17-03-17 18:38:32.688 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:38:32.688 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:38:32.688 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 18:38:32.688 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:32.688 -07 000000424 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:38:32.698 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:38:32.698 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:32.698 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:38:32.698 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:38:32.698 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:38:32.818 -07 000000012 INF: FPGA: Recv YMVTO 154379 877
17-03-17 18:38:32.818 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 118 ms overall
17-03-17 18:38:32.818 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-17 18:38:32.818 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 877 steps (0.548 mm). Slippage = 0.001 mm (0.00%).
17-03-17 18:38:32.818 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.548 mm, average velocity = 4.645 mm/sec
17-03-17 18:38:33.738 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.98264,
17-03-17 18:38:35.818 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:38:35.818 -07 000000012 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:38:35.828 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:38:35.828 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:38:35.838 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:38:35.838 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-17 18:38:35.838 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3151 ms
17-03-17 18:38:35.848 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 60° ===================
17-03-17 18:38:35.848 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:38:35.848 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:38:35.848 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:38:35.858 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:38:35.858 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:38:35.858 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-17 18:38:35.868 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:38:35.868 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 60° ===================
17-03-17 18:38:35.868 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:38:35.868 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:38:35.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:38:35.898 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:38:35.898 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:38:35.898 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:38:36.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:38:36.218 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:38:36.218 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:38:36.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:38:36.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:38:36.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:38:36.388 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:38:36.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:38:36.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:36.418 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:38:36.418 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:38:36.418 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:38:36.548 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:38:36.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:36.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:36.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=146, R2=153, Total=299. Warn if over 250 bubbles per interval.
17-03-17 18:38:39.098 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.966297,
17-03-17 18:38:39.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:39.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:40.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:40.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:40.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:40.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:40.648 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:38:40.648 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:38:40.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:40.808 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:38:40.808 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:38:40.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:40.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:38:40.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:38:40.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:38:41.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:38:41.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:41.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:41.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:41.588 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:38:41.588 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:38:41.608 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 18:38:41.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=148, R2=154, Total=302. Warn if over 250 bubbles per interval.
17-03-17 18:38:42.808 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:38:42.808 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:38:42.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:38:42.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:38:42.828 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:38:42.828 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:38:42.958 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:38:42.978 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:38:42.978 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:38:43.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:38:43.048 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:38:43.048 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:38:43.148 -07 000000610 INF: =================== Cycle #16, Pumping Reagent CMS (4) ===================
17-03-17 18:38:43.148 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:38:43.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:43.178 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:38:43.178 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:38:43.178 -07 000000610 INF: =================== Cycle #16, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:38:43.308 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:38:43.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:44.458 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.948561,
17-03-17 18:38:44.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:44.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:45.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:45.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:45.268 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:38:45.268 -07 000000610 INF: =================== Cycle #16, Pumping Reagent CMS (4) ===================
17-03-17 18:38:45.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:45.428 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:38:45.428 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:38:45.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:45.588 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:38:45.588 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:38:45.588 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:38:45.718 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:38:45.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:46.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:46.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:46.208 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:38:46.208 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:38:46.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 18:38:46.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=152, R2=158, Total=310. Warn if over 250 bubbles per interval.
17-03-17 18:38:47.428 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:38:47.428 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:38:47.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:38:47.448 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:38:47.448 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:38:47.448 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:38:47.598 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:38:47.618 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:38:47.618 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:38:47.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:38:47.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:38:47.688 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:38:47.788 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:38:47.788 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:38:47.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:47.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:38:47.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:38:47.818 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:38:47.948 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:38:47.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:48.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:48.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:48.888 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:38:48.888 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:38:49.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:49.048 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:38:49.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:38:49.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:49.208 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:38:49.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:38:49.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:38:49.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:38:49.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:49.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:49.818 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.977204,
17-03-17 18:38:49.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:49.828 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:38:49.828 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:38:49.828 -07 000000618 INF: WaitCommand(10000) start
17-03-17 18:38:49.828 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:38:49.828 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:38:51.048 -07 000000012 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:38:51.048 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-17 18:38:51.078 -07 000000012 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:38:51.078 -07 000000012 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:38:51.208 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:38:51.248 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:51.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 18:38:51.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=153, R2=159, Total=312. Warn if over 250 bubbles per interval.
17-03-17 18:38:52.778 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:52.808 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:38:53.228 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 18:38:53.258 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:38:53.258 -07 000000012 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:38:53.258 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:38:53.258 -07 000000012 INF: ===================  ===================
17-03-17 18:38:55.178 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.988112,
17-03-17 18:38:56.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:38:56.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=153, R2=159, Total=312. Warn if over 250 bubbles per interval.
17-03-17 18:38:59.838 -07 000000618 INF: WaitCommand(10000) end
17-03-17 18:38:59.838 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:38:59.838 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:38:59.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:38:59.878 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:38:59.878 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:38:59.878 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:39:00.008 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:39:00.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:00.538 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.978563,
17-03-17 18:39:01.608 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:39:01.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=153, R2=160, Total=313. Warn if over 250 bubbles per interval.
17-03-17 18:39:05.898 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.973092,
17-03-17 18:39:06.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:06.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:06.608 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-17 18:39:06.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:06.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:06.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:07.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:07.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:07.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:07.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:07.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:08.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:08.008 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:39:08.008 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:39:08.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:08.168 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:39:08.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:39:08.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:08.328 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:39:08.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:39:08.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:39:08.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:39:08.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:08.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:08.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:08.948 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:39:08.948 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:39:10.168 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:39:10.168 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:39:10.168 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:39:10.188 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:39:10.188 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:39:10.188 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:39:10.398 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:39:10.418 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:39:10.418 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:39:10.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:39:10.488 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:39:10.488 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:39:10.588 -07 000000610 INF: =================== Cycle #16, Pumping Reagent IMT (1) ===================
17-03-17 18:39:10.588 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:39:10.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:10.618 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:39:10.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:39:10.618 -07 000000610 INF: =================== Cycle #16, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:39:10.748 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:39:10.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:11.258 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.016692,
17-03-17 18:39:11.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:11.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:12.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:12.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:12.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:12.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:12.708 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:39:12.708 -07 000000610 INF: =================== Cycle #16, Pumping Reagent IMT (1) ===================
17-03-17 18:39:12.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:12.868 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:39:12.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:39:12.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:13.028 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:39:13.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:39:13.028 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:39:13.158 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:39:13.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:13.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:13.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:13.648 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:39:13.648 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:39:14.868 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:39:14.868 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:39:14.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:39:14.888 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:39:14.888 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:39:14.888 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:39:15.118 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:39:15.138 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:39:15.138 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:39:15.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:39:15.208 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:39:15.208 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:39:15.308 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:39:15.308 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:39:15.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:15.338 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:39:15.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:39:15.338 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:39:15.468 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:39:15.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:16.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:16.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:16.408 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:39:16.408 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:39:16.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:16.568 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:39:16.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:39:16.608 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:16.618 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.05619,
17-03-17 18:39:16.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:16.728 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:39:16.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:39:16.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:39:16.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:39:16.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:17.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:17.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:17.348 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:39:17.348 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:39:17.348 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 65° ===================
17-03-17 18:39:17.348 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:39:17.348 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:39:17.348 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:39:17.358 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:39:17.358 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:39:17.358 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 18:39:17.368 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:39:17.368 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 65° ===================
17-03-17 18:39:17.368 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:39:17.368 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:39:21.608 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:21.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:21.978 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.050752,
17-03-17 18:39:26.608 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:26.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:27.338 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.008536,
17-03-17 18:39:31.608 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:31.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:32.698 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.016692,
17-03-17 18:39:36.608 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:36.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:38.058 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.005817,
17-03-17 18:39:41.608 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:41.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:43.418 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.994908,
17-03-17 18:39:46.608 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:46.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:47.378 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:39:47.378 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:39:47.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:39:47.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:47.508 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:39:47.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:39:47.508 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:39:47.638 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:39:47.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:48.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:48.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:48.248 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:39:48.248 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:39:48.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:48.408 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:39:48.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:39:48.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:39:48.568 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:39:48.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:39:48.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:39:48.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:39:48.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:48.778 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.977204,
17-03-17 18:39:49.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:49.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:49.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:39:49.188 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:39:49.188 -07 000000551 INF: WaitCommand(30000) start
17-03-17 18:39:49.188 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:39:49.188 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:39:50.408 -07 000000438 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:39:50.408 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 18:39:50.438 -07 000000438 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:39:50.438 -07 000000438 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:39:50.568 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:39:50.608 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:51.608 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:51.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:52.948 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:52.978 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:39:53.398 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 18:39:53.428 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:39:53.428 -07 000000438 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:39:53.428 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:39:53.428 -07 000000438 INF: ===================  ===================
17-03-17 18:39:54.138 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.997626,
17-03-17 18:39:56.608 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:39:56.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:39:59.498 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.001704,
17-03-17 18:40:01.608 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:01.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:04.858 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.993549,
17-03-17 18:40:06.608 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:06.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:10.218 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.985358,
17-03-17 18:40:11.618 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:11.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:15.578 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.99219,
17-03-17 18:40:16.618 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:19.198 -07 000000551 INF: WaitCommand(30000) end
17-03-17 18:40:19.198 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 22° ===================
17-03-17 18:40:19.198 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:40:19.198 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:40:19.208 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:40:19.218 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 2 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:40:19.218 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:40:19.218 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-17 18:40:19.228 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:19.228 -07 000000610 INF: =================== Cycle #16, Flow Cell Temp 22° ===================
17-03-17 18:40:19.228 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:40:19.228 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:40:19.228 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:40:19.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:19.268 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:40:19.268 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:40:19.268 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:40:19.398 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:40:19.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:20.938 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.994908,
17-03-17 18:40:21.618 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:21.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:22.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:22.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:23.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:23.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:23.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:23.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:23.498 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:40:23.498 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:40:23.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:23.658 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:40:23.658 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:40:23.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:23.818 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:40:23.818 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:40:23.818 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:40:23.948 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:40:23.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:24.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:24.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:24.438 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:40:24.438 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:40:25.658 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:40:25.658 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:40:25.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:40:25.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:40:25.678 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:40:25.678 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:40:25.828 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:40:25.848 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:40:25.848 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:40:25.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:40:25.918 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:40:25.918 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:40:26.018 -07 000000610 INF: =================== Cycle #16, Pumping Reagent USM (2) ===================
17-03-17 18:40:26.018 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:40:26.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:26.048 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:40:26.048 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:40:26.048 -07 000000610 INF: =================== Cycle #16, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:40:26.178 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:40:26.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:26.298 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.988112,
17-03-17 18:40:26.618 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:26.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:27.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:27.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:28.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:28.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:28.138 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:40:28.138 -07 000000610 INF: =================== Cycle #16, Pumping Reagent USM (2) ===================
17-03-17 18:40:28.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:28.298 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:40:28.298 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:40:28.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:28.458 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:40:28.458 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:40:28.458 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:40:28.588 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:40:28.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:29.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:29.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:29.078 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:40:29.078 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:40:30.298 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:40:30.298 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:40:30.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:40:30.318 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:40:30.318 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:40:30.318 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:40:30.468 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:40:30.488 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:40:30.488 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:40:30.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:40:30.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:40:30.558 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:40:30.658 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:40:30.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:40:30.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:30.688 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:40:30.688 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:40:30.688 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:40:30.818 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:40:30.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:31.618 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:31.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:31.658 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.996267,
17-03-17 18:40:31.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:31.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:31.758 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:40:31.758 -07 000000610 INF: =================== Cycle #16, Pumping Reagent PR2 (3) ===================
17-03-17 18:40:31.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:31.918 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:40:31.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:40:32.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:40:32.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:40:32.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:40:32.078 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:40:32.208 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:40:32.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:32.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:32.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:32.698 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:40:32.698 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:40:32.698 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:40:32.698 -07 000000561 INF: WaitCommand(10000) start
17-03-17 18:40:32.698 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:40:33.918 -07 000000626 INF: AsyncDelayTimer waited 1213ms
17-03-17 18:40:33.918 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 18:40:33.948 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:40:33.948 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:40:34.078 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:40:34.118 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:35.648 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:35.678 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:40:36.098 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 18:40:36.128 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:40:36.128 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:40:36.128 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:40:36.128 -07 000000626 INF: ===================  ===================
17-03-17 18:40:36.618 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:36.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:37.018 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.005817,
17-03-17 18:40:41.618 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:41.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:42.378 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.016692,
17-03-17 18:40:42.708 -07 000000561 INF: WaitCommand(10000) end
17-03-17 18:40:42.708 -07 000000610 INF: =================== Cycle #16, Imaging ===================
17-03-17 18:40:42.708 -07 000000610 INF: Imaging Cycle 16: ScanTilesCommand Cycle 16 time start.
17-03-17 18:40:42.708 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:40:42.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:40:42.738 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:40:42.738 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:40:42.738 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:40:43.038 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:40:43.058 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:40:43.058 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:40:43.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:40:43.128 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:40:43.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:40:43.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:40:43.128 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:40:43.128 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:40:43.128 -07 000000569 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:40:43.138 -07 000000551 INF: FPGA: Recv EXLED1ON 
17-03-17 18:40:43.138 -07 000000569 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:40:43.138 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:40:43.138 -07 000000551 INF: FPGA: Recv EXLED1ADCR 23158
17-03-17 18:40:43.148 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:43.148 -07 000000569 INF: RedLED: Using Red data: Photodiode ADC 23158 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-17 18:40:43.148 -07 000000569 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:40:43.148 -07 000000551 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:40:43.158 -07 000000569 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:43.158 -07 000000569 INF: RedLED: LED was on for 19 ms
17-03-17 18:40:43.158 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-17 18:40:43.158 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:40:43.158 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:40:43.158 -07 000000569 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:40:43.158 -07 000000551 INF: FPGA: Recv EXLED2ON 
17-03-17 18:40:43.168 -07 000000569 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:40:43.168 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:40:43.168 -07 000000551 INF: FPGA: Recv EXLED1ADCR 2097
17-03-17 18:40:43.178 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:43.178 -07 000000569 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-17 18:40:43.178 -07 000000569 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:40:43.178 -07 000000551 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:40:43.188 -07 000000569 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:43.188 -07 000000569 INF: GreenLED: LED was on for 20 ms
17-03-17 18:40:43.188 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 18:40:43.188 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:40:43.188 -07 000000551 INF: FPGA: Recv EMCUR 
17-03-17 18:40:43.198 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:40:43.198 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:40:43.698 -07 000000551 INF: FPGA: Recv EMOUT
17-03-17 18:40:43.698 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:40:43.698 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:40:43.698 -07 000000551 INF: FPGA: Recv EMCUR 
17-03-17 18:40:43.708 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:40:43.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:40:43.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.127377136942789. ------
17-03-17 18:40:43.718 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:40:43.718 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17926 mm
17-03-17 18:40:43.718 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:40:44.488 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:40:44.488 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 760 ms to get response, and 770 ms overall
17-03-17 18:40:44.488 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:40:44.488 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:40:44.488 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 18:40:44.498 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:40:45.018 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39159, sync = True, waitForSettling = False)
17-03-17 18:40:45.018 -07 000000431 INF: Z Motor: Moving to -0.179258 mm, started at -0.127377 mm, distance = -51.88 um
17-03-17 18:40:45.018 -07 000000431 INF: FPGA: Xmit ZDACW 39159\n [Z Motor]
17-03-17 18:40:45.548 -07 000000512 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:40:45.548 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:40:45.548 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:40:45.548 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1050 ms to get response, and 1059 ms overall
17-03-17 18:40:45.548 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1040 ms to get response, and 1058 ms overall
17-03-17 18:40:45.548 -07 000000012 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:40:45.548 -07 000000012 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:40:45.548 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:40:45.548 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:40:45.548 -07 000000431 INF: FPGA: 'ZDACW 39159' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 18:40:45.558 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:40:45.558 -07 000000551 INF: FPGA: Recv ZDACR 39159
17-03-17 18:40:45.568 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:40:45.568 -07 000000431 INF: Z Motor: MoveAbsStepped took 548 ms (did NOT wait for settling yet))
17-03-17 18:40:46.618 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:46.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:47.228 -07 000000551 INF: FPGA: Recv YMVTO 122703 24781
17-03-17 18:40:47.228 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1686 ms overall
17-03-17 18:40:47.228 -07 000000012 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:40:47.228 -07 000000012 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24781 steps (15.488 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:40:47.228 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1686 ms, distance = 15.472 mm, average velocity = 9.177 mm/sec
17-03-17 18:40:47.738 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.019446,
17-03-17 18:40:50.078 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:40:50.078 -07 000000551 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:40:50.088 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.088 -07 000000012 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:40:50.108 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:40:50.108 -07 000000012 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:40:50.108 -07 000000012 INF: Y Motor: Moved to 59.9116 after 5620 ms
17-03-17 18:40:50.108 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179258 mm (DAC = 39159)
17-03-17 18:40:50.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.118 -07 000000431 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:40:50.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:40:50.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.118 -07 000000541 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:40:50.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:40:50.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.128 -07 000000551 INF: FPGA: Recv ZSGSRD 37191
17-03-17 18:40:50.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.138 -07 000000512 INF: FPGA: Recv ZSGSRD 37189
17-03-17 18:40:50.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.148 -07 000000561 INF: FPGA: Recv ZSGSRD 37195
17-03-17 18:40:50.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.158 -07 000000541 INF: FPGA: Recv ZSGSRD 37191
17-03-17 18:40:50.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.168 -07 000000561 INF: FPGA: Recv ZSGSRD 37186
17-03-17 18:40:50.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.178 -07 000000541 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:40:50.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.188 -07 000000512 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:40:50.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:50.198 -07 000000551 INF: FPGA: Recv ZSGSRD 37193
17-03-17 18:40:50.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.208 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:40:50.208 -07 000000512 INF: FPGA: Recv ZPIEZORD 33518
17-03-17 18:40:50.218 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.218 -07 000000569 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.975 V. Piezo Error = -8.1 V.
17-03-17 18:40:50.218 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37192 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37192 (-178.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37186 (-178.3 uncal um), Max = 37195 (-178.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:40:50.218 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37192, posNoise = 3, negNoise = 6
17-03-17 18:40:50.218 -07 000000569 INF: Z Motor: After move to -0.179258, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:40:50.218 -07 000000569 INF: Z Motor: Settle wait time = 5096 ms, measure time = 103 ms (allowed 150 ms), total time = 5199 ms
17-03-17 18:40:50.218 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:40:50.268 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6549 ms
17-03-17 18:40:50.268 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:40:50.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:40:50.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:40:50.268 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:40:50.268 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:40:50.268 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:40:50.268 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:40:50.268 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:40:50.268 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:40:50.298 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 18:40:50.298 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:40:50.298 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:40:50.298 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:40:50.318 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:40:50.318 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 18:40:50.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:40:50.358 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:40:50.558 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:40:50.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:40:50.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:40:50.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 18:40:50.598 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:40:50.598 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:40:50.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:40:50.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:40:50.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:50.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:40:50.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:40:50.698 -07 000000431 INF: Image SNR check: start
17-03-17 18:40:50.698 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:40:50.698 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:40:50.708 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:40:50.708 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:40:50.718 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=71.76]
17-03-17 18:40:50.718 -07 000000431 INF: Autofocus start
17-03-17 18:40:50.718 -07 000000431 INF: MeasureProfile start
17-03-17 18:40:50.728 -07 000000431 INF: MeasureProfile done
17-03-17 18:40:50.728 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:40:50.728 -07 000000431 INF: Autofocus finished
17-03-17 18:40:50.908 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:40:50.908 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:40:50.908 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179252649987508. ----------
17-03-17 18:40:50.918 -07 000000610 INF: Cycle	16	Tile	1	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:40:50.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37656, sync = True, waitForSettling = True)
17-03-17 18:40:50.918 -07 000000610 INF: Z Motor: Moving to -0.172378 mm, started at -0.179253 mm, distance = 6.87 um
17-03-17 18:40:50.918 -07 000000610 INF: FPGA: Xmit ZDACW 37656\n [Z Motor]
17-03-17 18:40:50.918 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:40:50.928 -07 000000610 INF: FPGA: 'ZDACW 37656' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:40:50.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:40:50.928 -07 000000512 INF: FPGA: Recv ZDACR 37656
17-03-17 18:40:50.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:50.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:40:51.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.088 -07 000000438 INF: FPGA: Recv ZSGSRD 36122
17-03-17 18:40:51.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:40:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.098 -07 000000512 INF: FPGA: Recv ZSGSRD 36129
17-03-17 18:40:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.108 -07 000000475 INF: FPGA: Recv ZSGSRD 36123
17-03-17 18:40:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.118 -07 000000541 INF: FPGA: Recv ZSGSRD 36124
17-03-17 18:40:51.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.128 -07 000000431 INF: FPGA: Recv ZSGSRD 36134
17-03-17 18:40:51.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.138 -07 000000012 INF: FPGA: Recv ZSGSRD 36124
17-03-17 18:40:51.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36110
17-03-17 18:40:51.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.158 -07 000000561 INF: FPGA: Recv ZSGSRD 36120
17-03-17 18:40:51.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.168 -07 000000561 INF: FPGA: Recv ZSGSRD 36133
17-03-17 18:40:51.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:51.178 -07 000000569 INF: FPGA: Recv ZSGSRD 36129
17-03-17 18:40:51.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:40:51.188 -07 000000569 INF: FPGA: Recv ZPIEZORD 32104
17-03-17 18:40:51.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:51.198 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.746 V. Piezo Error = -8.9 V.
17-03-17 18:40:51.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36125 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36124 (-171.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 36110 (-171.4 uncal um), Max = 36134 (-171.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 15 (0.1 uncal um)
17-03-17 18:40:51.198 -07 000000610 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36125, posNoise = 9, negNoise = 15
17-03-17 18:40:51.198 -07 000000610 INF: Z Motor: After move to -0.172378, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:40:51.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:40:51.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:40:51.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:40:51.198 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:40:51.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:40:51.198 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:40:51.208 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:40:51.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:40:51.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:40:51.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:40:51.208 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:40:51.208 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:40:51.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:40:51.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:40:51.208 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:40:51.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:40:51.218 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:40:51.228 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:40:51.228 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:40:51.228 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:40:51.228 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:40:51.238 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:40:51.238 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 18:40:51.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37833 150\n [Camera]
17-03-17 18:40:51.438 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:40:51.618 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:51.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:51.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:40:51.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:40:51.838 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:40:51.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:40:51.838 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:40:51.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:40:51.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:40:51.838 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:40:51.838 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:40:51.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:40:52.028 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37833 779
17-03-17 18:40:52.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:40:52.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:40:52.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:40:52.218 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:40:52.218 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:52.218 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:40:52.218 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:52.228 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:40:52.228 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:40:52.228 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:40:52.238 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:40:52.368 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:40:52.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:40:52.368 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:40:52.368 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:40:52.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:40:52.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:40:52.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:40:52.378 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:40:52.378 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:40:52.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1131187416, 0x0, 418435064) start.
17-03-17 18:40:52.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:40:52.558 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:40:52.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37833 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-17 18:40:52.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:40:52.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.17239801563225. ------
17-03-17 18:40:52.568 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:40:52.748 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1131187416, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:40:52.748 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:40:52.748 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:52.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:40:52.758 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:40:52.758 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:52.758 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:40:52.768 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:40:52.768 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:40:52.768 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:40:52.778 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17875 mm
17-03-17 18:40:52.778 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:40:52.788 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:40:52.788 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 211 ms to get response, and 217 ms overall
17-03-17 18:40:52.788 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:40:52.788 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:40:52.788 -07 000000569 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:40:52.798 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:40:53.748 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 39049, sync = True, waitForSettling = False)
17-03-17 18:40:53.748 -07 000000626 INF: Z Motor: Moving to -0.178755 mm, started at -0.172398 mm, distance = -6.36 um
17-03-17 18:40:53.748 -07 000000626 INF: FPGA: Xmit ZDACW 39049\n [Z Motor]
17-03-17 18:40:54.748 -07 000000541 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:40:54.748 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:40:54.748 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1950 ms to get response, and 1959 ms overall
17-03-17 18:40:54.748 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1940 ms to get response, and 1957 ms overall
17-03-17 18:40:54.748 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:40:54.748 -07 000000626 INF: FPGA: 'ZDACW 39049' command took 0 ms to send, 991 ms to get response, and 1000 ms overall
17-03-17 18:40:54.748 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:40:54.748 -07 000000569 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:40:54.748 -07 000000569 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:40:54.748 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.018051,
17-03-17 18:40:54.748 -07 000000569 INF: Y Motor: Moving 1330 steps2
17-03-17 18:40:54.748 -07 000000541 INF: FPGA: Recv ZDACR 39049
17-03-17 18:40:54.758 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:40:54.758 -07 000000626 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 18:40:54.778 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:40:55.148 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:40:55.148 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 401 ms overall
17-03-17 18:40:55.178 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:40:55.188 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:40:55.188 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:40:55.188 -07 000000569 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:40:55.188 -07 000000569 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:40:55.188 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.831 mm, average velocity = 2.072 mm/sec
17-03-17 18:40:56.138 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:40:56.138 -07 000000012 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:40:56.148 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:40:56.148 -07 000000569 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:40:56.168 -07 000000569 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:40:56.168 -07 000000569 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:40:56.168 -07 000000569 INF: Y Motor: Moved to 60.7334 after 3380 ms (table move)
17-03-17 18:40:56.168 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178755 mm (DAC = 39049)
17-03-17 18:40:56.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.178 -07 000000512 INF: FPGA: Recv ZSGSRD 37116
17-03-17 18:40:56.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:40:56.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.178 -07 000000626 INF: FPGA: Recv ZSGSRD 37120
17-03-17 18:40:56.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.188 -07 000000569 INF: FPGA: Recv ZSGSRD 37114
17-03-17 18:40:56.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.198 -07 000000541 INF: FPGA: Recv ZSGSRD 37114
17-03-17 18:40:56.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.208 -07 000000512 INF: FPGA: Recv ZSGSRD 37117
17-03-17 18:40:56.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.218 -07 000000551 INF: FPGA: Recv ZSGSRD 37117
17-03-17 18:40:56.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.228 -07 000000012 INF: FPGA: Recv ZSGSRD 37125
17-03-17 18:40:56.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.238 -07 000000569 INF: FPGA: Recv ZSGSRD 37120
17-03-17 18:40:56.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.248 -07 000000551 INF: FPGA: Recv ZSGSRD 37115
17-03-17 18:40:56.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:56.258 -07 000000475 INF: FPGA: Recv ZSGSRD 37121
17-03-17 18:40:56.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.268 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:40:56.268 -07 000000569 INF: FPGA: Recv ZPIEZORD 33427
17-03-17 18:40:56.278 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.278 -07 000000561 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -8.2 V.
17-03-17 18:40:56.278 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37118 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37117 (-177.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37114 (-177.9 uncal um), Max = 37125 (-177.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:40:56.278 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37118, posNoise = 7, negNoise = 4
17-03-17 18:40:56.278 -07 000000561 INF: Z Motor: After move to -0.178755, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:40:56.278 -07 000000561 INF: Z Motor: Settle wait time = 2426 ms, measure time = 103 ms (allowed 150 ms), total time = 2529 ms
17-03-17 18:40:56.278 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:40:56.328 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3542 ms
17-03-17 18:40:56.328 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:40:56.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:40:56.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:40:56.328 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:40:56.328 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:40:56.328 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:40:56.328 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:40:56.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:40:56.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:40:56.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:40:56.338 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:40:56.348 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:40:56.348 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:40:56.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:40:56.388 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:40:56.588 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:40:56.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:40:56.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:40:56.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 18:40:56.618 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:40:56.628 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:40:56.628 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:40:56.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:40:56.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:40:56.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:56.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:40:56.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:40:56.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:40:56.728 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:40:56.728 -07 000000541 INF: Autofocus start
17-03-17 18:40:56.728 -07 000000541 INF: MeasureProfile start
17-03-17 18:40:56.728 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:40:56.738 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:40:56.738 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:40:56.738 -07 000000541 INF: MeasureProfile done
17-03-17 18:40:56.738 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:40:56.738 -07 000000541 INF: Autofocus finished
17-03-17 18:40:56.938 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:40:56.938 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:40:56.938 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178777258289018. ----------
17-03-17 18:40:56.948 -07 000000610 INF: Cycle	16	Tile	2	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:40:56.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37564, sync = True, waitForSettling = True)
17-03-17 18:40:56.948 -07 000000610 INF: Z Motor: Moving to -0.171957 mm, started at -0.178777 mm, distance = 6.82 um
17-03-17 18:40:56.948 -07 000000610 INF: FPGA: Xmit ZDACW 37564\n [Z Motor]
17-03-17 18:40:56.948 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:40:56.958 -07 000000610 INF: FPGA: 'ZDACW 37564' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:40:56.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:40:56.958 -07 000000551 INF: FPGA: Recv ZDACR 37564
17-03-17 18:40:56.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:56.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:40:57.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.118 -07 000000561 INF: FPGA: Recv ZSGSRD 36057
17-03-17 18:40:57.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:40:57.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.128 -07 000000551 INF: FPGA: Recv ZSGSRD 36057
17-03-17 18:40:57.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.138 -07 000000626 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:40:57.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.148 -07 000000569 INF: FPGA: Recv ZSGSRD 36058
17-03-17 18:40:57.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:40:57.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36062
17-03-17 18:40:57.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.178 -07 000000626 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:40:57.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.188 -07 000000569 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:40:57.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.198 -07 000000626 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:40:57.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:40:57.208 -07 000000561 INF: FPGA: Recv ZSGSRD 36052
17-03-17 18:40:57.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:40:57.218 -07 000000626 INF: FPGA: Recv ZPIEZORD 32009
17-03-17 18:40:57.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:40:57.228 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -8.9 V.
17-03-17 18:40:57.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36058 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36059 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36052 (-171.0 uncal um), Max = 36062 (-171.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:40:57.228 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36058, posNoise = 4, negNoise = 6
17-03-17 18:40:57.228 -07 000000610 INF: Z Motor: After move to -0.171957, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:40:57.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:40:57.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:40:57.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:40:57.228 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:40:57.228 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:40:57.228 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:40:57.228 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:40:57.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:40:57.228 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:40:57.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:40:57.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:40:57.228 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:40:57.228 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:40:57.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:40:57.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:40:57.238 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:40:57.238 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:40:57.238 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:40:57.238 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:40:57.248 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:40:57.248 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:40:57.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37740 150\n [Camera]
17-03-17 18:40:57.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:40:57.838 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:40:57.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:40:57.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:40:57.848 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:40:57.848 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:40:57.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:40:57.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:40:57.848 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:40:57.848 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:40:57.848 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:40:58.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37740 779
17-03-17 18:40:58.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:40:58.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:40:58.218 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:40:58.218 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:58.218 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:40:58.218 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:40:58.218 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:58.228 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:40:58.228 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:40:58.228 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:40:58.238 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:40:58.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1119
17-03-17 18:40:58.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1119
17-03-17 18:40:58.378 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:40:58.378 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:40:58.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:40:58.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1119
17-03-17 18:40:58.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1119
17-03-17 18:40:58.378 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:40:58.378 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:40:58.378 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:40:58.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:40:58.568 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:40:58.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37740 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:40:58.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:40:58.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.171967593418752. ------
17-03-17 18:40:58.578 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17851 mm
17-03-17 18:40:58.578 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:40:58.578 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:40:58.578 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:40:58.578 -07 000000551 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:40:58.588 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:40:58.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:40:58.758 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:40:58.758 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:58.758 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:40:58.758 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:40:58.758 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:40:58.758 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:40:58.768 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:40:58.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:40:58.768 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:40:58.778 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38995, sync = True, waitForSettling = False)
17-03-17 18:40:58.778 -07 000000012 INF: Z Motor: Moving to -0.178508 mm, started at -0.171968 mm, distance = -6.54 um
17-03-17 18:40:58.778 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:40:58.778 -07 000000626 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:40:58.778 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 188 ms to get response, and 202 ms overall
17-03-17 18:40:58.778 -07 000000012 INF: FPGA: Xmit ZDACW 38995\n [Z Motor]
17-03-17 18:40:58.778 -07 000000551 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:40:58.778 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 198 ms to get response, and 204 ms overall
17-03-17 18:40:58.788 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:40:58.788 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:40:58.788 -07 000000012 INF: FPGA: 'ZDACW 38995' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:40:58.788 -07 000000551 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:40:58.788 -07 000000551 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:40:58.798 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:40:58.808 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:40:58.808 -07 000000626 INF: FPGA: Recv ZDACR 38995
17-03-17 18:40:58.818 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:40:58.818 -07 000000012 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 18:40:58.988 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:40:58.988 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:40:59.168 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:40:59.168 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:40:59.228 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:40:59.228 -07 000000626 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:40:59.238 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:40:59.238 -07 000000551 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:40:59.238 -07 000000551 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:40:59.238 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.185 mm/sec
17-03-17 18:41:00.128 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.99219,
17-03-17 18:41:00.188 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:00.188 -07 000000626 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:41:00.198 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:00.198 -07 000000551 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:00.228 -07 000000551 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:00.228 -07 000000551 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:00.228 -07 000000551 INF: Y Motor: Moved to 61.5645 after 1646 ms (table move)
17-03-17 18:41:00.228 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178508 mm (DAC = 38995)
17-03-17 18:41:00.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.228 -07 000000569 INF: FPGA: Recv ZSGSRD 37079
17-03-17 18:41:00.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:41:00.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.238 -07 000000438 INF: FPGA: Recv ZSGSRD 37082
17-03-17 18:41:00.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.248 -07 000000569 INF: FPGA: Recv ZSGSRD 37082
17-03-17 18:41:00.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.258 -07 000000551 INF: FPGA: Recv ZSGSRD 37080
17-03-17 18:41:00.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.268 -07 000000626 INF: FPGA: Recv ZSGSRD 37075
17-03-17 18:41:00.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.278 -07 000000438 INF: FPGA: Recv ZSGSRD 37068
17-03-17 18:41:00.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.288 -07 000000626 INF: FPGA: Recv ZSGSRD 37076
17-03-17 18:41:00.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.298 -07 000000551 INF: FPGA: Recv ZSGSRD 37073
17-03-17 18:41:00.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.308 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.308 -07 000000569 INF: FPGA: Recv ZSGSRD 37080
17-03-17 18:41:00.318 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.318 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:00.318 -07 000000012 INF: FPGA: Recv ZSGSRD 37073
17-03-17 18:41:00.328 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:00.328 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:00.328 -07 000000569 INF: FPGA: Recv ZPIEZORD 33407
17-03-17 18:41:00.338 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:00.338 -07 000000475 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.1 V.
17-03-17 18:41:00.338 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37077 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37078 (-177.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37068 (-177.6 uncal um), Max = 37082 (-177.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:41:00.338 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37077, posNoise = 5, negNoise = 9
17-03-17 18:41:00.338 -07 000000475 INF: Z Motor: After move to -0.178508, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:00.338 -07 000000475 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:41:00.338 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:00.388 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1811 ms
17-03-17 18:41:00.388 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:00.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:00.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:00.388 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:00.388 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:00.388 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:00.388 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:00.388 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:00.388 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:00.398 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:00.398 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:00.398 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:41:00.398 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:00.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:00.448 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:00.648 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:00.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:00.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:00.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:41:00.688 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:00.688 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:00.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:41:00.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:41:00.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:00.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:00.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:41:00.788 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:00.788 -07 000000561 INF: Autofocus start
17-03-17 18:41:00.788 -07 000000561 INF: MeasureProfile start
17-03-17 18:41:00.788 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:00.798 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:00.798 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:00.798 -07 000000561 INF: MeasureProfile done
17-03-17 18:41:00.798 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:41:00.798 -07 000000561 INF: Autofocus finished
17-03-17 18:41:00.998 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:00.998 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:41:00.998 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178513865591206. ----------
17-03-17 18:41:01.008 -07 000000610 INF: Cycle	16	Tile	3	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:01.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37509, sync = True, waitForSettling = True)
17-03-17 18:41:01.008 -07 000000610 INF: Z Motor: Moving to -0.171705 mm, started at -0.178514 mm, distance = 6.81 um
17-03-17 18:41:01.008 -07 000000610 INF: FPGA: Xmit ZDACW 37509\n [Z Motor]
17-03-17 18:41:01.008 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:41:01.018 -07 000000610 INF: FPGA: 'ZDACW 37509' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:01.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:01.018 -07 000000012 INF: FPGA: Recv ZDACR 37509
17-03-17 18:41:01.028 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:01.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.178 -07 000000438 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:41:01.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:01.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:41:01.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.198 -07 000000569 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:41:01.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36016
17-03-17 18:41:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:41:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36020
17-03-17 18:41:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.238 -07 000000561 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:41:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.248 -07 000000438 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:41:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.258 -07 000000561 INF: FPGA: Recv ZSGSRD 36019
17-03-17 18:41:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:01.268 -07 000000475 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:41:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:01.278 -07 000000626 INF: FPGA: Recv ZPIEZORD 31980
17-03-17 18:41:01.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:01.288 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.9 V.
17-03-17 18:41:01.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36019 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36018 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36016 (-170.8 uncal um), Max = 36023 (-170.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:41:01.288 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36019, posNoise = 4, negNoise = 3
17-03-17 18:41:01.288 -07 000000610 INF: Z Motor: After move to -0.171705, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:01.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:41:01.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:01.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:01.288 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:01.288 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:01.288 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:01.288 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:01.288 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:01.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:01.288 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:01.288 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:01.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:01.288 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:01.288 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:01.298 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:01.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:41:01.298 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:01.298 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:41:01.298 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:01.298 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:41:01.298 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:01.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37686 150\n [Camera]
17-03-17 18:41:01.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:01.618 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:01.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:01.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:01.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:01.898 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:01.898 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:01.898 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2191720664, 0x0, 391868352) start.
