 1405 ms, measure time = 107 ms (allowed 150 ms), total time = 1512 ms
17-03-17 18:38:05.718 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:38:05.768 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1916 ms
17-03-17 18:38:05.768 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:05.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:05.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:05.768 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:05.768 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:05.768 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:05.768 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:05.768 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:05.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:05.778 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:05.778 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:05.788 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:38:05.788 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:38:05.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:05.838 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:38:06.038 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:38:06.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:38:06.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:06.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:38:06.068 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:38:06.068 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:06.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:38:06.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:38:06.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:06.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:38:06.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:38:06.268 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:06.268 -07 000000618 INF: Autofocus start
17-03-17 18:38:06.268 -07 000000618 INF: MeasureProfile start
17-03-17 18:38:06.268 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:06.278 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:38:06.278 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:06.278 -07 000000618 INF: MeasureProfile done
17-03-17 18:38:06.278 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:38:06.278 -07 000000618 INF: Autofocus finished
17-03-17 18:38:06.478 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:06.478 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:38:06.478 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136480245547664. ----------
17-03-17 18:38:06.478 -07 000000610 INF: Cycle	15	Tile	13	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:06.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28308, sync = True, waitForSettling = True)
17-03-17 18:38:06.488 -07 000000610 INF: Z Motor: Moving to -0.129586 mm, started at -0.136480 mm, distance = 6.89 um
17-03-17 18:38:06.488 -07 000000610 INF: FPGA: Xmit ZDACW 28308\n [Z Motor]
17-03-17 18:38:06.488 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:38:06.498 -07 000000610 INF: FPGA: 'ZDACW 28308' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:38:06.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:06.498 -07 000000480 INF: FPGA: Recv ZDACR 28308
17-03-17 18:38:06.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:06.608 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:06.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:06.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.658 -07 000000415 INF: FPGA: Recv ZSGSRD 29457
17-03-17 18:38:06.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.668 -07 000000424 INF: FPGA: Recv ZSGSRD 29461
17-03-17 18:38:06.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.678 -07 000000593 INF: FPGA: Recv ZSGSRD 29461
17-03-17 18:38:06.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.688 -07 000000501 INF: FPGA: Recv ZSGSRD 29463
17-03-17 18:38:06.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.698 -07 000000593 INF: FPGA: Recv ZSGSRD 29460
17-03-17 18:38:06.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.708 -07 000000480 INF: FPGA: Recv ZSGSRD 29460
17-03-17 18:38:06.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.718 -07 000000618 INF: FPGA: Recv ZSGSRD 29465
17-03-17 18:38:06.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.728 -07 000000480 INF: FPGA: Recv ZSGSRD 29462
17-03-17 18:38:06.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.738 -07 000000618 INF: FPGA: Recv ZSGSRD 29458
17-03-17 18:38:06.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:06.748 -07 000000623 INF: FPGA: Recv ZSGSRD 29460
17-03-17 18:38:06.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:06.758 -07 000000618 INF: FPGA: Recv ZPIEZORD 24972
17-03-17 18:38:06.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:06.768 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.8 V.
17-03-17 18:38:06.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29461 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29457 (-128.8 uncal um), Max = 29465 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:38:06.768 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29461, posNoise = 4, negNoise = 4
17-03-17 18:38:06.768 -07 000000610 INF: Z Motor: After move to -0.129586, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:06.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:38:06.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:06.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:06.768 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:06.768 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:06.768 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:06.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:06.768 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:06.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:06.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:06.768 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:06.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:38:06.768 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:06.778 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:06.778 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:06.778 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:38:06.778 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:06.788 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:38:06.788 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:38:06.788 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:38:06.788 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:38:06.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28485 150\n [Camera]
17-03-17 18:38:06.908 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.024884,
17-03-17 18:38:06.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:07.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:07.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:07.388 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:07.388 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:07.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 18:38:07.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:07.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:07.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:07.388 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:07.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 18:38:07.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28485 779
17-03-17 18:38:07.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:07.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:38:07.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:38:07.788 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:07.788 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:38:07.788 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:38:07.898 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:07.898 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 115 ms.
17-03-17 18:38:07.898 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 18:38:07.898 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:38:07.908 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 18:38:07.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:07.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:07.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:07.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:07.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:07.918 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:07.918 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:07.918 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:38:07.928 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:07.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:38:08.108 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:38:08.108 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:08.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28485 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:38:08.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:38:08.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129587065919555. ------
17-03-17 18:38:08.118 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13604 mm
17-03-17 18:38:08.118 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:38:08.118 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:08.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:38:08.298 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:38:08.298 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:08.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:38:08.308 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:38:08.308 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:08.308 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:38:08.308 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:38:08.308 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:38:08.318 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:38:08.318 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:38:08.318 -07 000000012 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 18:38:08.318 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:08.328 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:08.328 -07 000000501 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:38:08.328 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 202 ms to get response, and 209 ms overall
17-03-17 18:38:08.328 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 18:38:08.328 -07 000000012 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:08.328 -07 000000012 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:38:08.328 -07 000000012 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:38:08.328 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29718, sync = True, waitForSettling = False)
17-03-17 18:38:08.328 -07 000000501 INF: Z Motor: Moving to -0.136040 mm, started at -0.129587 mm, distance = -6.45 um
17-03-17 18:38:08.328 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:38:08.338 -07 000000501 INF: FPGA: Xmit ZDACW 29718\n [Z Motor]
17-03-17 18:38:08.348 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:09.048 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:38:09.048 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:09.048 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:38:09.048 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 690 ms to get response, and 717 ms overall
17-03-17 18:38:09.048 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 710 ms to get response, and 717 ms overall
17-03-17 18:38:09.048 -07 000000501 INF: FPGA: 'ZDACW 29718' command took 0 ms to send, 700 ms to get response, and 716 ms overall
17-03-17 18:38:09.048 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:09.048 -07 000000448 INF: FPGA: Recv ZDACR 29718
17-03-17 18:38:09.058 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:38:09.058 -07 000000501 INF: Z Motor: MoveAbsStepped took 726 ms (did NOT wait for settling yet))
17-03-17 18:38:09.078 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:09.088 -07 000000448 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:38:09.088 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:38:09.088 -07 000000012 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:09.088 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:38:09.088 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 717 ms, distance = 0.838 mm, average velocity = 1.169 mm/sec
17-03-17 18:38:10.038 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:10.038 -07 000000448 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:38:10.048 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.048 -07 000000012 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:10.068 -07 000000012 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:10.068 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:38:10.068 -07 000000012 INF: Y Motor: Moved to 70.6890 after 1742 ms (table move)
17-03-17 18:38:10.068 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136040 mm (DAC = 29718)
17-03-17 18:38:10.068 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.068 -07 000000480 INF: FPGA: Recv ZSGSRD 30470
17-03-17 18:38:10.078 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:38:10.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.078 -07 000000501 INF: FPGA: Recv ZSGSRD 30469
17-03-17 18:38:10.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:10.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.088 -07 000000480 INF: FPGA: Recv ZSGSRD 30466
17-03-17 18:38:10.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.098 -07 000000501 INF: FPGA: Recv ZSGSRD 30464
17-03-17 18:38:10.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.108 -07 000000012 INF: FPGA: Recv ZSGSRD 30467
17-03-17 18:38:10.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.118 -07 000000448 INF: FPGA: Recv ZSGSRD 30468
17-03-17 18:38:10.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.128 -07 000000012 INF: FPGA: Recv ZSGSRD 30465
17-03-17 18:38:10.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.138 -07 000000480 INF: FPGA: Recv ZSGSRD 30466
17-03-17 18:38:10.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.148 -07 000000448 INF: FPGA: Recv ZSGSRD 30465
17-03-17 18:38:10.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:10.158 -07 000000012 INF: FPGA: Recv ZSGSRD 30467
17-03-17 18:38:10.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.168 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:10.168 -07 000000501 INF: FPGA: Recv ZPIEZORD 26295
17-03-17 18:38:10.178 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.178 -07 000000618 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.535 V. Piezo Error = -9.2 V.
