17-03-17 18:43:27.028 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:43:27.028 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:43:27.028 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 18:43:27.028 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:27.028 -07 000000431 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:43:27.038 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:43:27.038 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:27.038 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:43:27.038 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:43:27.038 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:43:27.148 -07 000000012 INF: FPGA: Recv YMVTO 154377 871
17-03-17 18:43:27.148 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 18:43:27.148 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:43:27.148 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 871 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 18:43:27.148 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 18:43:30.148 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:43:30.148 -07 000000478 INF: FPGA: Recv YRDPOS 154381
17-03-17 18:43:30.158 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:30.158 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:43:30.168 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:43:30.168 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-17 18:43:30.168 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3144 ms
17-03-17 18:43:30.178 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 60° ===================
17-03-17 18:43:30.178 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:43:30.178 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:43:30.178 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:43:30.188 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:43:30.188 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:43:30.188 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-17 18:43:30.198 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:43:30.198 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 60° ===================
17-03-17 18:43:30.198 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:43:30.198 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:43:30.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:43:30.228 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:43:30.228 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:43:30.228 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:43:30.518 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.038479,
17-03-17 18:43:30.528 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:43:30.548 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:43:30.548 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:43:30.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:43:30.618 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:43:30.618 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:43:30.718 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:43:30.718 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:43:30.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:30.748 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:43:30.748 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:43:30.748 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:43:30.878 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:43:30.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:31.618 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:31.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=160, R2=167, Total=327. Warn if over 250 bubbles per interval.
17-03-17 18:43:34.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:34.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:34.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:34.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:34.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:34.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:34.978 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:43:34.978 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:43:35.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:35.138 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:43:35.138 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:43:35.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:35.298 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:43:35.298 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:43:35.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:43:35.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:43:35.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:35.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:35.898 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.027603,
17-03-17 18:43:35.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:35.918 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:43:35.918 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:43:36.618 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 18:43:36.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=162, R2=169, Total=331. Warn if over 250 bubbles per interval.
17-03-17 18:43:37.138 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:43:37.138 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:43:37.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:43:37.158 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:43:37.158 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:43:37.158 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:43:37.288 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:43:37.308 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:43:37.308 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:43:37.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:43:37.378 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:43:37.378 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:43:37.478 -07 000000610 INF: =================== Cycle #17, Pumping Reagent CMS (4) ===================
17-03-17 18:43:37.478 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:43:37.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:37.508 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:43:37.508 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:43:37.508 -07 000000610 INF: =================== Cycle #17, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:43:37.638 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:43:37.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:39.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:39.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:39.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:39.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:39.598 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:43:39.598 -07 000000610 INF: =================== Cycle #17, Pumping Reagent CMS (4) ===================
17-03-17 18:43:39.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:39.758 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:43:39.758 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:43:39.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:39.918 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:43:39.918 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:43:39.918 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:43:40.048 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:43:40.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:40.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:40.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:40.538 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:43:40.538 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:43:41.268 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.99219,
17-03-17 18:43:41.618 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-17 18:43:41.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=166, R2=172, Total=338. Warn if over 250 bubbles per interval.
17-03-17 18:43:41.758 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:43:41.758 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:43:41.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:43:41.778 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:43:41.778 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:43:41.778 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:43:41.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:43:41.948 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:43:41.948 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:43:41.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:43:42.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:43:42.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:43:42.118 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:43:42.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:43:42.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:42.148 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:43:42.148 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:43:42.148 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:43:42.278 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:43:42.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:43.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:43.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:43.218 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:43:43.218 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:43:43.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:43.378 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:43:43.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:43:43.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:43.538 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:43:43.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:43:43.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:43:43.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:43:43.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:44.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:44.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:44.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:43:44.158 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:43:44.158 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:43:44.158 -07 000000569 INF: WaitCommand(10000) start
17-03-17 18:43:44.158 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:43:45.378 -07 000000551 INF: AsyncDelayTimer waited 1213ms
17-03-17 18:43:45.378 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 18:43:45.408 -07 000000551 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:43:45.408 -07 000000551 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:43:45.538 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:43:45.578 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:46.628 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:43:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=166, R2=173, Total=339. Warn if over 250 bubbles per interval.
17-03-17 18:43:46.638 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.99219,
17-03-17 18:43:47.108 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:47.138 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:47.558 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 18:43:47.588 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:43:47.588 -07 000000551 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:43:47.588 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:43:47.588 -07 000000551 INF: ===================  ===================
17-03-17 18:43:51.618 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:51.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=166, R2=173, Total=339. Warn if over 250 bubbles per interval.
17-03-17 18:43:52.008 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.971733,
17-03-17 18:43:54.168 -07 000000569 INF: WaitCommand(10000) end
17-03-17 18:43:54.168 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:43:54.168 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:43:54.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:43:54.198 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:43:54.198 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:43:54.198 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:43:54.328 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:43:54.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:43:56.618 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:43:56.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=166, R2=173, Total=339. Warn if over 250 bubbles per interval.
17-03-17 18:43:57.378 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.994908,
17-03-17 18:44:00.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:00.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:00.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:00.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:01.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:01.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:01.618 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 9 R1 8
17-03-17 18:44:01.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=8, R2=9, Total=17. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=182, Total=356. Warn if over 250 bubbles per interval.
17-03-17 18:44:01.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:01.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:02.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:02.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:02.328 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:44:02.328 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:44:02.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:02.488 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:44:02.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:44:02.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:02.648 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:44:02.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:44:02.648 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:44:02.738 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.994908,
17-03-17 18:44:02.778 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:44:02.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:03.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:03.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:03.268 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:44:03.268 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:44:04.488 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:44:04.488 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:44:04.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:44:04.508 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:44:04.508 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:44:04.508 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:44:04.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:44:04.738 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:44:04.738 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:44:04.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:44:04.808 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:44:04.808 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:44:04.908 -07 000000610 INF: =================== Cycle #17, Pumping Reagent IMT (1) ===================
17-03-17 18:44:04.908 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:44:04.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:04.948 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:44:04.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:44:04.948 -07 000000610 INF: =================== Cycle #17, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:44:05.078 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:44:05.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:06.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:06.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:06.618 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:44:06.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:07.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:07.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:07.038 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:44:07.038 -07 000000610 INF: =================== Cycle #17, Pumping Reagent IMT (1) ===================
17-03-17 18:44:07.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:07.198 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:44:07.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:44:07.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:07.358 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:44:07.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:44:07.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:44:07.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:44:07.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:07.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:07.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:07.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:44:07.978 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:44:08.108 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.012614,
17-03-17 18:44:09.198 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:44:09.198 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:44:09.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:44:09.218 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:44:09.218 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:44:09.218 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:44:09.448 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:44:09.468 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:44:09.468 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:44:09.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:44:09.538 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:44:09.538 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:44:09.638 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:44:09.638 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:44:09.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:09.668 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:44:09.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:44:09.668 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:44:09.798 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:44:09.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:10.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:10.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:10.738 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:44:10.738 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:44:10.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:10.898 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:44:10.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:44:11.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:11.058 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:44:11.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:44:11.058 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:44:11.188 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:44:11.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:11.618 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:11.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:11.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:11.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:11.678 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:44:11.678 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:44:11.678 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 65° ===================
17-03-17 18:44:11.678 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:44:11.678 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:44:11.678 -07 000000475 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:44:11.688 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:44:11.688 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:44:11.688 -07 000000551 INF: FPGA: Recv TEC2EN 
17-03-17 18:44:11.698 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:44:11.698 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 65° ===================
17-03-17 18:44:11.698 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:44:11.698 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:44:13.478 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.016692,
17-03-17 18:44:16.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:18.848 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.028963,
17-03-17 18:44:21.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:21.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:24.218 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.037119,
17-03-17 18:44:26.618 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:26.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:29.588 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.015368,
17-03-17 18:44:31.618 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:31.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:34.958 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.027603,
17-03-17 18:44:36.618 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:36.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:40.328 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.0344,
17-03-17 18:44:41.618 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:41.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:41.708 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:44:41.708 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:44:41.708 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:44:41.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:41.838 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:44:41.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:44:41.838 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:44:41.968 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:44:42.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:42.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:42.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:42.578 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:44:42.578 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:44:42.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:42.738 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:44:42.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:44:42.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:44:42.898 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:44:42.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:44:42.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:44:43.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:44:43.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:43.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:43.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:43.518 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:44:43.518 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:44:43.518 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:44:43.518 -07 000000415 INF: WaitCommand(30000) start
17-03-17 18:44:43.518 -07 000000478 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:44:44.738 -07 000000478 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:44:44.738 -07 000000478 INF: LanePump: Xmit /1?\r
17-03-17 18:44:44.768 -07 000000478 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:44:44.768 -07 000000478 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:44:44.898 -07 000000478 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:44:44.938 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:45.698 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.000345,
17-03-17 18:44:46.618 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:46.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:47.278 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:47.308 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:44:47.728 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 18:44:47.758 -07 000000478 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:44:47.758 -07 000000478 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:44:47.758 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:44:47.758 -07 000000478 INF: ===================  ===================
17-03-17 18:44:51.068 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.944485,
17-03-17 18:44:51.618 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:51.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:44:56.438 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.964938,
17-03-17 18:44:56.618 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:44:56.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:01.618 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:01.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:01.818 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.966297,
17-03-17 18:45:06.618 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:06.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:07.178 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.981281,
17-03-17 18:45:11.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:11.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:12.548 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.997626,
17-03-17 18:45:13.528 -07 000000415 INF: WaitCommand(30000) end
17-03-17 18:45:13.528 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 22° ===================
17-03-17 18:45:13.528 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:45:13.528 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:45:13.528 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:45:13.538 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:45:13.538 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:45:13.538 -07 000000475 INF: FPGA: Recv TEC2EN 
17-03-17 18:45:13.548 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:13.548 -07 000000610 INF: =================== Cycle #17, Flow Cell Temp 22° ===================
17-03-17 18:45:13.548 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:45:13.548 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:45:13.548 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:45:13.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:13.578 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:45:13.578 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:45:13.578 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:45:13.708 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:45:13.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:16.618 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:16.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:16.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:17.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:17.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:17.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:17.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:17.808 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:45:17.808 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:45:17.918 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.016692,
17-03-17 18:45:17.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:17.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:45:17.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:45:18.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:18.128 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:45:18.128 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:45:18.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:45:18.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:45:18.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:18.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:18.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:18.748 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:45:18.748 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:45:19.968 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:45:19.968 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:45:19.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:45:19.988 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:45:19.988 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:45:19.988 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:45:20.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:45:20.158 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:45:20.158 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:45:20.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:45:20.228 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:45:20.228 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:45:20.328 -07 000000610 INF: =================== Cycle #17, Pumping Reagent USM (2) ===================
17-03-17 18:45:20.328 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:45:20.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:20.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:45:20.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:45:20.358 -07 000000610 INF: =================== Cycle #17, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:45:20.488 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:45:20.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:21.618 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:21.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:21.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:21.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:22.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:22.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:22.448 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:45:22.448 -07 000000610 INF: =================== Cycle #17, Pumping Reagent USM (2) ===================
17-03-17 18:45:22.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:22.608 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:45:22.608 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:45:22.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:22.768 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:45:22.768 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:45:22.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:45:22.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:45:22.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:23.288 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.997626,
17-03-17 18:45:23.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:23.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:23.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:45:23.388 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:45:24.608 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:45:24.608 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:45:24.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:45:24.628 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:45:24.628 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:45:24.628 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:45:24.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:45:24.798 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:45:24.798 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:45:24.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:45:24.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:45:24.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:45:24.968 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:45:24.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:45:24.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:24.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:45:24.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:45:24.998 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:45:25.128 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:45:25.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:26.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:26.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:26.068 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:45:26.068 -07 000000610 INF: =================== Cycle #17, Pumping Reagent PR2 (3) ===================
17-03-17 18:45:26.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:26.228 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:45:26.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:45:26.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:45:26.388 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:45:26.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:45:26.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:45:26.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:45:26.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:26.618 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:26.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:26.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:27.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:27.008 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:45:27.008 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:45:27.008 -07 000000618 INF: WaitCommand(10000) start
17-03-17 18:45:27.008 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:45:27.008 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:45:28.228 -07 000000608 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:45:28.228 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-17 18:45:28.258 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:45:28.258 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:45:28.388 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:45:28.428 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:28.658 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.009895,
17-03-17 18:45:29.958 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:29.988 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:45:30.408 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 18:45:30.438 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:45:30.438 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:45:30.438 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:45:30.438 -07 000000608 INF: ===================  ===================
17-03-17 18:45:31.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:31.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:34.028 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.018051,
17-03-17 18:45:36.618 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:36.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:37.018 -07 000000618 INF: WaitCommand(10000) end
17-03-17 18:45:37.018 -07 000000610 INF: =================== Cycle #17, Imaging ===================
17-03-17 18:45:37.018 -07 000000610 INF: Imaging Cycle 17: ScanTilesCommand Cycle 17 time start.