17-03-17 18:41:01.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:01.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:01.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:01.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:01.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2227142928, 0x0, 418435064) start.
17-03-17 18:41:02.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37686 779
17-03-17 18:41:02.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:02.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2227142928, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:41:02.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:41:02.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:02.278 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2191720664, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:41:02.278 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:02.278 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:02.278 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:02.278 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:02.278 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:41:02.288 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:41:02.428 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:02.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:02.428 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:02.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:02.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:02.568 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:02.578 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:02.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:41:02.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:02.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:41:02.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:02.618 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:02.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37686 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-17 18:41:02.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:02.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171717049145223. ------
17-03-17 18:41:02.628 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17794 mm
17-03-17 18:41:02.628 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:02.628 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:02.628 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:41:02.628 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:41:02.638 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:02.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:41:02.958 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:41:02.958 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:02.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:41:02.958 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:02.958 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:02.958 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:02.958 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:02.958 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 18:41:02.968 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:41:02.978 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38871, sync = True, waitForSettling = False)
17-03-17 18:41:02.978 -07 000000438 INF: Z Motor: Moving to -0.177940 mm, started at -0.171717 mm, distance = -6.22 um
17-03-17 18:41:02.978 -07 000000438 INF: FPGA: Xmit ZDACW 38871\n [Z Motor]
17-03-17 18:41:02.978 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:02.978 -07 000000431 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:41:02.978 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 345 ms to get response, and 349 ms overall
17-03-17 18:41:02.978 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 335 ms to get response, and 345 ms overall
17-03-17 18:41:02.978 -07 000000569 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:02.978 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:41:02.978 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:02.978 -07 000000569 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:41:02.988 -07 000000438 INF: FPGA: 'ZDACW 38871' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:02.988 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:02.998 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:02.998 -07 000000431 INF: FPGA: Recv ZDACR 38871
17-03-17 18:41:03.008 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:03.008 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:41:03.008 -07 000000438 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 18:41:03.188 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:03.188 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 208 ms overall
17-03-17 18:41:03.378 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:41:03.388 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 404 ms overall
17-03-17 18:41:03.438 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:03.438 -07 000000438 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:41:03.448 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:03.448 -07 000000569 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:03.448 -07 000000569 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:41:03.448 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.838 mm, average velocity = 2.070 mm/sec
17-03-17 18:41:04.398 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:04.398 -07 000000431 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:41:04.408 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:04.408 -07 000000569 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:04.438 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:04.438 -07 000000569 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:04.438 -07 000000569 INF: Y Motor: Moved to 62.3960 after 1804 ms (table move)
17-03-17 18:41:04.438 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177940 mm (DAC = 38871)
17-03-17 18:41:04.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.448 -07 000000431 INF: FPGA: Recv ZSGSRD 36988
17-03-17 18:41:04.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:41:04.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.448 -07 000000551 INF: FPGA: Recv ZSGSRD 36983
17-03-17 18:41:04.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:04.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.458 -07 000000551 INF: FPGA: Recv ZSGSRD 36991
17-03-17 18:41:04.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.468 -07 000000551 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:41:04.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.478 -07 000000551 INF: FPGA: Recv ZSGSRD 36989
17-03-17 18:41:04.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.488 -07 000000551 INF: FPGA: Recv ZSGSRD 36991
17-03-17 18:41:04.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.498 -07 000000569 INF: FPGA: Recv ZSGSRD 36987
17-03-17 18:41:04.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.508 -07 000000551 INF: FPGA: Recv ZSGSRD 36991
17-03-17 18:41:04.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.518 -07 000000551 INF: FPGA: Recv ZSGSRD 36992
17-03-17 18:41:04.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:04.528 -07 000000438 INF: FPGA: Recv ZSGSRD 36988
17-03-17 18:41:04.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.538 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:04.538 -07 000000569 INF: FPGA: Recv ZPIEZORD 33293
17-03-17 18:41:04.548 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:04.548 -07 000000012 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.2 V.
17-03-17 18:41:04.548 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36989 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36990 (-177.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36983 (-177.0 uncal um), Max = 36993 (-177.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:41:04.548 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36989, posNoise = 4, negNoise = 6
17-03-17 18:41:04.548 -07 000000012 INF: Z Motor: After move to -0.177940, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:04.548 -07 000000012 INF: Z Motor: Settle wait time = 1464 ms, measure time = 102 ms (allowed 150 ms), total time = 1566 ms
17-03-17 18:41:04.548 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:04.598 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1963 ms
17-03-17 18:41:04.598 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:04.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:04.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:04.598 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:04.598 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:04.598 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:04.598 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:04.608 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:04.608 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:04.608 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:04.608 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:04.618 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:41:04.618 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:41:04.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:04.668 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:04.858 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:04.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:04.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:04.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:41:04.898 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:04.908 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:04.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:41:04.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:41:04.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:04.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:04.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:41:05.008 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:05.008 -07 000000569 INF: Autofocus start
17-03-17 18:41:05.008 -07 000000569 INF: MeasureProfile start
17-03-17 18:41:05.008 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:05.018 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:05.018 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:05.018 -07 000000569 INF: MeasureProfile done
17-03-17 18:41:05.018 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:41:05.018 -07 000000569 INF: Autofocus finished
17-03-17 18:41:05.218 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:05.218 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:05.218 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.177948534922731. ----------
17-03-17 18:41:05.228 -07 000000610 INF: Cycle	16	Tile	4	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:05.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37368, sync = True, waitForSettling = True)
17-03-17 18:41:05.228 -07 000000610 INF: Z Motor: Moving to -0.171060 mm, started at -0.177949 mm, distance = 6.89 um
17-03-17 18:41:05.228 -07 000000610 INF: FPGA: Xmit ZDACW 37368\n [Z Motor]
17-03-17 18:41:05.228 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:41:05.238 -07 000000610 INF: FPGA: 'ZDACW 37368' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:41:05.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:05.238 -07 000000012 INF: FPGA: Recv ZDACR 37368
17-03-17 18:41:05.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35920
17-03-17 18:41:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.408 -07 000000012 INF: FPGA: Recv ZSGSRD 35918
17-03-17 18:41:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:41:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.428 -07 000000438 INF: FPGA: Recv ZSGSRD 35911
17-03-17 18:41:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.438 -07 000000569 INF: FPGA: Recv ZSGSRD 35919
17-03-17 18:41:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.448 -07 000000626 INF: FPGA: Recv ZSGSRD 35922
17-03-17 18:41:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.458 -07 000000541 INF: FPGA: Recv ZSGSRD 35918
17-03-17 18:41:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.468 -07 000000541 INF: FPGA: Recv ZSGSRD 35915
17-03-17 18:41:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:05.488 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.994908,
17-03-17 18:41:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.498 -07 000000626 INF: FPGA: Recv ZSGSRD 35915
17-03-17 18:41:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:05.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35918
17-03-17 18:41:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:05.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:05.558 -07 000000626 INF: FPGA: Recv ZPIEZORD 31854
17-03-17 18:41:05.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:05.568 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.0 V.
17-03-17 18:41:05.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35917 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35922 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:41:05.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35917, posNoise = 5, negNoise = 6
17-03-17 18:41:05.568 -07 000000610 INF: Z Motor: After move to -0.171060, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:05.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 335 ms)
17-03-17 18:41:05.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:05.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:05.568 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:05.568 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:05.568 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:05.568 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:05.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:05.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:05.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:05.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:05.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:05.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:05.578 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:41:05.578 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:05.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:05.578 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:05.588 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:41:05.588 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:05.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:41:05.588 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:05.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37545 150\n [Camera]
17-03-17 18:41:05.788 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:41:06.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:06.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:06.178 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:06.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:06.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:06.188 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:06.298 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:06.298 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:41:06.308 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:06.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:41:06.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37545 781
17-03-17 18:41:06.528 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:06.618 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:06.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:06.678 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:41:06.678 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:41:06.678 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:06.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:41:06.678 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:41:06.678 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:06.678 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:06.678 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 18:41:06.678 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:06.688 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 18:41:06.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:06.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:06.718 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:06.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:06.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:06.718 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:06.728 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:06.728 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:41:06.728 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:06.728 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:41:06.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:06.908 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:06.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37545 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:41:06.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:06.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.171061779506763. ------
17-03-17 18:41:06.908 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17762 mm
17-03-17 18:41:06.908 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:06.918 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:06.918 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:41:06.918 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:41:06.918 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38802, sync = True, waitForSettling = False)
17-03-17 18:41:06.918 -07 000000541 INF: Z Motor: Moving to -0.177624 mm, started at -0.171062 mm, distance = -6.56 um
17-03-17 18:41:06.928 -07 000000541 INF: FPGA: Xmit ZDACW 38802\n [Z Motor]
17-03-17 18:41:06.938 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:07.098 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:41:07.098 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:41:07.098 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:07.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:41:07.108 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:07.108 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:07.108 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:07.108 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:07.108 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:41:07.118 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:41:07.118 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:07.118 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:41:07.118 -07 000000561 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:41:07.118 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 176 ms to get response, and 201 ms overall
17-03-17 18:41:07.118 -07 000000569 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:07.118 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 196 ms to get response, and 207 ms overall
17-03-17 18:41:07.118 -07 000000541 INF: FPGA: 'ZDACW 38802' command took 0 ms to send, 186 ms to get response, and 200 ms overall
17-03-17 18:41:07.118 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:07.128 -07 000000561 INF: FPGA: Recv ZDACR 38802
17-03-17 18:41:07.128 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:41:07.128 -07 000000541 INF: Z Motor: MoveAbsStepped took 204 ms (did NOT wait for settling yet))
17-03-17 18:41:07.128 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:07.128 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:07.128 -07 000000569 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:41:07.138 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:07.328 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:07.328 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-17 18:41:07.508 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:41:07.508 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:41:07.548 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:07.548 -07 000000561 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:41:07.558 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:07.558 -07 000000569 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:07.558 -07 000000569 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:41:07.558 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.162 mm/sec
17-03-17 18:41:08.508 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:08.508 -07 000000431 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:41:08.518 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:08.518 -07 000000569 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:08.538 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:08.538 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:41:08.538 -07 000000569 INF: Y Motor: Moved to 63.2251 after 1618 ms (table move)
17-03-17 18:41:08.538 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177624 mm (DAC = 38802)
17-03-17 18:41:08.538 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.548 -07 000000551 INF: FPGA: Recv ZSGSRD 36949
17-03-17 18:41:08.548 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:41:08.548 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.548 -07 000000561 INF: FPGA: Recv ZSGSRD 36942
17-03-17 18:41:08.558 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.558 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36930
17-03-17 18:41:08.568 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.568 -07 000000561 INF: FPGA: Recv ZSGSRD 36941
17-03-17 18:41:08.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.578 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.578 -07 000000431 INF: FPGA: Recv ZSGSRD 36946
17-03-17 18:41:08.588 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.588 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.588 -07 000000561 INF: FPGA: Recv ZSGSRD 36931
17-03-17 18:41:08.598 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.598 -07 000000551 INF: FPGA: Recv ZSGSRD 36937
17-03-17 18:41:08.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.608 -07 000000569 INF: FPGA: Recv ZSGSRD 36935
17-03-17 18:41:08.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.618 -07 000000541 INF: FPGA: Recv ZSGSRD 36937
17-03-17 18:41:08.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.628 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:08.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36942
17-03-17 18:41:08.638 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.638 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:08.638 -07 000000561 INF: FPGA: Recv ZPIEZORD 33205
17-03-17 18:41:08.648 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:08.648 -07 000000626 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.3 V.
17-03-17 18:41:08.648 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36939 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36939 (-176.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36930 (-176.7 uncal um), Max = 36949 (-176.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:41:08.648 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36939, posNoise = 10, negNoise = 9
17-03-17 18:41:08.648 -07 000000626 INF: Z Motor: After move to -0.177624, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:08.648 -07 000000626 INF: Z Motor: Settle wait time = 1622 ms, measure time = 103 ms (allowed 150 ms), total time = 1725 ms
17-03-17 18:41:08.648 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:08.698 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1781 ms
17-03-17 18:41:08.698 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:08.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:08.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:08.698 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:08.698 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:08.698 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:08.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:08.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:08.698 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:08.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:08.708 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:08.708 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:08.708 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:41:08.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:08.758 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:08.958 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:08.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:08.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:08.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-17 18:41:08.998 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:08.998 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:08.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:41:09.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:41:09.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:09.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:09.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:41:09.098 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:09.098 -07 000000626 INF: Autofocus start
17-03-17 18:41:09.098 -07 000000626 INF: MeasureProfile start
17-03-17 18:41:09.098 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:09.108 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:09.108 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:09.118 -07 000000626 INF: MeasureProfile done
17-03-17 18:41:09.118 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:41:09.118 -07 000000626 INF: Autofocus finished
17-03-17 18:41:09.308 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:09.308 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:09.308 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177627324315643. ----------
17-03-17 18:41:09.308 -07 000000610 INF: Cycle	16	Tile	5	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:09.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37353, sync = True, waitForSettling = True)
17-03-17 18:41:09.318 -07 000000610 INF: Z Motor: Moving to -0.170991 mm, started at -0.177627 mm, distance = 6.64 um
17-03-17 18:41:09.318 -07 000000610 INF: FPGA: Xmit ZDACW 37353\n [Z Motor]
17-03-17 18:41:09.318 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:41:09.328 -07 000000610 INF: FPGA: 'ZDACW 37353' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:09.328 -07 000000012 INF: FPGA: Recv ZDACR 37353
17-03-17 18:41:09.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.488 -07 000000569 INF: FPGA: Recv ZSGSRD 35907
17-03-17 18:41:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:09.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.498 -07 000000626 INF: FPGA: Recv ZSGSRD 35908
17-03-17 18:41:09.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.508 -07 000000541 INF: FPGA: Recv ZSGSRD 35906
17-03-17 18:41:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.518 -07 000000561 INF: FPGA: Recv ZSGSRD 35909
17-03-17 18:41:09.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.528 -07 000000551 INF: FPGA: Recv ZSGSRD 35903
17-03-17 18:41:09.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.538 -07 000000541 INF: FPGA: Recv ZSGSRD 35917
17-03-17 18:41:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.548 -07 000000012 INF: FPGA: Recv ZSGSRD 35910
17-03-17 18:41:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.558 -07 000000626 INF: FPGA: Recv ZSGSRD 35899
17-03-17 18:41:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.568 -07 000000569 INF: FPGA: Recv ZSGSRD 35906
17-03-17 18:41:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:09.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35904
17-03-17 18:41:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:09.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:09.588 -07 000000431 INF: FPGA: Recv ZPIEZORD 31839
17-03-17 18:41:09.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:09.598 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.0 V.
17-03-17 18:41:09.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35899 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:41:09.598 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 10, negNoise = 8
17-03-17 18:41:09.598 -07 000000610 INF: Z Motor: After move to -0.170991, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:09.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:41:09.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:09.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:09.598 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:09.598 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:09.598 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:09.598 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:09.598 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:09.598 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:09.598 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:09.598 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:09.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:09.608 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:09.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:09.608 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:09.608 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:09.608 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:09.618 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:41:09.618 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:09.618 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:41:09.618 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:09.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37529 150\n [Camera]
17-03-17 18:41:09.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:10.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:10.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:10.218 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:10.218 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:10.218 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:41:10.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:10.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:10.218 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:10.218 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:10.218 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:41:10.408 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37529 779
17-03-17 18:41:10.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:10.598 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:41:10.598 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:41:10.598 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:10.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:41:10.598 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:41:10.598 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:10.598 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:10.598 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:10.598 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:41:10.608 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:41:10.748 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:10.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:10.748 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:10.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:10.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:10.748 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:10.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:41:10.748 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:10.748 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:10.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:41:10.878 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.973092,
17-03-17 18:41:10.938 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:10.938 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:10.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37529 150' command took 2 ms to send, 1315 ms to get response, and 1317 ms overall
17-03-17 18:41:10.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:10.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.170997537385346. ------
17-03-17 18:41:10.948 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17741 mm
17-03-17 18:41:10.948 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:10.948 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:10.948 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:10.948 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:41:10.948 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:41:10.948 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38755, sync = True, waitForSettling = False)
17-03-17 18:41:10.948 -07 000000541 INF: Z Motor: Moving to -0.177409 mm, started at -0.170998 mm, distance = -6.41 um
17-03-17 18:41:10.958 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:10.958 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:10.958 -07 000000438 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:41:10.968 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:41:10.968 -07 000000626 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:10.968 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:10.968 -07 000000626 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:41:10.968 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:10.978 -07 000000541 INF: FPGA: Xmit ZDACW 38755\n [Z Motor]
17-03-17 18:41:10.978 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:41:10.988 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:10.988 -07 000000541 INF: FPGA: 'ZDACW 38755' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 18:41:10.998 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:10.998 -07 000000475 INF: FPGA: Recv ZDACR 38755
17-03-17 18:41:11.008 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:41:11.008 -07 000000541 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:41:11.128 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:41:11.128 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:41:11.128 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:11.138 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:41:11.138 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:41:11.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:11.138 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:41:11.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:11.138 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:41:11.148 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:41:11.168 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:11.168 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-17 18:41:11.358 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:41:11.358 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:41:11.398 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:11.398 -07 000000438 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:41:11.408 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:11.408 -07 000000626 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:11.408 -07 000000626 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:41:11.408 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:41:11.618 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:11.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:12.358 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:12.358 -07 000000012 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:41:12.368 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:12.368 -07 000000626 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:12.398 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:12.398 -07 000000626 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:12.398 -07 000000626 INF: Y Motor: Moved to 64.0576 after 1450 ms (table move)
17-03-17 18:41:12.408 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177409 mm (DAC = 38755)
17-03-17 18:41:12.408 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.408 -07 000000462 INF: FPGA: Recv ZSGSRD 36901
17-03-17 18:41:12.418 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:12.418 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.418 -07 000000626 INF: FPGA: Recv ZSGSRD 36913
17-03-17 18:41:12.428 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.428 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.428 -07 000000512 INF: FPGA: Recv ZSGSRD 36906
17-03-17 18:41:12.438 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.438 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.438 -07 000000462 INF: FPGA: Recv ZSGSRD 36906
17-03-17 18:41:12.448 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.448 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.448 -07 000000569 INF: FPGA: Recv ZSGSRD 36906
17-03-17 18:41:12.458 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.458 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.458 -07 000000512 INF: FPGA: Recv ZSGSRD 36907
17-03-17 18:41:12.468 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.468 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.468 -07 000000626 INF: FPGA: Recv ZSGSRD 36904
17-03-17 18:41:12.478 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.478 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.478 -07 000000512 INF: FPGA: Recv ZSGSRD 36906
17-03-17 18:41:12.488 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.488 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.488 -07 000000626 INF: FPGA: Recv ZSGSRD 36907
17-03-17 18:41:12.498 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.498 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:12.498 -07 000000512 INF: FPGA: Recv ZSGSRD 36909
17-03-17 18:41:12.508 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.508 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:12.508 -07 000000431 INF: FPGA: Recv ZPIEZORD 33187
17-03-17 18:41:12.518 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:12.518 -07 000000551 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -8.2 V.
17-03-17 18:41:12.518 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36906 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36906 (-176.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36901 (-176.5 uncal um), Max = 36913 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:12.518 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36906, posNoise = 7, negNoise = 5
17-03-17 18:41:12.518 -07 000000551 INF: Z Motor: After move to -0.177409, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:12.518 -07 000000551 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-17 18:41:12.518 -07 000000551 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:12.568 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 18:41:12.568 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:12.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:12.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:12.578 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:12.578 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:12.578 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:12.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:12.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:12.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:12.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:12.578 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:12.588 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:12.588 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:12.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:12.638 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:12.838 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:12.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:12.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:12.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:41:12.878 -07 000000431 INF: FPGA: Recv @CAMSNAP 283
17-03-17 18:41:12.878 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:12.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 288 ms overall
17-03-17 18:41:12.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 18:41:12.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:12.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:12.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:41:12.978 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:12.978 -07 000000569 INF: Autofocus start
17-03-17 18:41:12.978 -07 000000569 INF: MeasureProfile start
17-03-17 18:41:12.978 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:12.988 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:12.988 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:12.988 -07 000000569 INF: MeasureProfile done
17-03-17 18:41:12.988 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:41:12.988 -07 000000569 INF: Autofocus finished
17-03-17 18:41:13.188 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:13.188 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:13.198 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.177415325314965. ----------
17-03-17 18:41:13.198 -07 000000610 INF: Cycle	16	Tile	6	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:13.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37288, sync = True, waitForSettling = True)
17-03-17 18:41:13.198 -07 000000610 INF: Z Motor: Moving to -0.170694 mm, started at -0.177415 mm, distance = 6.72 um
17-03-17 18:41:13.198 -07 000000610 INF: FPGA: Xmit ZDACW 37288\n [Z Motor]
17-03-17 18:41:13.198 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:41:13.208 -07 000000610 INF: FPGA: 'ZDACW 37288' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:13.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:13.208 -07 000000551 INF: FPGA: Recv ZDACR 37288
17-03-17 18:41:13.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:13.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35855
17-03-17 18:41:13.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:13.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.378 -07 000000551 INF: FPGA: Recv ZSGSRD 35861
17-03-17 18:41:13.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.388 -07 000000626 INF: FPGA: Recv ZSGSRD 35865
17-03-17 18:41:13.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.398 -07 000000512 INF: FPGA: Recv ZSGSRD 35862
17-03-17 18:41:13.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.408 -07 000000569 INF: FPGA: Recv ZSGSRD 35865
17-03-17 18:41:13.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.418 -07 000000512 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:41:13.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.428 -07 000000569 INF: FPGA: Recv ZSGSRD 35861
17-03-17 18:41:13.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.438 -07 000000551 INF: FPGA: Recv ZSGSRD 35865
17-03-17 18:41:13.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.448 -07 000000626 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:41:13.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:13.458 -07 000000551 INF: FPGA: Recv ZSGSRD 35864
17-03-17 18:41:13.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:13.468 -07 000000626 INF: FPGA: Recv ZPIEZORD 31774
17-03-17 18:41:13.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:13.478 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -9.0 V.
17-03-17 18:41:13.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35861 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35862 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35855 (-169.8 uncal um), Max = 35865 (-169.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:41:13.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35861, posNoise = 4, negNoise = 6
17-03-17 18:41:13.478 -07 000000610 INF: Z Motor: After move to -0.170694, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:13.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:41:13.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:13.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:13.478 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:13.478 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:13.478 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:13.478 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:13.478 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:13.478 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:13.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:13.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:13.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:13.478 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:13.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:13.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:13.488 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:13.488 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:13.488 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:41:13.488 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:41:13.498 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:41:13.498 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:13.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37464 150\n [Camera]
17-03-17 18:41:13.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:14.098 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:41:14.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:41:14.098 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:14.098 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:14.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:41:14.098 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:41:14.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:41:14.098 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:14.098 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:14.098 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:41:14.288 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37464 779
17-03-17 18:41:14.428 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:14.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:41:14.468 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:14.468 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:14.468 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:41:14.478 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:41:14.478 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:14.478 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:14.478 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:41:14.478 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:14.488 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:41:14.618 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:14.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:14.628 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:14.628 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:14.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:41:14.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:14.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:14.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:14.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:14.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:41:14.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:41:14.818 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:14.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37464 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-17 18:41:14.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:14.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170702023626825. ------
17-03-17 18:41:14.938 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:14.938 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17716 mm
17-03-17 18:41:14.938 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:14.938 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:14.938 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38701, sync = True, waitForSettling = False)
17-03-17 18:41:14.938 -07 000000438 INF: Z Motor: Moving to -0.177162 mm, started at -0.170702 mm, distance = -6.46 um
17-03-17 18:41:14.938 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:41:14.938 -07 000000626 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:41:14.948 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 115 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 18:41:14.948 -07 000000438 INF: FPGA: Xmit ZDACW 38701\n [Z Motor]
17-03-17 18:41:14.948 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:41:14.958 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:14.958 -07 000000438 INF: FPGA: 'ZDACW 38701' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:41:14.958 -07 000000561 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:41:14.968 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:14.968 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:41:14.968 -07 000000626 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:14.968 -07 000000626 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:14.968 -07 000000626 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:41:14.978 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:14.978 -07 000000012 INF: FPGA: Recv ZDACR 38701
17-03-17 18:41:14.988 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:14.988 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:14.988 -07 000000438 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:41:15.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:41:15.018 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:41:15.018 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:15.018 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:41:15.018 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:41:15.018 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:15.018 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:15.018 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:41:15.018 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:41:15.028 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:41:15.168 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:15.168 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:41:15.358 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:41:15.358 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:41:15.398 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:15.398 -07 000000438 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:41:15.408 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:15.408 -07 000000626 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:15.408 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:41:15.408 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.835 mm, average velocity = 2.125 mm/sec
17-03-17 18:41:16.248 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.008536,
17-03-17 18:41:16.358 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:16.358 -07 000000438 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:41:16.368 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:16.368 -07 000000626 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:16.388 -07 000000626 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:16.388 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:16.388 -07 000000626 INF: Y Motor: Moved to 64.8794 after 1446 ms (table move)
17-03-17 18:41:16.388 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177162 mm (DAC = 38701)
17-03-17 18:41:16.388 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.388 -07 000000512 INF: FPGA: Recv ZSGSRD 36869
17-03-17 18:41:16.398 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:16.398 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.398 -07 000000476 INF: FPGA: Recv ZSGSRD 36862
17-03-17 18:41:16.408 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.408 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.408 -07 000000626 INF: FPGA: Recv ZSGSRD 36863
17-03-17 18:41:16.418 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.418 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.418 -07 000000476 INF: FPGA: Recv ZSGSRD 36866
17-03-17 18:41:16.428 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.428 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36873
17-03-17 18:41:16.438 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.438 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36870
17-03-17 18:41:16.448 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.448 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.448 -07 000000431 INF: FPGA: Recv ZSGSRD 36869
17-03-17 18:41:16.458 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.458 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.458 -07 000000431 INF: FPGA: Recv ZSGSRD 36867
17-03-17 18:41:16.468 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.468 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.468 -07 000000475 INF: FPGA: Recv ZSGSRD 36862
17-03-17 18:41:16.478 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.478 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:16.478 -07 000000475 INF: FPGA: Recv ZSGSRD 36863
17-03-17 18:41:16.488 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.488 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:16.488 -07 000000626 INF: FPGA: Recv ZPIEZORD 33106
17-03-17 18:41:16.498 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:16.498 -07 000000551 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.905 V. Piezo Error = -8.3 V.
17-03-17 18:41:16.498 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36866 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36866 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36862 (-176.2 uncal um), Max = 36873 (-176.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:41:16.498 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36866, posNoise = 7, negNoise = 4
17-03-17 18:41:16.498 -07 000000551 INF: Z Motor: After move to -0.177162, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:16.498 -07 000000551 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:41:16.498 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:16.548 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:41:16.548 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:16.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:16.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:16.548 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:16.548 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:16.548 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:16.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:16.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:16.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:16.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:16.558 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:16.558 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:16.558 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:16.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:16.618 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:16.618 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:16.818 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:16.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:16.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:16.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:41:16.858 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:16.858 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:16.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 292 ms overall
17-03-17 18:41:16.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:41:16.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:16.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:16.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:41:16.958 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:16.958 -07 000000438 INF: Autofocus start
17-03-17 18:41:16.958 -07 000000438 INF: MeasureProfile start
17-03-17 18:41:16.958 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:16.968 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:16.968 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:16.978 -07 000000438 INF: MeasureProfile done
17-03-17 18:41:16.978 -07 000000438 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:41:16.978 -07 000000438 INF: Autofocus finished
17-03-17 18:41:17.168 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:17.168 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:41:17.178 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.177158356829294. ----------
17-03-17 18:41:17.178 -07 000000610 INF: Cycle	16	Tile	7	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:17.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37181, sync = True, waitForSettling = True)
17-03-17 18:41:17.178 -07 000000610 INF: Z Motor: Moving to -0.170204 mm, started at -0.177158 mm, distance = 6.95 um
17-03-17 18:41:17.178 -07 000000610 INF: FPGA: Xmit ZDACW 37181\n [Z Motor]
17-03-17 18:41:17.178 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:41:17.188 -07 000000610 INF: FPGA: 'ZDACW 37181' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:17.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:17.188 -07 000000431 INF: FPGA: Recv ZDACR 37181
17-03-17 18:41:17.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:17.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.348 -07 000000438 INF: FPGA: Recv ZSGSRD 35787
17-03-17 18:41:17.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.358 -07 000000561 INF: FPGA: Recv ZSGSRD 35791
17-03-17 18:41:17.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:41:17.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.378 -07 000000561 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:41:17.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.388 -07 000000462 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:41:17.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.398 -07 000000512 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:41:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:41:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.418 -07 000000561 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:41:17.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.428 -07 000000438 INF: FPGA: Recv ZSGSRD 35783
17-03-17 18:41:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:17.438 -07 000000561 INF: FPGA: Recv ZSGSRD 35784
17-03-17 18:41:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:17.448 -07 000000431 INF: FPGA: Recv ZPIEZORD 31656
17-03-17 18:41:17.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:17.458 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -9.1 V.
17-03-17 18:41:17.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35786 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35786 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35782 (-169.3 uncal um), Max = 35791 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:41:17.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35786, posNoise = 5, negNoise = 4
17-03-17 18:41:17.458 -07 000000610 INF: Z Motor: After move to -0.170204, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:17.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:41:17.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:17.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:17.458 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:17.458 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:17.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:17.458 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:17.458 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:17.458 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:17.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:17.458 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:17.458 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:17.458 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:17.458 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:17.468 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:17.468 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:41:17.468 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:17.478 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:41:17.478 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:17.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:41:17.478 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:17.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37358 150\n [Camera]
17-03-17 18:41:17.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:41:18.068 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:18.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:18.068 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:18.078 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:18.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:18.078 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:18.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:41:18.078 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:18.078 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:18.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:41:18.268 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37358 779
17-03-17 18:41:18.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:18.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:41:18.448 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:41:18.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:18.448 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:41:18.458 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:41:18.458 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:18.458 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:18.458 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:41:18.458 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:18.468 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:41:18.598 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:18.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:18.608 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:18.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:18.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:18.608 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:18.728 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:18.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) start.
17-03-17 18:41:18.728 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:18.728 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:41:18.798 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:18.798 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:18.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37358 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:41:18.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:18.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.170220207716193. ------
17-03-17 18:41:18.798 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17676 mm
17-03-17 18:41:18.798 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:18.798 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:18.808 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:18.808 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:41:18.808 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38613, sync = True, waitForSettling = False)
17-03-17 18:41:18.808 -07 000000475 INF: Z Motor: Moving to -0.176759 mm, started at -0.170220 mm, distance = -6.54 um
17-03-17 18:41:18.808 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:18.808 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:41:18.808 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:41:18.818 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:18.818 -07 000000569 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:41:18.828 -07 000000475 INF: FPGA: Xmit ZDACW 38613\n [Z Motor]
17-03-17 18:41:18.828 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:41:18.828 -07 000000626 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:18.828 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:41:18.828 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:18.828 -07 000000626 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:41:18.838 -07 000000475 INF: FPGA: 'ZDACW 38613' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:41:18.838 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:18.838 -07 000000541 INF: FPGA: Recv ZDACR 38613
17-03-17 18:41:18.848 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:18.848 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:18.848 -07 000000475 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:41:19.008 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:19.008 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:41:19.098 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:41:19.098 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:41:19.098 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:19.108 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:19.108 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:41:19.108 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:19.108 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:19.108 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:19.108 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 18:41:19.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 18:41:19.218 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:41:19.218 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:41:19.258 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:19.258 -07 000000438 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:41:19.268 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:19.268 -07 000000626 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:19.268 -07 000000626 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:41:19.268 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 18:41:20.218 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:20.218 -07 000000569 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:41:20.228 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:20.228 -07 000000626 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:20.248 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:20.248 -07 000000626 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:20.248 -07 000000626 INF: Y Motor: Moved to 65.7148 after 1436 ms (table move)
17-03-17 18:41:20.248 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176759 mm (DAC = 38613)
17-03-17 18:41:20.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.248 -07 000000541 INF: FPGA: Recv ZSGSRD 36807
17-03-17 18:41:20.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:20.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.258 -07 000000541 INF: FPGA: Recv ZSGSRD 36809
17-03-17 18:41:20.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.268 -07 000000431 INF: FPGA: Recv ZSGSRD 36805
17-03-17 18:41:20.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.278 -07 000000475 INF: FPGA: Recv ZSGSRD 36798
17-03-17 18:41:20.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.288 -07 000000431 INF: FPGA: Recv ZSGSRD 36802
17-03-17 18:41:20.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.298 -07 000000431 INF: FPGA: Recv ZSGSRD 36812
17-03-17 18:41:20.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.308 -07 000000462 INF: FPGA: Recv ZSGSRD 36811
17-03-17 18:41:20.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.318 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.318 -07 000000431 INF: FPGA: Recv ZSGSRD 36797
17-03-17 18:41:20.328 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.328 -07 000000541 INF: FPGA: Recv ZSGSRD 36802
17-03-17 18:41:20.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.338 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:20.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36801
17-03-17 18:41:20.348 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.348 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:20.348 -07 000000541 INF: FPGA: Recv ZPIEZORD 33064
17-03-17 18:41:20.358 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:20.358 -07 000000561 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -8.3 V.
17-03-17 18:41:20.358 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36804 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36804 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36797 (-175.8 uncal um), Max = 36812 (-175.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:41:20.358 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36804, posNoise = 8, negNoise = 7
17-03-17 18:41:20.358 -07 000000561 INF: Z Motor: After move to -0.176759, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:20.358 -07 000000561 INF: Z Motor: Settle wait time = 1441 ms, measure time = 106 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:41:20.358 -07 000000561 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:20.408 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:41:20.408 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:20.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:20.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:20.418 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:20.418 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:20.418 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:20.418 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:20.418 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:20.418 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:20.418 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:20.418 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:20.428 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:20.428 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:20.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:20.478 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:20.668 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:20.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:20.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:20.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 18:41:20.708 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:20.708 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:20.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:41:20.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:41:20.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:20.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:20.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:41:20.818 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:20.818 -07 000000438 INF: Autofocus start
17-03-17 18:41:20.818 -07 000000438 INF: MeasureProfile start
17-03-17 18:41:20.818 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:20.828 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:41:20.828 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:20.828 -07 000000438 INF: MeasureProfile done
17-03-17 18:41:20.828 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:41:20.828 -07 000000438 INF: Autofocus finished
17-03-17 18:41:21.028 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:21.028 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:21.028 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176760055676505. ----------
17-03-17 18:41:21.028 -07 000000610 INF: Cycle	16	Tile	8	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:21.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37110, sync = True, waitForSettling = True)
17-03-17 18:41:21.038 -07 000000610 INF: Z Motor: Moving to -0.169879 mm, started at -0.176760 mm, distance = 6.88 um
17-03-17 18:41:21.038 -07 000000610 INF: FPGA: Xmit ZDACW 37110\n [Z Motor]
17-03-17 18:41:21.038 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:41:21.048 -07 000000610 INF: FPGA: 'ZDACW 37110' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:21.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:21.048 -07 000000476 INF: FPGA: Recv ZDACR 37110
17-03-17 18:41:21.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.208 -07 000000012 INF: FPGA: Recv ZSGSRD 35734
17-03-17 18:41:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.218 -07 000000480 INF: FPGA: Recv ZSGSRD 35733
17-03-17 18:41:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.228 -07 000000476 INF: FPGA: Recv ZSGSRD 35736
17-03-17 18:41:21.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.238 -07 000000480 INF: FPGA: Recv ZSGSRD 35732
17-03-17 18:41:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.248 -07 000000476 INF: FPGA: Recv ZSGSRD 35737
17-03-17 18:41:21.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.258 -07 000000512 INF: FPGA: Recv ZSGSRD 35734
17-03-17 18:41:21.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.268 -07 000000012 INF: FPGA: Recv ZSGSRD 35739
17-03-17 18:41:21.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.278 -07 000000476 INF: FPGA: Recv ZSGSRD 35733
17-03-17 18:41:21.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.298 -07 000000551 INF: FPGA: Recv ZSGSRD 35740
17-03-17 18:41:21.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:41:21.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:21.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35738
17-03-17 18:41:21.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:21.318 -07 000000551 INF: FPGA: Recv ZPIEZORD 31580
17-03-17 18:41:21.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:21.328 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.2 V.