17-03-17 18:38:10.178 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30467 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30466 (-135.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30464 (-135.2 uncal um), Max = 30470 (-135.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:38:10.178 -07 000000618 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30467, posNoise = 3, negNoise = 3
17-03-17 18:38:10.178 -07 000000618 INF: Z Motor: After move to -0.136040, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:10.178 -07 000000618 INF: Z Motor: Settle wait time = 1741 ms, measure time = 111 ms (allowed 150 ms), total time = 1852 ms
17-03-17 18:38:10.178 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:38:10.218 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2097 ms
17-03-17 18:38:10.218 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:10.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:10.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:10.218 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:10.218 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:10.218 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:10.218 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:10.218 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:10.218 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:10.228 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:38:10.228 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:10.238 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:38:10.238 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:38:10.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:10.288 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:38:10.488 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:38:10.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:38:10.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:10.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:38:10.528 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:38:10.528 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:10.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:38:10.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:38:10.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:10.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:38:10.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:38:10.628 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:10.628 -07 000000618 INF: Autofocus start
17-03-17 18:38:10.628 -07 000000618 INF: MeasureProfile start
17-03-17 18:38:10.638 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:10.638 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 8 ms overall
17-03-17 18:38:10.638 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:10.638 -07 000000618 INF: MeasureProfile done
17-03-17 18:38:10.638 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:38:10.638 -07 000000618 INF: Autofocus finished
17-03-17 18:38:10.838 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:10.838 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:38:10.848 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136049823334166. ----------
17-03-17 18:38:10.848 -07 000000610 INF: Cycle	15	Tile	14	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:10.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28242, sync = True, waitForSettling = True)
17-03-17 18:38:10.848 -07 000000610 INF: Z Motor: Moving to -0.129284 mm, started at -0.136050 mm, distance = 6.77 um
17-03-17 18:38:10.848 -07 000000610 INF: FPGA: Xmit ZDACW 28242\n [Z Motor]
17-03-17 18:38:10.848 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:38:10.858 -07 000000610 INF: FPGA: 'ZDACW 28242' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:38:10.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:10.858 -07 000000480 INF: FPGA: Recv ZDACR 28242
17-03-17 18:38:10.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:10.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:11.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.018 -07 000000618 INF: FPGA: Recv ZSGSRD 29413
17-03-17 18:38:11.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:11.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.028 -07 000000012 INF: FPGA: Recv ZSGSRD 29417
17-03-17 18:38:11.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.038 -07 000000482 INF: FPGA: Recv ZSGSRD 29419
17-03-17 18:38:11.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.048 -07 000000501 INF: FPGA: Recv ZSGSRD 29413
17-03-17 18:38:11.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.058 -07 000000608 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:38:11.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.068 -07 000000476 INF: FPGA: Recv ZSGSRD 29417
17-03-17 18:38:11.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.078 -07 000000618 INF: FPGA: Recv ZSGSRD 29416
17-03-17 18:38:11.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.088 -07 000000618 INF: FPGA: Recv ZSGSRD 29417
17-03-17 18:38:11.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.098 -07 000000448 INF: FPGA: Recv ZSGSRD 29414
17-03-17 18:38:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:11.108 -07 000000608 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:38:11.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:11.118 -07 000000512 INF: FPGA: Recv ZPIEZORD 24938
17-03-17 18:38:11.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:11.128 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -9.8 V.
17-03-17 18:38:11.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29416 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29417 (-128.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29413 (-128.5 uncal um), Max = 29419 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:38:11.128 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29416, posNoise = 3, negNoise = 3
17-03-17 18:38:11.128 -07 000000610 INF: Z Motor: After move to -0.129284, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:11.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:38:11.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:11.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:11.128 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:11.128 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:11.128 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:11.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:11.128 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:11.128 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:11.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:38:11.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:11.128 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:11.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:11.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:38:11.138 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:11.138 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:38:11.138 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:11.148 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:38:11.148 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:38:11.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:38:11.148 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:38:11.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28419 150\n [Camera]
17-03-17 18:38:11.348 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:11.608 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:11.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:11.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:11.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:11.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:11.738 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:11.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1057820720, 0x0, 391868352) start.
17-03-17 18:38:11.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:11.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:11.748 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:11.748 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:11.748 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1093242984, 0x0, 418435064) start.
17-03-17 18:38:11.938 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28419 782
17-03-17 18:38:12.088 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:12.118 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1057820720, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:38:12.118 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:38:12.118 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:12.128 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1093242984, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:38:12.128 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:38:12.128 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:12.128 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:12.128 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:38:12.128 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:38:12.138 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:38:12.268 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.026244,
17-03-17 18:38:12.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:12.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:12.278 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:12.278 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:12.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1128665248, 0x0, 391868352) start.