17-03-17 18:45:37.018 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:45:37.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:45:37.048 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:45:37.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:45:37.048 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:45:37.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:45:37.368 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:45:37.368 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:45:37.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:45:37.438 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:45:37.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:37.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:37.438 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:45:37.438 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:37.438 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:45:37.438 -07 000000429 INF: FPGA: Recv EXLED1ON 
17-03-17 18:45:37.448 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:45:37.448 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:45:37.448 -07 000000429 INF: FPGA: Recv EXLED1ADCR 23160
17-03-17 18:45:37.458 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:37.458 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23160 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-17 18:45:37.458 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:45:37.458 -07 000000012 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:45:37.468 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:37.468 -07 000000618 INF: RedLED: LED was on for 20 ms
17-03-17 18:45:37.468 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 18:45:37.468 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:45:37.468 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:37.468 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:45:37.468 -07 000000429 INF: FPGA: Recv EXLED2ON 
17-03-17 18:45:37.478 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:37.478 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:45:37.478 -07 000000429 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 18:45:37.488 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:37.488 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 18:45:37.488 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:45:37.488 -07 000000012 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:45:37.498 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:37.498 -07 000000618 INF: GreenLED: LED was on for 19 ms
17-03-17 18:45:37.498 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 18:45:37.498 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:45:37.498 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 18:45:37.508 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:37.508 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:45:38.008 -07 000000429 INF: FPGA: Recv EMOUT
17-03-17 18:45:38.008 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:45:38.008 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:45:38.008 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 18:45:38.018 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:38.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:45:38.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127165137942111. ------
17-03-17 18:45:38.018 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:38.018 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17919 mm
17-03-17 18:45:38.018 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:45:38.028 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:45:38.028 -07 000000429 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 18:45:38.028 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:38.978 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 39144, sync = True, waitForSettling = False)
17-03-17 18:45:38.978 -07 000000608 INF: Z Motor: Moving to -0.179190 mm, started at -0.127165 mm, distance = -52.02 um
17-03-17 18:45:38.978 -07 000000608 INF: FPGA: Xmit ZDACW 39144\n [Z Motor]
17-03-17 18:45:39.508 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:39.508 -07 000000424 INF: FPGA: Recv YRDPOS 154381
17-03-17 18:45:39.508 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:45:39.508 -07 000000608 INF: FPGA: 'ZDACW 39144' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 18:45:39.508 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:39.508 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1470 ms to get response, and 1479 ms overall
17-03-17 18:45:39.508 -07 000000429 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:39.508 -07 000000429 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:45:39.508 -07 000000429 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:45:39.508 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1480 ms to get response, and 1482 ms overall
17-03-17 18:45:39.508 -07 000000424 INF: FPGA: Recv ZDACR 39144
17-03-17 18:45:39.518 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:45:39.518 -07 000000608 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 18:45:39.518 -07 000000429 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:45:39.528 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:45:39.728 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:45:39.728 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 18:45:39.818 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.003063,
17-03-17 18:45:41.198 -07 000000478 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 18:45:41.198 -07 000000429 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1694 ms overall
17-03-17 18:45:41.198 -07 000000429 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:45:41.198 -07 000000429 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:45:41.198 -07 000000429 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1694 ms, distance = 15.469 mm, average velocity = 9.131 mm/sec
17-03-17 18:45:41.618 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:41.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:44.048 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:44.048 -07 000000478 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:45:44.058 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:44.058 -07 000000429 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:44.078 -07 000000429 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:45:44.078 -07 000000429 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:45:44.078 -07 000000429 INF: Y Motor: Moved to 59.9116 after 6050 ms
17-03-17 18:45:44.078 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179190 mm (DAC = 39144)
17-03-17 18:45:44.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.078 -07 000000424 INF: FPGA: Recv ZSGSRD 37186
17-03-17 18:45:44.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:45:44.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.088 -07 000000608 INF: FPGA: Recv ZSGSRD 37181
17-03-17 18:45:44.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.098 -07 000000424 INF: FPGA: Recv ZSGSRD 37179
17-03-17 18:45:44.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.108 -07 000000608 INF: FPGA: Recv ZSGSRD 37184
17-03-17 18:45:44.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.118 -07 000000424 INF: FPGA: Recv ZSGSRD 37182
17-03-17 18:45:44.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.128 -07 000000486 INF: FPGA: Recv ZSGSRD 37183
17-03-17 18:45:44.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.138 -07 000000608 INF: FPGA: Recv ZSGSRD 37180
17-03-17 18:45:44.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.148 -07 000000486 INF: FPGA: Recv ZSGSRD 37181
17-03-17 18:45:44.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.158 -07 000000608 INF: FPGA: Recv ZSGSRD 37183
17-03-17 18:45:44.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:44.168 -07 000000415 INF: FPGA: Recv ZSGSRD 37182
17-03-17 18:45:44.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.178 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:44.178 -07 000000429 INF: FPGA: Recv ZPIEZORD 33510
17-03-17 18:45:44.188 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.188 -07 000000618 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.973 V. Piezo Error = -8.1 V.
17-03-17 18:45:44.188 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37182 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37182 (-178.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37179 (-178.3 uncal um), Max = 37186 (-178.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:45:44.188 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37182, posNoise = 4, negNoise = 3
17-03-17 18:45:44.188 -07 000000618 INF: Z Motor: After move to -0.179190, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:44.188 -07 000000618 INF: Z Motor: Settle wait time = 5104 ms, measure time = 105 ms (allowed 150 ms), total time = 5209 ms
17-03-17 18:45:44.188 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:45:44.238 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6211 ms
17-03-17 18:45:44.238 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:45:44.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:44.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:44.238 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:44.238 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:45:44.238 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:44.238 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:44.238 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:45:44.238 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:45:44.268 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:45:44.268 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:45:44.268 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:45:44.268 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:45:44.288 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:45:44.288 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 18:45:44.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:45:44.328 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:45:44.528 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:45:44.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:45:44.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:45:44.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1183484744, 0x0, 559484976) start.
17-03-17 18:45:44.568 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:45:44.568 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:45:44.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:45:44.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1183484744, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:45:44.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:44.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:45:44.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:45:44.768 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:44.768 -07 000000627 INF: Image SNR check: start
17-03-17 18:45:44.768 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:44.778 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:44.778 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:45:44.778 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=71.23]
17-03-17 18:45:44.778 -07 000000627 INF: Autofocus start
17-03-17 18:45:44.778 -07 000000627 INF: MeasureProfile start
17-03-17 18:45:44.788 -07 000000627 INF: MeasureProfile done
17-03-17 18:45:44.788 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:45:44.788 -07 000000627 INF: Autofocus finished
17-03-17 18:45:44.978 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:45:44.978 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:45:44.978 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179188407866091. ----------
17-03-17 18:45:44.978 -07 000000610 INF: Cycle	17	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:45:44.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37676, sync = True, waitForSettling = True)
17-03-17 18:45:44.988 -07 000000610 INF: Z Motor: Moving to -0.172470 mm, started at -0.179188 mm, distance = 6.72 um
17-03-17 18:45:44.988 -07 000000610 INF: FPGA: Xmit ZDACW 37676\n [Z Motor]
17-03-17 18:45:44.988 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:45:44.998 -07 000000610 INF: FPGA: 'ZDACW 37676' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:44.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:44.998 -07 000000429 INF: FPGA: Recv ZDACR 37676
17-03-17 18:45:45.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:45.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:45:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36142
17-03-17 18:45:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.178 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.997626,
17-03-17 18:45:45.178 -07 000000012 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:45:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:45:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.208 -07 000000608 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:45:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:45:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.238 -07 000000012 INF: FPGA: Recv ZSGSRD 36139
17-03-17 18:45:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:45:45.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.258 -07 000000608 INF: FPGA: Recv ZSGSRD 36139
17-03-17 18:45:45.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:45:45.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.268 -07 000000618 INF: FPGA: Recv ZSGSRD 36134
17-03-17 18:45:45.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:45.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.278 -07 000000012 INF: FPGA: Recv ZSGSRD 36133
17-03-17 18:45:45.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:45.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.288 -07 000000415 INF: FPGA: Recv ZSGSRD 36133
17-03-17 18:45:45.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.298 -07 000000478 INF: FPGA: Recv ZSGSRD 36140
17-03-17 18:45:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:45.308 -07 000000424 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:45:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:45.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:45.318 -07 000000486 INF: FPGA: Recv ZPIEZORD 32116
17-03-17 18:45:45.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:45.328 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.9 V.
17-03-17 18:45:45.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36137 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36138 (-171.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36133 (-171.6 uncal um), Max = 36142 (-171.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:45:45.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36137, posNoise = 5, negNoise = 4
17-03-17 18:45:45.328 -07 000000610 INF: Z Motor: After move to -0.172470, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:45.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 340 ms)
17-03-17 18:45:45.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:45.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:45.328 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:45.328 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:45.328 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:45:45.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:45:45.328 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:45:45.328 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:45.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:45:45.328 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:45:45.328 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:45:45.328 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:45:45.338 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:45:45.338 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:45:45.348 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:45:45.348 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:45:45.348 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:45:45.348 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:45:45.358 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:45:45.358 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:45:45.368 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:45:45.368 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 18:45:45.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37853 150\n [Camera]
17-03-17 18:45:45.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:45:45.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:45:45.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:45:45.968 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:45.968 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:45.968 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:45:45.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:45:45.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:45:45.968 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:45.968 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:45.968 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:45:46.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37853 780
17-03-17 18:45:46.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:45:46.368 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:45:46.368 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:45:46.368 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:46.368 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:45:46.368 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:45:46.368 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:46.378 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:45:46.378 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:45:46.378 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:45:46.388 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:45:46.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:45:46.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:45:46.498 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:46.628 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:45:46.628 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:46.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:45:46.628 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:46.628 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:45:46.628 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:46.638 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:46.638 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:45:46.688 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:45:46.688 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:45:46.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37853 150' command took 2 ms to send, 1315 ms to get response, and 1319 ms overall
17-03-17 18:45:46.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:45:46.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.172475106177951. ------
17-03-17 18:45:46.698 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:46.698 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17886 mm
17-03-17 18:45:46.698 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:45:46.698 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:45:46.698 -07 000000429 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:45:46.708 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:47.038 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:45:47.038 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:45:47.038 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:47.038 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:45:47.038 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:45:47.038 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:47.038 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:45:47.038 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:45:47.038 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 543 ms.
17-03-17 18:45:47.048 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:45:47.048 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39071, sync = True, waitForSettling = False)
17-03-17 18:45:47.048 -07 000000012 INF: Z Motor: Moving to -0.178856 mm, started at -0.172475 mm, distance = -6.38 um
17-03-17 18:45:47.048 -07 000000012 INF: FPGA: Xmit ZDACW 39071\n [Z Motor]
17-03-17 18:45:47.058 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:47.058 -07 000000608 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:45:47.058 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:45:47.058 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 347 ms to get response, and 362 ms overall
17-03-17 18:45:47.058 -07 000000429 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:47.058 -07 000000429 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:45:47.058 -07 000000429 INF: Y Motor: Moving 1330 steps2
17-03-17 18:45:47.058 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 357 ms to get response, and 365 ms overall
17-03-17 18:45:47.068 -07 000000012 INF: FPGA: 'ZDACW 39071' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:47.068 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:47.068 -07 000000608 INF: FPGA: Recv ZDACR 39071
17-03-17 18:45:47.078 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:45:47.078 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:47.078 -07 000000012 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:45:47.088 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:45:47.288 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:45:47.288 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 224 ms overall
17-03-17 18:45:47.448 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:45:47.448 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 18:45:47.478 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:47.478 -07 000000618 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:45:47.488 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:45:47.488 -07 000000429 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:47.488 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:45:47.488 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.831 mm, average velocity = 2.131 mm/sec
17-03-17 18:45:48.438 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:48.438 -07 000000627 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:45:48.448 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:48.448 -07 000000429 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:48.468 -07 000000429 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:45:48.468 -07 000000429 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:45:48.468 -07 000000429 INF: Y Motor: Moved to 60.7339 after 1766 ms (table move)
17-03-17 18:45:48.468 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178856 mm (DAC = 39071)
17-03-17 18:45:48.468 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.468 -07 000000012 INF: FPGA: Recv ZSGSRD 37130
17-03-17 18:45:48.478 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:45:48.478 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.478 -07 000000429 INF: FPGA: Recv ZSGSRD 37133
17-03-17 18:45:48.488 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.488 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.488 -07 000000012 INF: FPGA: Recv ZSGSRD 37127
17-03-17 18:45:48.498 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.498 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.498 -07 000000608 INF: FPGA: Recv ZSGSRD 37128
17-03-17 18:45:48.508 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.508 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.508 -07 000000415 INF: FPGA: Recv ZSGSRD 37128
17-03-17 18:45:48.518 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.518 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.518 -07 000000608 INF: FPGA: Recv ZSGSRD 37132
17-03-17 18:45:48.528 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.528 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.528 -07 000000012 INF: FPGA: Recv ZSGSRD 37138
17-03-17 18:45:48.538 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.538 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.538 -07 000000429 INF: FPGA: Recv ZSGSRD 37132
17-03-17 18:45:48.548 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.548 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.548 -07 000000415 INF: FPGA: Recv ZSGSRD 37127
17-03-17 18:45:48.558 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.558 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:48.558 -07 000000608 INF: FPGA: Recv ZSGSRD 37129
17-03-17 18:45:48.568 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.568 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:48.568 -07 000000478 INF: FPGA: Recv ZPIEZORD 33427
17-03-17 18:45:48.578 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:48.578 -07 000000486 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -8.2 V.
17-03-17 18:45:48.578 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37130 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37130 (-178.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37127 (-177.9 uncal um), Max = 37138 (-178.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:45:48.578 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37130, posNoise = 8, negNoise = 3
17-03-17 18:45:48.578 -07 000000486 INF: Z Motor: After move to -0.178856, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:48.578 -07 000000486 INF: Z Motor: Settle wait time = 1414 ms, measure time = 106 ms (allowed 150 ms), total time = 1520 ms
17-03-17 18:45:48.578 -07 000000486 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:45:48.628 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1927 ms
17-03-17 18:45:48.628 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:45:48.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:48.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:48.628 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:48.628 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:48.628 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:45:48.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:48.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:45:48.628 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:45:48.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:45:48.638 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:45:48.648 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:45:48.648 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:45:48.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:45:48.698 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:45:48.898 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:45:48.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:45:48.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:45:48.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-17 18:45:48.938 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:45:48.938 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:45:48.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:45:49.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:45:49.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:49.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:45:49.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-17 18:45:49.038 -07 000000478 INF: Autofocus start
17-03-17 18:45:49.038 -07 000000478 INF: MeasureProfile start
17-03-17 18:45:49.038 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:49.038 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:49.048 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:49.048 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:45:49.048 -07 000000478 INF: MeasureProfile done
17-03-17 18:45:49.048 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:45:49.048 -07 000000478 INF: Autofocus finished
17-03-17 18:45:49.248 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:45:49.248 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:45:49.248 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.178854348834719. ----------
17-03-17 18:45:49.248 -07 000000610 INF: Cycle	17	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:45:49.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37568, sync = True, waitForSettling = True)
17-03-17 18:45:49.258 -07 000000610 INF: Z Motor: Moving to -0.171975 mm, started at -0.178854 mm, distance = 6.88 um
17-03-17 18:45:49.258 -07 000000610 INF: FPGA: Xmit ZDACW 37568\n [Z Motor]
17-03-17 18:45:49.258 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:45:49.268 -07 000000610 INF: FPGA: 'ZDACW 37568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:49.268 -07 000000618 INF: FPGA: Recv ZDACR 37568
17-03-17 18:45:49.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:45:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.428 -07 000000486 INF: FPGA: Recv ZSGSRD 36061
17-03-17 18:45:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.438 -07 000000429 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:45:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.448 -07 000000478 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:45:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.458 -07 000000429 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:45:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.468 -07 000000415 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:45:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.478 -07 000000618 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:45:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.488 -07 000000415 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:45:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.498 -07 000000429 INF: FPGA: Recv ZSGSRD 36066
17-03-17 18:45:49.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:45:49.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:49.518 -07 000000415 INF: FPGA: Recv ZSGSRD 36061
17-03-17 18:45:49.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:49.528 -07 000000012 INF: FPGA: Recv ZPIEZORD 32017
17-03-17 18:45:49.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:49.538 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.9 V.