17-03-17 18:41:21.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35736 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35735 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35732 (-169.0 uncal um), Max = 35740 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:41:21.328 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35736, posNoise = 4, negNoise = 4
17-03-17 18:41:21.328 -07 000000610 INF: Z Motor: After move to -0.169879, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:21.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 18:41:21.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:21.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:21.328 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:21.328 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:21.328 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:21.328 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:21.328 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:21.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:21.328 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:21.328 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:21.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:21.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:21.338 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:21.338 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:21.338 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:41:21.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:21.348 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:41:21.348 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:21.348 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:41:21.348 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:41:21.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37287 150\n [Camera]
17-03-17 18:41:21.548 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:21.608 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.008536,
17-03-17 18:41:21.618 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:21.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:21.948 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:21.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:21.948 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:21.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:21.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:21.948 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:21.948 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:21.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:41:21.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:21.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:41:22.138 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37287 779
17-03-17 18:41:22.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:22.328 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:41:22.328 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:22.328 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:22.338 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:22.338 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:41:22.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:41:22.338 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:41:22.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:22.348 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:41:22.358 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:41:22.478 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:41:22.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:41:22.478 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:22.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:41:22.488 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:22.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:41:22.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:41:22.488 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:22.488 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:22.488 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:41:22.668 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:41:22.668 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:22.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37287 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:41:22.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:22.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169898997109105. ------
17-03-17 18:41:22.678 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17608 mm
17-03-17 18:41:22.678 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:22.678 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:22.678 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:41:22.678 -07 000000551 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:41:22.678 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:22.678 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38464, sync = True, waitForSettling = False)
17-03-17 18:41:22.678 -07 000000431 INF: Z Motor: Moving to -0.176077 mm, started at -0.169899 mm, distance = -6.18 um
17-03-17 18:41:22.688 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:22.688 -07 000000431 INF: FPGA: Xmit ZDACW 38464\n [Z Motor]
17-03-17 18:41:22.688 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:41:22.698 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:22.698 -07 000000431 INF: FPGA: 'ZDACW 38464' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:41:22.698 -07 000000476 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:41:22.708 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:22.708 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:41:22.708 -07 000000551 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:22.708 -07 000000551 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:22.708 -07 000000551 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:41:22.718 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:22.718 -07 000000476 INF: FPGA: Recv ZDACR 38464
17-03-17 18:41:22.728 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:22.728 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:22.728 -07 000000431 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:41:22.868 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:41:22.868 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:41:22.868 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:22.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:41:22.868 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:41:22.868 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:22.868 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:41:22.868 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:41:22.878 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:22.878 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:41:22.908 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:22.908 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:41:23.098 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:41:23.098 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:41:23.138 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:23.138 -07 000000431 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:41:23.148 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:23.148 -07 000000551 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:23.148 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:41:23.148 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-17 18:41:24.098 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:24.098 -07 000000475 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:41:24.108 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:24.108 -07 000000551 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:24.128 -07 000000551 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:24.128 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:41:24.128 -07 000000551 INF: Y Motor: Moved to 66.5400 after 1446 ms (table move)
17-03-17 18:41:24.128 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176077 mm (DAC = 38464)
17-03-17 18:41:24.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.128 -07 000000475 INF: FPGA: Recv ZSGSRD 36702
17-03-17 18:41:24.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:24.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.138 -07 000000476 INF: FPGA: Recv ZSGSRD 36692
17-03-17 18:41:24.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.148 -07 000000431 INF: FPGA: Recv ZSGSRD 36697
17-03-17 18:41:24.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.158 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.158 -07 000000626 INF: FPGA: Recv ZSGSRD 36695
17-03-17 18:41:24.168 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.168 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36699
17-03-17 18:41:24.178 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.178 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.178 -07 000000551 INF: FPGA: Recv ZSGSRD 36694
17-03-17 18:41:24.188 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.188 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.188 -07 000000475 INF: FPGA: Recv ZSGSRD 36700
17-03-17 18:41:24.198 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.198 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.198 -07 000000551 INF: FPGA: Recv ZSGSRD 36696
17-03-17 18:41:24.208 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.208 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.208 -07 000000431 INF: FPGA: Recv ZSGSRD 36696
17-03-17 18:41:24.218 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.218 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:24.218 -07 000000476 INF: FPGA: Recv ZSGSRD 36696
17-03-17 18:41:24.228 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.228 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:24.228 -07 000000431 INF: FPGA: Recv ZPIEZORD 32919
17-03-17 18:41:24.238 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.238 -07 000000512 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.869 V. Piezo Error = -8.4 V.
17-03-17 18:41:24.238 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36697 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36696 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36692 (-175.2 uncal um), Max = 36702 (-175.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:24.238 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36697, posNoise = 5, negNoise = 5
17-03-17 18:41:24.238 -07 000000512 INF: Z Motor: After move to -0.176077, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:24.238 -07 000000512 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:41:24.238 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:24.288 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:41:24.288 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:24.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:24.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:24.288 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:24.288 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:24.288 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:24.288 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:24.288 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:24.288 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:24.298 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:24.298 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:24.298 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:24.298 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:24.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:24.348 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:24.548 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:24.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:24.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:24.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:41:24.588 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:24.598 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:24.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 18:41:24.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:41:24.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:24.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:24.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:41:24.698 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:24.698 -07 000000476 INF: Autofocus start
17-03-17 18:41:24.698 -07 000000476 INF: MeasureProfile start
17-03-17 18:41:24.698 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:24.708 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:24.708 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:24.708 -07 000000476 INF: MeasureProfile done
17-03-17 18:41:24.708 -07 000000476 INF: X=64  Z correction [um]=0.2557664
17-03-17 18:41:24.708 -07 000000476 INF: Autofocus finished
17-03-17 18:41:24.908 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:24.908 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:24.908 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.176072664977337. ----------
17-03-17 18:41:24.918 -07 000000610 INF: Cycle	16	Tile	9	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:24.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37032, sync = True, waitForSettling = True)
17-03-17 18:41:24.918 -07 000000610 INF: Z Motor: Moving to -0.169522 mm, started at -0.176073 mm, distance = 6.55 um
17-03-17 18:41:24.918 -07 000000610 INF: FPGA: Xmit ZDACW 37032\n [Z Motor]
17-03-17 18:41:24.918 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:41:24.928 -07 000000610 INF: FPGA: 'ZDACW 37032' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:24.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:24.928 -07 000000569 INF: FPGA: Recv ZDACR 37032
17-03-17 18:41:24.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:24.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:25.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35673
17-03-17 18:41:25.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.098 -07 000000476 INF: FPGA: Recv ZSGSRD 35681
17-03-17 18:41:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.108 -07 000000512 INF: FPGA: Recv ZSGSRD 35682
17-03-17 18:41:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.118 -07 000000431 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:41:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.128 -07 000000012 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:41:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.138 -07 000000476 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:41:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.148 -07 000000012 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:41:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.158 -07 000000512 INF: FPGA: Recv ZSGSRD 35681
17-03-17 18:41:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.168 -07 000000012 INF: FPGA: Recv ZSGSRD 35671
17-03-17 18:41:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:25.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35676
17-03-17 18:41:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:25.188 -07 000000012 INF: FPGA: Recv ZPIEZORD 31571
17-03-17 18:41:25.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:25.198 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.1 V.
17-03-17 18:41:25.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35678 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35671 (-168.6 uncal um), Max = 35684 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:41:25.198 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 6, negNoise = 7
17-03-17 18:41:25.198 -07 000000610 INF: Z Motor: After move to -0.169522, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:25.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:41:25.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:25.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:25.198 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:25.198 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:25.198 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:25.198 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:25.198 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:25.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:25.198 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:25.198 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:25.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:25.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:25.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:41:25.208 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:25.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:25.208 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:25.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:41:25.218 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:41:25.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:41:25.218 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:41:25.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37209 150\n [Camera]
17-03-17 18:41:25.418 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:25.818 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:25.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:25.818 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:25.818 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:25.818 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:41:25.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:25.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:25.818 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:25.818 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:25.818 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:41:26.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37209 779
17-03-17 18:41:26.158 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:26.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:41:26.188 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:41:26.188 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:26.188 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:41:26.188 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:41:26.188 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:26.198 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:41:26.198 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:41:26.198 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:26.208 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:41:26.348 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:26.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:26.348 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:26.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:26.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:26.458 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:26.458 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:26.458 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:41:26.468 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:26.468 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:41:26.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:41:26.538 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:26.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37209 150' command took 2 ms to send, 1314 ms to get response, and 1318 ms overall
17-03-17 18:41:26.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:26.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.169526392804882. ------
17-03-17 18:41:26.548 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17640 mm
17-03-17 18:41:26.548 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:26.548 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:26.548 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38534, sync = True, waitForSettling = False)
17-03-17 18:41:26.548 -07 000000476 INF: Z Motor: Moving to -0.176397 mm, started at -0.169526 mm, distance = -6.87 um
17-03-17 18:41:26.548 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:26.548 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:41:26.548 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:41:26.558 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:26.558 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:26.558 -07 000000569 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:41:26.568 -07 000000476 INF: FPGA: Xmit ZDACW 38534\n [Z Motor]
17-03-17 18:41:26.568 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:41:26.568 -07 000000626 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:26.568 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:26.568 -07 000000626 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:41:26.568 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:41:26.578 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:26.578 -07 000000476 INF: FPGA: 'ZDACW 38534' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:41:26.588 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:26.598 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:26.598 -07 000000512 INF: FPGA: Recv ZDACR 38534
17-03-17 18:41:26.608 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:26.608 -07 000000476 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:41:26.618 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:26.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:26.778 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:26.778 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:41:26.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:41:26.838 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:41:26.838 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:26.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:41:26.848 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:41:26.848 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:26.848 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:26.848 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:26.848 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 18:41:26.858 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:41:26.958 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:41:26.958 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:41:26.978 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.983999,
17-03-17 18:41:27.008 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:27.008 -07 000000512 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:41:27.018 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:41:27.018 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:27.018 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:41:27.018 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.133 mm/sec
17-03-17 18:41:27.968 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:27.968 -07 000000480 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:41:27.978 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:27.978 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:27.998 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:27.998 -07 000000626 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:27.998 -07 000000626 INF: Y Motor: Moved to 67.3726 after 1445 ms (table move)
17-03-17 18:41:27.998 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176397 mm (DAC = 38534)
17-03-17 18:41:27.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.008 -07 000000512 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:41:28.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:41:28.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.008 -07 000000626 INF: FPGA: Recv ZSGSRD 36745
17-03-17 18:41:28.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:28.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.018 -07 000000569 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:41:28.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.028 -07 000000501 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:41:28.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.038 -07 000000512 INF: FPGA: Recv ZSGSRD 36750
17-03-17 18:41:28.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.048 -07 000000501 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:41:28.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.058 -07 000000012 INF: FPGA: Recv ZSGSRD 36745
17-03-17 18:41:28.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.068 -07 000000501 INF: FPGA: Recv ZSGSRD 36745
17-03-17 18:41:28.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36741
17-03-17 18:41:28.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.088 -07 000000501 INF: FPGA: Recv ZSGSRD 36746
17-03-17 18:41:28.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.098 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:28.098 -07 000000480 INF: FPGA: Recv ZPIEZORD 32990
17-03-17 18:41:28.108 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.108 -07 000000431 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.3 V.
17-03-17 18:41:28.108 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36748 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36748 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36741 (-175.5 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:41:28.108 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36748, posNoise = 4, negNoise = 7
17-03-17 18:41:28.108 -07 000000431 INF: Z Motor: After move to -0.176397, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:28.108 -07 000000431 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:41:28.108 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:28.158 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:41:28.158 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:28.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:28.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:28.158 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:28.158 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:28.158 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:28.158 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:28.168 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:41:28.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:28.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:28.168 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:28.178 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:28.178 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:41:28.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:28.228 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:28.428 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:28.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:28.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:28.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-17 18:41:28.468 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:28.468 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:28.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 18:41:28.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:41:28.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:28.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:28.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:41:28.568 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:28.568 -07 000000512 INF: Autofocus start
17-03-17 18:41:28.568 -07 000000512 INF: MeasureProfile start
17-03-17 18:41:28.568 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:28.578 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:28.578 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:28.588 -07 000000512 INF: MeasureProfile done
17-03-17 18:41:28.588 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:41:28.588 -07 000000512 INF: Autofocus finished
17-03-17 18:41:28.778 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:28.778 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:28.778 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176400299796567. ----------
17-03-17 18:41:28.778 -07 000000610 INF: Cycle	16	Tile	10	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:28.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37049, sync = True, waitForSettling = True)
17-03-17 18:41:28.788 -07 000000610 INF: Z Motor: Moving to -0.169599 mm, started at -0.176400 mm, distance = 6.80 um
17-03-17 18:41:28.788 -07 000000610 INF: FPGA: Xmit ZDACW 37049\n [Z Motor]
17-03-17 18:41:28.788 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:41:28.798 -07 000000610 INF: FPGA: 'ZDACW 37049' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:28.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:28.798 -07 000000626 INF: FPGA: Recv ZDACR 37049
17-03-17 18:41:28.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35689
17-03-17 18:41:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.968 -07 000000480 INF: FPGA: Recv ZSGSRD 35691
17-03-17 18:41:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.978 -07 000000501 INF: FPGA: Recv ZSGSRD 35691
17-03-17 18:41:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.988 -07 000000480 INF: FPGA: Recv ZSGSRD 35686
17-03-17 18:41:28.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:28.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35691
17-03-17 18:41:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:29.008 -07 000000431 INF: FPGA: Recv ZSGSRD 35689
17-03-17 18:41:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:29.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:29.018 -07 000000480 INF: FPGA: Recv ZSGSRD 35691
17-03-17 18:41:29.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:29.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:29.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35690
17-03-17 18:41:29.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:29.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:29.038 -07 000000512 INF: FPGA: Recv ZSGSRD 35690
17-03-17 18:41:29.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:29.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:29.048 -07 000000431 INF: FPGA: Recv ZSGSRD 35694
17-03-17 18:41:29.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:29.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:29.058 -07 000000512 INF: FPGA: Recv ZPIEZORD 31568
17-03-17 18:41:29.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:29.068 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.1 V.
17-03-17 18:41:29.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35690 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35690 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35686 (-168.7 uncal um), Max = 35694 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:41:29.068 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35690, posNoise = 4, negNoise = 4
17-03-17 18:41:29.068 -07 000000610 INF: Z Motor: After move to -0.169599, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:29.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:41:29.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:29.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:29.068 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:29.068 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:29.068 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:29.068 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:29.068 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:29.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:29.068 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:41:29.068 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:29.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:29.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:29.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:41:29.078 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:29.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:29.078 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:29.088 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:41:29.088 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:29.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:41:29.088 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:41:29.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37226 150\n [Camera]
17-03-17 18:41:29.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:29.688 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:41:29.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:41:29.688 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:29.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:41:29.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:41:29.688 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:29.688 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:29.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:41:29.808 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:29.808 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:41:29.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37226 779
17-03-17 18:41:30.028 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:30.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:41:30.078 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:41:30.078 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:30.078 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:30.078 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:41:30.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:41:30.178 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 18:41:30.178 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:30.178 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:30.188 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 18:41:30.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:30.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:30.218 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:30.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:30.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:30.218 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:30.228 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:30.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:41:30.228 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:30.228 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:41:30.408 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:30.408 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:30.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37226 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-17 18:41:30.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:30.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169603483350584. ------
17-03-17 18:41:30.418 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:30.418 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17547 mm
17-03-17 18:41:30.418 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:30.418 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:30.418 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:41:30.418 -07 000000551 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:41:30.418 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38331, sync = True, waitForSettling = False)
17-03-17 18:41:30.418 -07 000000561 INF: Z Motor: Moving to -0.175468 mm, started at -0.169603 mm, distance = -5.86 um
17-03-17 18:41:30.428 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:30.428 -07 000000561 INF: FPGA: Xmit ZDACW 38331\n [Z Motor]
17-03-17 18:41:30.428 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:41:30.438 -07 000000561 INF: FPGA: 'ZDACW 38331' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:30.438 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:30.438 -07 000000476 INF: FPGA: Recv ZDACR 38331
17-03-17 18:41:30.448 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:30.448 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:30.448 -07 000000561 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 18:41:30.458 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:30.458 -07 000000382 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:41:30.468 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 41 ms overall
17-03-17 18:41:30.468 -07 000000551 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:30.468 -07 000000551 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:30.468 -07 000000551 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:41:30.468 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:30.608 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:41:30.608 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:41:30.608 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:30.608 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:30.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:41:30.608 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:41:30.608 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:30.618 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:30.618 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:41:30.618 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:41:30.648 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:30.648 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:41:30.848 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:41:30.848 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 378 ms overall
17-03-17 18:41:30.878 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:30.888 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:41:30.888 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:30.888 -07 000000551 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:30.888 -07 000000551 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:41:30.888 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.222 mm/sec
17-03-17 18:41:31.618 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:31.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:31.838 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:31.838 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:41:31.848 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:31.848 -07 000000551 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:31.858 -07 000000551 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:31.868 -07 000000551 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:31.868 -07 000000551 INF: Y Motor: Moved to 68.2056 after 1441 ms (table move)
17-03-17 18:41:31.868 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175468 mm (DAC = 38331)
17-03-17 18:41:31.868 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.868 -07 000000476 INF: FPGA: Recv ZSGSRD 36604
17-03-17 18:41:31.878 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:31.878 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.878 -07 000000480 INF: FPGA: Recv ZSGSRD 36601
17-03-17 18:41:31.888 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.888 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.888 -07 000000462 INF: FPGA: Recv ZSGSRD 36606
17-03-17 18:41:31.898 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.898 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.898 -07 000000382 INF: FPGA: Recv ZSGSRD 36605
17-03-17 18:41:31.908 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.908 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.908 -07 000000501 INF: FPGA: Recv ZSGSRD 36604
17-03-17 18:41:31.918 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.918 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.918 -07 000000448 INF: FPGA: Recv ZSGSRD 36608
17-03-17 18:41:31.928 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.928 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.928 -07 000000561 INF: FPGA: Recv ZSGSRD 36606
17-03-17 18:41:31.938 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.938 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.938 -07 000000475 INF: FPGA: Recv ZSGSRD 36601
17-03-17 18:41:31.948 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.948 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36602
17-03-17 18:41:31.958 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.958 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:31.958 -07 000000623 INF: FPGA: Recv ZSGSRD 36602
17-03-17 18:41:31.968 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.968 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:31.968 -07 000000541 INF: FPGA: Recv ZPIEZORD 32802
17-03-17 18:41:31.978 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:31.978 -07 000000512 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.4 V.
17-03-17 18:41:31.978 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36604 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36604 (-174.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36601 (-174.6 uncal um), Max = 36608 (-174.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:41:31.978 -07 000000512 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36604, posNoise = 4, negNoise = 3
17-03-17 18:41:31.978 -07 000000512 INF: Z Motor: After move to -0.175468, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:31.978 -07 000000512 INF: Z Motor: Settle wait time = 1443 ms, measure time = 108 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:41:31.978 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:32.028 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:41:32.028 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:32.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:32.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:32.038 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:32.038 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:32.038 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:32.038 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:32.038 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:32.038 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:32.038 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:32.038 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:32.048 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:32.048 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:32.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:32.098 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:32.298 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:32.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:32.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:32.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-17 18:41:32.328 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:32.328 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:32.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:41:32.358 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.999021,
17-03-17 18:41:32.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:41:32.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:32.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:32.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:41:32.528 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:32.528 -07 000000512 INF: Autofocus start
17-03-17 18:41:32.528 -07 000000512 INF: MeasureProfile start
17-03-17 18:41:32.528 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:32.538 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:32.538 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:32.538 -07 000000512 INF: MeasureProfile done
17-03-17 18:41:32.538 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:41:32.538 -07 000000512 INF: Autofocus finished
17-03-17 18:41:32.738 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:32.738 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:32.738 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175475213248153. ----------
17-03-17 18:41:32.738 -07 000000610 INF: Cycle	16	Tile	11	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:32.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36828, sync = True, waitForSettling = True)
17-03-17 18:41:32.748 -07 000000610 INF: Z Motor: Moving to -0.168588 mm, started at -0.175475 mm, distance = 6.89 um
17-03-17 18:41:32.748 -07 000000610 INF: FPGA: Xmit ZDACW 36828\n [Z Motor]
17-03-17 18:41:32.748 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:41:32.758 -07 000000610 INF: FPGA: 'ZDACW 36828' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:32.758 -07 000000382 INF: FPGA: Recv ZDACR 36828
17-03-17 18:41:32.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:32.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.918 -07 000000476 INF: FPGA: Recv ZSGSRD 35532
17-03-17 18:41:32.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:32.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35534
17-03-17 18:41:32.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.938 -07 000000476 INF: FPGA: Recv ZSGSRD 35530
17-03-17 18:41:32.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.948 -07 000000382 INF: FPGA: Recv ZSGSRD 35534
17-03-17 18:41:32.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.958 -07 000000512 INF: FPGA: Recv ZSGSRD 35535
17-03-17 18:41:32.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.968 -07 000000476 INF: FPGA: Recv ZSGSRD 35533
17-03-17 18:41:32.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.978 -07 000000012 INF: FPGA: Recv ZSGSRD 35529
17-03-17 18:41:32.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35537
17-03-17 18:41:32.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:32.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:32.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35537
17-03-17 18:41:33.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:33.008 -07 000000541 INF: FPGA: Recv ZSGSRD 35535
17-03-17 18:41:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:33.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:33.018 -07 000000382 INF: FPGA: Recv ZPIEZORD 31360
17-03-17 18:41:33.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:33.028 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.2 V.
17-03-17 18:41:33.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35534 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35534 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35529 (-167.7 uncal um), Max = 35537 (-167.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:33.028 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35534, posNoise = 3, negNoise = 5
17-03-17 18:41:33.028 -07 000000610 INF: Z Motor: After move to -0.168588, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:33.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:41:33.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:33.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:33.028 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:33.028 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:33.028 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:33.028 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:33.028 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:33.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:33.028 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:33.028 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:33.028 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:33.028 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:33.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:33.038 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:33.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 18:41:33.038 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:33.048 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:41:33.048 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:33.048 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:41:33.048 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:41:33.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37004 150\n [Camera]
17-03-17 18:41:33.248 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:33.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:33.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:33.638 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:33.638 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:33.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:41:33.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:33.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:33.648 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:33.648 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:33.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:41:33.838 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37004 779
17-03-17 18:41:33.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:41:34.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:41:34.018 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:41:34.018 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:34.018 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:41:34.018 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:41:34.018 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:34.028 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:34.028 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:41:34.028 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:34.038 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:41:34.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:34.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:34.178 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:34.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:34.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:34.178 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:34.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:41:34.178 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:34.178 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:34.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:41:34.368 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:34.368 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:34.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37004 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:41:34.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:34.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168601306256469. ------
17-03-17 18:41:34.368 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:34.368 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17516 mm
17-03-17 18:41:34.368 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:34.378 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:34.378 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:41:34.378 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:34.378 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:41:34.378 -07 000000541 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:41:34.378 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38264, sync = True, waitForSettling = False)
17-03-17 18:41:34.378 -07 000000561 INF: Z Motor: Moving to -0.175161 mm, started at -0.168601 mm, distance = -6.56 um
17-03-17 18:41:34.388 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:34.388 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:41:34.398 -07 000000561 INF: FPGA: Xmit ZDACW 38264\n [Z Motor]
17-03-17 18:41:34.398 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:41:34.398 -07 000000541 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:34.398 -07 000000541 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:34.398 -07 000000541 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:41:34.398 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:41:34.408 -07 000000561 INF: FPGA: 'ZDACW 38264' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:41:34.408 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:34.418 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:34.418 -07 000000501 INF: FPGA: Recv ZDACR 38264
17-03-17 18:41:34.428 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:41:34.428 -07 000000561 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:41:34.558 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:41:34.558 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:41:34.558 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:34.558 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:41:34.558 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:41:34.558 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:34.558 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:34.568 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:34.568 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:41:34.568 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:41:34.578 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:34.578 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:41:34.788 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:41:34.788 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 18:41:34.818 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:34.818 -07 000000476 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:41:34.828 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:34.828 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:34.828 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:41:34.828 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.837 mm, average velocity = 2.146 mm/sec
17-03-17 18:41:35.778 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:35.778 -07 000000561 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:41:35.788 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:35.788 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:35.808 -07 000000541 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:35.808 -07 000000541 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:35.808 -07 000000541 INF: Y Motor: Moved to 69.0278 after 1429 ms (table move)
17-03-17 18:41:35.808 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175161 mm (DAC = 38264)
17-03-17 18:41:35.808 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.808 -07 000000501 INF: FPGA: Recv ZSGSRD 36559
17-03-17 18:41:35.818 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:35.818 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.818 -07 000000476 INF: FPGA: Recv ZSGSRD 36552
17-03-17 18:41:35.828 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.828 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.828 -07 000000561 INF: FPGA: Recv ZSGSRD 36561
17-03-17 18:41:35.838 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.838 -07 000000541 INF: FPGA: Recv ZSGSRD 36557
17-03-17 18:41:35.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.848 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.848 -07 000000382 INF: FPGA: Recv ZSGSRD 36552
17-03-17 18:41:35.858 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.858 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.858 -07 000000512 INF: FPGA: Recv ZSGSRD 36563
17-03-17 18:41:35.868 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.868 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.868 -07 000000561 INF: FPGA: Recv ZSGSRD 36563
17-03-17 18:41:35.878 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.878 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.878 -07 000000512 INF: FPGA: Recv ZSGSRD 36556
17-03-17 18:41:35.888 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.888 -07 000000382 INF: FPGA: Recv ZSGSRD 36560
17-03-17 18:41:35.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:35.898 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:35.898 -07 000000462 INF: FPGA: Recv ZSGSRD 36555
17-03-17 18:41:35.908 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.908 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:35.908 -07 000000512 INF: FPGA: Recv ZPIEZORD 32732
17-03-17 18:41:35.918 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:35.918 -07 000000569 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.839 V. Piezo Error = -8.5 V.
17-03-17 18:41:35.918 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36558 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36558 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36552 (-174.3 uncal um), Max = 36563 (-174.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:41:35.918 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36558, posNoise = 5, negNoise = 6
17-03-17 18:41:35.918 -07 000000569 INF: Z Motor: After move to -0.175161, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:35.918 -07 000000569 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:41:35.918 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:35.968 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:41:35.968 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:35.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:35.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:35.968 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:35.968 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:35.968 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:35.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:35.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:35.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:35.978 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:35.978 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:35.988 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:35.988 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:41:35.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:36.028 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:36.228 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:36.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:36.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:36.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2609049928, 0x0, 559484976) start.
17-03-17 18:41:36.268 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:36.268 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:36.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:41:36.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2609049928, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:41:36.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:36.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:36.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:41:36.468 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:36.468 -07 000000462 INF: Autofocus start
17-03-17 18:41:36.468 -07 000000462 INF: MeasureProfile start
17-03-17 18:41:36.468 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:36.478 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:36.478 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:36.488 -07 000000462 INF: MeasureProfile done
17-03-17 18:41:36.488 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:41:36.488 -07 000000462 INF: Autofocus finished
17-03-17 18:41:36.618 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:36.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:36.678 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:36.678 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:41:36.688 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175179699489632. ----------
17-03-17 18:41:36.688 -07 000000610 INF: Cycle	16	Tile	12	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:36.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36797, sync = True, waitForSettling = True)
17-03-17 18:41:36.688 -07 000000610 INF: Z Motor: Moving to -0.168446 mm, started at -0.175180 mm, distance = 6.73 um
17-03-17 18:41:36.688 -07 000000610 INF: FPGA: Xmit ZDACW 36797\n [Z Motor]
17-03-17 18:41:36.688 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:41:36.698 -07 000000610 INF: FPGA: 'ZDACW 36797' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:36.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:36.698 -07 000000541 INF: FPGA: Recv ZDACR 36797
17-03-17 18:41:36.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:36.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.858 -07 000000541 INF: FPGA: Recv ZSGSRD 35510
17-03-17 18:41:36.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:36.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.868 -07 000000541 INF: FPGA: Recv ZSGSRD 35515
17-03-17 18:41:36.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.878 -07 000000501 INF: FPGA: Recv ZSGSRD 35507
17-03-17 18:41:36.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35513
17-03-17 18:41:36.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35514
17-03-17 18:41:36.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.908 -07 000000501 INF: FPGA: Recv ZSGSRD 35515
17-03-17 18:41:36.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.918 -07 000000382 INF: FPGA: Recv ZSGSRD 35511
17-03-17 18:41:36.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.928 -07 000000382 INF: FPGA: Recv ZSGSRD 35504
17-03-17 18:41:36.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.938 -07 000000512 INF: FPGA: Recv ZSGSRD 35510
17-03-17 18:41:36.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:36.948 -07 000000512 INF: FPGA: Recv ZSGSRD 35513
17-03-17 18:41:36.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:36.958 -07 000000512 INF: FPGA: Recv ZPIEZORD 31325
17-03-17 18:41:36.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:36.968 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.615 V. Piezo Error = -9.2 V.
17-03-17 18:41:36.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35511 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35512 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35504 (-167.5 uncal um), Max = 35515 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:41:36.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35511, posNoise = 4, negNoise = 7
17-03-17 18:41:36.968 -07 000000610 INF: Z Motor: After move to -0.168446, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:36.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:41:36.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:36.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:36.968 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:36.968 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:36.968 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:36.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:36.968 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:36.968 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:36.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:36.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:36.968 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:36.968 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:36.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:36.968 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:36.968 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:36.968 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:36.978 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:41:36.978 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:41:36.978 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:41:36.978 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:36.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36974 150\n [Camera]
17-03-17 18:41:37.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:41:37.578 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:37.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:37.578 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:37.578 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:37.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:41:37.578 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:37.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:37.578 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:37.578 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:37.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:41:37.718 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.005817,
17-03-17 18:41:37.768 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36974 779
17-03-17 18:41:37.918 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:37.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:41:37.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:41:37.958 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:37.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:41:37.958 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:41:37.958 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:37.958 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:37.968 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:37.968 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:41:37.968 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:41:38.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:38.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:38.108 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:38.108 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:38.108 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:41:38.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:38.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:38.118 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:38.118 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:38.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:41:38.298 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:41:38.298 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:38.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36974 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-17 18:41:38.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:38.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168453549377208. ------
17-03-17 18:41:38.308 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17484 mm
17-03-17 18:41:38.308 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:38.308 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:38.308 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:41:38.308 -07 000000541 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:41:38.308 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38194, sync = True, waitForSettling = False)
17-03-17 18:41:38.308 -07 000000382 INF: Z Motor: Moving to -0.174841 mm, started at -0.168454 mm, distance = -6.39 um
17-03-17 18:41:38.308 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:38.318 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:38.318 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:38.318 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:41:38.328 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:41:38.328 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:38.328 -07 000000541 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:38.328 -07 000000541 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:41:38.328 -07 000000382 INF: FPGA: Xmit ZDACW 38194\n [Z Motor]
17-03-17 18:41:38.328 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:41:38.338 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:38.338 -07 000000382 INF: FPGA: 'ZDACW 38194' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:41:38.348 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:38.358 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:38.358 -07 000000626 INF: FPGA: Recv ZDACR 38194
17-03-17 18:41:38.368 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:38.368 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:41:38.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:41:38.488 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:41:38.488 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:38.498 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:41:38.498 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:41:38.498 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:38.498 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:38.498 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:41:38.498 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:41:38.508 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:41:38.538 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:38.538 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:41:38.718 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:41:38.718 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:41:38.758 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:38.758 -07 000000561 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:41:38.768 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:38.768 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:38.768 -07 000000541 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:41:38.768 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 18:41:39.718 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:39.718 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:41:39.728 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.728 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:39.748 -07 000000541 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:39.748 -07 000000541 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:39.748 -07 000000541 INF: Y Motor: Moved to 69.8638 after 1437 ms (table move)
17-03-17 18:41:39.748 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174841 mm (DAC = 38194)
17-03-17 18:41:39.748 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.748 -07 000000476 INF: FPGA: Recv ZSGSRD 36511
17-03-17 18:41:39.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:41:39.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36506
17-03-17 18:41:39.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.768 -07 000000501 INF: FPGA: Recv ZSGSRD 36504
17-03-17 18:41:39.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.778 -07 000000382 INF: FPGA: Recv ZSGSRD 36511
17-03-17 18:41:39.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36512
17-03-17 18:41:39.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.798 -07 000000476 INF: FPGA: Recv ZSGSRD 36505
17-03-17 18:41:39.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.808 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.808 -07 000000382 INF: FPGA: Recv ZSGSRD 36505
17-03-17 18:41:39.818 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.818 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.818 -07 000000541 INF: FPGA: Recv ZSGSRD 36507
17-03-17 18:41:39.828 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.828 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.828 -07 000000626 INF: FPGA: Recv ZSGSRD 36503
17-03-17 18:41:39.838 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.838 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:39.838 -07 000000462 INF: FPGA: Recv ZSGSRD 36500
17-03-17 18:41:39.848 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.848 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:39.848 -07 000000462 INF: FPGA: Recv ZPIEZORD 32658
17-03-17 18:41:39.858 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:39.858 -07 000000012 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.5 V.
17-03-17 18:41:39.858 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36506 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36506 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36512 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:41:39.858 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36506, posNoise = 6, negNoise = 6
17-03-17 18:41:39.858 -07 000000012 INF: Z Motor: After move to -0.174841, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:39.858 -07 000000012 INF: Z Motor: Settle wait time = 1439 ms, measure time = 104 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:41:39.858 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:39.908 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:41:39.908 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:39.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:39.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:39.908 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:39.918 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:39.918 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:39.918 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:39.918 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:39.918 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:39.918 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:39.918 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:39.928 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:41:39.928 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:41:39.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:39.978 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:40.168 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:40.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:40.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:40.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 18:41:40.208 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:40.218 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:40.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:41:40.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:41:40.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:40.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:40.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:41:40.318 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:40.318 -07 000000462 INF: Autofocus start
17-03-17 18:41:40.318 -07 000000462 INF: MeasureProfile start
17-03-17 18:41:40.328 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:40.328 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:40.328 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:40.338 -07 000000462 INF: MeasureProfile done
17-03-17 18:41:40.338 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:41:40.338 -07 000000462 INF: Autofocus finished
17-03-17 18:41:40.528 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:40.528 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:40.538 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.17484564045826. ----------
17-03-17 18:41:40.538 -07 000000610 INF: Cycle	16	Tile	13	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:40.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36691, sync = True, waitForSettling = True)
17-03-17 18:41:40.538 -07 000000610 INF: Z Motor: Moving to -0.167961 mm, started at -0.174846 mm, distance = 6.89 um
17-03-17 18:41:40.538 -07 000000610 INF: FPGA: Xmit ZDACW 36691\n [Z Motor]
17-03-17 18:41:40.538 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:41:40.548 -07 000000610 INF: FPGA: 'ZDACW 36691' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:40.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:40.548 -07 000000478 INF: FPGA: Recv ZDACR 36691
17-03-17 18:41:40.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:40.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.708 -07 000000478 INF: FPGA: Recv ZSGSRD 35432
17-03-17 18:41:40.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:40.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.718 -07 000000626 INF: FPGA: Recv ZSGSRD 35440
17-03-17 18:41:40.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.728 -07 000000626 INF: FPGA: Recv ZSGSRD 35432
17-03-17 18:41:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.738 -07 000000626 INF: FPGA: Recv ZSGSRD 35436
17-03-17 18:41:40.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.748 -07 000000626 INF: FPGA: Recv ZSGSRD 35439
17-03-17 18:41:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.758 -07 000000012 INF: FPGA: Recv ZSGSRD 35434
17-03-17 18:41:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.768 -07 000000012 INF: FPGA: Recv ZSGSRD 35441
17-03-17 18:41:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.778 -07 000000012 INF: FPGA: Recv ZSGSRD 35435
17-03-17 18:41:40.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.788 -07 000000012 INF: FPGA: Recv ZSGSRD 35436
17-03-17 18:41:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:40.798 -07 000000012 INF: FPGA: Recv ZSGSRD 35431
17-03-17 18:41:40.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:40.808 -07 000000012 INF: FPGA: Recv ZPIEZORD 31241
17-03-17 18:41:40.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:40.818 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.2 V.
17-03-17 18:41:40.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35436 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35436 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35431 (-167.1 uncal um), Max = 35441 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:40.818 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35436, posNoise = 5, negNoise = 5
17-03-17 18:41:40.818 -07 000000610 INF: Z Motor: After move to -0.167961, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:40.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:41:40.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:40.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:40.818 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:40.818 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:40.818 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:40.818 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:40.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:40.818 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:40.818 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:40.818 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:40.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:41:40.818 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:40.828 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:40.828 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:40.828 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:40.828 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:40.828 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:41:40.828 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:41:40.838 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:41:40.838 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:41:40.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36867 150\n [Camera]
17-03-17 18:41:41.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:41.438 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:41.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:41.438 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:41.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:41.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:41:41.438 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:41.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:41.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:41.438 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:41.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:41:41.618 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:41.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:41.628 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36867 779
17-03-17 18:41:41.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:41.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:41:41.808 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:41:41.808 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:41.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:41:41.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:41:41.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:41.818 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:41.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:41.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:41:41.818 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:41:41.968 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:41.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:41.968 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:41.968 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:41.968 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:41:41.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:41.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:41.968 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:41.968 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:41.968 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:41:42.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:42.158 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:42.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36867 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-17 18:41:42.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:42.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.167971733466576. ------
17-03-17 18:41:42.158 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:42.158 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17435 mm
17-03-17 18:41:42.158 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:42.168 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:42.168 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:42.168 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:42.168 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:41:42.168 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38087, sync = True, waitForSettling = False)
17-03-17 18:41:42.168 -07 000000569 INF: Z Motor: Moving to -0.174351 mm, started at -0.167972 mm, distance = -6.38 um
17-03-17 18:41:42.168 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:41:42.178 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:42.178 -07 000000431 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:41:42.188 -07 000000569 INF: FPGA: Xmit ZDACW 38087\n [Z Motor]
17-03-17 18:41:42.188 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:41:42.188 -07 000000382 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:42.188 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:41:42.188 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:42.188 -07 000000382 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:41:42.198 -07 000000569 INF: FPGA: 'ZDACW 38087' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:41:42.198 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:42.198 -07 000000626 INF: FPGA: Recv ZDACR 38087
17-03-17 18:41:42.208 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:42.208 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:42.208 -07 000000569 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:41:42.348 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:41:42.348 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:41:42.348 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:42.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:41:42.348 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:41:42.348 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:42.358 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:42.358 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:41:42.358 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:41:42.358 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:41:42.368 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:42.368 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:41:42.578 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:41:42.578 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:41:42.628 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:42.628 -07 000000623 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:41:42.638 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:42.638 -07 000000382 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:42.638 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:41:42.638 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-17 18:41:43.098 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.963579,
17-03-17 18:41:43.588 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:43.588 -07 000000541 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:41:43.598 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.598 -07 000000382 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:43.618 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:43.618 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:43.618 -07 000000382 INF: Y Motor: Moved to 70.6890 after 1448 ms (table move)
17-03-17 18:41:43.618 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174351 mm (DAC = 38087)
17-03-17 18:41:43.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.618 -07 000000012 INF: FPGA: Recv ZSGSRD 36432
17-03-17 18:41:43.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:43.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.628 -07 000000561 INF: FPGA: Recv ZSGSRD 36428
17-03-17 18:41:43.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.638 -07 000000448 INF: FPGA: Recv ZSGSRD 36429
17-03-17 18:41:43.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.648 -07 000000478 INF: FPGA: Recv ZSGSRD 36434
17-03-17 18:41:43.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.658 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.658 -07 000000476 INF: FPGA: Recv ZSGSRD 36436
17-03-17 18:41:43.668 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.668 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.668 -07 000000626 INF: FPGA: Recv ZSGSRD 36431
17-03-17 18:41:43.678 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.678 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.678 -07 000000478 INF: FPGA: Recv ZSGSRD 36426
17-03-17 18:41:43.688 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.688 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.688 -07 000000623 INF: FPGA: Recv ZSGSRD 36433
17-03-17 18:41:43.698 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.698 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.698 -07 000000501 INF: FPGA: Recv ZSGSRD 36433
17-03-17 18:41:43.708 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.708 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:43.708 -07 000000438 INF: FPGA: Recv ZSGSRD 36431
17-03-17 18:41:43.718 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.718 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:43.718 -07 000000431 INF: FPGA: Recv ZPIEZORD 32608
17-03-17 18:41:43.728 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:43.728 -07 000000462 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.5 V.