17-03-17 18:38:12.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:12.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:12.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:12.278 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:12.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:38:12.468 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:38:12.468 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:12.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28419 150' command took 2 ms to send, 1312 ms to get response, and 1318 ms overall
17-03-17 18:38:12.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:38:12.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129297976373175. ------
17-03-17 18:38:12.468 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13595 mm
17-03-17 18:38:12.478 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:38:12.478 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:12.478 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:38:12.478 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:38:12.488 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:12.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1128665248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:38:12.668 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:38:12.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:12.668 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:38:12.668 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:38:12.668 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:12.678 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:12.678 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:38:12.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:38:12.678 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:38:12.718 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:12.718 -07 000000480 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:38:12.718 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 231 ms to get response, and 244 ms overall
17-03-17 18:38:12.718 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29698, sync = True, waitForSettling = False)
17-03-17 18:38:12.718 -07 000000501 INF: Z Motor: Moving to -0.135949 mm, started at -0.129298 mm, distance = -6.65 um
17-03-17 18:38:12.718 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 221 ms to get response, and 238 ms overall
17-03-17 18:38:12.718 -07 000000512 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:12.718 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:38:12.718 -07 000000512 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:38:12.728 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:38:12.738 -07 000000501 INF: FPGA: Xmit ZDACW 29698\n [Z Motor]
17-03-17 18:38:12.738 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:38:12.748 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:12.748 -07 000000501 INF: FPGA: 'ZDACW 29698' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:38:12.768 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:12.768 -07 000000480 INF: FPGA: Recv ZDACR 29698
17-03-17 18:38:12.778 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:38:12.778 -07 000000501 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 18:38:12.928 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:12.928 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 18:38:13.118 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:38:13.118 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 400 ms overall
17-03-17 18:38:13.158 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:13.158 -07 000000501 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:38:13.168 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:38:13.168 -07 000000512 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:13.168 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:38:13.168 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.109 mm/sec
17-03-17 18:38:14.118 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:14.118 -07 000000480 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:38:14.128 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:14.128 -07 000000512 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:14.148 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:14.148 -07 000000512 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:38:14.148 -07 000000512 INF: Y Motor: Moved to 71.5200 after 1668 ms (table move)
17-03-17 18:38:14.148 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135949 mm (DAC = 29698)
17-03-17 18:38:14.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.148 -07 000000501 INF: FPGA: Recv ZSGSRD 30453
17-03-17 18:38:14.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:38:14.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30447
17-03-17 18:38:14.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.168 -07 000000501 INF: FPGA: Recv ZSGSRD 30447
17-03-17 18:38:14.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.178 -07 000000501 INF: FPGA: Recv ZSGSRD 30452
17-03-17 18:38:14.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.188 -07 000000480 INF: FPGA: Recv ZSGSRD 30456
17-03-17 18:38:14.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.198 -07 000000512 INF: FPGA: Recv ZSGSRD 30452
17-03-17 18:38:14.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.208 -07 000000512 INF: FPGA: Recv ZSGSRD 30459
17-03-17 18:38:14.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.218 -07 000000480 INF: FPGA: Recv ZSGSRD 30450
17-03-17 18:38:14.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.228 -07 000000501 INF: FPGA: Recv ZSGSRD 30449
17-03-17 18:38:14.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:14.238 -07 000000482 INF: FPGA: Recv ZSGSRD 30446
17-03-17 18:38:14.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.248 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:14.248 -07 000000593 INF: FPGA: Recv ZPIEZORD 26332
17-03-17 18:38:14.258 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.258 -07 000000012 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -9.1 V.
17-03-17 18:38:14.258 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30451 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30451 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30446 (-135.1 uncal um), Max = 30459 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:38:14.258 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30451, posNoise = 8, negNoise = 5
17-03-17 18:38:14.258 -07 000000012 INF: Z Motor: After move to -0.135949, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:14.258 -07 000000012 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:38:14.258 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:38:14.308 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1832 ms
17-03-17 18:38:14.308 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:14.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:14.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:14.308 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:14.308 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:14.308 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:14.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:14.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:14.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:14.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:14.318 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:14.328 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:38:14.328 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:38:14.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:14.378 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:38:14.578 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:38:14.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:38:14.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:14.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1180962576, 0x0, 559484976) start.
17-03-17 18:38:14.618 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:38:14.618 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:14.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 18:38:14.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1180962576, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:38:14.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:14.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:38:14.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:38:14.718 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:14.718 -07 000000462 INF: Autofocus start
17-03-17 18:38:14.718 -07 000000462 INF: MeasureProfile start
17-03-17 18:38:14.718 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:14.728 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:38:14.728 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:14.728 -07 000000462 INF: MeasureProfile done
17-03-17 18:38:14.728 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:38:14.728 -07 000000462 INF: Autofocus finished
17-03-17 18:38:14.928 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:14.928 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:38:14.928 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.135947035939898. ----------
17-03-17 18:38:14.928 -07 000000610 INF: Cycle	15	Tile	15	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:14.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28193, sync = True, waitForSettling = True)
17-03-17 18:38:14.938 -07 000000610 INF: Z Motor: Moving to -0.129059 mm, started at -0.135947 mm, distance = 6.89 um
17-03-17 18:38:14.938 -07 000000610 INF: FPGA: Xmit ZDACW 28193\n [Z Motor]
17-03-17 18:38:14.938 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:38:14.948 -07 000000610 INF: FPGA: 'ZDACW 28193' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:38:14.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:14.948 -07 000000462 INF: FPGA: Recv ZDACR 28193
17-03-17 18:38:14.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:14.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29371
17-03-17 18:38:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29380
17-03-17 18:38:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.128 -07 000000462 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:38:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29376
17-03-17 18:38:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.148 -07 000000623 INF: FPGA: Recv ZSGSRD 29379
17-03-17 18:38:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.158 -07 000000501 INF: FPGA: Recv ZSGSRD 29383
17-03-17 18:38:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.168 -07 000000462 INF: FPGA: Recv ZSGSRD 29380
17-03-17 18:38:15.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29378
17-03-17 18:38:15.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29382
17-03-17 18:38:15.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:15.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29383
17-03-17 18:38:15.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:15.208 -07 000000482 INF: FPGA: Recv ZPIEZORD 24931
17-03-17 18:38:15.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:15.218 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -9.8 V.