17-03-17 18:45:49.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36061 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36061 (-171.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36059 (-171.1 uncal um), Max = 36066 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:45:49.538 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36061, posNoise = 5, negNoise = 2
17-03-17 18:45:49.538 -07 000000610 INF: Z Motor: After move to -0.171975, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:49.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:45:49.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:49.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:49.538 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:49.538 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:49.538 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:45:49.538 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:45:49.538 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:45:49.538 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:49.538 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:45:49.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:45:49.538 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:45:49.538 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:45:49.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:45:49.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:45:49.548 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:45:49.548 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:45:49.558 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:45:49.558 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:45:49.558 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:45:49.558 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:45:49.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37745 150\n [Camera]
17-03-17 18:45:49.768 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:45:50.158 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:45:50.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:45:50.158 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:50.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:45:50.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:45:50.168 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:50.278 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:50.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) start.
17-03-17 18:45:50.278 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:50.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:45:50.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37745 780
17-03-17 18:45:50.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:45:50.598 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.997626,
17-03-17 18:45:50.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:45:50.668 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:45:50.668 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:50.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:45:50.678 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:45:50.678 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:50.678 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:45:50.678 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 18:45:50.678 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:45:50.688 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 18:45:50.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:45:50.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:45:50.698 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:50.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:45:50.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:45:50.698 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:50.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:50.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:45:50.708 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:50.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:45:50.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:45:50.888 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:45:50.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37745 150' command took 2 ms to send, 1311 ms to get response, and 1321 ms overall
17-03-17 18:45:50.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:45:50.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.171986866055177. ------
17-03-17 18:45:50.888 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17853 mm
17-03-17 18:45:50.888 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:45:50.888 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:51.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:45:51.098 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:45:51.098 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:51.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:45:51.098 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:45:51.098 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:51.108 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:45:51.108 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:45:51.108 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:45:51.108 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:45:51.118 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:45:51.118 -07 000000627 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:45:51.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:51.118 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:51.118 -07 000000478 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:45:51.118 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 228 ms overall
17-03-17 18:45:51.118 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38999, sync = True, waitForSettling = False)
17-03-17 18:45:51.118 -07 000000478 INF: Z Motor: Moving to -0.178526 mm, started at -0.171987 mm, distance = -6.54 um
17-03-17 18:45:51.128 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:51.128 -07 000000478 INF: FPGA: Xmit ZDACW 38999\n [Z Motor]
17-03-17 18:45:51.128 -07 000000627 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:51.128 -07 000000627 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:45:51.128 -07 000000627 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:45:51.148 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:45:51.158 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:45:51.748 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:45:51.748 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:45:51.748 -07 000000478 INF: FPGA: 'ZDACW 38999' command took 0 ms to send, 610 ms to get response, and 622 ms overall
17-03-17 18:45:51.748 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 591 ms to get response, and 623 ms overall
17-03-17 18:45:51.748 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:45:51.748 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:51.748 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 581 ms to get response, and 620 ms overall
17-03-17 18:45:51.748 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:51.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:51.748 -07 000000486 INF: FPGA: Recv ZDACR 38999
17-03-17 18:45:51.758 -07 000000478 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:45:51.758 -07 000000478 INF: Z Motor: MoveAbsStepped took 631 ms (did NOT wait for settling yet))
17-03-17 18:45:51.788 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:51.788 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:45:51.798 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:45:51.798 -07 000000627 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:51.798 -07 000000627 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:45:51.798 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 620 ms, distance = 0.839 mm, average velocity = 1.353 mm/sec
17-03-17 18:45:52.748 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:52.748 -07 000000475 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:45:52.758 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:52.758 -07 000000627 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:52.778 -07 000000627 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:45:52.778 -07 000000627 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:45:52.778 -07 000000627 INF: Y Motor: Moved to 61.5645 after 1657 ms (table move)
17-03-17 18:45:52.778 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178526 mm (DAC = 38999)
17-03-17 18:45:52.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.778 -07 000000486 INF: FPGA: Recv ZSGSRD 37081
17-03-17 18:45:52.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:45:52.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.788 -07 000000627 INF: FPGA: Recv ZSGSRD 37077
17-03-17 18:45:52.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.798 -07 000000475 INF: FPGA: Recv ZSGSRD 37076
17-03-17 18:45:52.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.808 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.808 -07 000000478 INF: FPGA: Recv ZSGSRD 37075
17-03-17 18:45:52.818 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.818 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.818 -07 000000486 INF: FPGA: Recv ZSGSRD 37075
17-03-17 18:45:52.828 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.828 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.828 -07 000000627 INF: FPGA: Recv ZSGSRD 37082
17-03-17 18:45:52.838 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.838 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.838 -07 000000627 INF: FPGA: Recv ZSGSRD 37082
17-03-17 18:45:52.848 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.848 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.848 -07 000000486 INF: FPGA: Recv ZSGSRD 37083
17-03-17 18:45:52.858 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.858 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.858 -07 000000486 INF: FPGA: Recv ZSGSRD 37083
17-03-17 18:45:52.868 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.868 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:52.868 -07 000000478 INF: FPGA: Recv ZSGSRD 37075
17-03-17 18:45:52.878 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.878 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:52.878 -07 000000486 INF: FPGA: Recv ZPIEZORD 33396
17-03-17 18:45:52.888 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:52.888 -07 000000415 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.951 V. Piezo Error = -8.2 V.
17-03-17 18:45:52.888 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37079 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37079 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37075 (-177.6 uncal um), Max = 37083 (-177.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:45:52.888 -07 000000415 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37079, posNoise = 4, negNoise = 4
17-03-17 18:45:52.888 -07 000000415 INF: Z Motor: After move to -0.178526, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:52.888 -07 000000415 INF: Z Motor: Settle wait time = 1656 ms, measure time = 107 ms (allowed 150 ms), total time = 1763 ms
17-03-17 18:45:52.888 -07 000000415 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:45:52.938 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2040 ms
17-03-17 18:45:52.938 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:45:52.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:52.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:52.938 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:52.938 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:52.938 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:45:52.938 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:52.938 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:45:52.938 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:45:52.948 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:45:52.948 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:45:52.948 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:45:52.948 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:45:52.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:45:52.998 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:45:53.198 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:45:53.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:45:53.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:45:53.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-17 18:45:53.238 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:45:53.238 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:45:53.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:45:53.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:45:53.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:53.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:45:53.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:45:53.338 -07 000000627 INF: Autofocus start
17-03-17 18:45:53.338 -07 000000627 INF: MeasureProfile start
17-03-17 18:45:53.338 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:53.338 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:53.348 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:53.348 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:45:53.348 -07 000000627 INF: MeasureProfile done
17-03-17 18:45:53.348 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:45:53.348 -07 000000627 INF: Autofocus finished
17-03-17 18:45:53.548 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:45:53.548 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:45:53.548 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.17852671401549. ----------
17-03-17 18:45:53.548 -07 000000610 INF: Cycle	17	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:45:53.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37514, sync = True, waitForSettling = True)
17-03-17 18:45:53.558 -07 000000610 INF: Z Motor: Moving to -0.171728 mm, started at -0.178527 mm, distance = 6.80 um
17-03-17 18:45:53.558 -07 000000610 INF: FPGA: Xmit ZDACW 37514\n [Z Motor]
17-03-17 18:45:53.558 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:45:53.568 -07 000000610 INF: FPGA: 'ZDACW 37514' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:53.568 -07 000000478 INF: FPGA: Recv ZDACR 37514
17-03-17 18:45:53.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:45:53.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.728 -07 000000415 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:45:53.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:53.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36028
17-03-17 18:45:53.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.748 -07 000000012 INF: FPGA: Recv ZSGSRD 36019
17-03-17 18:45:53.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:45:53.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.768 -07 000000608 INF: FPGA: Recv ZSGSRD 36025
17-03-17 18:45:53.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.778 -07 000000012 INF: FPGA: Recv ZSGSRD 36029
17-03-17 18:45:53.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.788 -07 000000475 INF: FPGA: Recv ZSGSRD 36026
17-03-17 18:45:53.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.798 -07 000000486 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:45:53.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.808 -07 000000415 INF: FPGA: Recv ZSGSRD 36029
17-03-17 18:45:53.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:53.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36027
17-03-17 18:45:53.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:53.828 -07 000000415 INF: FPGA: Recv ZPIEZORD 31947
17-03-17 18:45:53.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:53.838 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -9.0 V.
17-03-17 18:45:53.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36024 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36026 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36017 (-170.8 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:45:53.838 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36024, posNoise = 5, negNoise = 7
17-03-17 18:45:53.838 -07 000000610 INF: Z Motor: After move to -0.171728, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:53.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:45:53.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:53.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:53.838 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:53.838 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:53.838 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:45:53.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:45:53.838 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:45:53.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:53.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:45:53.838 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:45:53.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:45:53.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:45:53.838 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:45:53.838 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:45:53.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:45:53.838 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:45:53.848 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:45:53.848 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:45:53.848 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:45:53.848 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:45:53.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37691 150\n [Camera]
17-03-17 18:45:54.058 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:45:54.448 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:45:54.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:45:54.448 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:54.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:45:54.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:45:54.458 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:54.458 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:54.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:45:54.458 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:54.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:45:54.638 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37691 780
17-03-17 18:45:54.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:45:54.858 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:45:54.858 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:45:54.858 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:54.858 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:45:54.858 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:45:54.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:45:54.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:45:54.858 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:54.858 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:45:54.868 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:45:54.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:45:54.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:45:54.988 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:54.988 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:45:54.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:45:54.988 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:54.988 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:54.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:45:54.988 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:54.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:45:55.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:45:55.178 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:45:55.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37691 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-17 18:45:55.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:45:55.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171749170205932. ------
17-03-17 18:45:55.178 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:55.178 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17796 mm
17-03-17 18:45:55.178 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:45:55.188 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:45:55.188 -07 000000475 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:45:55.188 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:55.188 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:55.188 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:45:55.188 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38876, sync = True, waitForSettling = False)
17-03-17 18:45:55.188 -07 000000478 INF: Z Motor: Moving to -0.177963 mm, started at -0.171749 mm, distance = -6.21 um
17-03-17 18:45:55.188 -07 000000627 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:45:55.198 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:45:55.198 -07 000000475 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:55.198 -07 000000478 INF: FPGA: Xmit ZDACW 38876\n [Z Motor]
17-03-17 18:45:55.198 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:45:55.198 -07 000000475 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:45:55.198 -07 000000475 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:45:55.208 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:45:55.208 -07 000000478 INF: FPGA: 'ZDACW 38876' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:45:55.218 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:45:55.228 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:55.228 -07 000000593 INF: FPGA: Recv ZDACR 38876
17-03-17 18:45:55.238 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:45:55.238 -07 000000478 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:45:55.388 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:45:55.388 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:45:55.388 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:55.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:45:55.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:45:55.388 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:55.388 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:45:55.398 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:45:55.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:45:55.398 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:45:55.408 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:45:55.408 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 18:45:55.588 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:45:55.588 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:45:55.628 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:55.628 -07 000000627 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:45:55.638 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:55.638 -07 000000475 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:55.638 -07 000000475 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:45:55.638 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:45:55.958 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.016692,
17-03-17 18:45:56.588 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:56.588 -07 000000478 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:45:56.598 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:56.598 -07 000000475 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:56.608 -07 000000475 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:45:56.608 -07 000000475 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:45:56.608 -07 000000475 INF: Y Motor: Moved to 62.3960 after 1428 ms (table move)
17-03-17 18:45:56.618 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177963 mm (DAC = 38876)
17-03-17 18:45:56.618 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.618 -07 000000415 INF: FPGA: Recv ZSGSRD 36998
17-03-17 18:45:56.618 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:45:56.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:45:56.628 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:45:56.628 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.628 -07 000000486 INF: FPGA: Recv ZSGSRD 36985
17-03-17 18:45:56.638 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.638 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.638 -07 000000415 INF: FPGA: Recv ZSGSRD 36992
17-03-17 18:45:56.648 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.648 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.648 -07 000000475 INF: FPGA: Recv ZSGSRD 36997
17-03-17 18:45:56.658 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.658 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.658 -07 000000415 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:45:56.668 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.668 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.668 -07 000000478 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:45:56.678 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.678 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.678 -07 000000486 INF: FPGA: Recv ZSGSRD 36997
17-03-17 18:45:56.688 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:45:56.688 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.688 -07 000000486 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:45:56.698 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.698 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.698 -07 000000478 INF: FPGA: Recv ZSGSRD 36989
17-03-17 18:45:56.708 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.708 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:56.708 -07 000000475 INF: FPGA: Recv ZSGSRD 36987
17-03-17 18:45:56.718 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.718 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:56.718 -07 000000478 INF: FPGA: Recv ZPIEZORD 33249
17-03-17 18:45:56.728 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:56.728 -07 000000608 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.3 V.
17-03-17 18:45:56.728 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36992 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36993 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36985 (-177.0 uncal um), Max = 36998 (-177.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:45:56.728 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36992, posNoise = 6, negNoise = 7
17-03-17 18:45:56.728 -07 000000608 INF: Z Motor: After move to -0.177963, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:56.728 -07 000000608 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:45:56.728 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:45:56.778 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:45:56.778 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:45:56.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:56.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:56.778 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:56.778 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:56.778 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:45:56.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:56.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:45:56.778 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:45:56.788 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:45:56.788 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:45:56.788 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:45:56.788 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:45:56.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:45:56.838 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:45:57.038 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:45:57.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:45:57.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:45:57.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 18:45:57.078 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:45:57.078 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:45:57.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:45:57.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:45:57.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:57.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:45:57.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:45:57.178 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:57.178 -07 000000475 INF: Autofocus start
17-03-17 18:45:57.178 -07 000000475 INF: MeasureProfile start
17-03-17 18:45:57.178 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:57.188 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:45:57.188 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:45:57.188 -07 000000475 INF: MeasureProfile done
17-03-17 18:45:57.188 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:45:57.188 -07 000000475 INF: Autofocus finished
17-03-17 18:45:57.388 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:45:57.388 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:45:57.388 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.177967807559156. ----------
17-03-17 18:45:57.388 -07 000000610 INF: Cycle	17	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:45:57.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37390, sync = True, waitForSettling = True)
17-03-17 18:45:57.398 -07 000000610 INF: Z Motor: Moving to -0.171160 mm, started at -0.177968 mm, distance = 6.81 um
17-03-17 18:45:57.398 -07 000000610 INF: FPGA: Xmit ZDACW 37390\n [Z Motor]
17-03-17 18:45:57.398 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:45:57.408 -07 000000610 INF: FPGA: 'ZDACW 37390' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:45:57.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:57.408 -07 000000415 INF: FPGA: Recv ZDACR 37390
17-03-17 18:45:57.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:45:57.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.568 -07 000000382 INF: FPGA: Recv ZSGSRD 35938
17-03-17 18:45:57.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:45:57.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.578 -07 000000415 INF: FPGA: Recv ZSGSRD 35936
17-03-17 18:45:57.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.588 -07 000000475 INF: FPGA: Recv ZSGSRD 35929
17-03-17 18:45:57.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.598 -07 000000608 INF: FPGA: Recv ZSGSRD 35932
17-03-17 18:45:57.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.608 -07 000000608 INF: FPGA: Recv ZSGSRD 35943
17-03-17 18:45:57.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.618 -07 000000608 INF: FPGA: Recv ZSGSRD 35938
17-03-17 18:45:57.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35932
17-03-17 18:45:57.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.638 -07 000000382 INF: FPGA: Recv ZSGSRD 35934
17-03-17 18:45:57.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35936
17-03-17 18:45:57.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:45:57.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35933
17-03-17 18:45:57.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:45:57.668 -07 000000424 INF: FPGA: Recv ZPIEZORD 31864
17-03-17 18:45:57.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:45:57.678 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.0 V.