17-03-17 18:41:43.728 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36431 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36432 (-173.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36426 (-173.4 uncal um), Max = 36436 (-173.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:43.728 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36431, posNoise = 5, negNoise = 5
17-03-17 18:41:43.728 -07 000000462 INF: Z Motor: After move to -0.174351, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:43.728 -07 000000462 INF: Z Motor: Settle wait time = 1451 ms, measure time = 105 ms (allowed 150 ms), total time = 1556 ms
17-03-17 18:41:43.728 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:43.778 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 18:41:43.778 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:43.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:43.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:43.778 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:43.778 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:43.778 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:43.778 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:43.778 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:43.788 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:43.788 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:43.788 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:43.788 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:41:43.798 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:43.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:43.838 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:44.038 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:44.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:44.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:44.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1183484744, 0x0, 559484976) start.
17-03-17 18:41:44.078 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:44.078 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:44.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:41:44.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1183484744, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:41:44.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:44.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:44.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:41:44.178 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:44.178 -07 000000569 INF: Autofocus start
17-03-17 18:41:44.178 -07 000000569 INF: MeasureProfile start
17-03-17 18:41:44.178 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:44.188 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:44.188 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:44.188 -07 000000569 INF: MeasureProfile done
17-03-17 18:41:44.188 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:41:44.188 -07 000000569 INF: Autofocus finished
17-03-17 18:41:44.388 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:44.388 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:41:44.388 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174363824547628. ----------
17-03-17 18:41:44.388 -07 000000610 INF: Cycle	16	Tile	14	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:44.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36620, sync = True, waitForSettling = True)
17-03-17 18:41:44.398 -07 000000610 INF: Z Motor: Moving to -0.167636 mm, started at -0.174364 mm, distance = 6.73 um
17-03-17 18:41:44.398 -07 000000610 INF: FPGA: Xmit ZDACW 36620\n [Z Motor]
17-03-17 18:41:44.398 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:41:44.408 -07 000000610 INF: FPGA: 'ZDACW 36620' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:44.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:44.408 -07 000000431 INF: FPGA: Recv ZDACR 36620
17-03-17 18:41:44.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:44.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.568 -07 000000551 INF: FPGA: Recv ZSGSRD 35383
17-03-17 18:41:44.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:44.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.578 -07 000000476 INF: FPGA: Recv ZSGSRD 35384
17-03-17 18:41:44.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35383
17-03-17 18:41:44.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.598 -07 000000512 INF: FPGA: Recv ZSGSRD 35378
17-03-17 18:41:44.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.608 -07 000000012 INF: FPGA: Recv ZSGSRD 35381
17-03-17 18:41:44.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.618 -07 000000541 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:41:44.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.628 -07 000000512 INF: FPGA: Recv ZSGSRD 35384
17-03-17 18:41:44.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.638 -07 000000561 INF: FPGA: Recv ZSGSRD 35385
17-03-17 18:41:44.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.648 -07 000000438 INF: FPGA: Recv ZSGSRD 35384
17-03-17 18:41:44.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:44.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35383
17-03-17 18:41:44.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:44.668 -07 000000561 INF: FPGA: Recv ZPIEZORD 31226
17-03-17 18:41:44.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:44.678 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -9.2 V.
17-03-17 18:41:44.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35383 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35384 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35378 (-166.7 uncal um), Max = 35388 (-166.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:44.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35383, posNoise = 5, negNoise = 5
17-03-17 18:41:44.678 -07 000000610 INF: Z Motor: After move to -0.167636, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:44.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:41:44.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:44.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:44.678 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:44.678 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:44.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:44.678 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:44.678 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:44.678 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:44.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:44.678 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:44.678 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:41:44.678 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:44.688 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:44.688 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:44.688 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:44.688 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:44.698 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:41:44.698 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:44.698 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:41:44.698 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:41:44.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36797 150\n [Camera]
17-03-17 18:41:44.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:45.298 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:45.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:45.298 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:45.298 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:45.298 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:41:45.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:45.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:45.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:45.298 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:45.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:41:45.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36797 780
17-03-17 18:41:45.638 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:45.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:41:45.678 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:45.678 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:45.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:41:45.678 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:41:45.678 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:45.678 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:45.678 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:41:45.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:45.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:41:45.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:45.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:45.828 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:45.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:45.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:45.958 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:45.958 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:45.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:41:45.968 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:45.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:41:46.018 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:46.018 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:46.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36797 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:41:46.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:46.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167631250223063. ------
17-03-17 18:41:46.028 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:46.028 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17435 mm
17-03-17 18:41:46.028 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:46.028 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:46.028 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:41:46.028 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:41:46.028 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38086, sync = True, waitForSettling = False)
17-03-17 18:41:46.028 -07 000000431 INF: Z Motor: Moving to -0.174347 mm, started at -0.167631 mm, distance = -6.72 um
17-03-17 18:41:46.038 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:46.038 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:46.038 -07 000000551 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:41:46.048 -07 000000431 INF: FPGA: Xmit ZDACW 38086\n [Z Motor]
17-03-17 18:41:46.048 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:41:46.048 -07 000000512 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:46.048 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:41:46.048 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:46.048 -07 000000512 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:41:46.058 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:46.058 -07 000000431 INF: FPGA: 'ZDACW 38086' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:41:46.068 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:46.068 -07 000000475 INF: FPGA: Recv ZDACR 38086
17-03-17 18:41:46.078 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:41:46.078 -07 000000431 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:41:46.078 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:46.258 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:46.258 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:41:46.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:41:46.338 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:41:46.338 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:46.338 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:41:46.338 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:41:46.338 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:46.348 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:46.348 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:46.348 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 18:41:46.358 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:41:46.448 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:41:46.448 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-17 18:41:46.498 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:46.498 -07 000000431 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:41:46.508 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:46.508 -07 000000512 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:46.508 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:41:46.508 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.114 mm/sec
17-03-17 18:41:46.618 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:46.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:47.458 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:47.458 -07 000000448 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:41:47.468 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.468 -07 000000512 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:47.488 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:47.488 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:47.488 -07 000000512 INF: Y Motor: Moved to 71.5195 after 1454 ms (table move)
17-03-17 18:41:47.488 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174347 mm (DAC = 38086)
17-03-17 18:41:47.488 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.488 -07 000000012 INF: FPGA: Recv ZSGSRD 36438
17-03-17 18:41:47.498 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:47.498 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.498 -07 000000569 INF: FPGA: Recv ZSGSRD 36432
17-03-17 18:41:47.508 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.508 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.508 -07 000000551 INF: FPGA: Recv ZSGSRD 36429
17-03-17 18:41:47.518 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.518 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.518 -07 000000448 INF: FPGA: Recv ZSGSRD 36429
17-03-17 18:41:47.528 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.528 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.528 -07 000000475 INF: FPGA: Recv ZSGSRD 36432
17-03-17 18:41:47.538 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.538 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.538 -07 000000569 INF: FPGA: Recv ZSGSRD 36434
17-03-17 18:41:47.548 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.548 -07 000000448 INF: FPGA: Recv ZSGSRD 36426
17-03-17 18:41:47.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.558 -07 000000626 INF: FPGA: Recv ZSGSRD 36424
17-03-17 18:41:47.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.568 -07 000000448 INF: FPGA: Recv ZSGSRD 36425
17-03-17 18:41:47.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:47.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36431
17-03-17 18:41:47.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.588 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:47.588 -07 000000512 INF: FPGA: Recv ZPIEZORD 32580
17-03-17 18:41:47.598 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:47.598 -07 000000541 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.5 V.
17-03-17 18:41:47.598 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36430 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36430 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36424 (-173.4 uncal um), Max = 36438 (-173.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:41:47.598 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36430, posNoise = 8, negNoise = 6
17-03-17 18:41:47.598 -07 000000541 INF: Z Motor: After move to -0.174347, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:47.598 -07 000000541 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-17 18:41:47.598 -07 000000541 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:47.648 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 18:41:47.648 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:47.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:47.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:47.648 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:47.648 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:47.648 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:47.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:47.658 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:47.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:47.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:41:47.658 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:47.668 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:41:47.668 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:41:47.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:47.708 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:47.908 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:47.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:47.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:47.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 18:41:47.948 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:47.948 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:47.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:41:48.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:41:48.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:48.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:48.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:41:48.048 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:48.048 -07 000000475 INF: Autofocus start
17-03-17 18:41:48.048 -07 000000475 INF: MeasureProfile start
17-03-17 18:41:48.048 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:48.058 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:41:48.058 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:48.068 -07 000000475 INF: MeasureProfile done
17-03-17 18:41:48.068 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:41:48.068 -07 000000475 INF: Autofocus finished
17-03-17 18:41:48.258 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:48.258 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:48.258 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174357400335487. ----------
17-03-17 18:41:48.258 -07 000000610 INF: Cycle	16	Tile	15	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:48.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36601, sync = True, waitForSettling = True)
17-03-17 18:41:48.268 -07 000000610 INF: Z Motor: Moving to -0.167549 mm, started at -0.174357 mm, distance = 6.81 um
17-03-17 18:41:48.268 -07 000000610 INF: FPGA: Xmit ZDACW 36601\n [Z Motor]
17-03-17 18:41:48.268 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:41:48.278 -07 000000610 INF: FPGA: 'ZDACW 36601' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:48.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:48.278 -07 000000012 INF: FPGA: Recv ZDACR 36601
17-03-17 18:41:48.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:48.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:48.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.438 -07 000000438 INF: FPGA: Recv ZSGSRD 35374
17-03-17 18:41:48.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:48.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.458 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.962185,
17-03-17 18:41:48.458 -07 000000569 INF: FPGA: Recv ZSGSRD 35376
17-03-17 18:41:48.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:41:48.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.488 -07 000000438 INF: FPGA: Recv ZSGSRD 35369
17-03-17 18:41:48.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:48.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.518 -07 000000475 INF: FPGA: Recv ZSGSRD 35371
17-03-17 18:41:48.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:48.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.538 -07 000000012 INF: FPGA: Recv ZSGSRD 35369
17-03-17 18:41:48.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:41:48.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35371
17-03-17 18:41:48.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:48.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.558 -07 000000438 INF: FPGA: Recv ZSGSRD 35376
17-03-17 18:41:48.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:48.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.568 -07 000000541 INF: FPGA: Recv ZSGSRD 35366
17-03-17 18:41:48.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:48.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.578 -07 000000012 INF: FPGA: Recv ZSGSRD 35365
17-03-17 18:41:48.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:48.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:48.588 -07 000000012 INF: FPGA: Recv ZSGSRD 35367
17-03-17 18:41:48.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:48.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:48.598 -07 000000012 INF: FPGA: Recv ZPIEZORD 31202
17-03-17 18:41:48.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:48.608 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.2 V.
17-03-17 18:41:48.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35370 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35370 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35365 (-166.6 uncal um), Max = 35376 (-166.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:48.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35370, posNoise = 6, negNoise = 5
17-03-17 18:41:48.608 -07 000000610 INF: Z Motor: After move to -0.167549, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:48.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 339 ms)
17-03-17 18:41:48.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:48.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:48.608 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:48.608 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:48.608 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:48.608 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:48.608 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:48.608 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:48.608 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:48.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:48.608 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:48.608 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:48.618 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:48.618 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:48.618 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:48.618 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:48.618 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:41:48.618 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:41:48.628 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:41:48.628 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:41:48.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36778 150\n [Camera]
17-03-17 18:41:48.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:49.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:49.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:49.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:49.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:49.228 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:49.228 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:49.228 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:49.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 18:41:49.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:49.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) start.
17-03-17 18:41:49.418 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36778 779
17-03-17 18:41:49.558 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:49.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:41:49.598 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 18:41:49.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:49.608 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:49.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:41:49.608 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:41:49.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:49.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:41:49.608 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:41:49.608 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:41:49.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:49.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:49.758 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:49.868 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:49.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:49.878 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:49.878 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:49.878 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:49.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:41:49.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 18:41:49.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:41:49.948 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:49.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36778 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:41:49.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:49.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.16754773546522. ------
17-03-17 18:41:49.948 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:49.948 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17352 mm
17-03-17 18:41:49.948 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:49.948 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:41:49.948 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:41:49.958 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:49.958 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:49.958 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:49.958 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37905, sync = True, waitForSettling = False)
17-03-17 18:41:49.958 -07 000000448 INF: Z Motor: Moving to -0.173518 mm, started at -0.167548 mm, distance = -5.97 um
17-03-17 18:41:49.958 -07 000000438 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:41:49.968 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:49.968 -07 000000626 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:49.968 -07 000000448 INF: FPGA: Xmit ZDACW 37905\n [Z Motor]
17-03-17 18:41:49.968 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:41:49.968 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:49.968 -07 000000626 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:41:49.978 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:49.978 -07 000000448 INF: FPGA: 'ZDACW 37905' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:41:49.988 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:49.998 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:49.998 -07 000000475 INF: FPGA: Recv ZDACR 37905
17-03-17 18:41:50.008 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:50.008 -07 000000448 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:41:50.178 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:50.178 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:41:50.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:41:50.258 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:41:50.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:50.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:41:50.268 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:41:50.268 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:50.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:50.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 18:41:50.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:50.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:41:50.368 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:41:50.368 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 393 ms overall
17-03-17 18:41:50.398 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:50.398 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:41:50.408 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:50.408 -07 000000626 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:50.408 -07 000000626 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:41:50.408 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 18:41:51.358 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:51.358 -07 000000462 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:41:51.368 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:51.368 -07 000000626 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:51.388 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:51.388 -07 000000626 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:51.388 -07 000000626 INF: Y Motor: Moved to 72.3501 after 1430 ms (table move)
17-03-17 18:41:51.388 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173518 mm (DAC = 37905)
17-03-17 18:41:51.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.388 -07 000000512 INF: FPGA: Recv ZSGSRD 36300
17-03-17 18:41:51.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:41:51.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.398 -07 000000431 INF: FPGA: Recv ZSGSRD 36297
17-03-17 18:41:51.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.408 -07 000000475 INF: FPGA: Recv ZSGSRD 36301
17-03-17 18:41:51.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.418 -07 000000541 INF: FPGA: Recv ZSGSRD 36304
17-03-17 18:41:51.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.428 -07 000000438 INF: FPGA: Recv ZSGSRD 36297
17-03-17 18:41:51.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.438 -07 000000476 INF: FPGA: Recv ZSGSRD 36302
17-03-17 18:41:51.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.448 -07 000000475 INF: FPGA: Recv ZSGSRD 36295
17-03-17 18:41:51.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.458 -07 000000462 INF: FPGA: Recv ZSGSRD 36301
17-03-17 18:41:51.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.468 -07 000000561 INF: FPGA: Recv ZSGSRD 36303
17-03-17 18:41:51.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:51.478 -07 000000448 INF: FPGA: Recv ZSGSRD 36297
17-03-17 18:41:51.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.488 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:51.488 -07 000000431 INF: FPGA: Recv ZPIEZORD 32432
17-03-17 18:41:51.498 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:51.498 -07 000000012 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.6 V.
17-03-17 18:41:51.498 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36300 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36300 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36295 (-172.6 uncal um), Max = 36304 (-172.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:41:51.498 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36300, posNoise = 4, negNoise = 5
17-03-17 18:41:51.498 -07 000000012 INF: Z Motor: After move to -0.173518, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:51.498 -07 000000012 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:41:51.498 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:51.548 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:41:51.548 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:51.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:51.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:51.548 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:51.548 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:51.548 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:51.548 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:51.548 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:51.558 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:51.558 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:51.558 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:51.558 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:41:51.558 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:41:51.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:51.608 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:51.618 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:51.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:51.808 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:51.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:51.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:51.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:41:51.848 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:51.848 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:51.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:41:51.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:41:51.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:51.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:51.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:41:51.948 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:51.948 -07 000000462 INF: Autofocus start
17-03-17 18:41:51.948 -07 000000462 INF: MeasureProfile start
17-03-17 18:41:51.948 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:51.958 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:41:51.958 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:51.968 -07 000000462 INF: MeasureProfile done
17-03-17 18:41:51.968 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:41:51.968 -07 000000462 INF: Autofocus finished
17-03-17 18:41:52.158 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:52.158 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:52.158 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173522252757058. ----------
17-03-17 18:41:52.168 -07 000000610 INF: Cycle	16	Tile	16	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:52.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36385, sync = True, waitForSettling = True)
17-03-17 18:41:52.168 -07 000000610 INF: Z Motor: Moving to -0.166560 mm, started at -0.173522 mm, distance = 6.96 um
17-03-17 18:41:52.168 -07 000000610 INF: FPGA: Xmit ZDACW 36385\n [Z Motor]
17-03-17 18:41:52.168 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:41:52.178 -07 000000610 INF: FPGA: 'ZDACW 36385' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:52.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:52.178 -07 000000480 INF: FPGA: Recv ZDACR 36385
17-03-17 18:41:52.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:52.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.338 -07 000000475 INF: FPGA: Recv ZSGSRD 35221
17-03-17 18:41:52.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.348 -07 000000551 INF: FPGA: Recv ZSGSRD 35227
17-03-17 18:41:52.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.358 -07 000000541 INF: FPGA: Recv ZSGSRD 35214
17-03-17 18:41:52.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.368 -07 000000561 INF: FPGA: Recv ZSGSRD 35214
17-03-17 18:41:52.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.378 -07 000000431 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:41:52.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.388 -07 000000561 INF: FPGA: Recv ZSGSRD 35224
17-03-17 18:41:52.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.398 -07 000000569 INF: FPGA: Recv ZSGSRD 35210
17-03-17 18:41:52.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.408 -07 000000569 INF: FPGA: Recv ZSGSRD 35213
17-03-17 18:41:52.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.418 -07 000000561 INF: FPGA: Recv ZSGSRD 35223
17-03-17 18:41:52.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:52.428 -07 000000541 INF: FPGA: Recv ZSGSRD 35219
17-03-17 18:41:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:52.438 -07 000000480 INF: FPGA: Recv ZPIEZORD 30987
17-03-17 18:41:52.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:52.448 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.3 V.
17-03-17 18:41:52.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35218 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35210 (-165.7 uncal um), Max = 35227 (-165.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:41:52.448 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35218, posNoise = 9, negNoise = 8
17-03-17 18:41:52.448 -07 000000610 INF: Z Motor: After move to -0.166560, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:52.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:41:52.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:52.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:52.448 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:52.448 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:52.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:52.448 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:52.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:52.448 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:52.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:41:52.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:52.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:41:52.448 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:52.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:52.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:52.458 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:52.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:52.468 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:41:52.468 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:52.468 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:41:52.468 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:41:52.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36562 150\n [Camera]
17-03-17 18:41:52.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:53.058 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:53.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:53.058 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:53.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:53.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:53.068 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:53.068 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:53.068 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:41:53.068 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:53.068 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:41:53.258 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36562 779
17-03-17 18:41:53.408 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:53.438 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:41:53.548 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 480 ms.
17-03-17 18:41:53.548 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:53.548 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 475 ms.
17-03-17 18:41:53.548 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 476 ms.
17-03-17 18:41:53.548 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:53.558 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:53.558 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 491 ms.
17-03-17 18:41:53.558 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:53.568 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 18:41:53.598 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:53.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:53.598 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:53.598 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:53.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:53.598 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:53.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:53.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:41:53.608 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:53.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:41:53.788 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:41:53.788 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:53.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36562 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-17 18:41:53.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:53.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166571255219672. ------
17-03-17 18:41:53.788 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:53.788 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17312 mm
17-03-17 18:41:53.788 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:53.798 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:53.798 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 18:41:53.798 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:53.798 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37818, sync = True, waitForSettling = False)
17-03-17 18:41:53.798 -07 000000541 INF: Z Motor: Moving to -0.173120 mm, started at -0.166571 mm, distance = -6.55 um
17-03-17 18:41:53.798 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:41:53.798 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:41:53.808 -07 000000541 INF: FPGA: Xmit ZDACW 37818\n [Z Motor]
17-03-17 18:41:53.808 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:41:53.818 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:53.818 -07 000000541 INF: FPGA: 'ZDACW 37818' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:41:53.818 -07 000000476 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:41:53.828 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:41:53.828 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:53.828 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:53.828 -07 000000569 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:41:53.838 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:53.838 -07 000000626 INF: FPGA: Recv ZDACR 37818
17-03-17 18:41:53.848 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:53.848 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:53.848 -07 000000541 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:41:53.868 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.993549,
17-03-17 18:41:53.978 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:41:53.978 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:41:53.978 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:53.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:41:53.988 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:41:53.988 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:53.988 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:53.988 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:53.988 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:41:53.998 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:41:53.998 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:53.998 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 18:41:54.218 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:41:54.218 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:41:54.258 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:54.258 -07 000000551 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:41:54.268 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:54.268 -07 000000569 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:54.268 -07 000000569 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:41:54.268 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:41:55.218 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:55.218 -07 000000480 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:41:55.228 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:55.228 -07 000000569 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:55.248 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:55.248 -07 000000569 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:41:55.248 -07 000000569 INF: Y Motor: Moved to 73.1768 after 1446 ms (table move)
17-03-17 18:41:55.248 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173120 mm (DAC = 37818)
17-03-17 18:41:55.248 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.248 -07 000000626 INF: FPGA: Recv ZSGSRD 36247
17-03-17 18:41:55.258 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:55.258 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36235
17-03-17 18:41:55.268 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.268 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.268 -07 000000438 INF: FPGA: Recv ZSGSRD 36234
17-03-17 18:41:55.278 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.278 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.278 -07 000000626 INF: FPGA: Recv ZSGSRD 36236
17-03-17 18:41:55.288 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36241
17-03-17 18:41:55.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.298 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.298 -07 000000012 INF: FPGA: Recv ZSGSRD 36246
17-03-17 18:41:55.308 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.308 -07 000000480 INF: FPGA: Recv ZSGSRD 36245
17-03-17 18:41:55.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.318 -07 000000551 INF: FPGA: Recv ZSGSRD 36231
17-03-17 18:41:55.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.328 -07 000000551 INF: FPGA: Recv ZSGSRD 36234
17-03-17 18:41:55.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:55.338 -07 000000551 INF: FPGA: Recv ZSGSRD 36239
17-03-17 18:41:55.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.348 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:55.348 -07 000000569 INF: FPGA: Recv ZPIEZORD 32366
17-03-17 18:41:55.358 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:55.358 -07 000000512 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -8.6 V.
17-03-17 18:41:55.358 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36239 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36238 (-172.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36231 (-172.2 uncal um), Max = 36247 (-172.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:41:55.358 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36239, posNoise = 8, negNoise = 8
17-03-17 18:41:55.358 -07 000000512 INF: Z Motor: After move to -0.173120, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:55.358 -07 000000512 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:41:55.358 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:55.408 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 18:41:55.408 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:55.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:55.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:55.408 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:55.408 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:55.408 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:55.408 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:55.408 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:55.408 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:55.418 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:55.418 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:55.418 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:41:55.418 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:41:55.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:55.468 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:55.668 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:55.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:55.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:55.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:41:55.708 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:55.708 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:55.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:41:55.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:41:55.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:55.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:41:55.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:41:55.808 -07 000000551 INF: Autofocus start
17-03-17 18:41:55.808 -07 000000551 INF: MeasureProfile start
17-03-17 18:41:55.808 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:55.808 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:55.818 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:41:55.818 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:55.828 -07 000000551 INF: MeasureProfile done
17-03-17 18:41:55.828 -07 000000551 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:41:55.828 -07 000000551 INF: Autofocus finished
17-03-17 18:41:56.018 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:56.018 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:56.018 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.17313037581641. ----------
17-03-17 18:41:56.018 -07 000000610 INF: Cycle	16	Tile	17	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:56.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36332, sync = True, waitForSettling = True)
17-03-17 18:41:56.028 -07 000000610 INF: Z Motor: Moving to -0.166317 mm, started at -0.173130 mm, distance = 6.81 um
17-03-17 18:41:56.028 -07 000000610 INF: FPGA: Xmit ZDACW 36332\n [Z Motor]
17-03-17 18:41:56.028 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:41:56.038 -07 000000610 INF: FPGA: 'ZDACW 36332' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:41:56.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:56.038 -07 000000561 INF: FPGA: Recv ZDACR 36332
17-03-17 18:41:56.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:41:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:41:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:56.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.208 -07 000000012 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:41:56.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35180
17-03-17 18:41:56.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.228 -07 000000438 INF: FPGA: Recv ZSGSRD 35176
17-03-17 18:41:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.238 -07 000000561 INF: FPGA: Recv ZSGSRD 35182
17-03-17 18:41:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:41:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.258 -07 000000551 INF: FPGA: Recv ZSGSRD 35185
17-03-17 18:41:56.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.268 -07 000000561 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:41:56.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.278 -07 000000476 INF: FPGA: Recv ZSGSRD 35177
17-03-17 18:41:56.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:56.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35182
17-03-17 18:41:56.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:56.298 -07 000000623 INF: FPGA: Recv ZPIEZORD 30933
17-03-17 18:41:56.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:56.308 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.4 V.
17-03-17 18:41:56.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35180 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35180 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35176 (-165.4 uncal um), Max = 35185 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:41:56.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35180, posNoise = 5, negNoise = 4
17-03-17 18:41:56.308 -07 000000610 INF: Z Motor: After move to -0.166317, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:56.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:41:56.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:56.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:56.308 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:56.308 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:56.308 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:41:56.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:41:56.308 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:41:56.308 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:56.308 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:41:56.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:41:56.308 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:41:56.308 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:41:56.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:41:56.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:41:56.308 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:41:56.308 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:41:56.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:41:56.318 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:41:56.318 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:41:56.318 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:41:56.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36509 150\n [Camera]
17-03-17 18:41:56.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:41:56.618 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:41:56.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:41:56.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:41:56.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:41:56.928 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:56.928 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:56.928 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:41:56.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:41:56.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:41:56.928 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:56.928 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:56.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:41:57.118 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36509 779
17-03-17 18:41:57.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:41:57.298 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:41:57.298 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:41:57.298 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:57.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:41:57.298 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:41:57.298 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:57.298 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:57.308 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:57.308 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:41:57.308 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:41:57.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:41:57.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:41:57.458 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:41:57.458 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:41:57.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:41:57.458 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:41:57.458 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:41:57.458 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:41:57.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:41:57.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:41:57.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:41:57.648 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:41:57.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36509 150' command took 2 ms to send, 1312 ms to get response, and 1318 ms overall
17-03-17 18:41:57.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:41:57.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.166327135158285. ------
17-03-17 18:41:57.658 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17280 mm
17-03-17 18:41:57.658 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:41:57.658 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:57.658 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:41:57.658 -07 000000541 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:41:57.658 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37748, sync = True, waitForSettling = False)
17-03-17 18:41:57.658 -07 000000501 INF: Z Motor: Moving to -0.172799 mm, started at -0.166327 mm, distance = -6.47 um
17-03-17 18:41:57.658 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:57.668 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:57.668 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:57.668 -07 000000561 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:41:57.678 -07 000000501 INF: FPGA: Xmit ZDACW 37748\n [Z Motor]
17-03-17 18:41:57.678 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:41:57.678 -07 000000541 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:57.678 -07 000000541 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:41:57.678 -07 000000541 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:41:57.678 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:41:57.688 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:41:57.688 -07 000000501 INF: FPGA: 'ZDACW 37748' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:41:57.698 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:41:57.708 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:57.708 -07 000000480 INF: FPGA: Recv ZDACR 37748
17-03-17 18:41:57.718 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:41:57.718 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:41:57.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:41:57.838 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:41:57.838 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:57.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:41:57.838 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:41:57.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:57.838 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:41:57.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:41:57.848 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:41:57.848 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:41:57.888 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:41:57.888 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:41:58.068 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:41:58.068 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:41:58.098 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:58.108 -07 000000551 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:41:58.108 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:41:58.108 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:58.108 -07 000000541 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:41:58.108 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.131 mm/sec
17-03-17 18:41:59.058 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:41:59.058 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:41:59.068 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:41:59.068 -07 000000541 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:41:59.078 -07 000000541 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:41:59.078 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:41:59.078 -07 000000541 INF: Y Motor: Moved to 74.0088 after 1421 ms (table move)
17-03-17 18:41:59.088 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172799 mm (DAC = 37748)
17-03-17 18:41:59.088 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.088 -07 000000431 INF: FPGA: Recv ZSGSRD 36188
17-03-17 18:41:59.098 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.098 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.098 -07 000000541 INF: FPGA: Recv ZSGSRD 36191
17-03-17 18:41:59.108 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.108 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.108 -07 000000438 INF: FPGA: Recv ZSGSRD 36183
17-03-17 18:41:59.118 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.118 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.118 -07 000000012 INF: FPGA: Recv ZSGSRD 36191
17-03-17 18:41:59.128 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.128 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.128 -07 000000431 INF: FPGA: Recv ZSGSRD 36189
17-03-17 18:41:59.138 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:59.138 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.138 -07 000000438 INF: FPGA: Recv ZSGSRD 36193
17-03-17 18:41:59.148 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.148 -07 000000501 INF: FPGA: Recv ZSGSRD 36189
17-03-17 18:41:59.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.158 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.158 -07 000000551 INF: FPGA: Recv ZSGSRD 36187
17-03-17 18:41:59.168 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.168 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.168 -07 000000569 INF: FPGA: Recv ZSGSRD 36189
17-03-17 18:41:59.178 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.178 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:41:59.178 -07 000000480 INF: FPGA: Recv ZSGSRD 36189
17-03-17 18:41:59.188 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.188 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:41:59.188 -07 000000480 INF: FPGA: Recv ZPIEZORD 32331
17-03-17 18:41:59.198 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.198 -07 000000476 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.5 V.
17-03-17 18:41:59.198 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36189 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36189 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36183 (-171.9 uncal um), Max = 36193 (-172.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:41:59.198 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36189, posNoise = 4, negNoise = 6
17-03-17 18:41:59.198 -07 000000476 INF: Z Motor: After move to -0.172799, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:41:59.198 -07 000000476 INF: Z Motor: Settle wait time = 1424 ms, measure time = 111 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:41:59.198 -07 000000476 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:41:59.228 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.979922,
17-03-17 18:41:59.238 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:41:59.238 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:41:59.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:41:59.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:41:59.238 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:41:59.238 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:41:59.238 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:41:59.238 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:41:59.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:41:59.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:41:59.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 18:41:59.248 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:41:59.268 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 18:41:59.268 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 23 ms.
17-03-17 18:41:59.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:41:59.318 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:41:59.518 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:41:59.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:41:59.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:41:59.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:41:59.558 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:41:59.558 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:41:59.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 287 ms overall
17-03-17 18:41:59.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:41:59.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:41:59.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:41:59.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:41:59.658 -07 000000476 INF: Autofocus start
17-03-17 18:41:59.658 -07 000000476 INF: MeasureProfile start
17-03-17 18:41:59.658 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:41:59.658 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:41:59.668 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:41:59.668 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:41:59.668 -07 000000476 INF: MeasureProfile done
17-03-17 18:41:59.668 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:41:59.668 -07 000000476 INF: Autofocus finished
17-03-17 18:41:59.868 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:41:59.868 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:41:59.868 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172809165209322. ----------
17-03-17 18:41:59.868 -07 000000610 INF: Cycle	16	Tile	18	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:41:59.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36263, sync = True, waitForSettling = True)
17-03-17 18:41:59.878 -07 000000610 INF: Z Motor: Moving to -0.166001 mm, started at -0.172809 mm, distance = 6.81 um
17-03-17 18:41:59.878 -07 000000610 INF: FPGA: Xmit ZDACW 36263\n [Z Motor]
17-03-17 18:41:59.878 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:41:59.888 -07 000000610 INF: FPGA: 'ZDACW 36263' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:41:59.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:41:59.888 -07 000000478 INF: FPGA: Recv ZDACR 36263
17-03-17 18:41:59.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:41:59.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.048 -07 000000478 INF: FPGA: Recv ZSGSRD 35129
17-03-17 18:42:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.058 -07 000000478 INF: FPGA: Recv ZSGSRD 35135
17-03-17 18:42:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.068 -07 000000569 INF: FPGA: Recv ZSGSRD 35130
17-03-17 18:42:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.078 -07 000000561 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:42:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35132
17-03-17 18:42:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.098 -07 000000561 INF: FPGA: Recv ZSGSRD 35131
17-03-17 18:42:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35134
17-03-17 18:42:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.118 -07 000000561 INF: FPGA: Recv ZSGSRD 35128
17-03-17 18:42:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.128 -07 000000501 INF: FPGA: Recv ZSGSRD 35131
17-03-17 18:42:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:00.138 -07 000000561 INF: FPGA: Recv ZSGSRD 35134
17-03-17 18:42:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:00.148 -07 000000569 INF: FPGA: Recv ZPIEZORD 30923
17-03-17 18:42:00.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:00.158 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.3 V.
17-03-17 18:42:00.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35131 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35131 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35127 (-165.1 uncal um), Max = 35135 (-165.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:42:00.158 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35131, posNoise = 4, negNoise = 4
17-03-17 18:42:00.158 -07 000000610 INF: Z Motor: After move to -0.166001, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:00.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:42:00.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:00.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:00.158 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:00.158 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:00.158 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:00.158 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:00.158 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:00.158 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:00.158 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:00.158 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:00.168 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:00.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:00.168 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:42:00.168 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:00.168 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:00.168 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:00.178 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:42:00.178 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:42:00.178 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:42:00.178 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:42:00.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36439 150\n [Camera]
17-03-17 18:42:00.378 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:00.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:00.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:00.778 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:00.778 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:00.778 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:42:00.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:00.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:00.778 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:00.778 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:00.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:42:00.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36439 779
17-03-17 18:42:01.118 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:01.158 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:42:01.158 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:42:01.158 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:01.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:42:01.158 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:42:01.158 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:01.158 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:01.158 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:01.158 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:42:01.168 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:42:01.308 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:01.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:01.308 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:01.308 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:01.308 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:42:01.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:01.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:01.308 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:01.318 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:01.318 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:42:01.498 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:01.498 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:01.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36439 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-17 18:42:01.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:42:01.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.166012348763339. ------
17-03-17 18:42:01.498 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17222 mm
17-03-17 18:42:01.498 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:01.498 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:01.508 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:01.508 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:42:01.508 -07 000000431 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:42:01.508 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37621, sync = True, waitForSettling = False)
17-03-17 18:42:01.508 -07 000000561 INF: Z Motor: Moving to -0.172218 mm, started at -0.166012 mm, distance = -6.21 um
17-03-17 18:42:01.518 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:01.518 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:01.518 -07 000000476 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:42:01.528 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:42:01.528 -07 000000431 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:01.528 -07 000000431 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:01.528 -07 000000431 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:42:01.528 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:01.538 -07 000000561 INF: FPGA: Xmit ZDACW 37621\n [Z Motor]
17-03-17 18:42:01.538 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:42:01.548 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:01.548 -07 000000561 INF: FPGA: 'ZDACW 37621' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 18:42:01.558 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:01.558 -07 000000512 INF: FPGA: Recv ZDACR 37621
17-03-17 18:42:01.568 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:42:01.568 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:42:01.618 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:01.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:01.688 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:42:01.688 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:42:01.688 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:01.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:42:01.698 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:42:01.698 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:01.698 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:42:01.698 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:42:01.698 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:01.708 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:42:01.728 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:01.728 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 18:42:01.918 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:42:01.918 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:42:01.948 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:01.948 -07 000000561 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:42:01.958 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:01.958 -07 000000431 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:01.958 -07 000000431 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:42:01.958 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 18:42:02.908 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:02.908 -07 000000551 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:42:02.918 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:02.918 -07 000000431 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:02.928 -07 000000431 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:02.928 -07 000000431 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:42:02.928 -07 000000431 INF: Y Motor: Moved to 74.8330 after 1422 ms (table move)
17-03-17 18:42:02.938 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172218 mm (DAC = 37621)
17-03-17 18:42:02.938 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:02.938 -07 000000478 INF: FPGA: Recv ZSGSRD 36103
17-03-17 18:42:02.948 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:02.948 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:02.948 -07 000000478 INF: FPGA: Recv ZSGSRD 36096
17-03-17 18:42:02.958 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:02.958 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:02.958 -07 000000478 INF: FPGA: Recv ZSGSRD 36094
17-03-17 18:42:02.968 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:02.968 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:02.968 -07 000000561 INF: FPGA: Recv ZSGSRD 36094
17-03-17 18:42:02.978 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:02.978 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:02.978 -07 000000478 INF: FPGA: Recv ZSGSRD 36098
17-03-17 18:42:02.988 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:02.988 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:02.988 -07 000000561 INF: FPGA: Recv ZSGSRD 36098
17-03-17 18:42:02.998 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:02.998 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:02.998 -07 000000512 INF: FPGA: Recv ZSGSRD 36104
17-03-17 18:42:03.008 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.008 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.008 -07 000000512 INF: FPGA: Recv ZSGSRD 36103
17-03-17 18:42:03.018 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.018 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.018 -07 000000561 INF: FPGA: Recv ZSGSRD 36099
17-03-17 18:42:03.028 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.028 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.028 -07 000000551 INF: FPGA: Recv ZSGSRD 36099
17-03-17 18:42:03.038 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:42:03.038 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:03.038 -07 000000478 INF: FPGA: Recv ZPIEZORD 32198
17-03-17 18:42:03.048 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.048 -07 000000501 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.6 V.