17-03-17 18:38:15.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29380 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29380 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29371 (-128.2 uncal um), Max = 29385 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:38:15.218 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29380, posNoise = 5, negNoise = 9
17-03-17 18:38:15.218 -07 000000610 INF: Z Motor: After move to -0.129059, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:15.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:38:15.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:15.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:15.218 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:15.218 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:15.218 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:15.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:15.218 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:15.218 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:15.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:38:15.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:15.218 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:38:15.218 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:15.228 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:38:15.228 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:15.228 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:38:15.228 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:15.238 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:38:15.238 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:38:15.238 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:38:15.238 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:38:15.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28370 150\n [Camera]
17-03-17 18:38:15.438 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:15.838 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:15.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:15.838 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:15.838 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:15.838 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-17 18:38:15.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:15.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:15.838 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:15.838 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:15.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-17 18:38:16.028 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28370 779
17-03-17 18:38:16.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:16.218 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:38:16.218 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:38:16.218 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:16.218 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:16.218 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:38:16.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:38:16.218 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:38:16.218 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:16.228 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:38:16.238 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:38:16.368 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:16.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:16.368 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:16.368 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:16.368 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:38:16.368 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:16.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:16.368 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:16.368 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:16.368 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:38:16.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:38:16.558 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:16.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28370 150' command took 2 ms to send, 1314 ms to get response, and 1317 ms overall
17-03-17 18:38:16.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:38:16.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129066704736072. ------
17-03-17 18:38:16.558 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:16.558 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13510 mm
17-03-17 18:38:16.558 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:38:16.568 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:16.568 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:38:16.568 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:38:16.568 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:38:16.568 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:16.568 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29512, sync = True, waitForSettling = False)
17-03-17 18:38:16.568 -07 000000623 INF: Z Motor: Moving to -0.135097 mm, started at -0.129067 mm, distance = -6.03 um
17-03-17 18:38:16.568 -07 000000501 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:38:16.578 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:38:16.578 -07 000000618 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:16.578 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:38:16.578 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:38:16.578 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:38:16.588 -07 000000623 INF: FPGA: Xmit ZDACW 29512\n [Z Motor]
17-03-17 18:38:16.588 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:38:16.598 -07 000000623 INF: FPGA: 'ZDACW 29512' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:38:16.598 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:16.608 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:16.608 -07 000000415 INF: FPGA: Recv ZDACR 29512
17-03-17 18:38:16.608 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:16.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:16.618 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:38:16.618 -07 000000623 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 18:38:16.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:38:16.758 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:38:16.758 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:16.758 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:16.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:38:16.768 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:38:16.768 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:16.768 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:38:16.768 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:38:16.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:38:16.798 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:16.808 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 220 ms to get response, and 237 ms overall
17-03-17 18:38:16.968 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:38:16.968 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 18:38:17.008 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:17.008 -07 000000593 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:38:17.018 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:38:17.018 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:17.018 -07 000000618 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:38:17.018 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 18:38:17.638 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.0344,
17-03-17 18:38:17.968 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:17.968 -07 000000012 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:38:17.978 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:17.978 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:17.998 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:17.998 -07 000000618 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:38:17.998 -07 000000618 INF: Y Motor: Moved to 72.3501 after 1435 ms (table move)
17-03-17 18:38:18.008 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135097 mm (DAC = 29512)
17-03-17 18:38:18.008 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.008 -07 000000012 INF: FPGA: Recv ZSGSRD 30319
17-03-17 18:38:18.018 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:38:18.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.018 -07 000000618 INF: FPGA: Recv ZSGSRD 30318
17-03-17 18:38:18.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.028 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.028 -07 000000593 INF: FPGA: Recv ZSGSRD 30318
17-03-17 18:38:18.038 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.038 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.038 -07 000000012 INF: FPGA: Recv ZSGSRD 30316
17-03-17 18:38:18.048 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.048 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.048 -07 000000593 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:38:18.058 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.058 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.058 -07 000000593 INF: FPGA: Recv ZSGSRD 30318
17-03-17 18:38:18.068 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.068 -07 000000593 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:38:18.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.078 -07 000000593 INF: FPGA: Recv ZSGSRD 30319
17-03-17 18:38:18.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.088 -07 000000482 INF: FPGA: Recv ZSGSRD 30315
17-03-17 18:38:18.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.098 -07 000000593 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:38:18.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.118 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:18.118 -07 000000618 INF: FPGA: Recv ZPIEZORD 26190
17-03-17 18:38:18.128 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:38:18.128 -07 000000438 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.503 V. Piezo Error = -9.1 V.
17-03-17 18:38:18.128 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30319 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30318 (-134.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30315 (-134.3 uncal um), Max = 30323 (-134.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:38:18.128 -07 000000438 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30319, posNoise = 4, negNoise = 4
17-03-17 18:38:18.128 -07 000000438 INF: Z Motor: After move to -0.135097, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:18.128 -07 000000438 INF: Z Motor: Settle wait time = 1442 ms, measure time = 115 ms (allowed 150 ms), total time = 1557 ms
17-03-17 18:38:18.128 -07 000000438 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 18:38:18.168 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:38:18.168 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:18.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:18.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:18.168 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:18.168 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:18.168 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:18.168 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:18.168 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:38:18.168 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:18.178 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:18.178 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:18.178 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:38:18.178 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:38:18.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:18.228 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:38:18.428 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:38:18.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:38:18.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:18.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-17 18:38:18.468 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:38:18.468 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:18.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:38:18.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:38:18.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:18.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:38:18.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:38:18.568 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:18.568 -07 000000608 INF: Autofocus start
17-03-17 18:38:18.568 -07 000000608 INF: MeasureProfile start
17-03-17 18:38:18.578 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:18.578 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:38:18.578 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:18.588 -07 000000608 INF: MeasureProfile done
17-03-17 18:38:18.588 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:38:18.588 -07 000000608 INF: Autofocus finished
17-03-17 18:38:18.778 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:18.778 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:38:18.788 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135099039937185. ----------
17-03-17 18:38:18.788 -07 000000610 INF: Cycle	15	Tile	16	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:18.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28020, sync = True, waitForSettling = True)
17-03-17 18:38:18.798 -07 000000610 INF: Z Motor: Moving to -0.128267 mm, started at -0.135099 mm, distance = 6.83 um
17-03-17 18:38:18.798 -07 000000610 INF: FPGA: Xmit ZDACW 28020\n [Z Motor]
17-03-17 18:38:18.798 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:38:18.808 -07 000000610 INF: FPGA: 'ZDACW 28020' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:18.808 -07 000000448 INF: FPGA: Recv ZDACR 28020
17-03-17 18:38:18.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:18.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.968 -07 000000448 INF: FPGA: Recv ZSGSRD 29256
17-03-17 18:38:18.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:18.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.978 -07 000000448 INF: FPGA: Recv ZSGSRD 29252
17-03-17 18:38:18.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.988 -07 000000618 INF: FPGA: Recv ZSGSRD 29257
17-03-17 18:38:18.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:18.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:18.998 -07 000000618 INF: FPGA: Recv ZSGSRD 29256
17-03-17 18:38:19.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:19.008 -07 000000618 INF: FPGA: Recv ZSGSRD 29259
17-03-17 18:38:19.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:19.018 -07 000000476 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:38:19.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:19.028 -07 000000618 INF: FPGA: Recv ZSGSRD 29254
17-03-17 18:38:19.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:19.038 -07 000000593 INF: FPGA: Recv ZSGSRD 29261
17-03-17 18:38:19.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:19.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29251
17-03-17 18:38:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:19.058 -07 000000593 INF: FPGA: Recv ZSGSRD 29254
17-03-17 18:38:19.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:19.068 -07 000000608 INF: FPGA: Recv ZPIEZORD 24786
17-03-17 18:38:19.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:19.078 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.8 V.