17-03-17 18:45:57.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35935 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35935 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35929 (-170.3 uncal um), Max = 35943 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:45:57.678 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35935, posNoise = 8, negNoise = 6
17-03-17 18:45:57.678 -07 000000610 INF: Z Motor: After move to -0.171160, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:45:57.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:45:57.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:45:57.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:45:57.678 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:45:57.678 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:45:57.678 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:45:57.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:45:57.678 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:45:57.678 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:45:57.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:45:57.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:45:57.678 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:45:57.678 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:45:57.688 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:45:57.688 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:45:57.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:45:57.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:45:57.698 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:45:57.698 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:45:57.698 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:45:57.698 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:45:57.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37567 150\n [Camera]
17-03-17 18:45:57.898 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:45:58.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:45:58.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:45:58.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:58.298 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:58.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) start.
17-03-17 18:45:58.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:45:58.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:45:58.298 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:58.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:58.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1062015024, 0x0, 418435064) start.
17-03-17 18:45:58.488 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37567 780
17-03-17 18:45:58.638 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:45:58.698 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:45:58.698 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:45:58.698 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:58.698 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:45:58.698 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:45:58.698 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1062015024, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:45:58.698 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:45:58.698 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:58.708 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:45:58.718 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:45:58.828 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:45:58.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:45:58.838 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:45:58.838 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:45:58.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1097437288, 0x0, 391868352) start.
17-03-17 18:45:58.838 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:45:58.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:45:58.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:45:58.838 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:45:58.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1132859552, 0x0, 418435064) start.
17-03-17 18:45:59.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:45:59.018 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:45:59.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37567 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-17 18:45:59.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:45:59.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.171177415325315. ------
17-03-17 18:45:59.028 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:45:59.028 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17780 mm
17-03-17 18:45:59.028 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:45:59.028 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:45:59.028 -07 000000478 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:45:59.028 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:45:59.038 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38840, sync = True, waitForSettling = False)
17-03-17 18:45:59.038 -07 000000618 INF: Z Motor: Moving to -0.177798 mm, started at -0.171177 mm, distance = -6.62 um
17-03-17 18:45:59.038 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:45:59.038 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:59.038 -07 000000608 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:45:59.148 -07 000000618 INF: FPGA: Xmit ZDACW 38840\n [Z Motor]
17-03-17 18:45:59.148 -07 000000478 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 18:45:59.148 -07 000000478 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:59.148 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:45:59.148 -07 000000478 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:45:59.148 -07 000000478 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:45:59.158 -07 000000618 INF: FPGA: 'ZDACW 38840' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 18:45:59.158 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:45:59.168 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:45:59.178 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:45:59.178 -07 000000627 INF: FPGA: Recv ZDACR 38840
17-03-17 18:45:59.188 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:45:59.188 -07 000000618 INF: Z Motor: MoveAbsStepped took 150 ms (did NOT wait for settling yet))
17-03-17 18:45:59.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1097437288, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:45:59.238 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:45:59.238 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:59.238 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1132859552, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:45:59.238 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:45:59.238 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:45:59.238 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:45:59.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:45:59.238 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:45:59.248 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:45:59.368 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:45:59.368 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 332 ms overall
17-03-17 18:45:59.528 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:45:59.528 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 18:45:59.568 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:45:59.568 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:45:59.578 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:45:59.578 -07 000000478 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:45:59.578 -07 000000478 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:45:59.578 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.837 mm, average velocity = 2.207 mm/sec
17-03-17 18:46:00.528 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:00.528 -07 000000475 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:46:00.538 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:00.538 -07 000000478 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:00.558 -07 000000478 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:00.558 -07 000000478 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:00.558 -07 000000478 INF: Y Motor: Moved to 63.2251 after 1521 ms (table move)
17-03-17 18:46:00.558 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177798 mm (DAC = 38840)
17-03-17 18:46:00.558 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.558 -07 000000012 INF: FPGA: Recv ZSGSRD 36973
17-03-17 18:46:00.568 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:00.568 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.568 -07 000000012 INF: FPGA: Recv ZSGSRD 36967
17-03-17 18:46:00.578 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.578 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.578 -07 000000012 INF: FPGA: Recv ZSGSRD 36958
17-03-17 18:46:00.588 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.588 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.588 -07 000000012 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:46:00.598 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.598 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.598 -07 000000012 INF: FPGA: Recv ZSGSRD 36970
17-03-17 18:46:00.608 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.608 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.608 -07 000000618 INF: FPGA: Recv ZSGSRD 36972
17-03-17 18:46:00.618 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.618 -07 000000618 INF: FPGA: Recv ZSGSRD 36976
17-03-17 18:46:00.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.628 -07 000000618 INF: FPGA: Recv ZSGSRD 36965
17-03-17 18:46:00.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.638 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36964
17-03-17 18:46:00.648 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.648 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:00.648 -07 000000012 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:46:00.658 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:00.658 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:00.658 -07 000000012 INF: FPGA: Recv ZPIEZORD 33200
17-03-17 18:46:00.668 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:00.668 -07 000000424 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.3 V.
17-03-17 18:46:00.668 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36967 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36966 (-176.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36958 (-176.9 uncal um), Max = 36976 (-177.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:46:00.668 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36967, posNoise = 9, negNoise = 9
17-03-17 18:46:00.668 -07 000000424 INF: Z Motor: After move to -0.177798, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:00.668 -07 000000424 INF: Z Motor: Settle wait time = 1523 ms, measure time = 107 ms (allowed 150 ms), total time = 1630 ms
17-03-17 18:46:00.668 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:00.718 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1683 ms
17-03-17 18:46:00.718 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:00.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:00.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:00.718 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:00.718 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:00.718 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:00.718 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:00.718 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:00.718 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:00.728 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:00.728 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:00.738 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:46:00.738 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:46:00.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:00.788 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:00.988 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:00.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:00.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:00.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:46:01.028 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:01.028 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:01.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:46:01.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:46:01.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:01.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:01.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:46:01.128 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:01.128 -07 000000475 INF: Autofocus start
17-03-17 18:46:01.128 -07 000000475 INF: MeasureProfile start
17-03-17 18:46:01.128 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:01.138 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:46:01.138 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:01.138 -07 000000475 INF: MeasureProfile done
17-03-17 18:46:01.138 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:46:01.138 -07 000000475 INF: Autofocus finished
17-03-17 18:46:01.318 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.03576,
17-03-17 18:46:01.338 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:01.338 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:01.338 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177807202255612. ----------
17-03-17 18:46:01.338 -07 000000610 INF: Cycle	17	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:01.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37355, sync = True, waitForSettling = True)
17-03-17 18:46:01.348 -07 000000610 INF: Z Motor: Moving to -0.171000 mm, started at -0.177807 mm, distance = 6.81 um
17-03-17 18:46:01.358 -07 000000610 INF: FPGA: Xmit ZDACW 37355\n [Z Motor]
17-03-17 18:46:01.358 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:46:01.368 -07 000000610 INF: FPGA: 'ZDACW 37355' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:46:01.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:01.368 -07 000000475 INF: FPGA: Recv ZDACR 37355
17-03-17 18:46:01.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:01.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.528 -07 000000475 INF: FPGA: Recv ZSGSRD 35903
17-03-17 18:46:01.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.538 -07 000000415 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:46:01.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.548 -07 000000424 INF: FPGA: Recv ZSGSRD 35908
17-03-17 18:46:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.558 -07 000000475 INF: FPGA: Recv ZSGSRD 35907
17-03-17 18:46:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.568 -07 000000415 INF: FPGA: Recv ZSGSRD 35909
17-03-17 18:46:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.578 -07 000000618 INF: FPGA: Recv ZSGSRD 35907
17-03-17 18:46:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.588 -07 000000424 INF: FPGA: Recv ZSGSRD 35912
17-03-17 18:46:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.598 -07 000000618 INF: FPGA: Recv ZSGSRD 35906
17-03-17 18:46:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.608 -07 000000475 INF: FPGA: Recv ZSGSRD 35909
17-03-17 18:46:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:01.618 -07 000000618 INF: FPGA: Recv ZSGSRD 35912
17-03-17 18:46:01.618 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:01.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:01.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:01.628 -07 000000475 INF: FPGA: Recv ZPIEZORD 31806
17-03-17 18:46:01.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:01.638 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.1 V.
17-03-17 18:46:01.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35909 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:46:01.638 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35909, posNoise = 4, negNoise = 6
17-03-17 18:46:01.638 -07 000000610 INF: Z Motor: After move to -0.171000, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:01.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 18:46:01.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:01.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:01.638 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:01.638 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:01.638 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:01.638 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:01.638 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:01.638 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:01.638 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:46:01.638 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:01.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:01.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:01.648 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:01.648 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:01.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:01.648 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:01.658 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 18:46:01.658 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:46:01.658 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:46:01.658 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:46:01.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37532 150\n [Camera]
17-03-17 18:46:01.858 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:02.258 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:02.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:02.258 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:02.258 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:02.268 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:02.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:02.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:46:02.268 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:02.268 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:02.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:46:02.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37532 780
17-03-17 18:46:02.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:02.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:46:02.648 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:46:02.648 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:02.648 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:02.648 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:46:02.648 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:46:02.648 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:46:02.648 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:02.658 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:02.658 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:46:02.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:02.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:02.788 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:02.798 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:02.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:02.798 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:02.908 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:02.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:46:02.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:02.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:46:02.978 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:46:02.978 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:02.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37532 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:46:02.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:02.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.171010385809629. ------
17-03-17 18:46:02.988 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:02.988 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17743 mm
17-03-17 18:46:02.988 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:02.988 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:02.988 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:46:02.988 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38760, sync = True, waitForSettling = False)
17-03-17 18:46:02.988 -07 000000608 INF: Z Motor: Moving to -0.177432 mm, started at -0.171010 mm, distance = -6.42 um
17-03-17 18:46:02.998 -07 000000593 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:46:02.998 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:02.998 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:46:02.998 -07 000000486 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:46:03.008 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:03.008 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:03.008 -07 000000593 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:03.008 -07 000000593 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:03.008 -07 000000593 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:46:03.018 -07 000000608 INF: FPGA: Xmit ZDACW 38760\n [Z Motor]
17-03-17 18:46:03.018 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:46:03.028 -07 000000608 INF: FPGA: 'ZDACW 38760' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:46:03.028 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:03.038 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:03.038 -07 000000429 INF: FPGA: Recv ZDACR 38760
17-03-17 18:46:03.048 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:46:03.048 -07 000000608 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:46:03.208 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:03.208 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:46:03.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:46:03.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:46:03.298 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:03.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:46:03.298 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:46:03.298 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:03.298 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:03.298 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:03.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 18:46:03.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 18:46:03.408 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:46:03.408 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 18:46:03.438 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:03.438 -07 000000618 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:46:03.448 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:03.448 -07 000000593 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:03.448 -07 000000593 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:46:03.448 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 18:46:04.398 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:04.398 -07 000000382 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:46:04.408 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:04.408 -07 000000593 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:04.418 -07 000000593 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:04.418 -07 000000593 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:04.418 -07 000000593 INF: Y Motor: Moved to 64.0576 after 1427 ms (table move)
17-03-17 18:46:04.418 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177432 mm (DAC = 38760)
17-03-17 18:46:04.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.428 -07 000000501 INF: FPGA: Recv ZSGSRD 36910
17-03-17 18:46:04.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:46:04.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.428 -07 000000486 INF: FPGA: Recv ZSGSRD 36910
17-03-17 18:46:04.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:46:04.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.438 -07 000000478 INF: FPGA: Recv ZSGSRD 36911
17-03-17 18:46:04.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.448 -07 000000486 INF: FPGA: Recv ZSGSRD 36904
17-03-17 18:46:04.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.458 -07 000000478 INF: FPGA: Recv ZSGSRD 36905
17-03-17 18:46:04.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.468 -07 000000486 INF: FPGA: Recv ZSGSRD 36906
17-03-17 18:46:04.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.478 -07 000000478 INF: FPGA: Recv ZSGSRD 36910
17-03-17 18:46:04.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.488 -07 000000486 INF: FPGA: Recv ZSGSRD 36915
17-03-17 18:46:04.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.498 -07 000000608 INF: FPGA: Recv ZSGSRD 36910
17-03-17 18:46:04.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:04.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36909
17-03-17 18:46:04.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.518 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:04.518 -07 000000415 INF: FPGA: Recv ZPIEZORD 33147
17-03-17 18:46:04.528 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:04.528 -07 000000012 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -8.3 V.