17-03-17 18:42:03.048 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36099 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36098 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36094 (-171.3 uncal um), Max = 36104 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:42:03.048 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36099, posNoise = 5, negNoise = 5
17-03-17 18:42:03.048 -07 000000501 INF: Z Motor: After move to -0.172218, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:03.048 -07 000000501 INF: Z Motor: Settle wait time = 1423 ms, measure time = 110 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:42:03.048 -07 000000501 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:03.088 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 18:42:03.088 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:03.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:03.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:03.088 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:03.088 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:03.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:03.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:03.088 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:03.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:03.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:03.098 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:03.098 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:03.108 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:42:03.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:03.158 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:03.348 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:03.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:03.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:03.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 18:42:03.388 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:03.388 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:03.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:42:03.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:42:03.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:03.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:03.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:42:03.498 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:03.498 -07 000000512 INF: Autofocus start
17-03-17 18:42:03.498 -07 000000512 INF: MeasureProfile start
17-03-17 18:42:03.508 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:03.508 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:03.508 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:03.518 -07 000000512 INF: MeasureProfile done
17-03-17 18:42:03.518 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:42:03.518 -07 000000512 INF: Autofocus finished
17-03-17 18:42:03.708 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:03.708 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:42:03.708 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.172230986116564. ----------
17-03-17 18:42:03.718 -07 000000610 INF: Cycle	16	Tile	19	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:03.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36136, sync = True, waitForSettling = True)
17-03-17 18:42:03.718 -07 000000610 INF: Z Motor: Moving to -0.165420 mm, started at -0.172231 mm, distance = 6.81 um
17-03-17 18:42:03.718 -07 000000610 INF: FPGA: Xmit ZDACW 36136\n [Z Motor]
17-03-17 18:42:03.718 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:42:03.728 -07 000000610 INF: FPGA: 'ZDACW 36136' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:42:03.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:03.728 -07 000000551 INF: FPGA: Recv ZDACR 36136
17-03-17 18:42:03.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:03.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.888 -07 000000551 INF: FPGA: Recv ZSGSRD 35044
17-03-17 18:42:03.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35043
17-03-17 18:42:03.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.908 -07 000000551 INF: FPGA: Recv ZSGSRD 35039
17-03-17 18:42:03.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.918 -07 000000541 INF: FPGA: Recv ZSGSRD 35038
17-03-17 18:42:03.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.928 -07 000000551 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:42:03.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35049
17-03-17 18:42:03.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35047
17-03-17 18:42:03.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35040
17-03-17 18:42:03.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.968 -07 000000431 INF: FPGA: Recv ZSGSRD 35038
17-03-17 18:42:03.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:03.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35039
17-03-17 18:42:03.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:03.988 -07 000000382 INF: FPGA: Recv ZPIEZORD 30780
17-03-17 18:42:03.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:03.998 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.514 V. Piezo Error = -9.4 V.
17-03-17 18:42:03.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35041 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35040 (-164.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35036 (-164.5 uncal um), Max = 35049 (-164.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:42:03.998 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35041, posNoise = 8, negNoise = 5
17-03-17 18:42:03.998 -07 000000610 INF: Z Motor: After move to -0.165420, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:03.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:42:03.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:03.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:03.998 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:03.998 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:03.998 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:03.998 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:03.998 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:03.998 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:03.998 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:03.998 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:03.998 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:03.998 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:04.008 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:42:04.008 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:04.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:04.008 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:04.008 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:42:04.008 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:04.018 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:42:04.018 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:42:04.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36313 150\n [Camera]
17-03-17 18:42:04.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:04.598 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.020806,
17-03-17 18:42:04.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:04.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:04.618 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:04.618 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:04.618 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:42:04.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:04.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:04.618 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:04.618 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:04.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:42:04.808 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36313 781
17-03-17 18:42:04.958 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:04.988 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:42:04.988 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:42:04.988 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:04.988 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:42:04.988 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:42:04.998 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:04.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:04.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:42:04.998 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:05.008 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:42:05.138 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:05.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:05.148 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:05.148 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:05.148 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:42:05.148 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:05.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:05.148 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:05.148 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:05.148 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:42:05.338 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:42:05.338 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:05.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36313 150' command took 2 ms to send, 1312 ms to get response, and 1318 ms overall
17-03-17 18:42:05.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:42:05.528 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:42:05.528 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:05.528 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:42:05.528 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:42:05.528 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:05.528 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:05.538 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:42:05.538 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:42:05.538 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:42:05.538 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:42:05.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 18:42:05.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:42:05.618 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:42:05.618 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:42:05.628 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:42:05.628 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 18:42:05.638 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:05.638 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:42:06.138 -07 000000476 INF: FPGA: Recv EMIN
17-03-17 18:42:06.138 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 18:42:06.138 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:42:06.138 -07 000000551 INF: FPGA: Recv EMCUR 
17-03-17 18:42:06.148 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:06.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:06.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8330078125, Z-Position -0.165434169670581. ------
17-03-17 18:42:06.148 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14011 mm
17-03-17 18:42:06.148 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:06.148 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:06.148 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:42:06.148 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 74.8330 mm, delta = -14.9204 mm
17-03-17 18:42:06.148 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30608, sync = True, waitForSettling = False)
17-03-17 18:42:06.148 -07 000000478 INF: Z Motor: Moving to -0.140114 mm, started at -0.165434 mm, distance = 25.32 um
17-03-17 18:42:06.158 -07 000000478 INF: FPGA: Xmit ZDACW 30608\n [Z Motor]
17-03-17 18:42:06.158 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:06.158 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:06.158 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:42:06.168 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:06.168 -07 000000478 INF: FPGA: 'ZDACW 30608' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:06.178 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:06.178 -07 000000501 INF: FPGA: Recv YRDPOS 153259
17-03-17 18:42:06.188 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:06.188 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:42:06.188 -07 000000431 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:06.188 -07 000000462 INF: FPGA: Recv ZDACR 30608
17-03-17 18:42:06.188 -07 000000431 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:42:06.188 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:42:06.198 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:06.198 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:42:06.198 -07 000000478 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:42:06.368 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:06.368 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:42:06.618 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:06.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:07.818 -07 000000569 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 18:42:07.818 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1635 ms overall
17-03-17 18:42:07.818 -07 000000431 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:42:07.818 -07 000000431 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:42:07.818 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1635 ms, distance = 14.920 mm, average velocity = 9.126 mm/sec
17-03-17 18:42:09.968 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.038479,
17-03-17 18:42:10.668 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:10.668 -07 000000541 INF: FPGA: Recv YRDPOS 122700
17-03-17 18:42:10.678 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:10.678 -07 000000431 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:10.698 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.000500, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:10.698 -07 000000431 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:42:10.698 -07 000000431 INF: Y Motor: Moved to 59.9121 after 4550 ms
17-03-17 18:42:10.708 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140114 mm (DAC = 30608)
17-03-17 18:42:10.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.708 -07 000000012 INF: FPGA: Recv ZSGSRD 31105
17-03-17 18:42:10.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:10.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.718 -07 000000012 INF: FPGA: Recv ZSGSRD 31100
17-03-17 18:42:10.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.728 -07 000000012 INF: FPGA: Recv ZSGSRD 31097
17-03-17 18:42:10.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.738 -07 000000476 INF: FPGA: Recv ZSGSRD 31098
17-03-17 18:42:10.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.748 -07 000000476 INF: FPGA: Recv ZSGSRD 31101
17-03-17 18:42:10.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.758 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.758 -07 000000476 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:42:10.768 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.768 -07 000000012 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:42:10.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.778 -07 000000462 INF: FPGA: Recv ZSGSRD 31105
17-03-17 18:42:10.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.788 -07 000000462 INF: FPGA: Recv ZSGSRD 31101
17-03-17 18:42:10.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:10.798 -07 000000462 INF: FPGA: Recv ZSGSRD 31098
17-03-17 18:42:10.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.808 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:10.808 -07 000000462 INF: FPGA: Recv ZPIEZORD 26658
17-03-17 18:42:10.818 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:10.818 -07 000000382 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.670 V. Piezo Error = -9.8 V.
17-03-17 18:42:10.818 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31101 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31101 (-139.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31097 (-139.3 uncal um), Max = 31105 (-139.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:42:10.818 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31101, posNoise = 4, negNoise = 4
17-03-17 18:42:10.818 -07 000000382 INF: Z Motor: After move to -0.140114, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:10.818 -07 000000382 INF: Z Motor: Settle wait time = 4553 ms, measure time = 107 ms (allowed 150 ms), total time = 4660 ms
17-03-17 18:42:10.818 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:10.868 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 18:42:10.868 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:10.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:10.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:10.868 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:10.868 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:10.868 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:10.868 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:10.868 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:10.868 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:42:10.888 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 18:42:10.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:10.898 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:10.898 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:10.898 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:10.898 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 18:42:10.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:10.948 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:11.148 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:11.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:11.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:11.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:42:11.188 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:11.188 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:11.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 18:42:11.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:42:11.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:11.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:11.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:42:11.288 -07 000000551 INF: Image SNR check: start
17-03-17 18:42:11.288 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:11.298 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:11.298 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-17 18:42:11.298 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:11.308 -07 000000551 INF: Image SNR check: pass  [peak (Max-Min)=70.58]
17-03-17 18:42:11.308 -07 000000551 INF: Autofocus start
17-03-17 18:42:11.308 -07 000000551 INF: MeasureProfile start
17-03-17 18:42:11.318 -07 000000551 INF: MeasureProfile done
17-03-17 18:42:11.318 -07 000000551 INF: X=15  Z correction [um]=0.04820751
17-03-17 18:42:11.318 -07 000000551 INF: Autofocus finished
17-03-17 18:42:11.498 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:11.498 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:42:11.508 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.912109375, Z-position -0.140122773832043. ----------
17-03-17 18:42:11.508 -07 000000610 INF: Cycle	16	Tile	1	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:11.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29131, sync = True, waitForSettling = True)
17-03-17 18:42:11.508 -07 000000610 INF: Z Motor: Moving to -0.133353 mm, started at -0.140123 mm, distance = 6.77 um
17-03-17 18:42:11.508 -07 000000610 INF: FPGA: Xmit ZDACW 29131\n [Z Motor]
17-03-17 18:42:11.508 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:42:11.518 -07 000000610 INF: FPGA: 'ZDACW 29131' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:11.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:11.518 -07 000000382 INF: FPGA: Recv ZDACR 29131
17-03-17 18:42:11.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:11.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:11.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:11.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.678 -07 000000541 INF: FPGA: Recv ZSGSRD 30049
17-03-17 18:42:11.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:11.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.688 -07 000000541 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:42:11.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.698 -07 000000541 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:42:11.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.708 -07 000000012 INF: FPGA: Recv ZSGSRD 30048
17-03-17 18:42:11.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.718 -07 000000569 INF: FPGA: Recv ZSGSRD 30037
17-03-17 18:42:11.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.728 -07 000000569 INF: FPGA: Recv ZSGSRD 30050
17-03-17 18:42:11.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.738 -07 000000569 INF: FPGA: Recv ZSGSRD 30043
17-03-17 18:42:11.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.748 -07 000000478 INF: FPGA: Recv ZSGSRD 30052
17-03-17 18:42:11.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.758 -07 000000478 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:42:11.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:11.768 -07 000000478 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:42:11.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:11.778 -07 000000478 INF: FPGA: Recv ZPIEZORD 25481
17-03-17 18:42:11.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:11.788 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -10.0 V.
17-03-17 18:42:11.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30046 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30046 (-132.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30037 (-132.5 uncal um), Max = 30052 (-132.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:42:11.788 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30046, posNoise = 6, negNoise = 9
17-03-17 18:42:11.788 -07 000000610 INF: Z Motor: After move to -0.133353, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:11.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:42:11.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:11.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:11.788 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:11.788 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:11.788 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:11.788 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:11.788 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:11.788 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:11.788 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:11.788 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:42:11.788 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:11.788 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:11.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:11.798 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:11.798 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:42:11.808 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:42:11.808 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:42:11.808 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:11.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:42:11.818 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:11.828 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:42:11.828 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-17 18:42:11.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29308 150\n [Camera]
17-03-17 18:42:12.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:12.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:12.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:12.418 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:12.418 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:12.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:42:12.418 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:12.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:12.418 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:12.418 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:12.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:42:12.608 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29308 779
17-03-17 18:42:12.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:12.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:42:12.808 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:42:12.808 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:12.808 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:42:12.808 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:42:12.808 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:12.808 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:12.808 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:42:12.808 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:12.818 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:42:12.948 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:12.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:12.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:13.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:13.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:13.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:13.088 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:13.088 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:42:13.098 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:13.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:42:13.138 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:13.138 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:13.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29308 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-17 18:42:13.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:13.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.912109375, Z-Position -0.133345230022485. ------
17-03-17 18:42:13.148 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:13.148 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13984 mm
17-03-17 18:42:13.148 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:13.148 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:42:13.148 -07 000000541 INF: Y Motor: Moving to 60.7426 mm, started at 59.9121 mm, delta = 0.8305 mm
17-03-17 18:42:13.148 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:13.148 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30547, sync = True, waitForSettling = False)
17-03-17 18:42:13.158 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:13.158 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:13.158 -07 000000476 INF: Z Motor: Moving to -0.139835 mm, started at -0.133345 mm, distance = -6.49 um
17-03-17 18:42:13.158 -07 000000501 INF: FPGA: Recv YRDPOS 122700
17-03-17 18:42:13.168 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:13.168 -07 000000541 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:13.168 -07 000000541 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:13.168 -07 000000541 INF: Y Motor: Moving 1329 steps2
17-03-17 18:42:13.168 -07 000000476 INF: FPGA: Xmit ZDACW 30547\n [Z Motor]
17-03-17 18:42:13.168 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:42:13.178 -07 000000476 INF: FPGA: 'ZDACW 30547' command took 3 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:42:13.178 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:13.188 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:13.198 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:13.198 -07 000000480 INF: FPGA: Recv ZDACR 30547
17-03-17 18:42:13.208 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:13.208 -07 000000476 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:42:13.378 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:13.378 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:42:13.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:42:13.468 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:42:13.468 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:13.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:42:13.468 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:42:13.468 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:13.468 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:13.478 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:13.478 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 18:42:13.478 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:42:13.558 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:42:13.558 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:42:13.588 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:13.598 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:42:13.598 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 18:42:13.598 -07 000000541 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:13.598 -07 000000541 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:42:13.598 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.830 mm, average velocity = 2.087 mm/sec
17-03-17 18:42:14.548 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:14.548 -07 000000478 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:42:14.558 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.558 -07 000000541 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:14.578 -07 000000541 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:14.578 -07 000000541 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:42:14.578 -07 000000541 INF: Y Motor: Moved to 60.7339 after 1423 ms (table move)
17-03-17 18:42:14.578 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139835 mm (DAC = 30547)
17-03-17 18:42:14.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.578 -07 000000501 INF: FPGA: Recv ZSGSRD 31055
17-03-17 18:42:14.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:14.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.588 -07 000000623 INF: FPGA: Recv ZSGSRD 31050
17-03-17 18:42:14.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.598 -07 000000626 INF: FPGA: Recv ZSGSRD 31052
17-03-17 18:42:14.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.608 -07 000000541 INF: FPGA: Recv ZSGSRD 31052
17-03-17 18:42:14.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.618 -07 000000501 INF: FPGA: Recv ZSGSRD 31063
17-03-17 18:42:14.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.628 -07 000000382 INF: FPGA: Recv ZSGSRD 31069
17-03-17 18:42:14.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.638 -07 000000512 INF: FPGA: Recv ZSGSRD 31056
17-03-17 18:42:14.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.648 -07 000000551 INF: FPGA: Recv ZSGSRD 31057
17-03-17 18:42:14.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.658 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.658 -07 000000561 INF: FPGA: Recv ZSGSRD 31054
17-03-17 18:42:14.668 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.668 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:14.668 -07 000000431 INF: FPGA: Recv ZSGSRD 31052
17-03-17 18:42:14.678 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.678 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:14.678 -07 000000012 INF: FPGA: Recv ZPIEZORD 26884
17-03-17 18:42:14.688 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:14.688 -07 000000462 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.661 V. Piezo Error = -9.2 V.
17-03-17 18:42:14.688 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31056 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31054 (-139.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 31050 (-139.0 uncal um), Max = 31069 (-139.1 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:42:14.688 -07 000000462 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31056, posNoise = 13, negNoise = 6
17-03-17 18:42:14.688 -07 000000462 INF: Z Motor: After move to -0.139835, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:14.688 -07 000000462 INF: Z Motor: Settle wait time = 1424 ms, measure time = 105 ms (allowed 150 ms), total time = 1529 ms
17-03-17 18:42:14.688 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:14.738 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:42:14.738 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:14.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:14.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:14.748 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:14.748 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:14.748 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:14.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:14.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:14.748 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:14.748 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:14.748 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:14.758 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:14.758 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:14.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:14.808 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:42:15.008 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:42:15.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:42:15.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:15.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 18:42:15.038 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:15.048 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:15.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:42:15.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:42:15.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:15.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:42:15.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:42:15.148 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:15.148 -07 000000512 INF: Autofocus start
17-03-17 18:42:15.148 -07 000000512 INF: MeasureProfile start
17-03-17 18:42:15.148 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:15.158 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:15.158 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:15.168 -07 000000512 INF: MeasureProfile done
17-03-17 18:42:15.168 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:42:15.168 -07 000000512 INF: Autofocus finished
17-03-17 18:42:15.338 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.014009,
17-03-17 18:42:15.358 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:15.358 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:42:15.358 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.139833684285663. ----------
17-03-17 18:42:15.358 -07 000000610 INF: Cycle	16	Tile	2	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:15.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29055, sync = True, waitForSettling = True)
17-03-17 18:42:15.368 -07 000000610 INF: Z Motor: Moving to -0.133005 mm, started at -0.139834 mm, distance = 6.83 um
17-03-17 18:42:15.388 -07 000000610 INF: FPGA: Xmit ZDACW 29055\n [Z Motor]
17-03-17 18:42:15.388 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:42:15.398 -07 000000610 INF: FPGA: 'ZDACW 29055' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:42:15.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:15.398 -07 000000478 INF: FPGA: Recv ZDACR 29055
17-03-17 18:42:15.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:15.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29992
17-03-17 18:42:15.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:15.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29989
17-03-17 18:42:15.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.578 -07 000000478 INF: FPGA: Recv ZSGSRD 29999
17-03-17 18:42:15.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.588 -07 000000623 INF: FPGA: Recv ZSGSRD 29997
17-03-17 18:42:15.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.598 -07 000000012 INF: FPGA: Recv ZSGSRD 29994
17-03-17 18:42:15.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29983
17-03-17 18:42:15.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.618 -07 000000501 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:42:15.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.628 -07 000000478 INF: FPGA: Recv ZSGSRD 29997
17-03-17 18:42:15.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.638 -07 000000462 INF: FPGA: Recv ZSGSRD 29990
17-03-17 18:42:15.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:15.668 -07 000000480 INF: FPGA: Recv ZSGSRD 29992
17-03-17 18:42:15.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:15.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:15.678 -07 000000480 INF: FPGA: Recv ZPIEZORD 25510
17-03-17 18:42:15.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:15.688 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.8 V.
17-03-17 18:42:15.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29993 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29993 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29983 (-132.2 uncal um), Max = 29999 (-132.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:42:15.688 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29993, posNoise = 6, negNoise = 10
17-03-17 18:42:15.688 -07 000000610 INF: Z Motor: After move to -0.133005, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:15.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 317 ms)
17-03-17 18:42:15.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:15.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:15.688 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:15.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:15.688 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:15.688 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:15.688 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:15.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:42:15.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:15.688 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:42:15.688 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:15.688 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:15.698 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:15.698 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:15.698 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:42:15.698 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:15.708 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:42:15.708 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:42:15.708 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:42:15.708 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:42:15.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29231 150\n [Camera]
17-03-17 18:42:15.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:16.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:42:16.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:42:16.308 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:16.308 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:42:16.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:42:16.318 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:16.318 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:16.318 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 18:42:16.318 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:16.318 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) start.
17-03-17 18:42:16.498 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29231 779
17-03-17 18:42:16.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:16.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:16.688 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:42:16.688 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 18:42:16.688 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:16.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:42:16.688 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:42:16.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:16.698 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:16.698 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:16.698 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:42:16.698 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:42:16.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:16.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:16.838 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:16.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:16.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:16.848 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:16.848 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:16.848 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:42:16.848 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:16.848 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 18:42:17.028 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:42:17.028 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:17.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29231 150' command took 2 ms to send, 1307 ms to get response, and 1325 ms overall
17-03-17 18:42:17.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:17.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133004746778971. ------
17-03-17 18:42:17.038 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:17.038 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13976 mm
17-03-17 18:42:17.038 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:17.038 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:42:17.038 -07 000000480 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:42:17.038 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30531, sync = True, waitForSettling = False)
17-03-17 18:42:17.038 -07 000000431 INF: Z Motor: Moving to -0.139762 mm, started at -0.133005 mm, distance = -6.76 um
17-03-17 18:42:17.038 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:17.048 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:17.048 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:17.048 -07 000000501 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:42:17.058 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:42:17.058 -07 000000480 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:17.058 -07 000000480 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:17.058 -07 000000480 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:42:17.058 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:17.068 -07 000000431 INF: FPGA: Xmit ZDACW 30531\n [Z Motor]
17-03-17 18:42:17.068 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:42:17.078 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:17.078 -07 000000431 INF: FPGA: 'ZDACW 30531' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 18:42:17.088 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:17.088 -07 000000382 INF: FPGA: Recv ZDACR 30531
17-03-17 18:42:17.098 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:42:17.098 -07 000000431 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:42:17.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:42:17.228 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:42:17.228 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:17.228 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:17.228 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:42:17.238 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:42:17.238 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:42:17.238 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:17.238 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:17.248 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:42:17.258 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:17.258 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 212 ms overall
17-03-17 18:42:17.448 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:42:17.448 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:42:17.488 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:17.488 -07 000000551 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:42:17.498 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:42:17.498 -07 000000480 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:17.498 -07 000000480 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:42:17.498 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 18:42:18.448 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:18.448 -07 000000623 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:42:18.458 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:18.458 -07 000000480 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:18.478 -07 000000480 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:18.478 -07 000000480 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:18.478 -07 000000480 INF: Y Motor: Moved to 61.5645 after 1434 ms (table move)
17-03-17 18:42:18.478 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139762 mm (DAC = 30531)
17-03-17 18:42:18.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.478 -07 000000623 INF: FPGA: Recv ZSGSRD 31044
17-03-17 18:42:18.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:18.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.488 -07 000000462 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:42:18.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.498 -07 000000462 INF: FPGA: Recv ZSGSRD 31041
17-03-17 18:42:18.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.508 -07 000000462 INF: FPGA: Recv ZSGSRD 31038
17-03-17 18:42:18.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.518 -07 000000462 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:42:18.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.528 -07 000000382 INF: FPGA: Recv ZSGSRD 31051
17-03-17 18:42:18.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.538 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.538 -07 000000382 INF: FPGA: Recv ZSGSRD 31053
17-03-17 18:42:18.548 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.548 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.548 -07 000000382 INF: FPGA: Recv ZSGSRD 31038
17-03-17 18:42:18.558 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.558 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.558 -07 000000382 INF: FPGA: Recv ZSGSRD 31050
17-03-17 18:42:18.568 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.568 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:18.568 -07 000000501 INF: FPGA: Recv ZSGSRD 31043
17-03-17 18:42:18.578 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.578 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:18.578 -07 000000438 INF: FPGA: Recv ZPIEZORD 26919
17-03-17 18:42:18.588 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:18.588 -07 000000012 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.659 V. Piezo Error = -9.1 V.
17-03-17 18:42:18.588 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31045 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31044 (-139.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31038 (-138.9 uncal um), Max = 31053 (-139.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:42:18.588 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31045, posNoise = 8, negNoise = 7
17-03-17 18:42:18.588 -07 000000012 INF: Z Motor: After move to -0.139762, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:18.588 -07 000000012 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:42:18.588 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:18.638 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:42:18.638 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:18.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:18.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:18.648 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:18.648 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:18.648 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:18.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:18.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:18.648 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:18.648 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:18.648 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:18.658 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:18.658 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:18.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:18.708 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:18.908 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:18.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:18.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:18.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:42:18.938 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:18.948 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:18.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:42:19.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:42:19.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:19.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:42:19.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:42:19.048 -07 000000623 INF: Autofocus start
17-03-17 18:42:19.048 -07 000000623 INF: MeasureProfile start
17-03-17 18:42:19.048 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:19.048 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:19.058 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:19.058 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:19.058 -07 000000623 INF: MeasureProfile done
17-03-17 18:42:19.058 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:42:19.058 -07 000000623 INF: Autofocus finished
17-03-17 18:42:19.258 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:19.258 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:19.258 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139763017952104. ----------
17-03-17 18:42:19.258 -07 000000610 INF: Cycle	16	Tile	3	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:19.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29038, sync = True, waitForSettling = True)
17-03-17 18:42:19.268 -07 000000610 INF: Z Motor: Moving to -0.132927 mm, started at -0.139763 mm, distance = 6.84 um
17-03-17 18:42:19.268 -07 000000610 INF: FPGA: Xmit ZDACW 29038\n [Z Motor]
17-03-17 18:42:19.268 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:42:19.278 -07 000000610 INF: FPGA: 'ZDACW 29038' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:42:19.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:19.278 -07 000000623 INF: FPGA: Recv ZDACR 29038
17-03-17 18:42:19.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:19.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.438 -07 000000382 INF: FPGA: Recv ZSGSRD 29981
17-03-17 18:42:19.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:19.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:42:19.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29983
17-03-17 18:42:19.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.468 -07 000000438 INF: FPGA: Recv ZSGSRD 29979
17-03-17 18:42:19.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.478 -07 000000438 INF: FPGA: Recv ZSGSRD 29981
17-03-17 18:42:19.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.488 -07 000000382 INF: FPGA: Recv ZSGSRD 29989
17-03-17 18:42:19.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.498 -07 000000012 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:42:19.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.508 -07 000000462 INF: FPGA: Recv ZSGSRD 29977
17-03-17 18:42:19.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29981
17-03-17 18:42:19.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:19.528 -07 000000012 INF: FPGA: Recv ZSGSRD 29987
17-03-17 18:42:19.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:19.538 -07 000000382 INF: FPGA: Recv ZPIEZORD 25544
17-03-17 18:42:19.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:19.548 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.7 V.
17-03-17 18:42:19.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29983 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29982 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29977 (-132.1 uncal um), Max = 29989 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:42:19.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29983, posNoise = 6, negNoise = 6
17-03-17 18:42:19.548 -07 000000610 INF: Z Motor: After move to -0.132927, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:19.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:42:19.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:19.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:19.548 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:19.548 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:19.548 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:19.548 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:19.548 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:19.548 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:19.548 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:19.548 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:19.548 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:19.548 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:19.558 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:42:19.558 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:19.558 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:42:19.558 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:19.568 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:42:19.568 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:42:19.568 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:42:19.578 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:42:19.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29215 150\n [Camera]
17-03-17 18:42:19.778 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:20.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:20.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:20.168 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:20.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:20.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:20.178 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:20.178 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:20.178 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:42:20.178 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:20.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:42:20.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29215 779
17-03-17 18:42:20.508 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:20.548 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:42:20.658 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 485 ms.
17-03-17 18:42:20.658 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:20.658 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 481 ms.
17-03-17 18:42:20.658 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 482 ms.
17-03-17 18:42:20.658 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:20.668 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:20.668 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 494 ms.
17-03-17 18:42:20.668 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:20.678 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 18:42:20.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:20.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:20.708 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:20.708 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.008536,
17-03-17 18:42:20.708 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:20.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:20.708 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:20.708 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:20.708 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:42:20.718 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:20.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) start.
17-03-17 18:42:20.898 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:42:20.898 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:20.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29215 150' command took 3 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-17 18:42:20.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:20.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132940504657554. ------
17-03-17 18:42:20.898 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:20.908 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13940 mm
17-03-17 18:42:20.908 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:20.908 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:42:20.908 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:42:20.908 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:20.908 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30452, sync = True, waitForSettling = False)
17-03-17 18:42:20.908 -07 000000480 INF: Z Motor: Moving to -0.139400 mm, started at -0.132941 mm, distance = -6.46 um
17-03-17 18:42:20.918 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:20.918 -07 000000480 INF: FPGA: Xmit ZDACW 30452\n [Z Motor]
17-03-17 18:42:20.918 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:42:20.928 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:20.928 -07 000000480 INF: FPGA: 'ZDACW 30452' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:42:20.928 -07 000000501 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:42:20.938 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:20.938 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:42:20.938 -07 000000551 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:20.938 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:20.938 -07 000000551 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:42:20.948 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:20.948 -07 000000462 INF: FPGA: Recv ZDACR 30452
17-03-17 18:42:20.958 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:20.958 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:42:20.958 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:21.088 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2567016040, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:42:21.088 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:42:21.088 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:21.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:42:21.088 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:42:21.088 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:21.098 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:21.098 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:21.098 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:42:21.098 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:42:21.138 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:21.138 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:42:21.328 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:42:21.328 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:42:21.368 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:21.368 -07 000000623 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:42:21.378 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:42:21.378 -07 000000551 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:21.378 -07 000000551 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:42:21.378 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:42:21.618 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:21.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:22.328 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:22.328 -07 000000623 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:42:22.338 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:22.338 -07 000000551 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:22.348 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:22.348 -07 000000551 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:22.348 -07 000000551 INF: Y Motor: Moved to 62.3960 after 1444 ms (table move)
17-03-17 18:42:22.358 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139400 mm (DAC = 30452)
17-03-17 18:42:22.358 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.358 -07 000000431 INF: FPGA: Recv ZSGSRD 31000
17-03-17 18:42:22.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:22.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.368 -07 000000541 INF: FPGA: Recv ZSGSRD 30997
17-03-17 18:42:22.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.378 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.378 -07 000000541 INF: FPGA: Recv ZSGSRD 30992
17-03-17 18:42:22.388 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.388 -07 000000541 INF: FPGA: Recv ZSGSRD 30996
17-03-17 18:42:22.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.398 -07 000000012 INF: FPGA: Recv ZSGSRD 30992
17-03-17 18:42:22.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.408 -07 000000012 INF: FPGA: Recv ZSGSRD 30989
17-03-17 18:42:22.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.418 -07 000000012 INF: FPGA: Recv ZSGSRD 30986
17-03-17 18:42:22.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.428 -07 000000012 INF: FPGA: Recv ZSGSRD 30983
17-03-17 18:42:22.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.438 -07 000000012 INF: FPGA: Recv ZSGSRD 30988
17-03-17 18:42:22.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:22.448 -07 000000551 INF: FPGA: Recv ZSGSRD 30994
17-03-17 18:42:22.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.458 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:22.458 -07 000000551 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 18:42:22.468 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:22.468 -07 000000382 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.647 V. Piezo Error = -9.2 V.
17-03-17 18:42:22.468 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30992 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30992 (-138.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30983 (-138.6 uncal um), Max = 31000 (-138.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:42:22.468 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30992, posNoise = 8, negNoise = 9
17-03-17 18:42:22.468 -07 000000382 INF: Z Motor: After move to -0.139400, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:22.468 -07 000000382 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:42:22.468 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:22.518 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 18:42:22.518 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:22.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:22.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:22.518 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:22.518 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:22.518 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:22.518 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:22.518 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:22.518 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:22.528 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:22.528 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:22.538 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:42:22.538 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:42:22.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:22.588 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:22.788 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:22.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:22.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:22.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:42:22.818 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:22.828 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:22.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:42:22.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:42:22.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:22.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:42:22.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:42:22.928 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:22.928 -07 000000382 INF: Autofocus start
17-03-17 18:42:22.928 -07 000000382 INF: MeasureProfile start
17-03-17 18:42:22.928 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:22.938 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:22.938 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:22.938 -07 000000382 INF: MeasureProfile done
17-03-17 18:42:22.938 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:42:22.938 -07 000000382 INF: Autofocus finished
17-03-17 18:42:23.138 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:23.138 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:23.138 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139422534708591. ----------
17-03-17 18:42:23.148 -07 000000610 INF: Cycle	16	Tile	4	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:23.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28947, sync = True, waitForSettling = True)
17-03-17 18:42:23.148 -07 000000610 INF: Z Motor: Moving to -0.132511 mm, started at -0.139423 mm, distance = 6.91 um
17-03-17 18:42:23.148 -07 000000610 INF: FPGA: Xmit ZDACW 28947\n [Z Motor]
17-03-17 18:42:23.148 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:42:23.158 -07 000000610 INF: FPGA: 'ZDACW 28947' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:42:23.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:23.158 -07 000000626 INF: FPGA: Recv ZDACR 28947
17-03-17 18:42:23.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:23.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.318 -07 000000478 INF: FPGA: Recv ZSGSRD 29920
17-03-17 18:42:23.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:23.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.328 -07 000000478 INF: FPGA: Recv ZSGSRD 29916
17-03-17 18:42:23.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.338 -07 000000012 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:42:23.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.348 -07 000000012 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:42:23.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.358 -07 000000012 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:42:23.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.368 -07 000000626 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:42:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.378 -07 000000626 INF: FPGA: Recv ZSGSRD 29921
17-03-17 18:42:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.388 -07 000000626 INF: FPGA: Recv ZSGSRD 29915
17-03-17 18:42:23.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29915
17-03-17 18:42:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:23.408 -07 000000626 INF: FPGA: Recv ZSGSRD 29910
17-03-17 18:42:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:23.418 -07 000000626 INF: FPGA: Recv ZPIEZORD 25458
17-03-17 18:42:23.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:23.428 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.8 V.
17-03-17 18:42:23.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29917 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29917 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29910 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:42:23.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29917, posNoise = 4, negNoise = 7
17-03-17 18:42:23.428 -07 000000610 INF: Z Motor: After move to -0.132511, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:23.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:42:23.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:23.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:23.428 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:23.428 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:23.428 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:23.428 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:23.428 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:23.428 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:23.438 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:23.438 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:23.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:23.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:23.438 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:23.438 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:23.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:42:23.438 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:23.448 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:42:23.448 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:42:23.448 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:42:23.448 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:23.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29123 150\n [Camera]
17-03-17 18:42:23.648 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:24.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:24.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:24.048 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:24.048 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:24.048 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:42:24.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:24.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:24.048 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:24.048 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:24.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:42:24.238 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29123 779
17-03-17 18:42:24.388 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:24.418 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:42:24.418 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:42:24.418 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:24.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:42:24.418 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:42:24.418 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:24.428 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:24.428 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:42:24.428 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:24.438 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:42:24.578 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:24.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:24.578 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:24.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:24.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:42:24.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:24.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:24.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:24.578 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:24.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:42:24.768 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:24.768 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:24.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29123 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-17 18:42:24.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:24.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132516506656198. ------
17-03-17 18:42:24.778 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13921 mm
17-03-17 18:42:24.778 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:24.778 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:24.778 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30409, sync = True, waitForSettling = False)
17-03-17 18:42:24.778 -07 000000478 INF: Z Motor: Moving to -0.139203 mm, started at -0.132517 mm, distance = -6.69 um
17-03-17 18:42:24.778 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:42:24.778 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:42:24.778 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:24.788 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:42:24.788 -07 000000478 INF: FPGA: Xmit ZDACW 30409\n [Z Motor]
17-03-17 18:42:24.788 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:42:24.798 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:24.798 -07 000000478 INF: FPGA: 'ZDACW 30409' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:42:24.798 -07 000000431 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:42:24.808 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:24.808 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:42:24.808 -07 000000541 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:24.808 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:24.808 -07 000000541 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:42:24.818 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:24.818 -07 000000501 INF: FPGA: Recv ZDACR 30409
17-03-17 18:42:24.828 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:24.828 -07 000000478 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:42:24.828 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:24.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:42:24.958 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:42:24.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:24.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:24.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:42:24.958 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:42:24.958 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:24.958 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:24.968 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:42:24.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:42:25.008 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:25.008 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 18:42:25.198 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:42:25.198 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:42:25.238 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:25.238 -07 000000431 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:42:25.248 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:25.248 -07 000000541 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:25.248 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:42:25.248 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.123 mm/sec
17-03-17 18:42:26.078 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.996267,
17-03-17 18:42:26.198 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:26.198 -07 000000501 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:42:26.208 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:26.208 -07 000000541 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:26.228 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:26.228 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:26.228 -07 000000541 INF: Y Motor: Moved to 63.2251 after 1448 ms (table move)
17-03-17 18:42:26.228 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139203 mm (DAC = 30409)
17-03-17 18:42:26.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.238 -07 000000382 INF: FPGA: Recv ZSGSRD 30960
17-03-17 18:42:26.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:42:26.238 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.238 -07 000000382 INF: FPGA: Recv ZSGSRD 30955
17-03-17 18:42:26.248 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:42:26.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.248 -07 000000382 INF: FPGA: Recv ZSGSRD 30958
17-03-17 18:42:26.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.258 -07 000000382 INF: FPGA: Recv ZSGSRD 30966
17-03-17 18:42:26.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30961
17-03-17 18:42:26.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.278 -07 000000012 INF: FPGA: Recv ZSGSRD 30963
17-03-17 18:42:26.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.288 -07 000000012 INF: FPGA: Recv ZSGSRD 30960
17-03-17 18:42:26.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.298 -07 000000012 INF: FPGA: Recv ZSGSRD 30962
17-03-17 18:42:26.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.308 -07 000000012 INF: FPGA: Recv ZSGSRD 30963
17-03-17 18:42:26.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:26.318 -07 000000012 INF: FPGA: Recv ZSGSRD 30954
17-03-17 18:42:26.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.328 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:26.328 -07 000000012 INF: FPGA: Recv ZPIEZORD 26859
17-03-17 18:42:26.338 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:26.338 -07 000000476 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -9.0 V.