17-03-17 18:38:19.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29255 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29255 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29251 (-127.5 uncal um), Max = 29261 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:38:19.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29255, posNoise = 6, negNoise = 4
17-03-17 18:38:19.078 -07 000000610 INF: Z Motor: After move to -0.128267, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:19.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:38:19.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:19.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:19.078 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:19.078 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:19.078 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:19.078 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:19.078 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:19.078 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:19.078 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:19.078 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:19.078 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:38:19.078 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:19.088 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:19.088 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:19.088 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:38:19.088 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:19.088 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:38:19.088 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:38:19.098 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:38:19.098 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:38:19.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28196 150\n [Camera]
17-03-17 18:38:19.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:19.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:19.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:19.688 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:19.688 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:19.688 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) start.
17-03-17 18:38:19.698 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:19.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:19.698 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:19.698 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:19.698 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:38:19.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28196 779
17-03-17 18:38:20.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:20.088 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:38:20.088 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:38:20.088 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:20.088 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:38:20.088 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:38:20.088 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:20.088 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:20.088 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:38:20.098 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:20.098 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:38:20.228 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:20.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:20.228 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:20.228 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:20.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:38:20.228 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:20.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:20.228 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:20.228 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:20.228 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:38:20.418 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:38:20.418 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:20.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28196 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-17 18:38:20.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:38:20.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128263678218352. ------
17-03-17 18:38:20.418 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:20.418 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13486 mm
17-03-17 18:38:20.418 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:38:20.428 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:20.428 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:38:20.428 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:38:20.428 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:38:20.428 -07 000000593 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:38:20.428 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29460, sync = True, waitForSettling = False)
17-03-17 18:38:20.428 -07 000000012 INF: Z Motor: Moving to -0.134859 mm, started at -0.128264 mm, distance = -6.60 um
17-03-17 18:38:20.438 -07 000000012 INF: FPGA: Xmit ZDACW 29460\n [Z Motor]
17-03-17 18:38:20.438 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:38:20.448 -07 000000012 INF: FPGA: 'ZDACW 29460' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:38:20.448 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:20.448 -07 000000476 INF: FPGA: Recv YRDPOS 148174
17-03-17 18:38:20.458 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:38:20.458 -07 000000593 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:20.458 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:20.458 -07 000000593 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:38:20.458 -07 000000593 INF: Y Motor: Moving 1347 steps-26
17-03-17 18:38:20.468 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:20.628 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:38:20.628 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:38:20.628 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:20.628 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:38:20.628 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:38:20.628 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:20.628 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:20.628 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:38:20.638 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:38:20.638 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:38:20.678 -07 000000512 INF: FPGA: Recv ZDACR 29460
17-03-17 18:38:20.678 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:20.678 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 248 ms to get response, and 256 ms overall
17-03-17 18:38:20.678 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 218 ms to get response, and 238 ms overall
17-03-17 18:38:20.678 -07 000000012 INF: Z Motor: MoveAbsStepped took 254 ms (did NOT wait for settling yet))
17-03-17 18:38:20.838 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:38:20.838 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:38:20.878 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:20.878 -07 000000438 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:38:20.888 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:38:20.888 -07 000000593 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:20.888 -07 000000593 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:38:20.888 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.194 mm/sec
17-03-17 18:38:21.608 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:21.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:21.838 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:21.838 -07 000000438 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:38:21.848 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:21.848 -07 000000593 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:21.868 -07 000000593 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:21.868 -07 000000593 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:38:21.868 -07 000000593 INF: Y Motor: Moved to 73.1768 after 1437 ms (table move)
17-03-17 18:38:21.868 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134859 mm (DAC = 29460)
17-03-17 18:38:21.868 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30289
17-03-17 18:38:21.878 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:38:21.878 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.878 -07 000000593 INF: FPGA: Recv ZSGSRD 30292
17-03-17 18:38:21.888 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.888 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30281
17-03-17 18:38:21.898 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.898 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.898 -07 000000593 INF: FPGA: Recv ZSGSRD 30279
17-03-17 18:38:21.908 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.908 -07 000000012 INF: FPGA: Recv ZSGSRD 30283
17-03-17 18:38:21.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.918 -07 000000593 INF: FPGA: Recv ZSGSRD 30273
17-03-17 18:38:21.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.928 -07 000000012 INF: FPGA: Recv ZSGSRD 30285
17-03-17 18:38:21.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.938 -07 000000593 INF: FPGA: Recv ZSGSRD 30284
17-03-17 18:38:21.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.948 -07 000000012 INF: FPGA: Recv ZSGSRD 30285
17-03-17 18:38:21.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:21.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30279
17-03-17 18:38:21.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.968 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:21.968 -07 000000593 INF: FPGA: Recv ZPIEZORD 26142
17-03-17 18:38:21.978 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:21.978 -07 000000618 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -9.1 V.
17-03-17 18:38:21.978 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30283 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30284 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30273 (-134.0 uncal um), Max = 30292 (-134.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:38:21.978 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30283, posNoise = 9, negNoise = 10
17-03-17 18:38:21.978 -07 000000618 INF: Z Motor: After move to -0.134859, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:21.978 -07 000000618 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:38:21.978 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:38:22.028 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:38:22.028 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:22.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:22.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:22.028 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:22.028 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:22.028 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:22.028 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:22.028 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:22.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:22.038 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:38:22.038 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:22.048 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:38:22.048 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:38:22.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:22.098 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:38:22.298 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:38:22.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:38:22.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:22.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-17 18:38:22.338 -07 000000512 INF: FPGA: Recv @CAMSNAP 283
17-03-17 18:38:22.338 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:22.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 18:38:22.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:38:22.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:22.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:38:22.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:38:22.438 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:22.438 -07 000000512 INF: Autofocus start
17-03-17 18:38:22.438 -07 000000512 INF: MeasureProfile start
17-03-17 18:38:22.438 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:22.448 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:38:22.448 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:22.448 -07 000000512 INF: MeasureProfile done
17-03-17 18:38:22.448 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:38:22.448 -07 000000512 INF: Autofocus finished
17-03-17 18:38:22.648 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:22.648 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:38:22.658 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134867768300082. ----------
17-03-17 18:38:22.658 -07 000000610 INF: Cycle	15	Tile	17	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:22.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27984, sync = True, waitForSettling = True)
17-03-17 18:38:22.658 -07 000000610 INF: Z Motor: Moving to -0.128103 mm, started at -0.134868 mm, distance = 6.77 um
17-03-17 18:38:22.658 -07 000000610 INF: FPGA: Xmit ZDACW 27984\n [Z Motor]
17-03-17 18:38:22.658 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:38:22.668 -07 000000610 INF: FPGA: 'ZDACW 27984' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:38:22.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:22.668 -07 000000438 INF: FPGA: Recv ZDACR 27984
17-03-17 18:38:22.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:22.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.828 -07 000000438 INF: FPGA: Recv ZSGSRD 29234
17-03-17 18:38:22.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:22.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.838 -07 000000593 INF: FPGA: Recv ZSGSRD 29237
17-03-17 18:38:22.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.848 -07 000000618 INF: FPGA: Recv ZSGSRD 29236
17-03-17 18:38:22.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.858 -07 000000012 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:38:22.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.868 -07 000000512 INF: FPGA: Recv ZSGSRD 29226
17-03-17 18:38:22.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.878 -07 000000618 INF: FPGA: Recv ZSGSRD 29236
17-03-17 18:38:22.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.888 -07 000000438 INF: FPGA: Recv ZSGSRD 29225
17-03-17 18:38:22.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.898 -07 000000512 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:38:22.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.908 -07 000000618 INF: FPGA: Recv ZSGSRD 29233
17-03-17 18:38:22.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:22.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29238
17-03-17 18:38:22.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:22.928 -07 000000012 INF: FPGA: Recv ZPIEZORD 24817
17-03-17 18:38:22.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:22.938 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.7 V.