17-03-17 18:46:04.528 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36909 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36910 (-176.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36904 (-176.5 uncal um), Max = 36915 (-176.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:46:04.528 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36909, posNoise = 6, negNoise = 5
17-03-17 18:46:04.528 -07 000000012 INF: Z Motor: After move to -0.177432, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:04.528 -07 000000012 INF: Z Motor: Settle wait time = 1430 ms, measure time = 101 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:46:04.528 -07 000000012 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:04.578 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 18:46:04.578 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:04.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:04.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:04.578 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:04.578 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:04.578 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:04.578 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:04.578 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:46:04.578 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:04.588 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:04.588 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:04.588 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:46:04.588 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:46:04.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:04.638 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:04.838 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:04.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:04.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:04.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 18:46:04.878 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:04.878 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:04.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 18:46:04.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:46:04.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:04.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:04.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:46:04.978 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:04.978 -07 000000475 INF: Autofocus start
17-03-17 18:46:04.978 -07 000000475 INF: MeasureProfile start
17-03-17 18:46:04.978 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:04.988 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:04.988 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:04.988 -07 000000475 INF: MeasureProfile done
17-03-17 18:46:04.988 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:46:04.988 -07 000000475 INF: Autofocus finished
17-03-17 18:46:05.188 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:05.188 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:05.188 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.17743459795139. ----------
17-03-17 18:46:05.188 -07 000000610 INF: Cycle	17	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:05.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37257, sync = True, waitForSettling = True)
17-03-17 18:46:05.198 -07 000000610 INF: Z Motor: Moving to -0.170552 mm, started at -0.177435 mm, distance = 6.88 um
17-03-17 18:46:05.198 -07 000000610 INF: FPGA: Xmit ZDACW 37257\n [Z Motor]
17-03-17 18:46:05.198 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:46:05.208 -07 000000610 INF: FPGA: 'ZDACW 37257' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:05.208 -07 000000382 INF: FPGA: Recv ZDACR 37257
17-03-17 18:46:05.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.368 -07 000000429 INF: FPGA: Recv ZSGSRD 35836
17-03-17 18:46:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35835
17-03-17 18:46:05.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.388 -07 000000012 INF: FPGA: Recv ZSGSRD 35836
17-03-17 18:46:05.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35832
17-03-17 18:46:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.408 -07 000000424 INF: FPGA: Recv ZSGSRD 35849
17-03-17 18:46:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35842
17-03-17 18:46:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.428 -07 000000012 INF: FPGA: Recv ZSGSRD 35840
17-03-17 18:46:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.438 -07 000000424 INF: FPGA: Recv ZSGSRD 35844
17-03-17 18:46:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.448 -07 000000012 INF: FPGA: Recv ZSGSRD 35844
17-03-17 18:46:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:05.458 -07 000000012 INF: FPGA: Recv ZSGSRD 35841
17-03-17 18:46:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:05.468 -07 000000424 INF: FPGA: Recv ZPIEZORD 31681
17-03-17 18:46:05.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:05.478 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -9.2 V.
17-03-17 18:46:05.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35840 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35840 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35832 (-169.6 uncal um), Max = 35849 (-169.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:46:05.478 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35840, posNoise = 9, negNoise = 8
17-03-17 18:46:05.478 -07 000000610 INF: Z Motor: After move to -0.170552, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:05.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:46:05.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:05.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:05.478 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:05.478 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:05.478 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:05.478 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:05.478 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:05.478 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:05.478 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:05.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:05.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:05.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:05.488 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:05.488 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:05.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:05.488 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:05.498 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:46:05.498 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:46:05.498 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:46:05.498 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:46:05.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37433 150\n [Camera]
17-03-17 18:46:05.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:06.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:06.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:06.098 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:06.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:06.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:06.098 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:06.098 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:06.098 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:46:06.098 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:06.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:46:06.288 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37433 780
17-03-17 18:46:06.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:06.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:46:06.488 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:46:06.488 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:06.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:46:06.498 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:46:06.498 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:06.498 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:06.498 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:46:06.498 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:06.508 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:46:06.618 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:06.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:06.628 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:06.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:06.628 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:06.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:06.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:06.628 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:06.638 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:06.638 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:46:06.638 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:06.638 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:46:06.678 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.016692,
17-03-17 18:46:06.818 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:46:06.818 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:06.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37433 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-17 18:46:06.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:06.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170567115171848. ------
17-03-17 18:46:06.828 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:06.828 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17695 mm
17-03-17 18:46:06.828 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:06.828 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:46:06.828 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:46:06.828 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38655, sync = True, waitForSettling = False)
17-03-17 18:46:06.828 -07 000000501 INF: Z Motor: Moving to -0.176951 mm, started at -0.170567 mm, distance = -6.38 um
17-03-17 18:46:06.828 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:06.838 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:06.838 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:06.838 -07 000000478 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:46:06.848 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:46:06.848 -07 000000501 INF: FPGA: Xmit ZDACW 38655\n [Z Motor]
17-03-17 18:46:06.848 -07 000000608 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:06.848 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:46:06.848 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:06.848 -07 000000608 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:46:06.858 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:06.858 -07 000000501 INF: FPGA: 'ZDACW 38655' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:46:06.868 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:06.878 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:06.878 -07 000000475 INF: FPGA: Recv ZDACR 38655
17-03-17 18:46:06.888 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:06.888 -07 000000501 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 18:46:07.038 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:46:07.038 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:46:07.038 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:07.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:46:07.038 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:46:07.038 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:07.038 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:07.038 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:07.038 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:46:07.048 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:46:07.058 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:07.058 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:46:07.248 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:46:07.248 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall
17-03-17 18:46:07.278 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:07.278 -07 000000618 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:46:07.288 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:07.288 -07 000000608 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:07.288 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:46:07.288 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 18:46:08.238 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:08.238 -07 000000012 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:46:08.248 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:08.248 -07 000000608 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:08.268 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:08.268 -07 000000608 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:08.268 -07 000000608 INF: Y Motor: Moved to 64.8794 after 1436 ms (table move)
17-03-17 18:46:08.268 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176951 mm (DAC = 38655)
17-03-17 18:46:08.268 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.268 -07 000000608 INF: FPGA: Recv ZSGSRD 36844
17-03-17 18:46:08.278 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:08.278 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.278 -07 000000475 INF: FPGA: Recv ZSGSRD 36839
17-03-17 18:46:08.288 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.288 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.288 -07 000000475 INF: FPGA: Recv ZSGSRD 36841
17-03-17 18:46:08.298 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.298 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.298 -07 000000475 INF: FPGA: Recv ZSGSRD 36838
17-03-17 18:46:08.308 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.308 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.308 -07 000000475 INF: FPGA: Recv ZSGSRD 36838
17-03-17 18:46:08.318 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.318 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.318 -07 000000475 INF: FPGA: Recv ZSGSRD 36833
17-03-17 18:46:08.328 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.328 -07 000000475 INF: FPGA: Recv ZSGSRD 36830
17-03-17 18:46:08.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.338 -07 000000475 INF: FPGA: Recv ZSGSRD 36829
17-03-17 18:46:08.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.348 -07 000000475 INF: FPGA: Recv ZSGSRD 36830
17-03-17 18:46:08.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:08.358 -07 000000475 INF: FPGA: Recv ZSGSRD 36839
17-03-17 18:46:08.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.368 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:08.368 -07 000000480 INF: FPGA: Recv ZPIEZORD 33007
17-03-17 18:46:08.378 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:08.378 -07 000000593 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.5 V.
17-03-17 18:46:08.378 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36836 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36838 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36829 (-176.0 uncal um), Max = 36844 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:46:08.378 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36836, posNoise = 8, negNoise = 7
17-03-17 18:46:08.378 -07 000000593 INF: Z Motor: After move to -0.176951, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:08.378 -07 000000593 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:46:08.378 -07 000000593 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:08.428 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:46:08.428 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:08.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:08.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:08.428 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:08.428 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:08.428 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:08.428 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:08.428 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:46:08.428 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:08.438 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:08.438 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:08.448 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:46:08.448 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:46:08.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:08.488 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:08.688 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:08.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:08.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:08.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:46:08.728 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:08.728 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:08.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:46:08.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:46:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:08.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:46:08.928 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:08.928 -07 000000608 INF: Autofocus start
17-03-17 18:46:08.928 -07 000000608 INF: MeasureProfile start
17-03-17 18:46:08.928 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:08.938 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:46:08.938 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:08.938 -07 000000608 INF: MeasureProfile done
17-03-17 18:46:08.938 -07 000000608 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:46:08.938 -07 000000608 INF: Autofocus finished
17-03-17 18:46:09.138 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:09.138 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:09.138 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176965630465042. ----------
17-03-17 18:46:09.138 -07 000000610 INF: Cycle	17	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:09.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37205, sync = True, waitForSettling = True)
17-03-17 18:46:09.148 -07 000000610 INF: Z Motor: Moving to -0.170314 mm, started at -0.176966 mm, distance = 6.65 um
17-03-17 18:46:09.148 -07 000000610 INF: FPGA: Xmit ZDACW 37205\n [Z Motor]
17-03-17 18:46:09.148 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:46:09.158 -07 000000610 INF: FPGA: 'ZDACW 37205' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:09.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:09.158 -07 000000608 INF: FPGA: Recv ZDACR 37205
17-03-17 18:46:09.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35801
17-03-17 18:46:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.328 -07 000000593 INF: FPGA: Recv ZSGSRD 35807
17-03-17 18:46:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.338 -07 000000618 INF: FPGA: Recv ZSGSRD 35796
17-03-17 18:46:09.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.348 -07 000000593 INF: FPGA: Recv ZSGSRD 35799
17-03-17 18:46:09.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.358 -07 000000593 INF: FPGA: Recv ZSGSRD 35799
17-03-17 18:46:09.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.368 -07 000000593 INF: FPGA: Recv ZSGSRD 35801
17-03-17 18:46:09.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.378 -07 000000618 INF: FPGA: Recv ZSGSRD 35802
17-03-17 18:46:09.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.388 -07 000000593 INF: FPGA: Recv ZSGSRD 35797
17-03-17 18:46:09.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.398 -07 000000618 INF: FPGA: Recv ZSGSRD 35801
17-03-17 18:46:09.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:09.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35801
17-03-17 18:46:09.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:09.418 -07 000000618 INF: FPGA: Recv ZPIEZORD 31673
17-03-17 18:46:09.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:09.428 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.1 V.
17-03-17 18:46:09.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35800 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35801 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35796 (-169.4 uncal um), Max = 35807 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:46:09.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35800, posNoise = 7, negNoise = 4
17-03-17 18:46:09.428 -07 000000610 INF: Z Motor: After move to -0.170314, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:09.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:46:09.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:09.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:09.428 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:09.428 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:09.428 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:09.428 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:09.428 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:09.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:09.428 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:09.428 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:09.428 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:09.428 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:09.438 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:09.438 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:09.438 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:46:09.438 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:09.448 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:46:09.448 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:46:09.448 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:46:09.448 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:46:09.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37382 150\n [Camera]
17-03-17 18:46:09.648 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:10.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:10.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:10.048 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:10.048 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:10.048 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:46:10.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:10.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:10.048 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:10.048 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:10.048 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:46:10.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:46:10.428 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:46:10.428 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:10.428 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:46:10.428 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:46:10.428 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:10.428 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:10.428 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:10.428 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:46:10.438 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:46:10.448 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37382 780
17-03-17 18:46:10.448 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:10.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-17 18:46:10.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-17 18:46:10.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:46:10.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:46:10.578 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:10.578 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:10.698 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:10.698 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:46:10.708 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:10.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:46:11.078 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:46:11.078 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:46:11.078 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:11.088 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:11.088 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:46:11.088 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:46:11.088 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:11.088 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:11.088 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 18:46:11.088 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 18:46:11.108 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:46:11.108 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:11.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37382 150' command took 2 ms to send, 1651 ms to get response, and 1656 ms overall
17-03-17 18:46:11.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:11.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.170310146686177. ------
17-03-17 18:46:11.108 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:11.108 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17687 mm
17-03-17 18:46:11.108 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:11.108 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:46:11.108 -07 000000593 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:46:11.108 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:11.118 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38637, sync = True, waitForSettling = False)
17-03-17 18:46:11.118 -07 000000012 INF: Z Motor: Moving to -0.176869 mm, started at -0.170310 mm, distance = -6.56 um
17-03-17 18:46:11.118 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:46:11.118 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:11.118 -07 000000415 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:46:11.128 -07 000000593 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:46:11.128 -07 000000593 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:11.128 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:11.128 -07 000000593 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:11.128 -07 000000593 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:46:11.138 -07 000000012 INF: FPGA: Xmit ZDACW 38637\n [Z Motor]
17-03-17 18:46:11.138 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:46:11.148 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:11.148 -07 000000012 INF: FPGA: 'ZDACW 38637' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:46:11.158 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:11.158 -07 000000627 INF: FPGA: Recv ZDACR 38637
17-03-17 18:46:11.168 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:46:11.168 -07 000000012 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:46:11.328 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:11.328 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 18:46:11.518 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:46:11.518 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:46:11.558 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:11.558 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:46:11.568 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:11.568 -07 000000593 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:11.568 -07 000000593 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:46:11.568 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 18:46:11.618 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:11.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:12.038 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.038479,
17-03-17 18:46:12.518 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:12.518 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:46:12.528 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.528 -07 000000593 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:12.548 -07 000000593 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:12.548 -07 000000593 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:12.548 -07 000000593 INF: Y Motor: Moved to 65.7148 after 1432 ms (table move)
17-03-17 18:46:12.548 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176869 mm (DAC = 38637)
17-03-17 18:46:12.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.548 -07 000000593 INF: FPGA: Recv ZSGSRD 36825
17-03-17 18:46:12.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:46:12.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.558 -07 000000012 INF: FPGA: Recv ZSGSRD 36818
17-03-17 18:46:12.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.568 -07 000000382 INF: FPGA: Recv ZSGSRD 36820
17-03-17 18:46:12.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.578 -07 000000012 INF: FPGA: Recv ZSGSRD 36818
17-03-17 18:46:12.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.588 -07 000000382 INF: FPGA: Recv ZSGSRD 36822
17-03-17 18:46:12.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.598 -07 000000429 INF: FPGA: Recv ZSGSRD 36823
17-03-17 18:46:12.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.608 -07 000000415 INF: FPGA: Recv ZSGSRD 36828
17-03-17 18:46:12.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.618 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.618 -07 000000486 INF: FPGA: Recv ZSGSRD 36821
17-03-17 18:46:12.628 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.628 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.628 -07 000000382 INF: FPGA: Recv ZSGSRD 36814
17-03-17 18:46:12.638 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.638 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:12.638 -07 000000429 INF: FPGA: Recv ZSGSRD 36827
17-03-17 18:46:12.648 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.648 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:12.648 -07 000000627 INF: FPGA: Recv ZPIEZORD 33067
17-03-17 18:46:12.658 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:12.658 -07 000000618 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.896 V. Piezo Error = -8.3 V.