17-03-17 18:42:26.338 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30960 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30960 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30954 (-138.4 uncal um), Max = 30966 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:42:26.338 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30960, posNoise = 6, negNoise = 6
17-03-17 18:42:26.338 -07 000000476 INF: Z Motor: After move to -0.139203, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:26.338 -07 000000476 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-17 18:42:26.338 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:26.388 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:42:26.388 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:26.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:26.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:26.388 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:26.388 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:26.388 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:26.388 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:26.388 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:26.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:26.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:26.398 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:26.398 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:42:26.398 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:42:26.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:26.458 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:26.618 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:26.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:26.658 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:26.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:26.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:26.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:42:26.698 -07 000000476 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:42:26.698 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:26.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 294 ms overall
17-03-17 18:42:26.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:42:26.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:26.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:42:26.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:42:26.798 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:26.798 -07 000000431 INF: Autofocus start
17-03-17 18:42:26.798 -07 000000431 INF: MeasureProfile start
17-03-17 18:42:26.798 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:26.808 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:26.808 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:26.808 -07 000000431 INF: MeasureProfile done
17-03-17 18:42:26.808 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:42:26.808 -07 000000431 INF: Autofocus finished
17-03-17 18:42:27.008 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:27.008 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 18:42:27.018 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139216959920054. ----------
17-03-17 18:42:27.018 -07 000000610 INF: Cycle	16	Tile	5	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:27.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28934, sync = True, waitForSettling = True)
17-03-17 18:42:27.018 -07 000000610 INF: Z Motor: Moving to -0.132451 mm, started at -0.139217 mm, distance = 6.77 um
17-03-17 18:42:27.018 -07 000000610 INF: FPGA: Xmit ZDACW 28934\n [Z Motor]
17-03-17 18:42:27.018 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:42:27.028 -07 000000610 INF: FPGA: 'ZDACW 28934' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:27.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:27.028 -07 000000438 INF: FPGA: Recv ZDACR 28934
17-03-17 18:42:27.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:27.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29906
17-03-17 18:42:27.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:27.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29903
17-03-17 18:42:27.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.208 -07 000000382 INF: FPGA: Recv ZSGSRD 29904
17-03-17 18:42:27.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.218 -07 000000626 INF: FPGA: Recv ZSGSRD 29907
17-03-17 18:42:27.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.228 -07 000000478 INF: FPGA: Recv ZSGSRD 29907
17-03-17 18:42:27.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.238 -07 000000501 INF: FPGA: Recv ZSGSRD 29907
17-03-17 18:42:27.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29909
17-03-17 18:42:27.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29910
17-03-17 18:42:27.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.268 -07 000000501 INF: FPGA: Recv ZSGSRD 29911
17-03-17 18:42:27.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:27.278 -07 000000478 INF: FPGA: Recv ZSGSRD 29904
17-03-17 18:42:27.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:27.288 -07 000000476 INF: FPGA: Recv ZPIEZORD 25504
17-03-17 18:42:27.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:27.298 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.7 V.
17-03-17 18:42:27.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29907 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29907 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29903 (-131.6 uncal um), Max = 29911 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:42:27.298 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29907, posNoise = 4, negNoise = 4
17-03-17 18:42:27.298 -07 000000610 INF: Z Motor: After move to -0.132451, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:27.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:42:27.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:27.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:27.298 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:27.298 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:27.298 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:27.298 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:27.298 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:27.298 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:27.298 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:27.298 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:27.298 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:27.298 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:27.308 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:42:27.308 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:27.308 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:42:27.308 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:27.318 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:42:27.318 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:27.318 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:42:27.318 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:42:27.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29110 150\n [Camera]
17-03-17 18:42:27.518 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:27.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:42:27.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:42:27.908 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:27.908 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:27.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:42:27.918 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:42:27.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:42:27.918 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:27.918 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:27.918 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:42:28.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29110 779
17-03-17 18:42:28.248 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:28.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:42:28.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:42:28.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:42:28.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:28.288 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:42:28.288 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:28.298 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:28.298 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:42:28.298 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:28.298 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:42:28.438 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:28.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:28.448 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:28.448 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:28.448 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:42:28.448 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:28.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:28.448 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:28.448 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:28.448 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:42:28.638 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:42:28.638 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:28.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29110 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:42:28.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:28.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.13245226453478. ------
17-03-17 18:42:28.638 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13899 mm
17-03-17 18:42:28.638 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:28.638 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:28.638 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:42:28.638 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:42:28.648 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:28.648 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:28.648 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:28.648 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30361, sync = True, waitForSettling = False)
17-03-17 18:42:28.648 -07 000000478 INF: Z Motor: Moving to -0.138984 mm, started at -0.132452 mm, distance = -6.53 um
17-03-17 18:42:28.648 -07 000000476 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:42:28.658 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:28.658 -07 000000501 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:28.658 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:28.658 -07 000000501 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:42:28.658 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:28.668 -07 000000478 INF: FPGA: Xmit ZDACW 30361\n [Z Motor]
17-03-17 18:42:28.668 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:42:28.678 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:28.678 -07 000000478 INF: FPGA: 'ZDACW 30361' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:28.688 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:28.688 -07 000000012 INF: FPGA: Recv ZDACR 30361
17-03-17 18:42:28.698 -07 000000478 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:42:28.698 -07 000000478 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:42:28.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:42:28.828 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:42:28.828 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:28.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:42:28.828 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:42:28.828 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:28.838 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:28.838 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:42:28.838 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:42:28.838 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:42:28.858 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:28.858 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 18:42:29.048 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:42:29.048 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:42:29.088 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:29.088 -07 000000478 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:42:29.098 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:42:29.098 -07 000000501 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:29.098 -07 000000501 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:42:29.098 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:42:30.048 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:30.048 -07 000000476 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:42:30.058 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:30.058 -07 000000501 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:30.068 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:30.068 -07 000000501 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:30.068 -07 000000501 INF: Y Motor: Moved to 64.0576 after 1427 ms (table move)
17-03-17 18:42:30.078 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138984 mm (DAC = 30361)
17-03-17 18:42:30.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.078 -07 000000501 INF: FPGA: Recv ZSGSRD 30919
17-03-17 18:42:30.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:42:30.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.088 -07 000000551 INF: FPGA: Recv ZSGSRD 30931
17-03-17 18:42:30.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.098 -07 000000541 INF: FPGA: Recv ZSGSRD 30921
17-03-17 18:42:30.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.108 -07 000000501 INF: FPGA: Recv ZSGSRD 30930
17-03-17 18:42:30.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.118 -07 000000626 INF: FPGA: Recv ZSGSRD 30926
17-03-17 18:42:30.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.128 -07 000000626 INF: FPGA: Recv ZSGSRD 30930
17-03-17 18:42:30.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.138 -07 000000478 INF: FPGA: Recv ZSGSRD 30921
17-03-17 18:42:30.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.148 -07 000000478 INF: FPGA: Recv ZSGSRD 30915
17-03-17 18:42:30.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.158 -07 000000626 INF: FPGA: Recv ZSGSRD 30924
17-03-17 18:42:30.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:30.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30928
17-03-17 18:42:30.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.178 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:30.178 -07 000000541 INF: FPGA: Recv ZPIEZORD 26848
17-03-17 18:42:30.188 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.188 -07 000000438 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -9.0 V.
17-03-17 18:42:30.188 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30924 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30925 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30915 (-138.1 uncal um), Max = 30931 (-138.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:42:30.188 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30924, posNoise = 7, negNoise = 9
17-03-17 18:42:30.188 -07 000000438 INF: Z Motor: After move to -0.138984, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:30.188 -07 000000438 INF: Z Motor: Settle wait time = 1430 ms, measure time = 110 ms (allowed 150 ms), total time = 1540 ms
17-03-17 18:42:30.188 -07 000000438 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:30.228 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:42:30.228 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:30.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:30.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:30.228 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:30.228 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:30.228 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:30.228 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:30.238 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:30.238 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:30.238 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:30.238 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:30.248 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:42:30.248 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:30.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:30.288 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:30.488 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:30.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:30.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:30.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 18:42:30.528 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:30.528 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:30.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:42:30.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:42:30.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:30.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:30.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:42:30.628 -07 000000382 INF: Autofocus start
17-03-17 18:42:30.628 -07 000000382 INF: MeasureProfile start
17-03-17 18:42:30.628 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:30.628 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:30.638 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:30.638 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:30.638 -07 000000382 INF: MeasureProfile done
17-03-17 18:42:30.638 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:42:30.638 -07 000000382 INF: Autofocus finished
17-03-17 18:42:30.838 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:30.838 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:30.838 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138985688282951. ----------
17-03-17 18:42:30.838 -07 000000610 INF: Cycle	16	Tile	6	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:30.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28869, sync = True, waitForSettling = True)
17-03-17 18:42:30.848 -07 000000610 INF: Z Motor: Moving to -0.132154 mm, started at -0.138986 mm, distance = 6.83 um
17-03-17 18:42:30.848 -07 000000610 INF: FPGA: Xmit ZDACW 28869\n [Z Motor]
17-03-17 18:42:30.848 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:42:30.858 -07 000000610 INF: FPGA: 'ZDACW 28869' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:30.858 -07 000000478 INF: FPGA: Recv ZDACR 28869
17-03-17 18:42:30.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:30.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:31.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.018 -07 000000501 INF: FPGA: Recv ZSGSRD 29861
17-03-17 18:42:31.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:31.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.028 -07 000000478 INF: FPGA: Recv ZSGSRD 29861
17-03-17 18:42:31.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.038 -07 000000478 INF: FPGA: Recv ZSGSRD 29859
17-03-17 18:42:31.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.048 -07 000000476 INF: FPGA: Recv ZSGSRD 29861
17-03-17 18:42:31.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.058 -07 000000438 INF: FPGA: Recv ZSGSRD 29863
17-03-17 18:42:31.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.068 -07 000000438 INF: FPGA: Recv ZSGSRD 29861
17-03-17 18:42:31.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.078 -07 000000438 INF: FPGA: Recv ZSGSRD 29864
17-03-17 18:42:31.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.088 -07 000000438 INF: FPGA: Recv ZSGSRD 29859
17-03-17 18:42:31.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.098 -07 000000623 INF: FPGA: Recv ZSGSRD 29859
17-03-17 18:42:31.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:31.108 -07 000000438 INF: FPGA: Recv ZSGSRD 29861
17-03-17 18:42:31.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:31.118 -07 000000382 INF: FPGA: Recv ZPIEZORD 25443
17-03-17 18:42:31.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:31.128 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -9.7 V.
17-03-17 18:42:31.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29861 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29861 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29859 (-131.4 uncal um), Max = 29864 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:42:31.128 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29861, posNoise = 3, negNoise = 2
17-03-17 18:42:31.128 -07 000000610 INF: Z Motor: After move to -0.132154, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:31.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:42:31.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:31.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:31.128 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:31.128 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:31.128 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:31.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:31.128 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:31.128 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:31.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:31.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:31.128 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:31.128 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:31.128 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:42:31.128 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:31.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:42:31.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:31.138 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:42:31.138 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:42:31.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:42:31.138 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:42:31.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29046 150\n [Camera]
17-03-17 18:42:31.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:31.448 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.003063,
17-03-17 18:42:31.618 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:31.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:31.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:31.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:31.738 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:31.738 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:31.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:42:31.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:31.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:31.748 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:31.748 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:31.748 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:42:31.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29046 779
17-03-17 18:42:32.078 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:32.118 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:42:32.118 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:42:32.118 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:32.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:42:32.118 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:42:32.118 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:32.128 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:32.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:32.128 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:42:32.128 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:42:32.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:32.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:32.278 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:32.278 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:32.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:42:32.278 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:32.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:32.278 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:32.278 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:32.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:42:32.468 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:32.468 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:32.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29046 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:42:32.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:32.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132156750776259. ------
17-03-17 18:42:32.468 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13868 mm
17-03-17 18:42:32.468 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:32.468 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:32.468 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30295, sync = True, waitForSettling = False)
17-03-17 18:42:32.468 -07 000000623 INF: Z Motor: Moving to -0.138682 mm, started at -0.132157 mm, distance = -6.52 um
17-03-17 18:42:32.468 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:42:32.468 -07 000000476 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:42:32.468 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:32.478 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:32.478 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:32.478 -07 000000382 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:42:32.488 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:32.488 -07 000000476 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:32.488 -07 000000623 INF: FPGA: Xmit ZDACW 30295\n [Z Motor]
17-03-17 18:42:32.488 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:42:32.488 -07 000000476 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:32.488 -07 000000476 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:42:32.498 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:32.498 -07 000000623 INF: FPGA: 'ZDACW 30295' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:42:32.508 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:32.508 -07 000000382 INF: FPGA: Recv ZDACR 30295
17-03-17 18:42:32.518 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:32.518 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:42:32.518 -07 000000623 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:42:32.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:42:32.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:42:32.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:32.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:42:32.658 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:42:32.658 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:32.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:42:32.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:42:32.668 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:32.668 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:42:32.698 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:32.698 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 226 ms overall
17-03-17 18:42:32.888 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:42:32.888 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 400 ms overall
17-03-17 18:42:32.918 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:32.928 -07 000000462 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:42:32.928 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:42:32.928 -07 000000476 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:32.928 -07 000000476 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:42:32.928 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.835 mm, average velocity = 2.087 mm/sec
17-03-17 18:42:33.878 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:33.878 -07 000000569 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:42:33.888 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:33.888 -07 000000476 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:33.908 -07 000000476 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:33.908 -07 000000476 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:33.908 -07 000000476 INF: Y Motor: Moved to 64.8794 after 1432 ms (table move)
17-03-17 18:42:33.908 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138682 mm (DAC = 30295)
17-03-17 18:42:33.908 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.908 -07 000000462 INF: FPGA: Recv ZSGSRD 30879
17-03-17 18:42:33.918 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:33.918 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.918 -07 000000480 INF: FPGA: Recv ZSGSRD 30871
17-03-17 18:42:33.928 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.928 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.928 -07 000000462 INF: FPGA: Recv ZSGSRD 30871
17-03-17 18:42:33.938 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.938 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30875
17-03-17 18:42:33.948 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.948 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30880
17-03-17 18:42:33.958 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.958 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.958 -07 000000478 INF: FPGA: Recv ZSGSRD 30886
17-03-17 18:42:33.968 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.968 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.968 -07 000000626 INF: FPGA: Recv ZSGSRD 30883
17-03-17 18:42:33.978 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.978 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.978 -07 000000561 INF: FPGA: Recv ZSGSRD 30878
17-03-17 18:42:33.988 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.988 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.988 -07 000000382 INF: FPGA: Recv ZSGSRD 30877
17-03-17 18:42:33.998 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:33.998 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:33.998 -07 000000623 INF: FPGA: Recv ZSGSRD 30874
17-03-17 18:42:34.008 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.008 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:34.008 -07 000000462 INF: FPGA: Recv ZPIEZORD 26798
17-03-17 18:42:34.018 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.018 -07 000000501 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -9.0 V.
17-03-17 18:42:34.018 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30877 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30878 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30871 (-137.8 uncal um), Max = 30886 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:42:34.018 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30877, posNoise = 9, negNoise = 6
17-03-17 18:42:34.018 -07 000000501 INF: Z Motor: After move to -0.138682, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:34.018 -07 000000501 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:42:34.018 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:34.068 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:42:34.068 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:34.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:34.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:34.068 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:34.068 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:34.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:34.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:34.068 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:34.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:34.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:42:34.078 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:34.088 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:42:34.088 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:42:34.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:34.138 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:34.328 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:34.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:34.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:34.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:42:34.368 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:34.368 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:34.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:42:34.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 18:42:34.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:34.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:34.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:42:34.478 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:34.478 -07 000000462 INF: Autofocus start
17-03-17 18:42:34.478 -07 000000462 INF: MeasureProfile start
17-03-17 18:42:34.478 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:34.488 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:34.488 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:34.488 -07 000000462 INF: MeasureProfile done
17-03-17 18:42:34.488 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:42:34.488 -07 000000462 INF: Autofocus finished
17-03-17 18:42:34.688 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:34.688 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:34.688 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138683750312288. ----------
17-03-17 18:42:34.698 -07 000000610 INF: Cycle	16	Tile	7	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:34.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28819, sync = True, waitForSettling = True)
17-03-17 18:42:34.698 -07 000000610 INF: Z Motor: Moving to -0.131925 mm, started at -0.138684 mm, distance = 6.76 um
17-03-17 18:42:34.698 -07 000000610 INF: FPGA: Xmit ZDACW 28819\n [Z Motor]
17-03-17 18:42:34.698 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:42:34.708 -07 000000610 INF: FPGA: 'ZDACW 28819' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:42:34.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:34.708 -07 000000431 INF: FPGA: Recv ZDACR 28819
17-03-17 18:42:34.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:34.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.868 -07 000000476 INF: FPGA: Recv ZSGSRD 29824
17-03-17 18:42:34.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.878 -07 000000551 INF: FPGA: Recv ZSGSRD 29824
17-03-17 18:42:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.888 -07 000000561 INF: FPGA: Recv ZSGSRD 29828
17-03-17 18:42:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.898 -07 000000476 INF: FPGA: Recv ZSGSRD 29828
17-03-17 18:42:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29827
17-03-17 18:42:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.918 -07 000000541 INF: FPGA: Recv ZSGSRD 29828
17-03-17 18:42:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.928 -07 000000623 INF: FPGA: Recv ZSGSRD 29827
17-03-17 18:42:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.938 -07 000000561 INF: FPGA: Recv ZSGSRD 29829
17-03-17 18:42:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.948 -07 000000561 INF: FPGA: Recv ZSGSRD 29825
17-03-17 18:42:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:34.958 -07 000000561 INF: FPGA: Recv ZSGSRD 29819
17-03-17 18:42:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:34.968 -07 000000561 INF: FPGA: Recv ZPIEZORD 25427
17-03-17 18:42:34.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:34.978 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.7 V.
17-03-17 18:42:34.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29826 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29827 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29819 (-131.1 uncal um), Max = 29829 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:42:34.978 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29826, posNoise = 3, negNoise = 7
17-03-17 18:42:34.978 -07 000000610 INF: Z Motor: After move to -0.131925, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:34.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:42:34.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:34.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:34.978 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:34.978 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:34.978 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:34.978 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:34.988 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:34.988 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:42:34.988 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:34.988 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:34.988 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 18:42:34.988 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:34.988 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:34.988 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:34.988 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:42:34.988 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:34.998 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:42:34.998 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:34.998 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:42:34.998 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:42:34.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28996 150\n [Camera]
17-03-17 18:42:35.198 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:42:35.598 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:35.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:35.598 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:35.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:35.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:42:35.598 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:35.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:35.598 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:35.598 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:35.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:42:35.788 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28996 779
17-03-17 18:42:35.938 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:35.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:42:35.968 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:42:35.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:35.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:42:35.968 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:42:35.968 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:35.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:35.978 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:35.978 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:42:35.988 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:42:36.128 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:36.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:36.128 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:36.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:36.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:36.298 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:36.298 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:36.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:42:36.298 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:36.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:42:36.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:36.318 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:36.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28996 150' command took 2 ms to send, 1314 ms to get response, and 1317 ms overall
17-03-17 18:42:36.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:36.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131931903351297. ------
17-03-17 18:42:36.318 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:36.318 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13854 mm
17-03-17 18:42:36.328 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:36.328 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:36.328 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:42:36.328 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:36.328 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:42:36.328 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:42:36.328 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30264, sync = True, waitForSettling = False)
17-03-17 18:42:36.328 -07 000000551 INF: Z Motor: Moving to -0.138540 mm, started at -0.131932 mm, distance = -6.61 um
17-03-17 18:42:36.338 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:36.338 -07 000000561 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:42:36.348 -07 000000551 INF: FPGA: Xmit ZDACW 30264\n [Z Motor]
17-03-17 18:42:36.348 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:42:36.348 -07 000000480 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:36.348 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:42:36.348 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:36.348 -07 000000480 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:42:36.358 -07 000000551 INF: FPGA: 'ZDACW 30264' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:42:36.358 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:36.358 -07 000000478 INF: FPGA: Recv ZDACR 30264
17-03-17 18:42:36.368 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:36.368 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:36.368 -07 000000551 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:42:36.528 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:36.528 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:42:36.618 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:36.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:36.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:42:36.678 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:42:36.678 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:36.678 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:36.678 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 555 ms.
17-03-17 18:42:36.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:42:36.688 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:42:36.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:36.688 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:36.698 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:42:36.738 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:42:36.738 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:42:36.778 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:36.778 -07 000000438 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:42:36.788 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:42:36.788 -07 000000480 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:36.788 -07 000000480 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:42:36.788 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 18:42:36.818 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.986717,
17-03-17 18:42:37.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:37.738 -07 000000569 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:42:37.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:37.748 -07 000000480 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:37.768 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:37.768 -07 000000480 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:37.768 -07 000000480 INF: Y Motor: Moved to 65.7148 after 1436 ms (table move)
17-03-17 18:42:37.768 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138540 mm (DAC = 30264)
17-03-17 18:42:37.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.768 -07 000000476 INF: FPGA: Recv ZSGSRD 30851
17-03-17 18:42:37.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:37.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.778 -07 000000561 INF: FPGA: Recv ZSGSRD 30850
17-03-17 18:42:37.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.788 -07 000000012 INF: FPGA: Recv ZSGSRD 30853
17-03-17 18:42:37.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.798 -07 000000551 INF: FPGA: Recv ZSGSRD 30860
17-03-17 18:42:37.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.808 -07 000000561 INF: FPGA: Recv ZSGSRD 30860
17-03-17 18:42:37.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.818 -07 000000569 INF: FPGA: Recv ZSGSRD 30858
17-03-17 18:42:37.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.828 -07 000000480 INF: FPGA: Recv ZSGSRD 30852
17-03-17 18:42:37.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.838 -07 000000476 INF: FPGA: Recv ZSGSRD 30851
17-03-17 18:42:37.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.848 -07 000000561 INF: FPGA: Recv ZSGSRD 30855
17-03-17 18:42:37.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:37.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30855
17-03-17 18:42:37.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.868 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:37.868 -07 000000478 INF: FPGA: Recv ZPIEZORD 26783
17-03-17 18:42:37.878 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:37.878 -07 000000382 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.0 V.
17-03-17 18:42:37.878 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30854 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30850 (-137.7 uncal um), Max = 30860 (-137.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:42:37.878 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30854, posNoise = 6, negNoise = 4
17-03-17 18:42:37.878 -07 000000382 INF: Z Motor: After move to -0.138540, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:37.878 -07 000000382 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:42:37.878 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:37.928 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:42:37.928 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:37.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:37.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:37.928 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:37.928 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:37.928 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:37.928 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:37.928 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:37.938 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:37.938 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:42:37.938 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:37.948 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:37.948 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:37.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:37.988 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:38.188 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:38.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:38.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:38.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 18:42:38.228 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:38.228 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:38.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:42:38.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:42:38.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:38.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:38.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:42:38.328 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:38.328 -07 000000382 INF: Autofocus start
17-03-17 18:42:38.328 -07 000000382 INF: MeasureProfile start
17-03-17 18:42:38.328 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:38.338 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:42:38.338 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:38.338 -07 000000382 INF: MeasureProfile done
17-03-17 18:42:38.338 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:42:38.338 -07 000000382 INF: Autofocus finished
17-03-17 18:42:38.538 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:38.538 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:38.538 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138535993433028. ----------
17-03-17 18:42:38.548 -07 000000610 INF: Cycle	16	Tile	8	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:38.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28759, sync = True, waitForSettling = True)
17-03-17 18:42:38.548 -07 000000610 INF: Z Motor: Moving to -0.131650 mm, started at -0.138536 mm, distance = 6.89 um
17-03-17 18:42:38.548 -07 000000610 INF: FPGA: Xmit ZDACW 28759\n [Z Motor]
17-03-17 18:42:38.548 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:42:38.558 -07 000000610 INF: FPGA: 'ZDACW 28759' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:42:38.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:38.558 -07 000000551 INF: FPGA: Recv ZDACR 28759
17-03-17 18:42:38.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.718 -07 000000551 INF: FPGA: Recv ZSGSRD 29779
17-03-17 18:42:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.728 -07 000000551 INF: FPGA: Recv ZSGSRD 29789
17-03-17 18:42:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.738 -07 000000012 INF: FPGA: Recv ZSGSRD 29779
17-03-17 18:42:38.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.748 -07 000000551 INF: FPGA: Recv ZSGSRD 29780
17-03-17 18:42:38.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.758 -07 000000012 INF: FPGA: Recv ZSGSRD 29784
17-03-17 18:42:38.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.768 -07 000000480 INF: FPGA: Recv ZSGSRD 29784
17-03-17 18:42:38.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29784
17-03-17 18:42:38.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.788 -07 000000541 INF: FPGA: Recv ZSGSRD 29782
17-03-17 18:42:38.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29786
17-03-17 18:42:38.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:38.808 -07 000000541 INF: FPGA: Recv ZSGSRD 29786
17-03-17 18:42:38.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:38.818 -07 000000480 INF: FPGA: Recv ZPIEZORD 25399
17-03-17 18:42:38.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:38.828 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.6 V.
17-03-17 18:42:38.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29783 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29784 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29779 (-130.8 uncal um), Max = 29789 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:42:38.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29783, posNoise = 6, negNoise = 4
17-03-17 18:42:38.828 -07 000000610 INF: Z Motor: After move to -0.131650, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:38.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:42:38.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:38.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:38.828 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:38.828 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:38.828 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:38.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:38.828 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:38.828 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:38.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:38.828 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:38.828 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:38.828 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:38.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:42:38.838 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:38.838 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:42:38.838 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:38.848 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 18:42:38.848 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:42:38.848 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:42:38.848 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:42:38.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28936 150\n [Camera]
17-03-17 18:42:39.048 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:39.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:39.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:39.448 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:39.448 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:39.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:39.448 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:39.448 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:39.448 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 18:42:39.448 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:39.448 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) start.
17-03-17 18:42:39.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28936 779
17-03-17 18:42:39.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:39.828 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:42:39.828 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:42:39.828 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:39.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:42:39.828 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:42:39.828 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:39.838 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:42:39.838 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:42:39.838 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:42:39.838 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:42:39.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:39.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:39.978 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:39.978 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:39.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:39.978 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:39.988 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:39.988 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:42:39.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:39.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:42:40.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:40.168 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:40.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28936 150' command took 2 ms to send, 1314 ms to get response, and 1317 ms overall
17-03-17 18:42:40.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:40.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131655662229202. ------
17-03-17 18:42:40.178 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13789 mm
17-03-17 18:42:40.178 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:40.178 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:40.178 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:40.178 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:42:40.178 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:42:40.178 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30122, sync = True, waitForSettling = False)
17-03-17 18:42:40.178 -07 000000382 INF: Z Motor: Moving to -0.137890 mm, started at -0.131656 mm, distance = -6.23 um
17-03-17 18:42:40.188 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:40.188 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:40.188 -07 000000501 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:42:40.198 -07 000000382 INF: FPGA: Xmit ZDACW 30122\n [Z Motor]
17-03-17 18:42:40.198 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:42:40.198 -07 000000438 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:40.198 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:42:40.198 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:40.198 -07 000000438 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:42:40.208 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:40.208 -07 000000382 INF: FPGA: 'ZDACW 30122' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:42:40.218 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:40.228 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:40.228 -07 000000626 INF: FPGA: Recv ZDACR 30122
17-03-17 18:42:40.238 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:40.238 -07 000000382 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:42:40.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:42:40.368 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:42:40.368 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:40.368 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:42:40.368 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:42:40.368 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:40.378 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:42:40.378 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:42:40.378 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:42:40.388 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:42:40.408 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:40.408 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:42:40.588 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:42:40.588 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:42:40.648 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:40.648 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:42:40.658 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:40.658 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:40.658 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:42:40.658 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.137 mm/sec
17-03-17 18:42:41.608 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:41.608 -07 000000382 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:42:41.618 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:41.618 -07 000000438 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:41.618 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:41.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:41.638 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:41.638 -07 000000438 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:42:41.638 -07 000000438 INF: Y Motor: Moved to 66.5400 after 1456 ms (table move)
17-03-17 18:42:41.638 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137890 mm (DAC = 30122)
17-03-17 18:42:41.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.638 -07 000000476 INF: FPGA: Recv ZSGSRD 30754
17-03-17 18:42:41.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:41.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.648 -07 000000561 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:42:41.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.658 -07 000000626 INF: FPGA: Recv ZSGSRD 30750
17-03-17 18:42:41.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:41.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.668 -07 000000551 INF: FPGA: Recv ZSGSRD 30760
17-03-17 18:42:41.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.678 -07 000000480 INF: FPGA: Recv ZSGSRD 30756
17-03-17 18:42:41.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.688 -07 000000012 INF: FPGA: Recv ZSGSRD 30749
17-03-17 18:42:41.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30752
17-03-17 18:42:41.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.708 -07 000000551 INF: FPGA: Recv ZSGSRD 30747
17-03-17 18:42:41.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.718 -07 000000012 INF: FPGA: Recv ZSGSRD 30760
17-03-17 18:42:41.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:41.728 -07 000000438 INF: FPGA: Recv ZSGSRD 30760
17-03-17 18:42:41.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.738 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:41.738 -07 000000541 INF: FPGA: Recv ZPIEZORD 26644
17-03-17 18:42:41.748 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:41.748 -07 000000431 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.0 V.
17-03-17 18:42:41.748 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30756 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30755 (-137.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30747 (-137.1 uncal um), Max = 30767 (-137.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:42:41.748 -07 000000431 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30756, posNoise = 11, negNoise = 9
17-03-17 18:42:41.748 -07 000000431 INF: Z Motor: After move to -0.137890, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:41.748 -07 000000431 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-17 18:42:41.748 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:41.798 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-17 18:42:41.798 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:41.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:41.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:41.798 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:41.798 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:41.808 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:41.808 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:41.808 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:41.808 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:41.808 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:41.808 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:41.818 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:42:41.818 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:41.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:41.868 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:42.068 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:42.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:42.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:42.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:42:42.108 -07 000000478 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:42:42.108 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:42.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 18:42:42.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:42:42.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:42.188 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.994908,
17-03-17 18:42:42.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:42.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:42:42.208 -07 000000476 INF: Autofocus start
17-03-17 18:42:42.208 -07 000000476 INF: MeasureProfile start
17-03-17 18:42:42.228 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:42.228 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:42.228 -07 000000476 INF: MeasureProfile done
17-03-17 18:42:42.228 -07 000000476 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:42:42.228 -07 000000476 INF: Autofocus finished
17-03-17 18:42:42.238 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:42:42.248 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:42.448 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:42.448 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:42:42.448 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137906420643135. ----------
17-03-17 18:42:42.448 -07 000000610 INF: Cycle	16	Tile	9	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:42.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28663, sync = True, waitForSettling = True)
17-03-17 18:42:42.448 -07 000000610 INF: Z Motor: Moving to -0.131211 mm, started at -0.137906 mm, distance = 6.70 um
17-03-17 18:42:42.458 -07 000000610 INF: FPGA: Xmit ZDACW 28663\n [Z Motor]
17-03-17 18:42:42.458 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:42:42.468 -07 000000610 INF: FPGA: 'ZDACW 28663' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:42.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:42.468 -07 000000551 INF: FPGA: Recv ZDACR 28663
17-03-17 18:42:42.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:42.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.628 -07 000000626 INF: FPGA: Recv ZSGSRD 29714
17-03-17 18:42:42.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:42.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.638 -07 000000541 INF: FPGA: Recv ZSGSRD 29711
17-03-17 18:42:42.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.648 -07 000000476 INF: FPGA: Recv ZSGSRD 29716
17-03-17 18:42:42.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.658 -07 000000438 INF: FPGA: Recv ZSGSRD 29712
17-03-17 18:42:42.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.668 -07 000000438 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:42:42.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29717
17-03-17 18:42:42.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.688 -07 000000012 INF: FPGA: Recv ZSGSRD 29716
17-03-17 18:42:42.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.698 -07 000000438 INF: FPGA: Recv ZSGSRD 29714
17-03-17 18:42:42.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.708 -07 000000382 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:42:42.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:42.718 -07 000000478 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:42:42.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:42.728 -07 000000438 INF: FPGA: Recv ZPIEZORD 25299
17-03-17 18:42:42.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:42.738 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.7 V.
17-03-17 18:42:42.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29714 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29714 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29707 (-130.4 uncal um), Max = 29717 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:42:42.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29714, posNoise = 3, negNoise = 7
17-03-17 18:42:42.738 -07 000000610 INF: Z Motor: After move to -0.131211, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:42.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:42:42.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:42.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:42.738 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:42.738 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:42.738 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:42.738 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:42.738 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:42.738 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:42.738 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:42.738 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:42.738 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:42.738 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:42.748 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:42:42.748 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:42.748 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:42:42.748 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:42.748 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:42:42.758 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:42.758 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:42:42.758 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:42:42.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28840 150\n [Camera]
17-03-17 18:42:42.958 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:43.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:43.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:43.348 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:43.348 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:43.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:42:43.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:43.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:43.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:43.358 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:43.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:42:43.538 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28840 779
17-03-17 18:42:43.688 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:43.728 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:42:43.728 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:42:43.728 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:43.728 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:42:43.728 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:42:43.728 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:43.738 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:43.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:43.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:42:43.738 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:42:43.878 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:43.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:43.878 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:43.878 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:43.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:42:43.888 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:43.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:43.888 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:43.888 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:43.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:42:44.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:42:44.078 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:44.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28840 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-17 18:42:44.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:44.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.13121239159142. ------
17-03-17 18:42:44.078 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:44.078 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13800 mm
17-03-17 18:42:44.078 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:44.078 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:44.078 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:42:44.078 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30146, sync = True, waitForSettling = False)
17-03-17 18:42:44.078 -07 000000476 INF: Z Motor: Moving to -0.138000 mm, started at -0.131212 mm, distance = -6.79 um
17-03-17 18:42:44.078 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:42:44.088 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:44.088 -07 000000476 INF: FPGA: Xmit ZDACW 30146\n [Z Motor]
17-03-17 18:42:44.088 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:42:44.098 -07 000000476 INF: FPGA: 'ZDACW 30146' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:44.098 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:44.098 -07 000000478 INF: FPGA: Recv ZDACR 30146
17-03-17 18:42:44.108 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:44.108 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:44.108 -07 000000476 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 18:42:44.108 -07 000000512 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:42:44.118 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:44.118 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:42:44.118 -07 000000438 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:44.118 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:44.118 -07 000000438 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:42:44.128 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:44.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:42:44.268 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:42:44.268 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:44.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:42:44.268 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:42:44.268 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:44.268 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:44.268 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:42:44.268 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:42:44.278 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:42:44.318 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:44.318 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 18:42:44.508 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:42:44.508 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 18:42:44.538 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:44.538 -07 000000626 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:42:44.548 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:44.548 -07 000000438 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:44.548 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:42:44.548 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.160 mm/sec
17-03-17 18:42:45.498 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:45.498 -07 000000382 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:42:45.508 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:45.508 -07 000000438 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:45.528 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:45.528 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:42:45.528 -07 000000438 INF: Y Motor: Moved to 67.3730 after 1442 ms (table move)
17-03-17 18:42:45.528 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138000 mm (DAC = 30146)
17-03-17 18:42:45.528 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.528 -07 000000431 INF: FPGA: Recv ZSGSRD 30769
17-03-17 18:42:45.538 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:42:45.538 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.538 -07 000000476 INF: FPGA: Recv ZSGSRD 30769
17-03-17 18:42:45.548 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.548 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.548 -07 000000462 INF: FPGA: Recv ZSGSRD 30771
17-03-17 18:42:45.558 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.558 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.558 -07 000000512 INF: FPGA: Recv ZSGSRD 30774
17-03-17 18:42:45.568 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.568 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.568 -07 000000012 INF: FPGA: Recv ZSGSRD 30775
17-03-17 18:42:45.578 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.578 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.578 -07 000000626 INF: FPGA: Recv ZSGSRD 30766
17-03-17 18:42:45.588 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.588 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.588 -07 000000476 INF: FPGA: Recv ZSGSRD 30777
17-03-17 18:42:45.598 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.598 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.598 -07 000000431 INF: FPGA: Recv ZSGSRD 30769
17-03-17 18:42:45.608 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.608 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.608 -07 000000012 INF: FPGA: Recv ZSGSRD 30766
17-03-17 18:42:45.618 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.618 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:45.618 -07 000000480 INF: FPGA: Recv ZSGSRD 30774
17-03-17 18:42:45.628 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.628 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:45.628 -07 000000478 INF: FPGA: Recv ZPIEZORD 26692
17-03-17 18:42:45.638 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:45.638 -07 000000551 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -9.0 V.