17-03-17 18:38:22.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29232 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29234 (-127.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29225 (-127.3 uncal um), Max = 29238 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:38:22.938 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29232, posNoise = 6, negNoise = 7
17-03-17 18:38:22.938 -07 000000610 INF: Z Motor: After move to -0.128103, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:22.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:38:22.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:22.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:22.938 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:22.938 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:22.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:22.938 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:22.938 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:22.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:22.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:38:22.938 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:22.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:38:22.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:22.948 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:38:22.948 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:22.948 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:38:22.948 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:22.948 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:38:22.948 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:38:22.958 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:38:22.958 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:38:22.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28160 150\n [Camera]
17-03-17 18:38:22.998 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 4.016692,
17-03-17 18:38:23.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:23.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:23.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:23.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:23.548 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:23.548 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:38:23.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:23.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:23.558 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:23.558 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:23.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:38:23.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28160 779
17-03-17 18:38:23.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:23.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:38:23.938 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:38:23.938 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:23.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:38:23.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:38:23.938 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:23.948 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:38:23.948 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:23.948 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:38:23.948 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:38:24.078 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:24.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:24.088 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:24.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:24.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:24.218 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:24.218 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:24.218 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:38:24.228 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:24.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:38:24.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:38:24.278 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:24.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28160 150' command took 4 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-17 18:38:24.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:38:24.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128115921339091. ------
17-03-17 18:38:24.278 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:24.278 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13454 mm
17-03-17 18:38:24.278 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:38:24.278 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:38:24.278 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:38:24.278 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29391, sync = True, waitForSettling = False)
17-03-17 18:38:24.278 -07 000000618 INF: Z Motor: Moving to -0.134543 mm, started at -0.128116 mm, distance = -6.43 um
17-03-17 18:38:24.278 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:24.288 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:38:24.288 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:24.298 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:38:24.308 -07 000000618 INF: FPGA: Xmit ZDACW 29391\n [Z Motor]
17-03-17 18:38:24.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:38:24.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:38:24.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:24.618 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:38:24.618 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:38:24.618 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:24.618 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:24.618 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:24.618 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 18:38:24.628 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:38:24.678 -07 000000501 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:38:24.678 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:38:24.678 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:24.678 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 382 ms to get response, and 393 ms overall
17-03-17 18:38:24.678 -07 000000424 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:24.678 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:38:24.678 -07 000000424 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:38:24.678 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:24.678 -07 000000618 INF: FPGA: 'ZDACW 29391' command took 0 ms to send, 362 ms to get response, and 392 ms overall
17-03-17 18:38:24.678 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 372 ms to get response, and 391 ms overall
17-03-17 18:38:24.688 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:24.688 -07 000000501 INF: FPGA: Recv ZDACR 29391
17-03-17 18:38:24.698 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:38:24.698 -07 000000618 INF: Z Motor: MoveAbsStepped took 410 ms (did NOT wait for settling yet))
17-03-17 18:38:25.058 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:38:25.058 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 18:38:25.078 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:25.088 -07 000000501 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:38:25.088 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:38:25.088 -07 000000424 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:25.088 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:38:25.088 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.238 mm/sec
17-03-17 18:38:26.038 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:26.038 -07 000000501 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:38:26.048 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:26.048 -07 000000424 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:26.058 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:26.058 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:38:26.058 -07 000000424 INF: Y Motor: Moved to 74.0088 after 1776 ms (table move)
17-03-17 18:38:26.058 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134543 mm (DAC = 29391)
17-03-17 18:38:26.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.068 -07 000000618 INF: FPGA: Recv ZSGSRD 30239
17-03-17 18:38:26.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 18:38:26.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.068 -07 000000424 INF: FPGA: Recv ZSGSRD 30234
17-03-17 18:38:26.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:38:26.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.078 -07 000000618 INF: FPGA: Recv ZSGSRD 30232
17-03-17 18:38:26.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.088 -07 000000424 INF: FPGA: Recv ZSGSRD 30234
17-03-17 18:38:26.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.098 -07 000000501 INF: FPGA: Recv ZSGSRD 30236
17-03-17 18:38:26.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.108 -07 000000415 INF: FPGA: Recv ZSGSRD 30234
17-03-17 18:38:26.118 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.118 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.118 -07 000000501 INF: FPGA: Recv ZSGSRD 30234
17-03-17 18:38:26.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.128 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30228
17-03-17 18:38:26.138 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.138 -07 000000415 INF: FPGA: Recv ZSGSRD 30237
17-03-17 18:38:26.148 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.148 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:26.148 -07 000000501 INF: FPGA: Recv ZSGSRD 30233
17-03-17 18:38:26.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.158 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:26.158 -07 000000501 INF: FPGA: Recv ZPIEZORD 26114
17-03-17 18:38:26.168 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.168 -07 000000480 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.485 V. Piezo Error = -9.1 V.