17-03-17 18:46:12.658 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36822 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36822 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36814 (-175.9 uncal um), Max = 36828 (-176.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:46:12.658 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36822, posNoise = 6, negNoise = 8
17-03-17 18:46:12.658 -07 000000618 INF: Z Motor: After move to -0.176869, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:12.658 -07 000000618 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:46:12.658 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:12.708 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 18:46:12.708 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:12.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:12.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:12.708 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:12.708 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:12.708 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:12.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:12.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:46:12.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:12.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:12.718 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:12.728 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:46:12.728 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:46:12.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:12.768 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:12.978 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:46:12.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:46:12.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:12.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 18:46:13.008 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:13.008 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:13.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:46:13.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:46:13.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:13.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:13.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:46:13.108 -07 000000593 INF: Autofocus start
17-03-17 18:46:13.108 -07 000000593 INF: MeasureProfile start
17-03-17 18:46:13.108 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:13.108 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:13.118 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:13.118 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:13.118 -07 000000593 INF: MeasureProfile done
17-03-17 18:46:13.118 -07 000000593 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:46:13.118 -07 000000593 INF: Autofocus finished
17-03-17 18:46:13.748 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:13.748 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 620 ms to get response, and 630 ms overall
17-03-17 18:46:13.748 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176875691495057. ----------
17-03-17 18:46:13.748 -07 000000610 INF: Cycle	17	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:13.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37152, sync = True, waitForSettling = True)
17-03-17 18:46:13.748 -07 000000610 INF: Z Motor: Moving to -0.170071 mm, started at -0.176876 mm, distance = 6.80 um
17-03-17 18:46:13.768 -07 000000610 INF: FPGA: Xmit ZDACW 37152\n [Z Motor]
17-03-17 18:46:13.768 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:46:13.778 -07 000000610 INF: FPGA: 'ZDACW 37152' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:46:13.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:13.778 -07 000000627 INF: FPGA: Recv ZDACR 37152
17-03-17 18:46:13.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:13.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:13.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:13.938 -07 000000415 INF: FPGA: Recv ZSGSRD 35767
17-03-17 18:46:13.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:13.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:13.948 -07 000000593 INF: FPGA: Recv ZSGSRD 35763
17-03-17 18:46:13.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:13.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:13.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35762
17-03-17 18:46:13.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:13.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:13.968 -07 000000480 INF: FPGA: Recv ZSGSRD 35764
17-03-17 18:46:13.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:13.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:13.978 -07 000000415 INF: FPGA: Recv ZSGSRD 35764
17-03-17 18:46:13.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:13.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:13.988 -07 000000593 INF: FPGA: Recv ZSGSRD 35770
17-03-17 18:46:13.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:13.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:13.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35759
17-03-17 18:46:14.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:14.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:14.008 -07 000000627 INF: FPGA: Recv ZSGSRD 35762
17-03-17 18:46:14.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:14.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:14.018 -07 000000486 INF: FPGA: Recv ZSGSRD 35764
17-03-17 18:46:14.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:14.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:14.028 -07 000000480 INF: FPGA: Recv ZSGSRD 35763
17-03-17 18:46:14.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:14.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:14.038 -07 000000480 INF: FPGA: Recv ZPIEZORD 31626
17-03-17 18:46:14.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:14.048 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.1 V.
17-03-17 18:46:14.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35764 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35764 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35759 (-169.2 uncal um), Max = 35770 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:46:14.048 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35764, posNoise = 6, negNoise = 5
17-03-17 18:46:14.048 -07 000000610 INF: Z Motor: After move to -0.170071, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:14.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 292 ms)
17-03-17 18:46:14.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:14.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:14.048 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:14.048 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:14.048 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:14.048 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:14.048 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:14.048 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:14.048 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:14.048 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:14.048 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:14.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:14.058 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:14.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:14.058 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:46:14.058 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:14.068 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:46:14.068 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:46:14.068 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:46:14.068 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:46:14.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37329 150\n [Camera]
17-03-17 18:46:14.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:46:14.668 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:14.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:14.668 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:14.678 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:14.678 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-17 18:46:14.678 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:14.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:14.678 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:14.678 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:14.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-17 18:46:14.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37329 780
17-03-17 18:46:15.008 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:15.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:46:15.068 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:46:15.068 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:15.078 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:15.078 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:46:15.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:46:15.078 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:46:15.078 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:15.078 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:15.088 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:46:15.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:15.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:15.198 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:15.308 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:15.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:15.308 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:15.318 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:15.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:46:15.318 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:15.318 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) start.
17-03-17 18:46:15.388 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:46:15.398 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:15.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37329 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:46:15.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:15.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.170078875049074. ------
17-03-17 18:46:15.398 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:15.398 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17642 mm
17-03-17 18:46:15.398 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:15.398 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:46:15.398 -07 000000593 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:46:15.398 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:15.408 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:46:15.408 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:15.408 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38538, sync = True, waitForSettling = False)
17-03-17 18:46:15.408 -07 000000480 INF: Z Motor: Moving to -0.176416 mm, started at -0.170079 mm, distance = -6.34 um
17-03-17 18:46:15.408 -07 000000424 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:46:15.418 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:15.418 -07 000000593 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:15.418 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:15.418 -07 000000593 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:15.418 -07 000000593 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:46:15.428 -07 000000480 INF: FPGA: Xmit ZDACW 38538\n [Z Motor]
17-03-17 18:46:15.428 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:46:15.438 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:15.438 -07 000000480 INF: FPGA: 'ZDACW 38538' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:15.448 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:15.448 -07 000000424 INF: FPGA: Recv ZDACR 38538
17-03-17 18:46:15.458 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:46:15.458 -07 000000480 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:46:15.618 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:15.618 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 18:46:15.718 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:46:15.718 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:46:15.718 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:15.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:46:15.718 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:46:15.718 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:15.718 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:15.728 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:15.728 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 18:46:15.728 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:46:15.808 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:46:15.808 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:46:15.848 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:15.848 -07 000000486 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:46:15.858 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:15.858 -07 000000593 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:15.858 -07 000000593 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:46:15.858 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-17 18:46:16.618 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:16.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:16.808 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:16.808 -07 000000429 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:46:16.818 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:16.818 -07 000000593 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:16.838 -07 000000593 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:16.838 -07 000000593 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:46:16.838 -07 000000593 INF: Y Motor: Moved to 66.5400 after 1431 ms (table move)
17-03-17 18:46:16.838 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176416 mm (DAC = 38538)
17-03-17 18:46:16.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.838 -07 000000593 INF: FPGA: Recv ZSGSRD 36753
17-03-17 18:46:16.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:46:16.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.848 -07 000000593 INF: FPGA: Recv ZSGSRD 36744
17-03-17 18:46:16.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.858 -07 000000424 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:46:16.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.868 -07 000000486 INF: FPGA: Recv ZSGSRD 36753
17-03-17 18:46:16.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.878 -07 000000415 INF: FPGA: Recv ZSGSRD 36758
17-03-17 18:46:16.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.888 -07 000000415 INF: FPGA: Recv ZSGSRD 36748
17-03-17 18:46:16.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.898 -07 000000012 INF: FPGA: Recv ZSGSRD 36742
17-03-17 18:46:16.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.908 -07 000000424 INF: FPGA: Recv ZSGSRD 36747
17-03-17 18:46:16.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.918 -07 000000486 INF: FPGA: Recv ZSGSRD 36750
17-03-17 18:46:16.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:16.928 -07 000000480 INF: FPGA: Recv ZSGSRD 36742
17-03-17 18:46:16.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.938 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:16.938 -07 000000486 INF: FPGA: Recv ZPIEZORD 32943
17-03-17 18:46:16.948 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:16.948 -07 000000382 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.4 V.
17-03-17 18:46:16.948 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36749 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36749 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36742 (-175.5 uncal um), Max = 36758 (-175.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:46:16.948 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36749, posNoise = 9, negNoise = 7
17-03-17 18:46:16.948 -07 000000382 INF: Z Motor: After move to -0.176416, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:16.948 -07 000000382 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:46:16.948 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:16.998 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:46:16.998 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:16.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:16.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:17.008 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:17.008 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:17.008 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:17.008 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:17.008 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:17.008 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:17.008 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:17.008 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:17.018 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:46:17.018 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:46:17.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:17.068 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:17.268 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:17.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:17.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:17.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) start.
17-03-17 18:46:17.298 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:17.308 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:17.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:46:17.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 18:46:17.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:17.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:46:17.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:46:17.398 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.004458,
17-03-17 18:46:17.408 -07 000000429 INF: Autofocus start
17-03-17 18:46:17.408 -07 000000429 INF: MeasureProfile start
17-03-17 18:46:17.428 -07 000000429 INF: MeasureProfile done
17-03-17 18:46:17.428 -07 000000429 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:46:17.428 -07 000000429 INF: Autofocus finished
17-03-17 18:46:17.438 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:17.438 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:17.448 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:46:17.448 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:17.648 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:17.648 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 18:46:17.648 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.176406724008708. ----------
17-03-17 18:46:17.658 -07 000000610 INF: Cycle	17	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:17.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37035, sync = True, waitForSettling = True)
17-03-17 18:46:17.658 -07 000000610 INF: Z Motor: Moving to -0.169535 mm, started at -0.176407 mm, distance = 6.87 um
17-03-17 18:46:17.658 -07 000000610 INF: FPGA: Xmit ZDACW 37035\n [Z Motor]
17-03-17 18:46:17.658 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:46:17.668 -07 000000610 INF: FPGA: 'ZDACW 37035' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:46:17.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:17.668 -07 000000480 INF: FPGA: Recv ZDACR 37035
17-03-17 18:46:17.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:17.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.828 -07 000000501 INF: FPGA: Recv ZSGSRD 35677
17-03-17 18:46:17.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:17.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.838 -07 000000012 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:46:17.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.848 -07 000000424 INF: FPGA: Recv ZSGSRD 35683
17-03-17 18:46:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.858 -07 000000415 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:46:17.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.868 -07 000000415 INF: FPGA: Recv ZSGSRD 35676
17-03-17 18:46:17.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.878 -07 000000415 INF: FPGA: Recv ZSGSRD 35676
17-03-17 18:46:17.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.888 -07 000000486 INF: FPGA: Recv ZSGSRD 35683
17-03-17 18:46:17.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.898 -07 000000012 INF: FPGA: Recv ZSGSRD 35683
17-03-17 18:46:17.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.908 -07 000000012 INF: FPGA: Recv ZSGSRD 35683
17-03-17 18:46:17.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:17.918 -07 000000593 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:46:17.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:17.928 -07 000000475 INF: FPGA: Recv ZPIEZORD 31501
17-03-17 18:46:17.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:17.938 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.2 V.
17-03-17 18:46:17.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35676 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35683 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:46:17.938 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 5, negNoise = 4
17-03-17 18:46:17.938 -07 000000610 INF: Z Motor: After move to -0.169535, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:17.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:46:17.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:17.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:17.938 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:17.938 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:17.938 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:17.938 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:17.938 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:17.938 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:17.938 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:17.938 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:17.938 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:17.938 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:17.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:17.948 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:17.948 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:46:17.948 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:17.958 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:46:17.958 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:46:17.958 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:46:17.958 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:46:17.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37212 150\n [Camera]
17-03-17 18:46:18.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:18.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:18.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:18.558 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:18.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:18.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:18.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:18.558 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:18.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:46:18.568 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:18.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:46:18.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37212 780
17-03-17 18:46:18.898 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:18.938 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:46:18.938 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:46:18.938 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:18.948 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:18.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:46:18.948 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:46:18.948 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:18.948 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:18.948 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:46:18.958 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:46:19.088 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:19.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:19.088 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:19.198 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:19.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:19.198 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:19.208 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:19.208 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:46:19.208 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:19.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:46:19.278 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:46:19.288 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:19.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37212 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:46:19.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:19.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.169526392804882. ------
17-03-17 18:46:19.288 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:19.288 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17641 mm
17-03-17 18:46:19.288 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:19.288 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:19.288 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38537, sync = True, waitForSettling = False)
17-03-17 18:46:19.288 -07 000000429 INF: Z Motor: Moving to -0.176411 mm, started at -0.169526 mm, distance = -6.88 um
17-03-17 18:46:19.288 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:46:19.288 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:46:19.298 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:46:19.298 -07 000000429 INF: FPGA: Xmit ZDACW 38537\n [Z Motor]
17-03-17 18:46:19.298 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:46:19.308 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:19.308 -07 000000429 INF: FPGA: 'ZDACW 38537' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:46:19.308 -07 000000415 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:46:19.318 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:19.318 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:46:19.318 -07 000000424 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:19.318 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:19.318 -07 000000424 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:46:19.328 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:19.328 -07 000000415 INF: FPGA: Recv ZDACR 38537
17-03-17 18:46:19.338 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:19.338 -07 000000429 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:46:19.338 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:19.518 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:19.518 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:46:19.598 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:46:19.598 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:46:19.598 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:19.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:46:19.608 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:46:19.608 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:19.608 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:19.608 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:19.608 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 18:46:19.618 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:46:19.708 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:46:19.708 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:46:19.748 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:19.748 -07 000000486 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:46:19.758 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:19.758 -07 000000424 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:19.758 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:46:19.758 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.128 mm/sec
17-03-17 18:46:20.708 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:20.708 -07 000000486 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:46:20.718 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:20.718 -07 000000424 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:20.738 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:20.738 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:46:20.738 -07 000000424 INF: Y Motor: Moved to 67.3730 after 1441 ms (table move)
17-03-17 18:46:20.738 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176411 mm (DAC = 38537)
17-03-17 18:46:20.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.738 -07 000000480 INF: FPGA: Recv ZSGSRD 36754
17-03-17 18:46:20.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:20.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.748 -07 000000475 INF: FPGA: Recv ZSGSRD 36749
17-03-17 18:46:20.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:20.758 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.758 -07 000000486 INF: FPGA: Recv ZSGSRD 36742
17-03-17 18:46:20.768 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.768 -07 000000429 INF: FPGA: Recv ZSGSRD 36750
17-03-17 18:46:20.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.778 -07 000000486 INF: FPGA: Recv ZSGSRD 36745
17-03-17 18:46:20.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.788 -07 000000429 INF: FPGA: Recv ZSGSRD 36758
17-03-17 18:46:20.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.798 -07 000000475 INF: FPGA: Recv ZSGSRD 36749
17-03-17 18:46:20.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.808 -07 000000429 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:46:20.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.818 -07 000000486 INF: FPGA: Recv ZSGSRD 36738
17-03-17 18:46:20.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:20.828 -07 000000429 INF: FPGA: Recv ZSGSRD 36751
17-03-17 18:46:20.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.838 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:20.838 -07 000000415 INF: FPGA: Recv ZPIEZORD 33014
17-03-17 18:46:20.848 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:20.848 -07 000000501 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.3 V.