17-03-17 18:42:45.638 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30771 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30770 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30766 (-137.2 uncal um), Max = 30777 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:42:45.638 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30771, posNoise = 6, negNoise = 5
17-03-17 18:42:45.638 -07 000000551 INF: Z Motor: After move to -0.138000, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:45.638 -07 000000551 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:42:45.638 -07 000000551 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:45.688 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 18:42:45.688 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:45.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:45.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:45.688 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:45.688 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:45.688 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:45.698 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:45.698 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:45.698 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:45.698 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:42:45.698 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:45.708 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:45.708 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:45.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:45.758 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:45.958 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:45.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:45.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:45.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 18:42:45.998 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:45.998 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:45.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 18:42:46.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 18:42:46.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:46.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:42:46.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:42:46.098 -07 000000480 INF: Autofocus start
17-03-17 18:42:46.098 -07 000000480 INF: MeasureProfile start
17-03-17 18:42:46.098 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:46.108 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:46.108 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 18:42:46.108 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:46.108 -07 000000480 INF: MeasureProfile done
17-03-17 18:42:46.108 -07 000000480 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:42:46.108 -07 000000480 INF: Autofocus finished
17-03-17 18:42:46.308 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:46.308 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:42:46.318 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.138002783825261. ----------
17-03-17 18:42:46.318 -07 000000610 INF: Cycle	16	Tile	10	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:46.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28623, sync = True, waitForSettling = True)
17-03-17 18:42:46.318 -07 000000610 INF: Z Motor: Moving to -0.131028 mm, started at -0.138003 mm, distance = 6.98 um
17-03-17 18:42:46.318 -07 000000610 INF: FPGA: Xmit ZDACW 28623\n [Z Motor]
17-03-17 18:42:46.318 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:42:46.328 -07 000000610 INF: FPGA: 'ZDACW 28623' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:46.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:46.328 -07 000000462 INF: FPGA: Recv ZDACR 28623
17-03-17 18:42:46.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:46.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.488 -07 000000476 INF: FPGA: Recv ZSGSRD 29686
17-03-17 18:42:46.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:46.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.498 -07 000000623 INF: FPGA: Recv ZSGSRD 29685
17-03-17 18:42:46.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29687
17-03-17 18:42:46.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.518 -07 000000476 INF: FPGA: Recv ZSGSRD 29686
17-03-17 18:42:46.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.528 -07 000000478 INF: FPGA: Recv ZSGSRD 29685
17-03-17 18:42:46.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29690
17-03-17 18:42:46.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.548 -07 000000626 INF: FPGA: Recv ZSGSRD 29683
17-03-17 18:42:46.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.558 -07 000000512 INF: FPGA: Recv ZSGSRD 29686
17-03-17 18:42:46.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.568 -07 000000478 INF: FPGA: Recv ZSGSRD 29684
17-03-17 18:42:46.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:46.578 -07 000000438 INF: FPGA: Recv ZSGSRD 29688
17-03-17 18:42:46.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:46.588 -07 000000626 INF: FPGA: Recv ZPIEZORD 25283
17-03-17 18:42:46.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:46.598 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.7 V.
17-03-17 18:42:46.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29686 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29686 (-130.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29683 (-130.2 uncal um), Max = 29690 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:42:46.598 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29686, posNoise = 4, negNoise = 3
17-03-17 18:42:46.598 -07 000000610 INF: Z Motor: After move to -0.131028, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:46.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:42:46.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:46.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:46.598 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:46.598 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:46.598 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:46.598 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:46.598 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:46.598 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:46.598 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:42:46.598 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:46.598 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:46.598 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:46.608 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:42:46.608 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:46.608 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:46.608 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:46.618 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:42:46.618 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:42:46.618 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:42:46.618 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:46.618 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:46.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:46.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28800 150\n [Camera]
17-03-17 18:42:46.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:47.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:47.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:47.218 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:47.218 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:47.218 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:42:47.218 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:47.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:47.218 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:47.218 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:47.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:42:47.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28800 781
17-03-17 18:42:47.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:47.568 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.966297,
17-03-17 18:42:47.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:42:47.598 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:42:47.598 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:47.598 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:42:47.598 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:42:47.598 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:47.598 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:47.598 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:42:47.598 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:47.608 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:42:47.748 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:47.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:47.748 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:47.748 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:47.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:42:47.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:47.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:47.748 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:47.748 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:47.748 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:42:47.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:47.938 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:47.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28800 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-17 18:42:47.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:47.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131032513651451. ------
17-03-17 18:42:47.948 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13695 mm
17-03-17 18:42:47.948 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:47.948 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:47.948 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:47.948 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:42:47.948 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29917, sync = True, waitForSettling = False)
17-03-17 18:42:47.948 -07 000000626 INF: Z Motor: Moving to -0.136951 mm, started at -0.131033 mm, distance = -5.92 um
17-03-17 18:42:47.948 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 18:42:47.958 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:47.958 -07 000000626 INF: FPGA: Xmit ZDACW 29917\n [Z Motor]
17-03-17 18:42:47.958 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:42:47.968 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:47.968 -07 000000626 INF: FPGA: 'ZDACW 29917' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:42:47.968 -07 000000561 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:42:47.978 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:47.978 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:42:47.978 -07 000000512 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:47.978 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:47.978 -07 000000512 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:42:47.988 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:47.988 -07 000000561 INF: FPGA: Recv ZDACR 29917
17-03-17 18:42:47.998 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:47.998 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:47.998 -07 000000626 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:42:48.128 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:42:48.128 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:42:48.128 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:48.128 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:42:48.128 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:42:48.128 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:48.138 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:48.138 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:42:48.138 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:42:48.138 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:42:48.178 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:48.178 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:42:48.368 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:42:48.368 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:42:48.408 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:48.418 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:42:48.418 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:42:48.418 -07 000000512 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:48.418 -07 000000512 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:42:48.418 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 18:42:49.368 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:49.368 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:42:49.378 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.378 -07 000000512 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:49.388 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:49.398 -07 000000512 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:49.398 -07 000000512 INF: Y Motor: Moved to 68.2056 after 1445 ms (table move)
17-03-17 18:42:49.398 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136951 mm (DAC = 29917)
17-03-17 18:42:49.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.398 -07 000000438 INF: FPGA: Recv ZSGSRD 30619
17-03-17 18:42:49.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:49.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.408 -07 000000569 INF: FPGA: Recv ZSGSRD 30604
17-03-17 18:42:49.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.418 -07 000000551 INF: FPGA: Recv ZSGSRD 30612
17-03-17 18:42:49.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.428 -07 000000382 INF: FPGA: Recv ZSGSRD 30607
17-03-17 18:42:49.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.438 -07 000000561 INF: FPGA: Recv ZSGSRD 30612
17-03-17 18:42:49.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.448 -07 000000551 INF: FPGA: Recv ZSGSRD 30611
17-03-17 18:42:49.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.458 -07 000000438 INF: FPGA: Recv ZSGSRD 30605
17-03-17 18:42:49.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.468 -07 000000561 INF: FPGA: Recv ZSGSRD 30602
17-03-17 18:42:49.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.478 -07 000000569 INF: FPGA: Recv ZSGSRD 30607
17-03-17 18:42:49.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:49.488 -07 000000561 INF: FPGA: Recv ZSGSRD 30606
17-03-17 18:42:49.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.498 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:49.498 -07 000000476 INF: FPGA: Recv ZPIEZORD 26512
17-03-17 18:42:49.508 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:49.508 -07 000000012 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -9.0 V.
17-03-17 18:42:49.508 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30608 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30607 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30602 (-136.1 uncal um), Max = 30619 (-136.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:42:49.508 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30608, posNoise = 11, negNoise = 6
17-03-17 18:42:49.508 -07 000000012 INF: Z Motor: After move to -0.136951, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:49.508 -07 000000012 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:42:49.508 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:49.558 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 18:42:49.558 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:49.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:49.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:49.558 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:49.558 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:49.558 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:49.558 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:49.568 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:49.568 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:49.568 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:49.568 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:49.578 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:49.578 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:49.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:49.618 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:49.818 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:49.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:49.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:49.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2609049928, 0x0, 559484976) start.
17-03-17 18:42:49.858 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:49.858 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:49.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:42:49.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2609049928, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 18:42:49.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:49.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:49.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:42:49.958 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:49.958 -07 000000382 INF: Autofocus start
17-03-17 18:42:49.958 -07 000000382 INF: MeasureProfile start
17-03-17 18:42:49.968 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:49.968 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:42:49.968 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:49.978 -07 000000382 INF: MeasureProfile done
17-03-17 18:42:49.978 -07 000000382 INF: X=48  Z correction [um]=0.2069503
17-03-17 18:42:49.978 -07 000000382 INF: Autofocus finished
17-03-17 18:42:50.168 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:50.168 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:50.168 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136955637246154. ----------
17-03-17 18:42:50.168 -07 000000610 INF: Cycle	16	Tile	11	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:50.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28475, sync = True, waitForSettling = True)
17-03-17 18:42:50.178 -07 000000610 INF: Z Motor: Moving to -0.130350 mm, started at -0.136956 mm, distance = 6.61 um
17-03-17 18:42:50.178 -07 000000610 INF: FPGA: Xmit ZDACW 28475\n [Z Motor]
17-03-17 18:42:50.178 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:42:50.188 -07 000000610 INF: FPGA: 'ZDACW 28475' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:42:50.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:50.188 -07 000000569 INF: FPGA: Recv ZDACR 28475
17-03-17 18:42:50.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:50.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.348 -07 000000569 INF: FPGA: Recv ZSGSRD 29580
17-03-17 18:42:50.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:50.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.358 -07 000000382 INF: FPGA: Recv ZSGSRD 29579
17-03-17 18:42:50.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29583
17-03-17 18:42:50.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.378 -07 000000382 INF: FPGA: Recv ZSGSRD 29579
17-03-17 18:42:50.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.388 -07 000000382 INF: FPGA: Recv ZSGSRD 29580
17-03-17 18:42:50.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.398 -07 000000012 INF: FPGA: Recv ZSGSRD 29580
17-03-17 18:42:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.408 -07 000000012 INF: FPGA: Recv ZSGSRD 29582
17-03-17 18:42:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.418 -07 000000012 INF: FPGA: Recv ZSGSRD 29583
17-03-17 18:42:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.428 -07 000000569 INF: FPGA: Recv ZSGSRD 29579
17-03-17 18:42:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:50.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29578
17-03-17 18:42:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:50.448 -07 000000569 INF: FPGA: Recv ZPIEZORD 25146
17-03-17 18:42:50.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:50.458 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.7 V.
17-03-17 18:42:50.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29580 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29580 (-129.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29578 (-129.6 uncal um), Max = 29583 (-129.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:42:50.458 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29580, posNoise = 3, negNoise = 2
17-03-17 18:42:50.458 -07 000000610 INF: Z Motor: After move to -0.130350, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:50.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:42:50.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:50.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:50.458 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:50.458 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:50.458 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:50.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:50.458 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:50.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:50.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:50.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:50.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:50.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:50.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:50.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:50.468 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:42:50.468 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:50.468 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:42:50.468 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:42:50.478 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:42:50.478 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:50.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28652 150\n [Camera]
17-03-17 18:42:50.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:51.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:51.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:51.078 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:51.078 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:51.078 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:42:51.078 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:51.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:51.078 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:51.078 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:51.078 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:42:51.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28652 779
17-03-17 18:42:51.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:51.458 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:42:51.458 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:42:51.458 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:51.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:42:51.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:42:51.458 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:51.458 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:51.458 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:42:51.458 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:51.468 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:42:51.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:42:51.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:42:51.608 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:51.608 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:51.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:42:51.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:42:51.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:42:51.608 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:51.608 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:51.608 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:42:51.618 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:51.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:51.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:42:51.798 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:51.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28652 150' command took 2 ms to send, 1315 ms to get response, and 1317 ms overall
17-03-17 18:42:51.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:51.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130351547164424. ------
17-03-17 18:42:51.808 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13698 mm
17-03-17 18:42:51.808 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:51.808 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:51.808 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:42:51.808 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:42:51.808 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:51.808 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29923, sync = True, waitForSettling = False)
17-03-17 18:42:51.808 -07 000000382 INF: Z Motor: Moving to -0.136979 mm, started at -0.130352 mm, distance = -6.63 um
17-03-17 18:42:51.818 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:42:51.818 -07 000000382 INF: FPGA: Xmit ZDACW 29923\n [Z Motor]
17-03-17 18:42:51.818 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:42:51.828 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:51.828 -07 000000382 INF: FPGA: 'ZDACW 29923' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:42:51.828 -07 000000551 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:42:51.838 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:51.838 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:42:51.838 -07 000000438 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:51.838 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:51.838 -07 000000438 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:42:51.848 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:51.848 -07 000000569 INF: FPGA: Recv ZDACR 29923
17-03-17 18:42:51.858 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:51.858 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:42:51.858 -07 000000382 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:42:51.988 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:42:51.988 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:42:51.988 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:51.988 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:42:51.988 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:42:51.988 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:51.998 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:51.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:42:51.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:42:51.998 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:42:52.038 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:52.038 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:42:52.228 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:42:52.228 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:42:52.268 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:52.268 -07 000000561 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:42:52.278 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:42:52.278 -07 000000438 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:52.278 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:42:52.278 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-17 18:42:52.928 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.997626,
17-03-17 18:42:53.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:53.228 -07 000000561 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:42:53.238 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:53.238 -07 000000438 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:53.258 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:53.258 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:53.258 -07 000000438 INF: Y Motor: Moved to 69.0278 after 1446 ms (table move)
17-03-17 18:42:53.258 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136979 mm (DAC = 29923)
17-03-17 18:42:53.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.278 -07 000000561 INF: FPGA: Recv ZSGSRD 30619
17-03-17 18:42:53.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:42:53.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.298 -07 000000551 INF: FPGA: Recv ZSGSRD 30614
17-03-17 18:42:53.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:42:53.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.308 -07 000000551 INF: FPGA: Recv ZSGSRD 30610
17-03-17 18:42:53.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30622
17-03-17 18:42:53.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.328 -07 000000438 INF: FPGA: Recv ZSGSRD 30614
17-03-17 18:42:53.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.338 -07 000000561 INF: FPGA: Recv ZSGSRD 30606
17-03-17 18:42:53.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.348 -07 000000551 INF: FPGA: Recv ZSGSRD 30609
17-03-17 18:42:53.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.358 -07 000000561 INF: FPGA: Recv ZSGSRD 30612
17-03-17 18:42:53.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.368 -07 000000551 INF: FPGA: Recv ZSGSRD 30616
17-03-17 18:42:53.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:53.378 -07 000000561 INF: FPGA: Recv ZSGSRD 30610
17-03-17 18:42:53.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.388 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:53.388 -07 000000438 INF: FPGA: Recv ZPIEZORD 26507
17-03-17 18:42:53.398 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:53.398 -07 000000012 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -9.0 V.
17-03-17 18:42:53.398 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30613 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30613 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30606 (-136.1 uncal um), Max = 30622 (-136.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:42:53.398 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30613, posNoise = 9, negNoise = 7
17-03-17 18:42:53.398 -07 000000012 INF: Z Motor: After move to -0.136979, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:53.398 -07 000000012 INF: Z Motor: Settle wait time = 1448 ms, measure time = 135 ms (allowed 150 ms), total time = 1583 ms
17-03-17 18:42:53.398 -07 000000012 INF: Z Motor: Waiting extra 15 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:53.418 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:42:53.418 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:53.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:53.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:53.418 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:53.418 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:53.418 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:53.418 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:53.418 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:42:53.418 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:53.428 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:42:53.428 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:53.428 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:42:53.428 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:42:53.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:53.478 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:53.678 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:53.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:53.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:53.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1183484744, 0x0, 559484976) start.
17-03-17 18:42:53.718 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:53.718 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:53.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:42:53.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1183484744, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:42:53.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:53.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:42:53.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:42:53.818 -07 000000431 INF: Autofocus start
17-03-17 18:42:53.818 -07 000000431 INF: MeasureProfile start
17-03-17 18:42:53.818 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:53.818 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:53.828 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:53.828 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:53.828 -07 000000431 INF: MeasureProfile done
17-03-17 18:42:53.828 -07 000000431 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:42:53.828 -07 000000431 INF: Autofocus finished
17-03-17 18:42:54.028 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:54.028 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:54.028 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136987758306863. ----------
17-03-17 18:42:54.038 -07 000000610 INF: Cycle	16	Tile	12	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:54.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28418, sync = True, waitForSettling = True)
17-03-17 18:42:54.038 -07 000000610 INF: Z Motor: Moving to -0.130089 mm, started at -0.136988 mm, distance = 6.90 um
17-03-17 18:42:54.038 -07 000000610 INF: FPGA: Xmit ZDACW 28418\n [Z Motor]
17-03-17 18:42:54.038 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:42:54.048 -07 000000610 INF: FPGA: 'ZDACW 28418' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:54.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:54.048 -07 000000462 INF: FPGA: Recv ZDACR 28418
17-03-17 18:42:54.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29543
17-03-17 18:42:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.218 -07 000000623 INF: FPGA: Recv ZSGSRD 29543
17-03-17 18:42:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29540
17-03-17 18:42:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.238 -07 000000501 INF: FPGA: Recv ZSGSRD 29539
17-03-17 18:42:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.248 -07 000000012 INF: FPGA: Recv ZSGSRD 29543
17-03-17 18:42:54.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.258 -07 000000561 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:42:54.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29540
17-03-17 18:42:54.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.278 -07 000000561 INF: FPGA: Recv ZSGSRD 29542
17-03-17 18:42:54.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.288 -07 000000541 INF: FPGA: Recv ZSGSRD 29540
17-03-17 18:42:54.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:54.298 -07 000000541 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:42:54.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:54.308 -07 000000561 INF: FPGA: Recv ZPIEZORD 25132
17-03-17 18:42:54.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:54.318 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.7 V.
17-03-17 18:42:54.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29542 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29542 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29539 (-129.3 uncal um), Max = 29546 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:42:54.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29542, posNoise = 4, negNoise = 3
17-03-17 18:42:54.318 -07 000000610 INF: Z Motor: After move to -0.130089, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:54.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:42:54.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:54.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:54.318 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:54.318 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:54.318 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:54.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:54.318 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:54.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:54.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:54.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:54.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:54.318 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:54.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:42:54.328 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:54.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:42:54.328 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:54.338 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:42:54.338 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:42:54.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:42:54.338 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:54.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28595 150\n [Camera]
17-03-17 18:42:54.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:54.928 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:54.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:54.928 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:54.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:54.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:42:54.938 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:54.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:54.938 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:54.938 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:54.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:42:55.128 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28595 779
17-03-17 18:42:55.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:55.308 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:42:55.308 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:42:55.308 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:55.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:42:55.308 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:42:55.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:55.318 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:55.318 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:42:55.318 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:42:55.318 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:42:55.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:42:55.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:42:55.468 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:55.598 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:42:55.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:42:55.598 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:55.608 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:55.608 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:42:55.608 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:55.608 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:42:55.658 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:42:55.658 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:55.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28595 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:42:55.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:55.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130107427103037. ------
17-03-17 18:42:55.658 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13644 mm
17-03-17 18:42:55.658 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:55.658 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:55.668 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:55.668 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:42:55.668 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:42:55.668 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29806, sync = True, waitForSettling = False)
17-03-17 18:42:55.668 -07 000000480 INF: Z Motor: Moving to -0.136443 mm, started at -0.130107 mm, distance = -6.34 um
17-03-17 18:42:55.668 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:42:55.668 -07 000000541 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:42:55.678 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:55.678 -07 000000431 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:42:55.688 -07 000000480 INF: FPGA: Xmit ZDACW 29806\n [Z Motor]
17-03-17 18:42:55.688 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:42:55.688 -07 000000541 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:55.688 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:42:55.688 -07 000000541 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:42:55.688 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:42:55.698 -07 000000480 INF: FPGA: 'ZDACW 29806' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:42:55.698 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:55.698 -07 000000012 INF: FPGA: Recv ZDACR 29806
17-03-17 18:42:55.708 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:42:55.708 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:55.708 -07 000000480 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:42:55.868 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:42:55.868 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:42:55.978 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:42:55.978 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:42:55.978 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:55.988 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:55.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:42:55.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:42:55.988 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:55.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:55.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 18:42:55.988 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:42:56.078 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:42:56.078 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 393 ms overall
17-03-17 18:42:56.118 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:56.118 -07 000000569 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:42:56.128 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:56.128 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:56.128 -07 000000541 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:42:56.128 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-17 18:42:56.618 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:42:56.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:42:57.078 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:42:57.078 -07 000000569 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:42:57.088 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:57.088 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:42:57.108 -07 000000541 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:42:57.108 -07 000000541 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:42:57.108 -07 000000541 INF: Y Motor: Moved to 69.8638 after 1438 ms (table move)
17-03-17 18:42:57.108 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136443 mm (DAC = 29806)
17-03-17 18:42:57.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30531
17-03-17 18:42:57.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 18:42:57.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30535
17-03-17 18:42:57.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:42:57.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30534
17-03-17 18:42:57.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30528
17-03-17 18:42:57.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.148 -07 000000541 INF: FPGA: Recv ZSGSRD 30532
17-03-17 18:42:57.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.158 -07 000000541 INF: FPGA: Recv ZSGSRD 30532
17-03-17 18:42:57.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.168 -07 000000541 INF: FPGA: Recv ZSGSRD 30520
17-03-17 18:42:57.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.178 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.178 -07 000000569 INF: FPGA: Recv ZSGSRD 30525
17-03-17 18:42:57.188 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.188 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.188 -07 000000569 INF: FPGA: Recv ZSGSRD 30526
17-03-17 18:42:57.198 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.198 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:57.198 -07 000000541 INF: FPGA: Recv ZSGSRD 30534
17-03-17 18:42:57.208 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.208 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:57.208 -07 000000541 INF: FPGA: Recv ZPIEZORD 26429
17-03-17 18:42:57.218 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.218 -07 000000438 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -9.0 V.
17-03-17 18:42:57.218 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30530 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30532 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30520 (-135.6 uncal um), Max = 30535 (-135.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:42:57.218 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30530, posNoise = 5, negNoise = 10
17-03-17 18:42:57.218 -07 000000438 INF: Z Motor: After move to -0.136443, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:57.218 -07 000000438 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:42:57.218 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:42:57.268 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:42:57.268 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:42:57.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:57.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:57.268 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:57.268 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:57.278 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:42:57.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:57.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:42:57.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:42:57.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:57.278 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:42:57.288 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:42:57.288 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:42:57.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:42:57.328 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:42:57.528 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:42:57.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:42:57.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:42:57.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 18:42:57.568 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:42:57.568 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 18:42:57.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:42:57.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:42:57.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:57.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:42:57.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:42:57.668 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:42:57.668 -07 000000569 INF: Autofocus start
17-03-17 18:42:57.668 -07 000000569 INF: MeasureProfile start
17-03-17 18:42:57.668 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:42:57.678 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:42:57.678 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:42:57.688 -07 000000569 INF: MeasureProfile done
17-03-17 18:42:57.688 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:42:57.688 -07 000000569 INF: Autofocus finished
17-03-17 18:42:57.878 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:42:57.878 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:42:57.878 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136454548699097. ----------
17-03-17 18:42:57.888 -07 000000610 INF: Cycle	16	Tile	13	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:42:57.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28330, sync = True, waitForSettling = True)
17-03-17 18:42:57.888 -07 000000610 INF: Z Motor: Moving to -0.129686 mm, started at -0.136455 mm, distance = 6.77 um
17-03-17 18:42:57.888 -07 000000610 INF: FPGA: Xmit ZDACW 28330\n [Z Motor]
17-03-17 18:42:57.888 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:42:57.898 -07 000000610 INF: FPGA: 'ZDACW 28330' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:42:57.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:42:57.898 -07 000000569 INF: FPGA: Recv ZDACR 28330
17-03-17 18:42:57.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:57.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:42:58.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.058 -07 000000438 INF: FPGA: Recv ZSGSRD 29481
17-03-17 18:42:58.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:42:58.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.068 -07 000000541 INF: FPGA: Recv ZSGSRD 29479
17-03-17 18:42:58.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29477
17-03-17 18:42:58.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.088 -07 000000438 INF: FPGA: Recv ZSGSRD 29476
17-03-17 18:42:58.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.098 -07 000000512 INF: FPGA: Recv ZSGSRD 29476
17-03-17 18:42:58.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.108 -07 000000569 INF: FPGA: Recv ZSGSRD 29473
17-03-17 18:42:58.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.118 -07 000000569 INF: FPGA: Recv ZSGSRD 29472
17-03-17 18:42:58.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29473
17-03-17 18:42:58.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.138 -07 000000438 INF: FPGA: Recv ZSGSRD 29480
17-03-17 18:42:58.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:42:58.148 -07 000000569 INF: FPGA: Recv ZSGSRD 29475
17-03-17 18:42:58.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:42:58.158 -07 000000512 INF: FPGA: Recv ZPIEZORD 25046
17-03-17 18:42:58.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:42:58.168 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.7 V.
17-03-17 18:42:58.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29476 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29472 (-128.9 uncal um), Max = 29481 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:42:58.168 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29476, posNoise = 5, negNoise = 4
17-03-17 18:42:58.168 -07 000000610 INF: Z Motor: After move to -0.129686, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:42:58.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:42:58.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:42:58.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:42:58.178 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:42:58.178 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:42:58.178 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:42:58.178 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:42:58.178 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:42:58.178 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:42:58.178 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:42:58.178 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:42:58.178 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:42:58.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:42:58.178 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:42:58.178 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:42:58.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:42:58.178 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:42:58.188 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:42:58.188 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:42:58.188 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:42:58.188 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:42:58.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28507 150\n [Camera]
17-03-17 18:42:58.298 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.003063,
17-03-17 18:42:58.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:42:58.788 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:42:58.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:42:58.788 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:42:58.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:42:58.788 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:58.788 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:58.798 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:58.798 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:58.798 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) start.
17-03-17 18:42:58.798 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 18:42:58.978 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28507 779
17-03-17 18:42:59.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:42:59.168 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1078890088, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 18:42:59.168 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:42:59.168 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:59.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:42:59.178 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:42:59.178 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:42:59.178 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:59.178 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:59.178 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:42:59.178 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:42:59.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1119
17-03-17 18:42:59.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1119
17-03-17 18:42:59.318 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:42:59.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1119
17-03-17 18:42:59.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1119
17-03-17 18:42:59.438 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:42:59.448 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:42:59.448 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) start.
17-03-17 18:42:59.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:42:59.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:42:59.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2564817056, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:42:59.818 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:42:59.818 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:59.828 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:59.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:42:59.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:42:59.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:42:59.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:42:59.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 18:42:59.828 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:42:59.838 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:42:59.838 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:42:59.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28507 150' command took 2 ms to send, 1635 ms to get response, and 1645 ms overall
17-03-17 18:42:59.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:42:59.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129683429101681. ------
17-03-17 18:42:59.848 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13614 mm
17-03-17 18:42:59.848 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:42:59.848 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:00.748 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:43:00.748 -07 000000462 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:43:00.748 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:01.748 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:01.748 -07 000000623 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:43:01.748 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:01.748 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 991 ms to get response, and 997 ms overall
17-03-17 18:43:01.748 -07 000000462 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:01.748 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1891 ms to get response, and 1899 ms overall
17-03-17 18:43:01.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:43:01.748 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:43:01.748 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29740, sync = True, waitForSettling = False)
17-03-17 18:43:01.748 -07 000000623 INF: Z Motor: Moving to -0.136141 mm, started at -0.129683 mm, distance = -6.46 um
17-03-17 18:43:01.748 -07 000000462 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:43:01.748 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:43:01.758 -07 000000623 INF: FPGA: Xmit ZDACW 29740\n [Z Motor]
17-03-17 18:43:01.768 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:43:02.748 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:43:02.748 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:43:02.748 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:43:02.748 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 970 ms to get response, and 995 ms overall
17-03-17 18:43:02.748 -07 000000623 INF: FPGA: 'ZDACW 29740' command took 0 ms to send, 980 ms to get response, and 996 ms overall
17-03-17 18:43:02.748 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:02.748 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 997 ms overall
17-03-17 18:43:02.748 -07 000000478 INF: FPGA: Recv ZDACR 29740
17-03-17 18:43:02.758 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:02.758 -07 000000623 INF: Z Motor: MoveAbsStepped took 1006 ms (did NOT wait for settling yet))
17-03-17 18:43:02.788 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:02.788 -07 000000478 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:43:02.798 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:02.798 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:02.798 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:43:02.798 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 995 ms, distance = 0.839 mm, average velocity = 0.843 mm/sec
17-03-17 18:43:03.668 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.964938,
17-03-17 18:43:03.748 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:03.748 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:43:03.758 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:03.758 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:03.778 -07 000000462 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:43:03.778 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:43:03.778 -07 000000462 INF: Y Motor: Moved to 70.6890 after 3033 ms (table move)
17-03-17 18:43:03.788 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136141 mm (DAC = 29740)
17-03-17 18:43:03.788 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30485
17-03-17 18:43:03.798 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:03.798 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.798 -07 000000623 INF: FPGA: Recv ZSGSRD 30480
17-03-17 18:43:03.808 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30475
17-03-17 18:43:03.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.818 -07 000000462 INF: FPGA: Recv ZSGSRD 30478
17-03-17 18:43:03.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.828 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.828 -07 000000478 INF: FPGA: Recv ZSGSRD 30481
17-03-17 18:43:03.838 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.838 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.838 -07 000000478 INF: FPGA: Recv ZSGSRD 30482
17-03-17 18:43:03.848 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.848 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.848 -07 000000501 INF: FPGA: Recv ZSGSRD 30481
17-03-17 18:43:03.858 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30482
17-03-17 18:43:03.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.868 -07 000000623 INF: FPGA: Recv ZSGSRD 30485
17-03-17 18:43:03.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:03.878 -07 000000501 INF: FPGA: Recv ZSGSRD 30484
17-03-17 18:43:03.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.888 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:03.888 -07 000000478 INF: FPGA: Recv ZPIEZORD 26395
17-03-17 18:43:03.898 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:03.898 -07 000000541 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.538 V. Piezo Error = -9.0 V.
17-03-17 18:43:03.898 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30481 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30482 (-135.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30475 (-135.3 uncal um), Max = 30485 (-135.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:43:03.898 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30481, posNoise = 4, negNoise = 6
17-03-17 18:43:03.898 -07 000000541 INF: Z Motor: After move to -0.136141, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:03.898 -07 000000541 INF: Z Motor: Settle wait time = 2037 ms, measure time = 109 ms (allowed 150 ms), total time = 2146 ms
17-03-17 18:43:03.898 -07 000000541 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:43:03.948 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4097 ms
17-03-17 18:43:03.948 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:43:03.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:03.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:03.948 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:03.948 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:43:03.948 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:03.948 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:03.948 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:43:03.948 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:43:03.958 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:43:03.958 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:43:03.968 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:43:03.968 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:43:03.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:43:04.018 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:43:04.218 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:43:04.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:43:04.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:43:04.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:43:04.258 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:43:04.258 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 18:43:04.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:43:04.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:43:04.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:04.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:43:04.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:43:04.358 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:04.358 -07 000000551 INF: Autofocus start
17-03-17 18:43:04.358 -07 000000551 INF: MeasureProfile start
17-03-17 18:43:04.358 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:04.368 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:43:04.368 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:43:04.378 -07 000000551 INF: MeasureProfile done
17-03-17 18:43:04.378 -07 000000551 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:43:04.378 -07 000000551 INF: Autofocus finished
17-03-17 18:43:04.568 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:43:04.568 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:43:04.568 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136139762304151. ----------
17-03-17 18:43:04.578 -07 000000610 INF: Cycle	16	Tile	14	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:43:04.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28235, sync = True, waitForSettling = True)
17-03-17 18:43:04.578 -07 000000610 INF: Z Motor: Moving to -0.129252 mm, started at -0.136140 mm, distance = 6.89 um
17-03-17 18:43:04.578 -07 000000610 INF: FPGA: Xmit ZDACW 28235\n [Z Motor]
17-03-17 18:43:04.578 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:43:04.588 -07 000000610 INF: FPGA: 'ZDACW 28235' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:43:04.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:04.588 -07 000000623 INF: FPGA: Recv ZDACR 28235
17-03-17 18:43:04.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:43:04.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.748 -07 000000462 INF: FPGA: Recv ZSGSRD 29414
17-03-17 18:43:04.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:04.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.758 -07 000000561 INF: FPGA: Recv ZSGSRD 29415
17-03-17 18:43:04.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.768 -07 000000551 INF: FPGA: Recv ZSGSRD 29408
17-03-17 18:43:04.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.778 -07 000000478 INF: FPGA: Recv ZSGSRD 29405
17-03-17 18:43:04.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.788 -07 000000561 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:43:04.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29415
17-03-17 18:43:04.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.808 -07 000000501 INF: FPGA: Recv ZSGSRD 29405
17-03-17 18:43:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.818 -07 000000478 INF: FPGA: Recv ZSGSRD 29411
17-03-17 18:43:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.828 -07 000000462 INF: FPGA: Recv ZSGSRD 29412
17-03-17 18:43:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:04.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29410
17-03-17 18:43:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:04.848 -07 000000478 INF: FPGA: Recv ZPIEZORD 25019
17-03-17 18:43:04.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:04.858 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.6 V.
17-03-17 18:43:04.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29411 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29412 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29405 (-128.5 uncal um), Max = 29418 (-128.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:43:04.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29411, posNoise = 7, negNoise = 6
17-03-17 18:43:04.858 -07 000000610 INF: Z Motor: After move to -0.129252, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:04.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:43:04.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:04.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:04.858 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:04.858 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:04.858 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:43:04.858 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:04.858 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:43:04.858 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:43:04.858 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:43:04.858 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:43:04.858 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:43:04.858 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:43:04.868 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:43:04.868 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:43:04.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:43:04.868 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:43:04.878 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:43:04.878 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:43:04.878 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:43:04.878 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:43:04.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28411 150\n [Camera]
17-03-17 18:43:05.078 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:43:05.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:43:05.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:43:05.478 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:05.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:43:05.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:43:05.488 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:05.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:43:05.488 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:05.488 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:05.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:43:05.668 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28411 779
17-03-17 18:43:05.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:43:05.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:43:05.858 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:43:05.858 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:05.858 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:43:05.858 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:43:05.858 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:05.868 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:43:05.868 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:43:05.868 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:43:05.878 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:43:06.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:43:06.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:43:06.018 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:06.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:43:06.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:43:06.118 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:06.128 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:06.128 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:43:06.128 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:06.128 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:43:06.198 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:43:06.198 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:43:06.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28411 150' command took 2 ms to send, 1308 ms to get response, and 1317 ms overall
17-03-17 18:43:06.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:43:06.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129265855312467. ------
17-03-17 18:43:06.208 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:06.208 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13589 mm
17-03-17 18:43:06.208 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:43:06.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:43:06.508 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:43:06.508 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:06.508 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:06.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:43:06.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:43:06.508 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:06.518 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:43:06.518 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 18:43:06.518 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:43:06.528 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:06.528 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 316 ms to get response, and 321 ms overall
17-03-17 18:43:06.528 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:43:06.528 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:43:06.528 -07 000000623 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:43:06.538 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:06.538 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29686, sync = True, waitForSettling = False)
17-03-17 18:43:06.538 -07 000000012 INF: Z Motor: Moving to -0.135894 mm, started at -0.129266 mm, distance = -6.63 um
17-03-17 18:43:06.548 -07 000000012 INF: FPGA: Xmit ZDACW 29686\n [Z Motor]
17-03-17 18:43:07.248 -07 000000626 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:43:07.248 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:43:07.248 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:07.248 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:43:07.248 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 711 ms to get response, and 714 ms overall
17-03-17 18:43:07.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:43:07.248 -07 000000012 INF: FPGA: 'ZDACW 29686' command took 0 ms to send, 690 ms to get response, and 709 ms overall
17-03-17 18:43:07.248 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 700 ms to get response, and 710 ms overall
17-03-17 18:43:07.248 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:07.248 -07 000000623 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:07.248 -07 000000501 INF: FPGA: Recv ZDACR 29686
17-03-17 18:43:07.248 -07 000000623 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:43:07.248 -07 000000623 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:43:07.258 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:43:07.258 -07 000000012 INF: Z Motor: MoveAbsStepped took 718 ms (did NOT wait for settling yet))
17-03-17 18:43:07.258 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:43:07.628 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:43:07.628 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 18:43:07.668 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:07.668 -07 000000626 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:43:07.678 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:43:07.678 -07 000000623 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:07.678 -07 000000623 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:43:07.678 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.844 mm, average velocity = 2.226 mm/sec
17-03-17 18:43:08.628 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:08.628 -07 000000012 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:43:08.638 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:08.638 -07 000000623 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:08.658 -07 000000623 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:43:08.658 -07 000000623 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:43:08.658 -07 000000623 INF: Y Motor: Moved to 71.5200 after 2121 ms (table move)
17-03-17 18:43:08.658 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135894 mm (DAC = 29686)
17-03-17 18:43:08.658 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.658 -07 000000512 INF: FPGA: Recv ZSGSRD 30442
17-03-17 18:43:08.668 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:43:08.668 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.668 -07 000000626 INF: FPGA: Recv ZSGSRD 30438
17-03-17 18:43:08.678 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.678 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.678 -07 000000512 INF: FPGA: Recv ZSGSRD 30440
17-03-17 18:43:08.688 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.688 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.688 -07 000000512 INF: FPGA: Recv ZSGSRD 30446
17-03-17 18:43:08.698 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.698 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.698 -07 000000512 INF: FPGA: Recv ZSGSRD 30444
17-03-17 18:43:08.708 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.708 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.708 -07 000000501 INF: FPGA: Recv ZSGSRD 30449
17-03-17 18:43:08.718 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.728 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.728 -07 000000512 INF: FPGA: Recv ZSGSRD 30448
17-03-17 18:43:08.738 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:43:08.738 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30446
17-03-17 18:43:08.748 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.748 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.748 -07 000000501 INF: FPGA: Recv ZSGSRD 30439
17-03-17 18:43:08.758 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.758 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:08.758 -07 000000623 INF: FPGA: Recv ZSGSRD 30441
17-03-17 18:43:08.768 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.768 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:08.768 -07 000000626 INF: FPGA: Recv ZPIEZORD 26418
17-03-17 18:43:08.778 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:08.778 -07 000000480 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -8.9 V.