17-03-17 18:38:26.168 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30234 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30234 (-133.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30228 (-133.7 uncal um), Max = 30239 (-133.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:38:26.168 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30234, posNoise = 5, negNoise = 6
17-03-17 18:38:26.168 -07 000000480 INF: Z Motor: After move to -0.134543, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:26.168 -07 000000480 INF: Z Motor: Settle wait time = 1779 ms, measure time = 102 ms (allowed 150 ms), total time = 1881 ms
17-03-17 18:38:26.168 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:38:26.218 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1933 ms
17-03-17 18:38:26.218 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:26.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:26.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:26.218 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:26.218 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:26.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:26.218 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:26.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:38:26.218 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:26.228 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:26.228 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:26.238 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:38:26.238 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:38:26.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:26.288 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:38:26.478 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:38:26.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:38:26.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:26.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 18:38:26.518 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:38:26.518 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:26.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:38:26.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:38:26.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:26.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:38:26.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:38:26.608 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:26.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:26.628 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:26.628 -07 000000415 INF: Autofocus start
17-03-17 18:38:26.628 -07 000000415 INF: MeasureProfile start
17-03-17 18:38:26.628 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:26.638 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:38:26.638 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:26.648 -07 000000415 INF: MeasureProfile done
17-03-17 18:38:26.648 -07 000000415 INF: X=4  Z correction [um]=-0.004706759
17-03-17 18:38:26.648 -07 000000415 INF: Autofocus finished
17-03-17 18:38:26.838 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:26.838 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:38:26.848 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134552981905136. ----------
17-03-17 18:38:26.848 -07 000000610 INF: Cycle	15	Tile	18	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:26.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27903, sync = True, waitForSettling = True)
17-03-17 18:38:26.848 -07 000000610 INF: Z Motor: Moving to -0.127732 mm, started at -0.134553 mm, distance = 6.82 um
17-03-17 18:38:26.848 -07 000000610 INF: FPGA: Xmit ZDACW 27903\n [Z Motor]
17-03-17 18:38:26.848 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:38:26.858 -07 000000610 INF: FPGA: 'ZDACW 27903' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:38:26.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:26.858 -07 000000415 INF: FPGA: Recv ZDACR 27903
17-03-17 18:38:26.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:26.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:27.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.018 -07 000000424 INF: FPGA: Recv ZSGSRD 29168
17-03-17 18:38:27.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:27.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.028 -07 000000415 INF: FPGA: Recv ZSGSRD 29168
17-03-17 18:38:27.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.038 -07 000000424 INF: FPGA: Recv ZSGSRD 29171
17-03-17 18:38:27.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.048 -07 000000478 INF: FPGA: Recv ZSGSRD 29176
17-03-17 18:38:27.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.058 -07 000000424 INF: FPGA: Recv ZSGSRD 29169
17-03-17 18:38:27.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.068 -07 000000478 INF: FPGA: Recv ZSGSRD 29176
17-03-17 18:38:27.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.078 -07 000000424 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:38:27.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.088 -07 000000478 INF: FPGA: Recv ZSGSRD 29176
17-03-17 18:38:27.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.098 -07 000000424 INF: FPGA: Recv ZSGSRD 29174
17-03-17 18:38:27.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:27.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29165
17-03-17 18:38:27.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:27.118 -07 000000415 INF: FPGA: Recv ZPIEZORD 24740
17-03-17 18:38:27.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:27.128 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.7 V.
17-03-17 18:38:27.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29171 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29170 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29165 (-126.9 uncal um), Max = 29176 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:38:27.128 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29171, posNoise = 5, negNoise = 6
17-03-17 18:38:27.128 -07 000000610 INF: Z Motor: After move to -0.127732, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:27.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:38:27.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:27.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:27.128 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:27.128 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:27.128 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:27.128 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:27.128 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:27.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:27.128 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:38:27.128 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:27.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:38:27.128 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:27.138 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:27.138 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:27.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:38:27.138 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:27.138 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:38:27.138 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:38:27.148 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:38:27.148 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:38:27.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28080 150\n [Camera]
17-03-17 18:38:27.348 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:27.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:27.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:27.748 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:27.748 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:27.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:27.748 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:27.748 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:27.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) start.
17-03-17 18:38:27.758 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:27.758 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:38:27.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28080 779
17-03-17 18:38:28.088 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:28.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:38:28.138 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:38:28.138 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:28.248 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 494 ms.
17-03-17 18:38:28.248 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-17 18:38:28.248 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:28.258 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-17 18:38:28.258 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 18:38:28.258 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:38:28.268 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 18:38:28.278 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:28.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:28.278 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:28.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:28.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:28.278 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:28.278 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:28.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:38:28.278 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:28.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:38:28.378 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.977204,
17-03-17 18:38:28.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:38:28.468 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:28.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28080 150' command took 2 ms to send, 1312 ms to get response, and 1318 ms overall
17-03-17 18:38:28.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:38:28.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127724044398444. ------
17-03-17 18:38:28.468 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:28.468 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13405 mm
17-03-17 18:38:28.468 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:38:28.478 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:28.478 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:38:28.478 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:38:28.478 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29283, sync = True, waitForSettling = False)
17-03-17 18:38:28.478 -07 000000478 INF: Z Motor: Moving to -0.134049 mm, started at -0.127724 mm, distance = -6.32 um
17-03-17 18:38:28.478 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:38:28.478 -07 000000476 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:38:28.488 -07 000000478 INF: FPGA: Xmit ZDACW 29283\n [Z Motor]
17-03-17 18:38:28.488 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:38:28.498 -07 000000478 INF: FPGA: 'ZDACW 29283' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:38:28.498 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:28.498 -07 000000480 INF: FPGA: Recv YRDPOS 151571
17-03-17 18:38:28.508 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:38:28.508 -07 000000476 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:28.508 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:28.508 -07 000000424 INF: FPGA: Recv ZDACR 29283
17-03-17 18:38:28.508 -07 000000476 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:38:28.508 -07 000000476 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:38:28.518 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:38:28.518 -07 000000478 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:38:28.518 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:38:28.668 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:38:28.668 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:38:28.668 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:28.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:38:28.668 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:38:28.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:28.668 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:28.678 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:38:28.678 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:28.678 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:38:28.688 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:38:28.688 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 208 ms to get response, and 213 ms overall
17-03-17 18:38:28.898 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:38:28.898 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 387 ms overall
17-03-17 18:38:28.928 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:28.928 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:38:28.938 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:38:28.938 -07 000000476 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:28.938 -07 000000476 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:38:28.938 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-17 18:38:29.888 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:29.888 -07 000000618 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:38:29.898 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:29.898 -07 000000476 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:29.908 -07 000000476 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:29.908 -07 000000476 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:38:29.908 -07 000000476 INF: Y Motor: Moved to 74.8325 after 1430 ms (table move)
17-03-17 18:38:29.908 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134049 mm (DAC = 29283)
17-03-17 18:38:29.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.918 -07 000000618 INF: FPGA: Recv ZSGSRD 30161
17-03-17 18:38:29.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:29.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.928 -07 000000618 INF: FPGA: Recv ZSGSRD 30158
17-03-17 18:38:29.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:29.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.938 -07 000000618 INF: FPGA: Recv ZSGSRD 30153
17-03-17 18:38:29.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:29.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.948 -07 000000618 INF: FPGA: Recv ZSGSRD 30161
17-03-17 18:38:29.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:29.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.958 -07 000000476 INF: FPGA: Recv ZSGSRD 30149
17-03-17 18:38:29.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:29.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.968 -07 000000618 INF: FPGA: Recv ZSGSRD 30152
17-03-17 18:38:29.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:29.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.978 -07 000000012 INF: FPGA: Recv ZSGSRD 30157
17-03-17 18:38:29.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:29.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.988 -07 000000618 INF: FPGA: Recv ZSGSRD 30157
17-03-17 18:38:29.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:29.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:29.998 -07 000000618 INF: FPGA: Recv ZSGSRD 30169
17-03-17 18:38:30.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.008 -07 000000618 INF: FPGA: Recv ZSGSRD 30159
17-03-17 18:38:30.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.018 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:30.018 -07 000000501 INF: FPGA: Recv ZPIEZORD 26054
17-03-17 18:38:30.028 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.028 -07 000000431 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -9.0 V.