17-03-17 18:46:20.848 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36749 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36750 (-175.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36738 (-175.4 uncal um), Max = 36758 (-175.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:46:20.848 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36749, posNoise = 9, negNoise = 11
17-03-17 18:46:20.848 -07 000000501 INF: Z Motor: After move to -0.176411, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:20.848 -07 000000501 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:46:20.848 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:20.898 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:46:20.898 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:20.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:20.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:20.898 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:20.898 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:20.898 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:20.898 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:20.898 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:20.898 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:20.908 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:20.908 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:20.918 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:46:20.918 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:46:20.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:20.958 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:21.158 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:21.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:21.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:21.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:46:21.198 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:21.198 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:21.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:46:21.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:46:21.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:21.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:46:21.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:46:21.298 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:21.298 -07 000000501 INF: Autofocus start
17-03-17 18:46:21.298 -07 000000501 INF: MeasureProfile start
17-03-17 18:46:21.298 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:21.308 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:46:21.308 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:21.318 -07 000000501 INF: MeasureProfile done
17-03-17 18:46:21.318 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:46:21.318 -07 000000501 INF: Autofocus finished
17-03-17 18:46:21.508 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:21.508 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:21.508 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.176406724008708. ----------
17-03-17 18:46:21.508 -07 000000610 INF: Cycle	17	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:21.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37034, sync = True, waitForSettling = True)
17-03-17 18:46:21.518 -07 000000610 INF: Z Motor: Moving to -0.169531 mm, started at -0.176407 mm, distance = 6.88 um
17-03-17 18:46:21.518 -07 000000610 INF: FPGA: Xmit ZDACW 37034\n [Z Motor]
17-03-17 18:46:21.518 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:46:21.528 -07 000000610 INF: FPGA: 'ZDACW 37034' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:21.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:21.528 -07 000000429 INF: FPGA: Recv ZDACR 37034
17-03-17 18:46:21.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:21.618 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:21.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.688 -07 000000475 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:46:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:21.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:46:21.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.708 -07 000000475 INF: FPGA: Recv ZSGSRD 35685
17-03-17 18:46:21.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.718 -07 000000486 INF: FPGA: Recv ZSGSRD 35679
17-03-17 18:46:21.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:46:21.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.738 -07 000000424 INF: FPGA: Recv ZSGSRD 35682
17-03-17 18:46:21.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.748 -07 000000415 INF: FPGA: Recv ZSGSRD 35681
17-03-17 18:46:21.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.758 -07 000000486 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:46:21.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.768 -07 000000424 INF: FPGA: Recv ZSGSRD 35677
17-03-17 18:46:21.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:21.778 -07 000000486 INF: FPGA: Recv ZSGSRD 35678
17-03-17 18:46:21.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:21.788 -07 000000429 INF: FPGA: Recv ZPIEZORD 31562
17-03-17 18:46:21.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:21.798 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.1 V.
17-03-17 18:46:21.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35680 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:46:21.798 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35680, posNoise = 5, negNoise = 6
17-03-17 18:46:21.798 -07 000000610 INF: Z Motor: After move to -0.169531, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:21.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:46:21.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:21.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:21.808 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:21.808 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:21.808 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:21.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:21.808 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:21.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:21.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:21.808 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:21.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:21.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:21.818 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:21.818 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:21.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:46:21.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:21.828 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:46:21.828 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:46:21.828 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:46:21.828 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:46:21.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37211 150\n [Camera]
17-03-17 18:46:22.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:22.428 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:22.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:22.428 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:22.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:22.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:22.438 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:22.438 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:22.438 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:46:22.438 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:22.438 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:46:22.628 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37211 780
17-03-17 18:46:22.758 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.986717,
17-03-17 18:46:22.858 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 419 ms.
17-03-17 18:46:22.858 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 422 ms.
17-03-17 18:46:22.858 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 18:46:22.858 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:22.858 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 423 ms.
17-03-17 18:46:22.858 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:22.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 18:46:22.868 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:46:22.868 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 435 ms.
17-03-17 18:46:22.868 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:46:22.878 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 442 ms.
17-03-17 18:46:22.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:22.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:22.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:22.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:22.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:22.968 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:22.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:22.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:46:22.978 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:22.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:46:23.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:46:23.158 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:23.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37211 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-17 18:46:23.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:23.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.169539241229166. ------
17-03-17 18:46:23.158 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:23.158 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17533 mm
17-03-17 18:46:23.158 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:23.168 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:23.168 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:46:23.168 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:23.168 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:46:23.168 -07 000000478 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 18:46:23.168 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38300, sync = True, waitForSettling = False)
17-03-17 18:46:23.168 -07 000000382 INF: Z Motor: Moving to -0.175326 mm, started at -0.169539 mm, distance = -5.79 um
17-03-17 18:46:23.178 -07 000000382 INF: FPGA: Xmit ZDACW 38300\n [Z Motor]
17-03-17 18:46:23.178 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:46:23.188 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:23.188 -07 000000382 INF: FPGA: 'ZDACW 38300' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:46:23.188 -07 000000476 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:46:23.198 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:46:23.198 -07 000000478 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:23.198 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:23.198 -07 000000478 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:23.198 -07 000000478 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:46:23.198 -07 000000012 INF: FPGA: Recv ZDACR 38300
17-03-17 18:46:23.208 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:46:23.208 -07 000000382 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:46:23.208 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:23.368 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:23.368 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:46:23.378 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:46:23.378 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:46:23.378 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:23.378 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:46:23.378 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:46:23.378 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:23.378 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:23.378 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:46:23.378 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:23.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 18:46:23.578 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:46:23.578 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:46:23.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:23.618 -07 000000608 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:46:23.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:23.628 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:23.628 -07 000000478 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:46:23.628 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-17 18:46:24.578 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:24.578 -07 000000476 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:46:24.588 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.588 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:24.598 -07 000000478 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:24.598 -07 000000478 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:24.598 -07 000000478 INF: Y Motor: Moved to 68.2056 after 1435 ms (table move)
17-03-17 18:46:24.608 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175326 mm (DAC = 38300)
17-03-17 18:46:24.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36586
17-03-17 18:46:24.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:46:24.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36581
17-03-17 18:46:24.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.638 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36585
17-03-17 18:46:24.648 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.648 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.648 -07 000000618 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:46:24.658 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.658 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.658 -07 000000478 INF: FPGA: Recv ZSGSRD 36580
17-03-17 18:46:24.668 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.668 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.668 -07 000000486 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:46:24.678 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.678 -07 000000627 INF: FPGA: Recv ZSGSRD 36587
17-03-17 18:46:24.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.688 -07 000000382 INF: FPGA: Recv ZSGSRD 36583
17-03-17 18:46:24.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.698 -07 000000618 INF: FPGA: Recv ZSGSRD 36586
17-03-17 18:46:24.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:24.708 -07 000000478 INF: FPGA: Recv ZSGSRD 36590
17-03-17 18:46:24.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.718 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:24.718 -07 000000486 INF: FPGA: Recv ZPIEZORD 32743
17-03-17 18:46:24.728 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:24.728 -07 000000424 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.5 V.
17-03-17 18:46:24.728 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36585 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36584 (-174.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36580 (-174.4 uncal um), Max = 36590 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:46:24.728 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36585, posNoise = 5, negNoise = 5
17-03-17 18:46:24.728 -07 000000424 INF: Z Motor: After move to -0.175326, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:24.728 -07 000000424 INF: Z Motor: Settle wait time = 1439 ms, measure time = 116 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:46:24.728 -07 000000424 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:24.768 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:46:24.768 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:24.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:24.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:24.768 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:24.768 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:24.768 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:24.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:24.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:24.768 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:24.778 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:24.778 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:24.788 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:46:24.788 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:46:24.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:24.838 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:25.038 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:25.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:25.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:25.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:46:25.078 -07 000000608 INF: FPGA: Recv @CAMSNAP 282
17-03-17 18:46:25.078 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:25.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 287 ms to get response, and 290 ms overall
17-03-17 18:46:25.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:46:25.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:25.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:25.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:46:25.178 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:25.178 -07 000000569 INF: Autofocus start
17-03-17 18:46:25.178 -07 000000569 INF: MeasureProfile start
17-03-17 18:46:25.178 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:25.188 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:46:25.188 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:25.188 -07 000000569 INF: MeasureProfile done
17-03-17 18:46:25.188 -07 000000569 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:46:25.188 -07 000000569 INF: Autofocus finished
17-03-17 18:46:25.388 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:25.388 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:25.388 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.17535315321746. ----------
17-03-17 18:46:25.388 -07 000000610 INF: Cycle	17	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:25.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36851, sync = True, waitForSettling = True)
17-03-17 18:46:25.398 -07 000000610 INF: Z Motor: Moving to -0.168693 mm, started at -0.175353 mm, distance = 6.66 um
17-03-17 18:46:25.398 -07 000000610 INF: FPGA: Xmit ZDACW 36851\n [Z Motor]
17-03-17 18:46:25.398 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:46:25.408 -07 000000610 INF: FPGA: 'ZDACW 36851' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:46:25.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:25.408 -07 000000608 INF: FPGA: Recv ZDACR 36851
17-03-17 18:46:25.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:25.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.568 -07 000000608 INF: FPGA: Recv ZSGSRD 35551
17-03-17 18:46:25.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:25.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35549
17-03-17 18:46:25.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35545
17-03-17 18:46:25.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.598 -07 000000476 INF: FPGA: Recv ZSGSRD 35549
17-03-17 18:46:25.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.608 -07 000000476 INF: FPGA: Recv ZSGSRD 35550
17-03-17 18:46:25.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.618 -07 000000475 INF: FPGA: Recv ZSGSRD 35550
17-03-17 18:46:25.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.628 -07 000000475 INF: FPGA: Recv ZSGSRD 35551
17-03-17 18:46:25.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.638 -07 000000569 INF: FPGA: Recv ZSGSRD 35545
17-03-17 18:46:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.648 -07 000000475 INF: FPGA: Recv ZSGSRD 35553
17-03-17 18:46:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:25.658 -07 000000569 INF: FPGA: Recv ZSGSRD 35550
17-03-17 18:46:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:25.668 -07 000000569 INF: FPGA: Recv ZPIEZORD 31377
17-03-17 18:46:25.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:25.678 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.2 V.
17-03-17 18:46:25.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35549 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35550 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35545 (-167.8 uncal um), Max = 35553 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:46:25.678 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35549, posNoise = 4, negNoise = 4
17-03-17 18:46:25.678 -07 000000610 INF: Z Motor: After move to -0.168693, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:25.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:46:25.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:25.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:25.678 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:25.678 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:25.678 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:25.678 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:25.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:25.678 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:25.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:25.678 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:25.678 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:25.678 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:25.688 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:46:25.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:25.688 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:25.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:25.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:46:25.698 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:46:25.698 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:46:25.698 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:46:25.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37028 150\n [Camera]
17-03-17 18:46:25.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:26.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:26.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:26.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:26.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:26.298 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:26.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:26.308 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:26.308 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) start.
17-03-17 18:46:26.308 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:26.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:46:26.488 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37028 780
17-03-17 18:46:26.618 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:26.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:26.638 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:26.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:46:26.678 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:46:26.678 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:26.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:26.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:46:26.678 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:46:26.678 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:26.688 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:26.688 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:46:26.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:46:26.828 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:26.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:26.828 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:26.828 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:26.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:46:26.828 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:26.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:26.828 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:26.828 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:26.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:46:27.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:46:27.018 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:27.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37028 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-17 18:46:27.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:27.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168697669438595. ------
17-03-17 18:46:27.028 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:27.028 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17536 mm
17-03-17 18:46:27.028 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:27.028 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:46:27.028 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:46:27.028 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38308, sync = True, waitForSettling = False)
17-03-17 18:46:27.028 -07 000000627 INF: Z Motor: Moving to -0.175363 mm, started at -0.168698 mm, distance = -6.67 um
17-03-17 18:46:27.028 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:27.038 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:46:27.038 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:27.038 -07 000000424 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:46:27.048 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:46:27.048 -07 000000608 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:27.048 -07 000000627 INF: FPGA: Xmit ZDACW 38308\n [Z Motor]
17-03-17 18:46:27.048 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:46:27.048 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:27.048 -07 000000608 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:46:27.058 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:27.058 -07 000000627 INF: FPGA: 'ZDACW 38308' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:46:27.068 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:27.078 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:27.078 -07 000000462 INF: FPGA: Recv ZDACR 38308
17-03-17 18:46:27.088 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:27.088 -07 000000627 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:46:27.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:46:27.228 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:46:27.228 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:27.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:46:27.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:46:27.228 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:27.238 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:27.238 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:46:27.238 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:46:27.238 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:46:27.258 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:27.258 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 228 ms overall
17-03-17 18:46:27.438 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:46:27.438 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:46:27.478 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:27.478 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:46:27.488 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:27.488 -07 000000608 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:27.488 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:46:27.488 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 18:46:28.218 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.005817,
17-03-17 18:46:28.438 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:28.438 -07 000000476 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:46:28.448 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.448 -07 000000608 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:28.468 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:28.468 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:28.468 -07 000000608 INF: Y Motor: Moved to 69.0278 after 1435 ms (table move)
17-03-17 18:46:28.468 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175363 mm (DAC = 38308)
17-03-17 18:46:28.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.468 -07 000000608 INF: FPGA: Recv ZSGSRD 36591
17-03-17 18:46:28.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:46:28.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:46:28.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36591
17-03-17 18:46:28.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.498 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.498 -07 000000415 INF: FPGA: Recv ZSGSRD 36592
17-03-17 18:46:28.508 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.508 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.508 -07 000000415 INF: FPGA: Recv ZSGSRD 36590
17-03-17 18:46:28.518 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.518 -07 000000415 INF: FPGA: Recv ZSGSRD 36587
17-03-17 18:46:28.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:46:28.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.538 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.538 -07 000000608 INF: FPGA: Recv ZSGSRD 36589
17-03-17 18:46:28.548 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.548 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.548 -07 000000627 INF: FPGA: Recv ZSGSRD 36589
17-03-17 18:46:28.558 -07 000000475 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.558 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:28.558 -07 000000627 INF: FPGA: Recv ZSGSRD 36585
17-03-17 18:46:28.568 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.568 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:28.568 -07 000000382 INF: FPGA: Recv ZPIEZORD 32794
17-03-17 18:46:28.578 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:28.578 -07 000000475 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.845 V. Piezo Error = -8.4 V.