17-03-17 18:43:08.778 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30443 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30443 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30438 (-135.1 uncal um), Max = 30449 (-135.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:43:08.778 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30443, posNoise = 6, negNoise = 5
17-03-17 18:43:08.778 -07 000000480 INF: Z Motor: After move to -0.135894, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:08.778 -07 000000480 INF: Z Motor: Settle wait time = 2123 ms, measure time = 116 ms (allowed 150 ms), total time = 2239 ms
17-03-17 18:43:08.778 -07 000000480 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 18:43:08.818 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2605 ms
17-03-17 18:43:08.818 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:43:08.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:08.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:08.818 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:08.818 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:08.818 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:43:08.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:08.828 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:43:08.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:43:08.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:43:08.828 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:43:08.838 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:43:08.838 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:43:08.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:43:08.878 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:43:09.038 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.939015,
17-03-17 18:43:09.078 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:43:09.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:43:09.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:43:09.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:43:09.118 -07 000000626 INF: FPGA: Recv @CAMSNAP 282
17-03-17 18:43:09.128 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:43:09.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 18:43:09.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:43:09.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:09.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:43:09.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:43:09.228 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:09.228 -07 000000501 INF: Autofocus start
17-03-17 18:43:09.228 -07 000000501 INF: MeasureProfile start
17-03-17 18:43:09.228 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:09.238 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:43:09.238 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:43:09.238 -07 000000501 INF: MeasureProfile done
17-03-17 18:43:09.238 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:43:09.238 -07 000000501 INF: Autofocus finished
17-03-17 18:43:09.438 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:43:09.438 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:43:09.438 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.135895642242764. ----------
17-03-17 18:43:09.438 -07 000000610 INF: Cycle	16	Tile	15	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:43:09.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28210, sync = True, waitForSettling = True)
17-03-17 18:43:09.448 -07 000000610 INF: Z Motor: Moving to -0.129137 mm, started at -0.135896 mm, distance = 6.76 um
17-03-17 18:43:09.448 -07 000000610 INF: FPGA: Xmit ZDACW 28210\n [Z Motor]
17-03-17 18:43:09.448 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:43:09.458 -07 000000610 INF: FPGA: 'ZDACW 28210' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:09.458 -07 000000476 INF: FPGA: Recv ZDACR 28210
17-03-17 18:43:09.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:43:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.618 -07 000000623 INF: FPGA: Recv ZSGSRD 29389
17-03-17 18:43:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29391
17-03-17 18:43:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.638 -07 000000623 INF: FPGA: Recv ZSGSRD 29390
17-03-17 18:43:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.648 -07 000000012 INF: FPGA: Recv ZSGSRD 29393
17-03-17 18:43:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29393
17-03-17 18:43:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.668 -07 000000480 INF: FPGA: Recv ZSGSRD 29387
17-03-17 18:43:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.678 -07 000000512 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:43:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.688 -07 000000626 INF: FPGA: Recv ZSGSRD 29391
17-03-17 18:43:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.698 -07 000000476 INF: FPGA: Recv ZSGSRD 29393
17-03-17 18:43:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:09.708 -07 000000501 INF: FPGA: Recv ZSGSRD 29391
17-03-17 18:43:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:09.718 -07 000000012 INF: FPGA: Recv ZPIEZORD 25002
17-03-17 18:43:09.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:09.728 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.305 V. Piezo Error = -9.6 V.
17-03-17 18:43:09.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29391 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29391 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29387 (-128.3 uncal um), Max = 29396 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:43:09.728 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29391, posNoise = 5, negNoise = 4
17-03-17 18:43:09.728 -07 000000610 INF: Z Motor: After move to -0.129137, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:09.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:43:09.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:09.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:09.728 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:09.728 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:43:09.728 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:43:09.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:43:09.728 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:09.728 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:09.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:43:09.728 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:43:09.728 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:43:09.728 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:43:09.738 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:43:09.738 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:43:09.738 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:43:09.738 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:43:09.748 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:43:09.748 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:43:09.748 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:43:09.748 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:43:09.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28387 150\n [Camera]
17-03-17 18:43:09.948 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:43:10.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:43:10.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:43:10.348 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:10.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:43:10.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:43:10.348 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:10.348 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:10.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:43:10.348 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:10.348 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:43:10.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28387 779
17-03-17 18:43:10.688 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:43:10.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:43:10.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:43:10.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:43:10.728 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:10.728 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:43:10.728 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:10.728 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:43:10.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:43:10.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:43:10.738 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:43:10.878 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:43:10.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:43:10.878 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:10.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:43:10.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:43:10.988 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:10.998 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:10.998 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:43:10.998 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:10.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:43:11.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:43:11.068 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:43:11.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28387 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-17 18:43:11.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:43:11.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129137371069631. ------
17-03-17 18:43:11.068 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:11.068 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13517 mm
17-03-17 18:43:11.068 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:43:11.078 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:11.078 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:43:11.078 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:43:11.078 -07 000000438 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:43:11.078 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:11.078 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29529, sync = True, waitForSettling = False)
17-03-17 18:43:11.078 -07 000000501 INF: Z Motor: Moving to -0.135175 mm, started at -0.129137 mm, distance = -6.04 um
17-03-17 18:43:11.078 -07 000000462 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:43:11.088 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:11.088 -07 000000438 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:11.088 -07 000000438 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:43:11.088 -07 000000438 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:43:11.088 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:43:11.098 -07 000000501 INF: FPGA: Xmit ZDACW 29529\n [Z Motor]
17-03-17 18:43:11.098 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:43:11.108 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:43:11.108 -07 000000501 INF: FPGA: 'ZDACW 29529' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:43:11.118 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:11.118 -07 000000480 INF: FPGA: Recv ZDACR 29529
17-03-17 18:43:11.128 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:43:11.128 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:43:11.288 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:43:11.288 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:43:11.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:43:11.368 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:43:11.368 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:11.378 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:43:11.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:43:11.378 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:43:11.378 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:11.378 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:11.378 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 18:43:11.378 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:43:11.478 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:43:11.478 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:43:11.518 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:11.528 -07 000000382 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:43:11.528 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:43:11.528 -07 000000438 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:11.528 -07 000000438 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:43:11.528 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 18:43:11.618 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:11.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:43:12.478 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:12.478 -07 000000501 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:43:12.488 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:12.488 -07 000000438 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:12.508 -07 000000438 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:43:12.508 -07 000000438 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:43:12.508 -07 000000438 INF: Y Motor: Moved to 72.3501 after 1430 ms (table move)
17-03-17 18:43:12.508 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135175 mm (DAC = 29529)
17-03-17 18:43:12.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.508 -07 000000476 INF: FPGA: Recv ZSGSRD 30325
17-03-17 18:43:12.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:43:12.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.518 -07 000000476 INF: FPGA: Recv ZSGSRD 30333
17-03-17 18:43:12.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:12.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.528 -07 000000431 INF: FPGA: Recv ZSGSRD 30329
17-03-17 18:43:12.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.538 -07 000000480 INF: FPGA: Recv ZSGSRD 30332
17-03-17 18:43:12.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.548 -07 000000476 INF: FPGA: Recv ZSGSRD 30339
17-03-17 18:43:12.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.558 -07 000000626 INF: FPGA: Recv ZSGSRD 30331
17-03-17 18:43:12.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.568 -07 000000476 INF: FPGA: Recv ZSGSRD 30341
17-03-17 18:43:12.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.578 -07 000000480 INF: FPGA: Recv ZSGSRD 30333
17-03-17 18:43:12.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.588 -07 000000541 INF: FPGA: Recv ZSGSRD 30331
17-03-17 18:43:12.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:12.598 -07 000000476 INF: FPGA: Recv ZSGSRD 30331
17-03-17 18:43:12.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.608 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:12.608 -07 000000541 INF: FPGA: Recv ZPIEZORD 26248
17-03-17 18:43:12.618 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:12.618 -07 000000512 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -9.0 V.
17-03-17 18:43:12.618 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30332 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30332 (-134.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30325 (-134.3 uncal um), Max = 30341 (-134.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:43:12.618 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30332, posNoise = 9, negNoise = 7
17-03-17 18:43:12.618 -07 000000512 INF: Z Motor: After move to -0.135175, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:12.618 -07 000000512 INF: Z Motor: Settle wait time = 1432 ms, measure time = 106 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:43:12.618 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:43:12.668 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:43:12.668 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:43:12.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:12.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:12.668 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:12.668 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:43:12.668 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:12.668 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:12.668 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:43:12.668 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:43:12.678 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:43:12.678 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:43:12.678 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:43:12.678 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:43:12.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:43:12.728 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:43:12.928 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:43:12.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:43:12.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:43:12.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:43:12.968 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:43:12.968 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:43:12.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:43:13.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:43:13.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:13.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:43:13.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:43:13.068 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:13.068 -07 000000541 INF: Autofocus start
17-03-17 18:43:13.068 -07 000000541 INF: MeasureProfile start
17-03-17 18:43:13.068 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:13.078 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:43:13.078 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:43:13.088 -07 000000541 INF: MeasureProfile done
17-03-17 18:43:13.088 -07 000000541 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:43:13.088 -07 000000541 INF: Autofocus finished
17-03-17 18:43:13.278 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:43:13.278 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:43:13.288 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135182554695028. ----------
17-03-17 18:43:13.288 -07 000000610 INF: Cycle	16	Tile	16	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:43:13.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28036, sync = True, waitForSettling = True)
17-03-17 18:43:13.298 -07 000000610 INF: Z Motor: Moving to -0.128341 mm, started at -0.135183 mm, distance = 6.84 um
17-03-17 18:43:13.298 -07 000000610 INF: FPGA: Xmit ZDACW 28036\n [Z Motor]
17-03-17 18:43:13.298 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:43:13.308 -07 000000610 INF: FPGA: 'ZDACW 28036' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:13.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:13.308 -07 000000480 INF: FPGA: Recv ZDACR 28036
17-03-17 18:43:13.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:43:13.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.468 -07 000000431 INF: FPGA: Recv ZSGSRD 29263
17-03-17 18:43:13.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:13.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.478 -07 000000541 INF: FPGA: Recv ZSGSRD 29269
17-03-17 18:43:13.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.488 -07 000000431 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:43:13.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.498 -07 000000626 INF: FPGA: Recv ZSGSRD 29266
17-03-17 18:43:13.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.508 -07 000000480 INF: FPGA: Recv ZSGSRD 29265
17-03-17 18:43:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.518 -07 000000431 INF: FPGA: Recv ZSGSRD 29270
17-03-17 18:43:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.528 -07 000000480 INF: FPGA: Recv ZSGSRD 29270
17-03-17 18:43:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.538 -07 000000541 INF: FPGA: Recv ZSGSRD 29268
17-03-17 18:43:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.548 -07 000000480 INF: FPGA: Recv ZSGSRD 29263
17-03-17 18:43:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:13.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29271
17-03-17 18:43:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:13.568 -07 000000480 INF: FPGA: Recv ZPIEZORD 24832
17-03-17 18:43:13.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:13.578 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.7 V.
17-03-17 18:43:13.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29268 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29268 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29263 (-127.5 uncal um), Max = 29274 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:43:13.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29268, posNoise = 6, negNoise = 5
17-03-17 18:43:13.578 -07 000000610 INF: Z Motor: After move to -0.128341, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:13.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:43:13.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:13.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:13.578 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:13.578 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:43:13.578 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:13.578 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:13.578 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:43:13.578 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:43:13.578 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:43:13.578 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:43:13.578 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:43:13.578 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:43:13.588 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:43:13.588 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:43:13.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:43:13.588 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:43:13.598 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:43:13.598 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:43:13.598 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:43:13.598 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:43:13.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28213 150\n [Camera]
17-03-17 18:43:13.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:43:14.188 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:43:14.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:43:14.188 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:14.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:43:14.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:43:14.198 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:14.198 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:14.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) start.
17-03-17 18:43:14.198 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:14.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) start.
17-03-17 18:43:14.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28213 779
17-03-17 18:43:14.418 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.963579,
17-03-17 18:43:14.528 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:43:14.568 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1078890088, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:43:14.568 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:43:14.568 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:14.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1114312352, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:43:14.678 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 479 ms.
17-03-17 18:43:14.678 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:14.678 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 18:43:14.678 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 491 ms.
17-03-17 18:43:14.688 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:14.688 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 18:43:14.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:43:14.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:43:14.728 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:14.728 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:43:14.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:43:14.728 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:14.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:14.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:43:14.738 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:14.738 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:43:14.908 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:43:14.918 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:43:14.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28213 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-17 18:43:14.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:43:14.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128347192976195. ------
17-03-17 18:43:14.918 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:14.918 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13493 mm
17-03-17 18:43:14.918 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:43:14.928 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:14.928 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:43:14.928 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:43:14.928 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29476, sync = True, waitForSettling = False)
17-03-17 18:43:14.928 -07 000000431 INF: Z Motor: Moving to -0.134932 mm, started at -0.128347 mm, distance = -6.59 um
17-03-17 18:43:14.928 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:43:14.928 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:43:14.938 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:14.938 -07 000000623 INF: FPGA: Recv YRDPOS 148174
17-03-17 18:43:14.948 -07 000000431 INF: FPGA: Xmit ZDACW 29476\n [Z Motor]
17-03-17 18:43:14.948 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:43:14.948 -07 000000480 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:14.948 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:43:14.948 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:43:14.948 -07 000000480 INF: Y Motor: Moving 1347 steps-26
17-03-17 18:43:14.958 -07 000000431 INF: FPGA: 'ZDACW 29476' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:43:14.958 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:43:14.968 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:14.968 -07 000000476 INF: FPGA: Recv ZDACR 29476
17-03-17 18:43:14.978 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:43:14.978 -07 000000431 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:43:15.108 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:43:15.108 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:43:15.108 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:15.118 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:15.118 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:43:15.118 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:43:15.118 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:43:15.118 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:15.128 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:43:15.128 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:43:15.128 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 18:43:15.138 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:43:15.328 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:43:15.328 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:43:15.368 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:15.368 -07 000000012 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:43:15.378 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:15.378 -07 000000480 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:15.378 -07 000000480 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:43:15.378 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.843 mm, average velocity = 2.200 mm/sec
17-03-17 18:43:16.328 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:16.328 -07 000000382 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:43:16.338 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:16.338 -07 000000480 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:16.358 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:43:16.358 -07 000000480 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:43:16.358 -07 000000480 INF: Y Motor: Moved to 73.1768 after 1425 ms (table move)
17-03-17 18:43:16.358 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134932 mm (DAC = 29476)
17-03-17 18:43:16.358 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.358 -07 000000551 INF: FPGA: Recv ZSGSRD 30295
17-03-17 18:43:16.368 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:43:16.368 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.368 -07 000000501 INF: FPGA: Recv ZSGSRD 30290
17-03-17 18:43:16.378 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.378 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.378 -07 000000478 INF: FPGA: Recv ZSGSRD 30293
17-03-17 18:43:16.388 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.388 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30297
17-03-17 18:43:16.398 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.398 -07 000000512 INF: FPGA: Recv ZSGSRD 30299
17-03-17 18:43:16.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.408 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.408 -07 000000501 INF: FPGA: Recv ZSGSRD 30291
17-03-17 18:43:16.418 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.418 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.418 -07 000000541 INF: FPGA: Recv ZSGSRD 30293
17-03-17 18:43:16.428 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.428 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.428 -07 000000431 INF: FPGA: Recv ZSGSRD 30296
17-03-17 18:43:16.438 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.438 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.438 -07 000000512 INF: FPGA: Recv ZSGSRD 30289
17-03-17 18:43:16.448 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.448 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:16.448 -07 000000501 INF: FPGA: Recv ZSGSRD 30289
17-03-17 18:43:16.458 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.458 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:16.458 -07 000000478 INF: FPGA: Recv ZPIEZORD 26180
17-03-17 18:43:16.468 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:16.468 -07 000000569 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.498 V. Piezo Error = -9.1 V.
17-03-17 18:43:16.468 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30293 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30293 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30289 (-134.1 uncal um), Max = 30299 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:43:16.468 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30293, posNoise = 6, negNoise = 4
17-03-17 18:43:16.468 -07 000000569 INF: Z Motor: After move to -0.134932, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:16.468 -07 000000569 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:43:16.468 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:43:16.518 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:43:16.518 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:43:16.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:16.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:16.518 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:16.518 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:16.518 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:43:16.518 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:16.518 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:43:16.518 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:43:16.518 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:43:16.518 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:43:16.528 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:43:16.528 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:43:16.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:43:16.578 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:43:16.618 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:43:16.778 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:43:16.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:43:16.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:43:16.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:43:16.828 -07 000000431 INF: FPGA: Recv @CAMSNAP 283
17-03-17 18:43:16.828 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:43:16.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 18:43:16.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:43:16.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:16.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:43:16.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:43:16.928 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:16.928 -07 000000431 INF: Autofocus start
17-03-17 18:43:16.928 -07 000000431 INF: MeasureProfile start
17-03-17 18:43:16.928 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:16.938 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:43:16.938 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:43:16.948 -07 000000431 INF: MeasureProfile done
17-03-17 18:43:16.948 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:43:16.948 -07 000000431 INF: Autofocus finished
17-03-17 18:43:17.138 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:43:17.138 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:43:17.138 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.1349320104215. ----------
17-03-17 18:43:17.138 -07 000000610 INF: Cycle	16	Tile	17	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:43:17.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27984, sync = True, waitForSettling = True)
17-03-17 18:43:17.148 -07 000000610 INF: Z Motor: Moving to -0.128103 mm, started at -0.134932 mm, distance = 6.83 um
17-03-17 18:43:17.148 -07 000000610 INF: FPGA: Xmit ZDACW 27984\n [Z Motor]
17-03-17 18:43:17.148 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:43:17.158 -07 000000610 INF: FPGA: 'ZDACW 27984' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:17.158 -07 000000561 INF: FPGA: Recv ZDACR 27984
17-03-17 18:43:17.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:43:17.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.318 -07 000000478 INF: FPGA: Recv ZSGSRD 29230
17-03-17 18:43:17.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:17.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.328 -07 000000431 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:43:17.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.338 -07 000000480 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:43:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.348 -07 000000431 INF: FPGA: Recv ZSGSRD 29234
17-03-17 18:43:17.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:17.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.358 -07 000000382 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:43:17.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29233
17-03-17 18:43:17.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.378 -07 000000431 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:43:17.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.388 -07 000000480 INF: FPGA: Recv ZSGSRD 29228
17-03-17 18:43:17.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29233
17-03-17 18:43:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:17.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29229
17-03-17 18:43:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:17.418 -07 000000561 INF: FPGA: Recv ZPIEZORD 24749
17-03-17 18:43:17.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:17.428 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.8 V.
17-03-17 18:43:17.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29231 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29231 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29227 (-127.3 uncal um), Max = 29234 (-127.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:43:17.428 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29231, posNoise = 3, negNoise = 4
17-03-17 18:43:17.428 -07 000000610 INF: Z Motor: After move to -0.128103, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:17.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:43:17.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:17.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:17.428 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:17.428 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:17.428 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:43:17.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:17.428 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:43:17.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:43:17.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:43:17.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:43:17.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:43:17.428 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:43:17.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:43:17.438 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:43:17.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:43:17.438 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:43:17.448 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:43:17.448 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:43:17.448 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:43:17.448 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:43:17.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28160 150\n [Camera]
17-03-17 18:43:17.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:43:18.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:43:18.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:43:18.048 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:18.048 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:18.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:43:18.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:43:18.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:43:18.048 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:18.048 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:18.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 18:43:18.238 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28160 779
17-03-17 18:43:18.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:43:18.428 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:43:18.428 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:43:18.428 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:18.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:43:18.428 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:43:18.428 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:18.428 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:18.428 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:18.428 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:43:18.438 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:43:18.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:43:18.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:43:18.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:18.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:43:18.578 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:18.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:43:18.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:43:18.588 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:18.588 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:18.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:43:18.768 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:43:18.768 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:43:18.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28160 150' command took 2 ms to send, 1308 ms to get response, and 1317 ms overall
17-03-17 18:43:18.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:43:18.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.12810949712695. ------
17-03-17 18:43:18.778 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13454 mm
17-03-17 18:43:18.778 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:43:18.778 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:18.778 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:43:18.778 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:43:18.778 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29390, sync = True, waitForSettling = False)
17-03-17 18:43:18.788 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:18.788 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:43:18.788 -07 000000438 INF: Z Motor: Moving to -0.134539 mm, started at -0.128109 mm, distance = -6.43 um
17-03-17 18:43:18.788 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:18.788 -07 000000551 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:43:18.798 -07 000000501 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:18.798 -07 000000501 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:18.798 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:43:18.798 -07 000000501 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:43:18.798 -07 000000438 INF: FPGA: Xmit ZDACW 29390\n [Z Motor]
17-03-17 18:43:18.798 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:43:18.808 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:43:18.808 -07 000000438 INF: FPGA: 'ZDACW 29390' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:43:18.818 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:43:18.828 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:18.828 -07 000000480 INF: FPGA: Recv ZDACR 29390
17-03-17 18:43:18.838 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:43:18.838 -07 000000438 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:43:18.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:43:18.968 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:43:18.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:18.968 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:43:18.968 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:43:18.968 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:18.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:18.968 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:43:18.968 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:18.978 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:43:19.008 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:43:19.008 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:43:19.188 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:43:19.188 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:43:19.218 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:19.228 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:43:19.228 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 18:43:19.228 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:19.228 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:43:19.228 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 18:43:19.788 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 3.993549,
17-03-17 18:43:20.178 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:20.178 -07 000000478 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:43:20.188 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:20.188 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:20.198 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:43:20.198 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:43:20.198 -07 000000501 INF: Y Motor: Moved to 74.0088 after 1417 ms (table move)
17-03-17 18:43:20.198 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134539 mm (DAC = 29390)
17-03-17 18:43:20.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30228
17-03-17 18:43:20.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.218 -07 000000431 INF: FPGA: Recv ZSGSRD 30226
17-03-17 18:43:20.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.228 -07 000000431 INF: FPGA: Recv ZSGSRD 30233
17-03-17 18:43:20.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.238 -07 000000476 INF: FPGA: Recv ZSGSRD 30231
17-03-17 18:43:20.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.248 -07 000000476 INF: FPGA: Recv ZSGSRD 30234
17-03-17 18:43:20.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.258 -07 000000476 INF: FPGA: Recv ZSGSRD 30236
17-03-17 18:43:20.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.268 -07 000000431 INF: FPGA: Recv ZSGSRD 30237
17-03-17 18:43:20.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.278 -07 000000431 INF: FPGA: Recv ZSGSRD 30231
17-03-17 18:43:20.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.288 -07 000000438 INF: FPGA: Recv ZSGSRD 30230
17-03-17 18:43:20.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:20.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30230
17-03-17 18:43:20.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.308 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:20.308 -07 000000438 INF: FPGA: Recv ZPIEZORD 26135
17-03-17 18:43:20.318 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.318 -07 000000561 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.485 V. Piezo Error = -9.0 V.
17-03-17 18:43:20.318 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30232 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30231 (-133.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30226 (-133.7 uncal um), Max = 30237 (-133.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:43:20.318 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30232, posNoise = 5, negNoise = 6
17-03-17 18:43:20.318 -07 000000561 INF: Z Motor: After move to -0.134539, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:20.318 -07 000000561 INF: Z Motor: Settle wait time = 1419 ms, measure time = 111 ms (allowed 150 ms), total time = 1530 ms
17-03-17 18:43:20.318 -07 000000561 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:43:20.358 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 18:43:20.358 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:43:20.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:20.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:20.358 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:20.358 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:20.358 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:43:20.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:20.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:43:20.358 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:43:20.368 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:43:20.368 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:43:20.368 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:43:20.368 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:43:20.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:43:20.418 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:43:20.618 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:43:20.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:43:20.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:43:20.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 18:43:20.658 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:43:20.658 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:43:20.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:43:20.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 18:43:20.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:20.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:43:20.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 18:43:20.758 -07 000000501 INF: Autofocus start
17-03-17 18:43:20.758 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:20.758 -07 000000501 INF: MeasureProfile start
17-03-17 18:43:20.768 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:20.768 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:43:20.768 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:43:20.778 -07 000000501 INF: MeasureProfile done
17-03-17 18:43:20.778 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:43:20.778 -07 000000501 INF: Autofocus finished
17-03-17 18:43:20.968 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:43:20.968 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:43:20.968 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134540133480852. ----------
17-03-17 18:43:20.978 -07 000000610 INF: Cycle	16	Tile	18	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:43:20.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27897, sync = True, waitForSettling = True)
17-03-17 18:43:20.978 -07 000000610 INF: Z Motor: Moving to -0.127704 mm, started at -0.134540 mm, distance = 6.84 um
17-03-17 18:43:20.978 -07 000000610 INF: FPGA: Xmit ZDACW 27897\n [Z Motor]
17-03-17 18:43:20.978 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:43:20.988 -07 000000610 INF: FPGA: 'ZDACW 27897' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:43:20.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:20.988 -07 000000623 INF: FPGA: Recv ZDACR 27897
17-03-17 18:43:20.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:20.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:43:21.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29171
17-03-17 18:43:21.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.158 -07 000000551 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:43:21.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29159
17-03-17 18:43:21.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.178 -07 000000478 INF: FPGA: Recv ZSGSRD 29171
17-03-17 18:43:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.188 -07 000000480 INF: FPGA: Recv ZSGSRD 29165
17-03-17 18:43:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29169
17-03-17 18:43:21.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.208 -07 000000551 INF: FPGA: Recv ZSGSRD 29167
17-03-17 18:43:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.218 -07 000000501 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:43:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:43:21.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:21.238 -07 000000478 INF: FPGA: Recv ZSGSRD 29167
17-03-17 18:43:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:21.248 -07 000000480 INF: FPGA: Recv ZPIEZORD 24747
17-03-17 18:43:21.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:21.258 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.7 V.
17-03-17 18:43:21.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29168 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29170 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29159 (-126.9 uncal um), Max = 29171 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:43:21.258 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29168, posNoise = 3, negNoise = 9
17-03-17 18:43:21.258 -07 000000610 INF: Z Motor: After move to -0.127704, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:21.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:43:21.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:21.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:21.258 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:21.258 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:43:21.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:43:21.258 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:43:21.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:43:21.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:43:21.258 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:21.258 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:21.258 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:43:21.258 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:43:21.268 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:43:21.268 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:43:21.268 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:43:21.268 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:43:21.278 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:43:21.278 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:43:21.278 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:43:21.278 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:43:21.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28074 150\n [Camera]
17-03-17 18:43:21.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:43:21.618 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:21.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:43:21.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:43:21.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:43:21.868 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:21.868 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:21.878 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:43:21.878 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:43:21.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:43:21.878 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:21.878 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:21.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:43:22.068 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28074 779
17-03-17 18:43:22.218 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:43:22.248 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:43:22.248 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:43:22.248 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:22.248 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:43:22.258 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:43:22.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:22.258 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:43:22.258 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:43:22.258 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:43:22.268 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:43:22.408 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:43:22.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:43:22.408 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:22.408 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:22.408 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:43:22.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:43:22.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:43:22.408 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:22.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:22.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:43:22.598 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:43:22.598 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:43:22.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28074 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-17 18:43:22.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:43:22.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127704771762019. ------
17-03-17 18:43:22.598 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:22.598 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13413 mm
17-03-17 18:43:22.598 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:43:22.598 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:43:22.598 -07 000000551 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:43:22.608 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:22.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:43:22.808 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:43:22.808 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:22.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 18:43:22.808 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:43:22.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:22.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:43:22.818 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 13 ms.
17-03-17 18:43:22.818 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 18:43:22.828 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 18:43:22.838 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29300, sync = True, waitForSettling = False)
17-03-17 18:43:22.838 -07 000000431 INF: Z Motor: Moving to -0.134127 mm, started at -0.127705 mm, distance = -6.42 um
17-03-17 18:43:22.838 -07 000000431 INF: FPGA: Xmit ZDACW 29300\n [Z Motor]
17-03-17 18:43:22.838 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:22.838 -07 000000501 INF: FPGA: Recv YRDPOS 151571
17-03-17 18:43:22.838 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:43:22.838 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 229 ms to get response, and 239 ms overall
17-03-17 18:43:22.838 -07 000000551 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:22.848 -07 000000431 INF: FPGA: 'ZDACW 29300' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:43:22.848 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:22.848 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 239 ms to get response, and 242 ms overall
17-03-17 18:43:22.848 -07 000000501 INF: FPGA: Recv ZDACR 29300
17-03-17 18:43:22.848 -07 000000551 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:43:22.848 -07 000000551 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:43:22.858 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:22.858 -07 000000431 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 18:43:22.858 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:43:22.868 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:43:23.068 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:43:23.068 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:43:23.228 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:43:23.228 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 384 ms overall
17-03-17 18:43:23.258 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:23.258 -07 000000462 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:43:23.268 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:23.268 -07 000000551 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:23.268 -07 000000551 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:43:23.268 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 18:43:24.218 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:24.218 -07 000000012 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:43:24.228 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:24.228 -07 000000551 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:24.238 -07 000000551 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:43:24.238 -07 000000551 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:43:24.238 -07 000000551 INF: Y Motor: Moved to 74.8330 after 1635 ms (table move)
17-03-17 18:43:24.238 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134127 mm (DAC = 29300)
17-03-17 18:43:24.238 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.248 -07 000000431 INF: FPGA: Recv ZSGSRD 30162
17-03-17 18:43:24.248 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:43:24.248 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.248 -07 000000431 INF: FPGA: Recv ZSGSRD 30166
17-03-17 18:43:24.258 -07 000000478 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:43:24.258 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.258 -07 000000551 INF: FPGA: Recv ZSGSRD 30165
17-03-17 18:43:24.268 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.268 -07 000000462 INF: FPGA: Recv ZSGSRD 30165
17-03-17 18:43:24.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.278 -07 000000551 INF: FPGA: Recv ZSGSRD 30168
17-03-17 18:43:24.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.288 -07 000000462 INF: FPGA: Recv ZSGSRD 30175
17-03-17 18:43:24.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30166
17-03-17 18:43:24.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.308 -07 000000462 INF: FPGA: Recv ZSGSRD 30175
17-03-17 18:43:24.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.318 -07 000000012 INF: FPGA: Recv ZSGSRD 30170
17-03-17 18:43:24.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:24.328 -07 000000431 INF: FPGA: Recv ZSGSRD 30167
17-03-17 18:43:24.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.338 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:24.338 -07 000000480 INF: FPGA: Recv ZPIEZORD 26054
17-03-17 18:43:24.348 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:24.348 -07 000000478 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.471 V. Piezo Error = -9.1 V.
17-03-17 18:43:24.348 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30168 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30166 (-133.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30162 (-133.3 uncal um), Max = 30175 (-133.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:43:24.348 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30168, posNoise = 7, negNoise = 6
17-03-17 18:43:24.348 -07 000000478 INF: Z Motor: After move to -0.134127, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:24.348 -07 000000478 INF: Z Motor: Settle wait time = 1402 ms, measure time = 102 ms (allowed 150 ms), total time = 1504 ms
17-03-17 18:43:24.348 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:43:24.398 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1792 ms
17-03-17 18:43:24.398 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:43:24.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:24.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:24.398 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:24.408 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:24.408 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:43:24.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:24.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:43:24.408 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:43:24.408 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:43:24.408 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:43:24.418 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:43:24.418 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:43:24.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:43:24.468 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:43:24.668 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:43:24.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:43:24.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:43:24.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 18:43:24.708 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:43:24.708 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:43:24.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 288 ms overall
17-03-17 18:43:24.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:43:24.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:24.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:43:24.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:43:24.808 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:43:24.808 -07 000000541 INF: Autofocus start
17-03-17 18:43:24.808 -07 000000541 INF: MeasureProfile start
17-03-17 18:43:24.818 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:43:24.818 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 18:43:24.818 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:43:24.818 -07 000000541 INF: MeasureProfile done
17-03-17 18:43:24.818 -07 000000541 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:43:24.818 -07 000000541 INF: Autofocus finished
17-03-17 18:43:25.018 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:43:25.018 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:43:25.028 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.13412898390378. ----------
17-03-17 18:43:25.028 -07 000000610 INF: Cycle	16	Tile	19	Exposure Settings		A	394	G	189	T	189	C	394
17-03-17 18:43:25.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27778, sync = True, waitForSettling = True)
17-03-17 18:43:25.028 -07 000000610 INF: Z Motor: Moving to -0.127160 mm, started at -0.134129 mm, distance = 6.97 um
17-03-17 18:43:25.028 -07 000000610 INF: FPGA: Xmit ZDACW 27778\n [Z Motor]
17-03-17 18:43:25.028 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:43:25.038 -07 000000610 INF: FPGA: 'ZDACW 27778' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:43:25.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:43:25.038 -07 000000501 INF: FPGA: Recv ZDACR 27778
17-03-17 18:43:25.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:43:25.148 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.015368,
17-03-17 18:43:25.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.198 -07 000000551 INF: FPGA: Recv ZSGSRD 29081
17-03-17 18:43:25.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:43:25.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.208 -07 000000551 INF: FPGA: Recv ZSGSRD 29082
17-03-17 18:43:25.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.218 -07 000000512 INF: FPGA: Recv ZSGSRD 29084
17-03-17 18:43:25.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29086
17-03-17 18:43:25.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29091
17-03-17 18:43:25.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.258 -07 000000541 INF: FPGA: Recv ZSGSRD 29081
17-03-17 18:43:25.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:43:25.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29083
17-03-17 18:43:25.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.278 -07 000000512 INF: FPGA: Recv ZSGSRD 29082
17-03-17 18:43:25.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29086
17-03-17 18:43:25.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:43:25.298 -07 000000541 INF: FPGA: Recv ZSGSRD 29081
17-03-17 18:43:25.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:43:25.308 -07 000000541 INF: FPGA: Recv ZPIEZORD 24649
17-03-17 18:43:25.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:25.318 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.239 V. Piezo Error = -9.7 V.
17-03-17 18:43:25.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29084 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29082 (-126.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29081 (-126.4 uncal um), Max = 29091 (-126.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:43:25.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29084, posNoise = 7, negNoise = 3
17-03-17 18:43:25.318 -07 000000610 INF: Z Motor: After move to -0.127160, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:43:25.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 18:43:25.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:43:25.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:43:25.318 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:43:25.318 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:43:25.318 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:43:25.318 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:43:25.318 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:43:25.318 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:43:25.318 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:43:25.318 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:43:25.318 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:43:25.318 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:43:25.328 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:43:25.328 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:43:25.328 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:43:25.328 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:43:25.338 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:43:25.338 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:43:25.338 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:43:25.338 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:43:25.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 27954 150\n [Camera]
17-03-17 18:43:25.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:43:25.928 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:43:25.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:43:25.928 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:25.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:25.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:43:25.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:43:25.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:43:25.938 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:25.938 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:25.938 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:43:26.128 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27954 779
17-03-17 18:43:26.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:43:26.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:43:26.308 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:43:26.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:26.318 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:43:26.318 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:43:26.318 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:26.318 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:26.318 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:43:26.318 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:43:26.328 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:43:26.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:43:26.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:43:26.468 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:43:26.468 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:43:26.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:43:26.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:43:26.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:43:26.468 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:43:26.468 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:43:26.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:43:26.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:26.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 15. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:43:26.658 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:43:26.658 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:43:26.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 27954 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-17 18:43:26.838 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:43:26.848 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:43:26.848 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:26.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:43:26.848 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:43:26.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:43:26.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:43:26.848 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:43:26.848 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:43:26.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:43:26.858 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:43:26.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 18:43:26.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:43:26.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:43:26.948 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 18:43:26.948 -07 000000610 INF: Imaging Cycle 16: ScanTilesCommand Cycle 16 time end. Duration was 164235 ms.
17-03-17 18:43:26.948 -07 000000610 INF: =================== Cycle #16 ===================
17-03-17 18:43:26.948 -07 000000610 INF: ===================  ===================
17-03-17 18:43:26.948 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:43:26.948 -07 000000551 INF: FPGA: Recv EXLED1ADCR 22
17-03-17 18:43:26.958 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:43:26.958 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-17 18:43:26.958 -07 000000478 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 16, FrontChillerTemperature: 4.015368, FrontChillerHeatSinkTemperature: 0.633264, AmbientTemperature: 18.77272, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.51616, GreenLEDSensorTemperature: 26.19806, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-17 18:43:26.968 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.