17-03-17 18:38:30.028 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30158 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30158 (-133.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30149 (-133.2 uncal um), Max = 30169 (-133.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:38:30.028 -07 000000431 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30158, posNoise = 11, negNoise = 9
17-03-17 18:38:30.028 -07 000000431 INF: Z Motor: After move to -0.134049, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:30.028 -07 000000431 INF: Z Motor: Settle wait time = 1434 ms, measure time = 112 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:38:30.028 -07 000000431 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 18:38:30.068 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:38:30.068 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:38:30.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:30.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:30.068 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:38:30.068 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:30.068 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:30.068 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:30.068 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:38:30.068 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:30.078 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:30.078 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:38:30.078 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:38:30.078 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:38:30.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:38:30.128 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:38:30.328 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:38:30.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:38:30.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:38:30.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 18:38:30.368 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:38:30.368 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:38:30.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:38:30.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:38:30.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:30.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:38:30.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:38:30.468 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:38:30.468 -07 000000501 INF: Autofocus start
17-03-17 18:38:30.468 -07 000000501 INF: MeasureProfile start
17-03-17 18:38:30.468 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:38:30.478 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:38:30.478 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:38:30.478 -07 000000501 INF: MeasureProfile done
17-03-17 18:38:30.478 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:38:30.478 -07 000000501 INF: Autofocus finished
17-03-17 18:38:30.678 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:38:30.678 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:38:30.678 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134064741782362. ----------
17-03-17 18:38:30.688 -07 000000610 INF: Cycle	15	Tile	19	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:38:30.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27824, sync = True, waitForSettling = True)
17-03-17 18:38:30.688 -07 000000610 INF: Z Motor: Moving to -0.127370 mm, started at -0.134065 mm, distance = 6.69 um
17-03-17 18:38:30.688 -07 000000610 INF: FPGA: Xmit ZDACW 27824\n [Z Motor]
17-03-17 18:38:30.688 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:38:30.698 -07 000000610 INF: FPGA: 'ZDACW 27824' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:38:30.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:38:30.698 -07 000000476 INF: FPGA: Recv ZDACR 27824
17-03-17 18:38:30.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:38:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.858 -07 000000593 INF: FPGA: Recv ZSGSRD 29113
17-03-17 18:38:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.868 -07 000000501 INF: FPGA: Recv ZSGSRD 29122
17-03-17 18:38:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.878 -07 000000012 INF: FPGA: Recv ZSGSRD 29122
17-03-17 18:38:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.888 -07 000000501 INF: FPGA: Recv ZSGSRD 29116
17-03-17 18:38:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.898 -07 000000012 INF: FPGA: Recv ZSGSRD 29118
17-03-17 18:38:30.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.908 -07 000000501 INF: FPGA: Recv ZSGSRD 29115
17-03-17 18:38:30.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.918 -07 000000012 INF: FPGA: Recv ZSGSRD 29123
17-03-17 18:38:30.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.928 -07 000000593 INF: FPGA: Recv ZSGSRD 29118
17-03-17 18:38:30.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.938 -07 000000012 INF: FPGA: Recv ZSGSRD 29107
17-03-17 18:38:30.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:38:30.948 -07 000000431 INF: FPGA: Recv ZSGSRD 29120
17-03-17 18:38:30.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:38:30.958 -07 000000501 INF: FPGA: Recv ZPIEZORD 24708
17-03-17 18:38:30.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:30.968 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -9.7 V.
17-03-17 18:38:30.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29117 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29118 (-126.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29107 (-126.5 uncal um), Max = 29123 (-126.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:38:30.968 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29117, posNoise = 6, negNoise = 10
17-03-17 18:38:30.968 -07 000000610 INF: Z Motor: After move to -0.127370, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:38:30.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:38:30.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:38:30.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:38:30.968 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:38:30.968 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:38:30.968 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:38:30.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:38:30.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:38:30.968 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:38:30.968 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:38:30.968 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:38:30.968 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:38:30.968 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:38:30.978 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:38:30.978 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:38:30.978 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:38:30.978 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:38:30.988 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:38:30.988 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:38:30.988 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:38:30.988 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:38:30.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28001 150\n [Camera]
17-03-17 18:38:31.188 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:38:31.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:38:31.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:38:31.578 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:31.578 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:31.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:38:31.588 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:38:31.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:38:31.588 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:31.588 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:31.588 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 18:38:31.608 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:31.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 14. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:31.778 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28001 779
17-03-17 18:38:31.928 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:38:31.968 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:38:31.978 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:38:31.978 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:31.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:38:31.978 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:38:31.978 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:31.978 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:38:31.978 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:38:31.978 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:38:31.998 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:38:32.108 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:38:32.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:38:32.118 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:38:32.118 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:38:32.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 18:38:32.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:38:32.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:38:32.118 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:38:32.118 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:38:32.118 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2505849160, 0x0, 418435064) start.
17-03-17 18:38:32.308 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:38:32.308 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:38:32.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28001 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:38:32.498 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2505849160, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:38:32.498 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:38:32.498 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:32.498 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:38:32.498 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:38:32.498 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:38:32.498 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:38:32.508 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:38:32.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:38:32.508 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:38:32.508 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:38:32.548 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:38:32.548 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:38:32.588 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:38:32.608 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 18:38:32.608 -07 000000610 INF: Imaging Cycle 15: ScanTilesCommand Cycle 15 time end. Duration was 158344 ms.
17-03-17 18:38:32.608 -07 000000610 INF: =================== Cycle #15 ===================
17-03-17 18:38:32.608 -07 000000610 INF: ===================  ===================
17-03-17 18:38:32.608 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:38:32.618 -07 000000431 INF: FPGA: Recv EXLED1ADCR 29
17-03-17 18:38:32.618 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:38:32.618 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 29 --> 0.0 mW (old method), or 2.2 mW (new method). Difference = 2.2 mW
17-03-17 18:38:32.618 -07 000000438 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 15, FrontChillerTemperature: 3.977204, FrontChillerHeatSinkTemperature: 0.101201, AmbientTemperature: 18.73237, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.49025, GreenLEDSensorTemperature: 26.2095, PhotodiodePowerAdcGreen: 29, PhotodiodePowerMwGreen: 2.200606
17-03-17 18:38:32.628 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.