17-03-17 18:46:28.578 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36588 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36589 (-174.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36584 (-174.5 uncal um), Max = 36592 (-174.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:46:28.578 -07 000000475 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36588, posNoise = 4, negNoise = 4
17-03-17 18:46:28.578 -07 000000475 INF: Z Motor: After move to -0.175363, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:28.578 -07 000000475 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:46:28.578 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:28.628 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:46:28.628 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:28.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:28.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:28.628 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:28.628 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:28.628 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:28.628 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:28.628 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:28.628 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:28.638 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:28.638 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:28.648 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:46:28.648 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:46:28.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:28.698 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:28.898 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:28.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:28.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:28.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 18:46:28.938 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:28.938 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:28.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 18:46:29.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:46:29.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:29.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:46:29.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:46:29.038 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:29.038 -07 000000475 INF: Autofocus start
17-03-17 18:46:29.038 -07 000000475 INF: MeasureProfile start
17-03-17 18:46:29.038 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:29.048 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:29.048 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:29.058 -07 000000475 INF: MeasureProfile done
17-03-17 18:46:29.058 -07 000000475 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:46:29.058 -07 000000475 INF: Autofocus finished
17-03-17 18:46:29.248 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:29.248 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:29.248 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175372425853885. ----------
17-03-17 18:46:29.248 -07 000000610 INF: Cycle	17	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:29.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36788, sync = True, waitForSettling = True)
17-03-17 18:46:29.258 -07 000000610 INF: Z Motor: Moving to -0.168405 mm, started at -0.175372 mm, distance = 6.97 um
17-03-17 18:46:29.258 -07 000000610 INF: FPGA: Xmit ZDACW 36788\n [Z Motor]
17-03-17 18:46:29.258 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:46:29.268 -07 000000610 INF: FPGA: 'ZDACW 36788' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:29.268 -07 000000569 INF: FPGA: Recv ZDACR 36788
17-03-17 18:46:29.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.428 -07 000000593 INF: FPGA: Recv ZSGSRD 35506
17-03-17 18:46:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.438 -07 000000593 INF: FPGA: Recv ZSGSRD 35504
17-03-17 18:46:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.448 -07 000000593 INF: FPGA: Recv ZSGSRD 35509
17-03-17 18:46:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.458 -07 000000593 INF: FPGA: Recv ZSGSRD 35502
17-03-17 18:46:29.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35499
17-03-17 18:46:29.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35507
17-03-17 18:46:29.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.488 -07 000000382 INF: FPGA: Recv ZSGSRD 35508
17-03-17 18:46:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.498 -07 000000382 INF: FPGA: Recv ZSGSRD 35514
17-03-17 18:46:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.508 -07 000000382 INF: FPGA: Recv ZSGSRD 35505
17-03-17 18:46:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:29.518 -07 000000415 INF: FPGA: Recv ZSGSRD 35505
17-03-17 18:46:29.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:29.528 -07 000000462 INF: FPGA: Recv ZPIEZORD 31327
17-03-17 18:46:29.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:29.538 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.2 V.
17-03-17 18:46:29.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35506 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35506 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35499 (-167.5 uncal um), Max = 35514 (-167.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:46:29.538 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35506, posNoise = 8, negNoise = 7
17-03-17 18:46:29.538 -07 000000610 INF: Z Motor: After move to -0.168405, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:29.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 18:46:29.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:29.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:29.548 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:29.548 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:29.548 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:29.548 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:29.548 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:29.548 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:29.558 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:29.558 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:29.558 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:29.558 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:29.558 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 18:46:29.558 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:29.558 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:46:29.558 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:29.578 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:46:29.578 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 18:46:29.578 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:46:29.578 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 18:46:29.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36964 150\n [Camera]
17-03-17 18:46:29.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:30.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:30.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:30.178 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:30.178 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:30.178 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1450278672, 0x0, 391868352) start.
17-03-17 18:46:30.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:30.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:30.178 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:30.178 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:30.178 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1485700936, 0x0, 418435064) start.
17-03-17 18:46:30.368 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36964 780
17-03-17 18:46:30.518 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:30.558 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1450278672, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:46:30.558 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:46:30.558 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:30.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1485700936, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:46:30.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:46:30.558 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:30.558 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:30.558 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:46:30.558 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:30.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:46:30.708 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:30.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:30.708 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:30.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:30.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1061949488, 0x0, 391868352) start.
17-03-17 18:46:30.708 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:30.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:30.708 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:30.708 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:30.708 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1114246816, 0x0, 418435064) start.
17-03-17 18:46:30.898 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:46:30.898 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:30.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36964 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-17 18:46:30.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:30.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.1684214283165. ------
17-03-17 18:46:30.908 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:31.118 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1061949488, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 18:46:31.118 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:46:31.118 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:31.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1114246816, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 18:46:31.118 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:46:31.118 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:31.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:31.118 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:46:31.118 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:46:31.128 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:46:31.128 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17473 mm
17-03-17 18:46:31.128 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:31.138 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:31.138 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 222 ms to get response, and 232 ms overall
17-03-17 18:46:31.138 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:31.138 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:46:31.138 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:46:31.148 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:31.748 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38169, sync = True, waitForSettling = False)
17-03-17 18:46:31.748 -07 000000012 INF: Z Motor: Moving to -0.174726 mm, started at -0.168421 mm, distance = -6.31 um
17-03-17 18:46:31.748 -07 000000012 INF: FPGA: Xmit ZDACW 38169\n [Z Motor]
17-03-17 18:46:32.748 -07 000000561 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:46:32.748 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:32.748 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:32.748 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:46:32.748 -07 000000012 INF: FPGA: 'ZDACW 38169' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-17 18:46:32.748 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1600 ms to get response, and 1605 ms overall
17-03-17 18:46:32.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:32.748 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1590 ms to get response, and 1603 ms overall
17-03-17 18:46:32.748 -07 000000608 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:32.748 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:32.748 -07 000000561 INF: FPGA: Recv ZDACR 38169
17-03-17 18:46:32.748 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:32.748 -07 000000608 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:46:32.758 -07 000000012 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:32.758 -07 000000012 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 18:46:32.758 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:33.128 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:46:33.138 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 384 ms overall
17-03-17 18:46:33.168 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:33.168 -07 000000501 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:46:33.178 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:33.178 -07 000000608 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:33.178 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:46:33.178 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 18:46:33.578 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.000345,
17-03-17 18:46:34.128 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:34.128 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:46:34.138 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:34.138 -07 000000608 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:34.158 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:34.158 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:34.158 -07 000000608 INF: Y Motor: Moved to 69.8638 after 3015 ms (table move)
17-03-17 18:46:34.158 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174726 mm (DAC = 38169)
17-03-17 18:46:34.158 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.158 -07 000000424 INF: FPGA: Recv ZSGSRD 36491
17-03-17 18:46:34.168 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:46:34.168 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.168 -07 000000486 INF: FPGA: Recv ZSGSRD 36490
17-03-17 18:46:34.178 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.178 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.178 -07 000000424 INF: FPGA: Recv ZSGSRD 36481
17-03-17 18:46:34.188 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.188 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.188 -07 000000486 INF: FPGA: Recv ZSGSRD 36493
17-03-17 18:46:34.198 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.198 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.198 -07 000000478 INF: FPGA: Recv ZSGSRD 36492
17-03-17 18:46:34.208 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.208 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.208 -07 000000501 INF: FPGA: Recv ZSGSRD 36493
17-03-17 18:46:34.218 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.218 -07 000000478 INF: FPGA: Recv ZSGSRD 36493
17-03-17 18:46:34.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.228 -07 000000608 INF: FPGA: Recv ZSGSRD 36480
17-03-17 18:46:34.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.238 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.238 -07 000000012 INF: FPGA: Recv ZSGSRD 36479
17-03-17 18:46:34.248 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.248 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:34.248 -07 000000424 INF: FPGA: Recv ZSGSRD 36489
17-03-17 18:46:34.258 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.258 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:34.258 -07 000000618 INF: FPGA: Recv ZPIEZORD 32643
17-03-17 18:46:34.268 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:34.268 -07 000000627 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.5 V.
17-03-17 18:46:34.268 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36488 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36490 (-173.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36479 (-173.8 uncal um), Max = 36493 (-173.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:46:34.268 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36488, posNoise = 5, negNoise = 9
17-03-17 18:46:34.268 -07 000000627 INF: Z Motor: After move to -0.174726, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:34.268 -07 000000627 INF: Z Motor: Settle wait time = 2415 ms, measure time = 104 ms (allowed 150 ms), total time = 2519 ms
17-03-17 18:46:34.268 -07 000000627 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:34.318 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3180 ms
17-03-17 18:46:34.318 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:34.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:34.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:34.318 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:34.318 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:34.318 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:34.318 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:34.328 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:34.328 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:34.328 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:34.328 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:34.328 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:46:34.328 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:46:34.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:34.388 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:46:34.578 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:46:34.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:46:34.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:34.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 18:46:34.618 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:34.618 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:34.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:46:34.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:46:34.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:34.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:46:34.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:46:34.818 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:34.818 -07 000000608 INF: Autofocus start
17-03-17 18:46:34.818 -07 000000608 INF: MeasureProfile start
17-03-17 18:46:34.818 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:34.828 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:34.828 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:34.828 -07 000000608 INF: MeasureProfile done
17-03-17 18:46:34.828 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:46:34.828 -07 000000608 INF: Autofocus finished
17-03-17 18:46:35.028 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:35.028 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:35.028 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174730004639709. ----------
17-03-17 18:46:35.028 -07 000000610 INF: Cycle	17	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:35.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36684, sync = True, waitForSettling = True)
17-03-17 18:46:35.038 -07 000000610 INF: Z Motor: Moving to -0.167929 mm, started at -0.174730 mm, distance = 6.80 um
17-03-17 18:46:35.038 -07 000000610 INF: FPGA: Xmit ZDACW 36684\n [Z Motor]
17-03-17 18:46:35.038 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:46:35.048 -07 000000610 INF: FPGA: 'ZDACW 36684' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:35.048 -07 000000618 INF: FPGA: Recv ZDACR 36684
17-03-17 18:46:35.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:35.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.208 -07 000000618 INF: FPGA: Recv ZSGSRD 35436
17-03-17 18:46:35.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:35.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.218 -07 000000561 INF: FPGA: Recv ZSGSRD 35432
17-03-17 18:46:35.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.228 -07 000000561 INF: FPGA: Recv ZSGSRD 35427
17-03-17 18:46:35.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.238 -07 000000561 INF: FPGA: Recv ZSGSRD 35430
17-03-17 18:46:35.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35438
17-03-17 18:46:35.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35432
17-03-17 18:46:35.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.268 -07 000000561 INF: FPGA: Recv ZSGSRD 35438
17-03-17 18:46:35.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.278 -07 000000561 INF: FPGA: Recv ZSGSRD 35431
17-03-17 18:46:35.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35433
17-03-17 18:46:35.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:46:35.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:35.308 -07 000000478 INF: FPGA: Recv ZSGSRD 35428
17-03-17 18:46:35.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:35.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:35.338 -07 000000012 INF: FPGA: Recv ZPIEZORD 31257
17-03-17 18:46:35.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:35.348 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.2 V.
17-03-17 18:46:35.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35432 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35432 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35427 (-167.0 uncal um), Max = 35438 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:46:35.348 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35432, posNoise = 6, negNoise = 5
17-03-17 18:46:35.348 -07 000000610 INF: Z Motor: After move to -0.167929, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:35.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 18:46:35.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:35.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:35.348 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:35.348 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:35.348 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:35.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:35.348 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:35.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:35.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:35.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:35.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:35.348 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:35.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:46:35.348 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:35.358 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:35.358 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:35.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:46:35.368 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:46:35.368 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:46:35.368 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:46:35.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36860 150\n [Camera]
17-03-17 18:46:35.568 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:35.968 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:35.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:35.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:35.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:35.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1149669080, 0x0, 391868352) start.
17-03-17 18:46:35.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:35.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:35.968 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:35.968 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:35.968 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:46:36.158 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36860 780
17-03-17 18:46:36.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:36.358 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:46:36.358 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:46:36.358 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:36.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1149669080, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:46:36.358 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:46:36.358 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:36.368 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:36.368 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:36.368 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:46:36.368 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:46:36.498 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:36.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:36.498 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:36.498 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:36.498 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:46:36.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:36.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:36.508 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:36.508 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:36.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 18:46:36.628 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:36.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:36.688 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:46:36.688 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:36.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36860 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-17 18:46:36.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:36.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.167946036618009. ------
17-03-17 18:46:36.698 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:36.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:46:36.898 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:46:36.898 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:36.898 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:46:36.898 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:46:36.898 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:36.908 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:36.908 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:46:36.908 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:46:36.908 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:46:36.918 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17440 mm
17-03-17 18:46:36.918 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:36.918 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:36.918 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 216 ms to get response, and 219 ms overall
17-03-17 18:46:36.918 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:36.918 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:46:36.918 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:46:36.928 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:37.748 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38098, sync = True, waitForSettling = False)
17-03-17 18:46:37.748 -07 000000593 INF: Z Motor: Moving to -0.174401 mm, started at -0.167946 mm, distance = -6.46 um
17-03-17 18:46:37.748 -07 000000593 INF: FPGA: Xmit ZDACW 38098\n [Z Motor]
17-03-17 18:46:38.748 -07 000000415 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:46:38.748 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:38.748 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1810 ms to get response, and 1822 ms overall
17-03-17 18:46:38.748 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:46:38.748 -07 000000593 INF: FPGA: 'ZDACW 38098' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 18:46:38.748 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:38.748 -07 000000561 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:38.748 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1820 ms to get response, and 1823 ms overall
17-03-17 18:46:38.748 -07 000000415 INF: FPGA: Recv ZDACR 38098
17-03-17 18:46:38.748 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:38.748 -07 000000561 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:46:38.758 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:38.758 -07 000000593 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 18:46:38.758 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:39.058 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.986717,
17-03-17 18:46:39.128 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:46:39.128 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:46:39.168 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:39.168 -07 000000382 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:46:39.178 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:39.178 -07 000000561 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:39.178 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:46:39.178 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.184 mm/sec
17-03-17 18:46:40.128 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:40.128 -07 000000415 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:46:40.138 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:40.138 -07 000000561 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:40.158 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:40.158 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:40.158 -07 000000561 INF: Y Motor: Moved to 70.6890 after 3231 ms (table move)
17-03-17 18:46:40.158 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174401 mm (DAC = 38098)
17-03-17 18:46:40.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.158 -07 000000593 INF: FPGA: Recv ZSGSRD 36447
17-03-17 18:46:40.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:40.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.168 -07 000000480 INF: FPGA: Recv ZSGSRD 36435
17-03-17 18:46:40.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.178 -07 000000382 INF: FPGA: Recv ZSGSRD 36439
17-03-17 18:46:40.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.188 -07 000000569 INF: FPGA: Recv ZSGSRD 36437
17-03-17 18:46:40.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.198 -07 000000382 INF: FPGA: Recv ZSGSRD 36446
17-03-17 18:46:40.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.208 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.208 -07 000000569 INF: FPGA: Recv ZSGSRD 36444
17-03-17 18:46:40.218 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.218 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.218 -07 000000382 INF: FPGA: Recv ZSGSRD 36440
17-03-17 18:46:40.228 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.228 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.228 -07 000000569 INF: FPGA: Recv ZSGSRD 36436
17-03-17 18:46:40.238 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.238 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.238 -07 000000382 INF: FPGA: Recv ZSGSRD 36441
17-03-17 18:46:40.248 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.248 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:40.248 -07 000000569 INF: FPGA: Recv ZSGSRD 36437
17-03-17 18:46:40.258 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.258 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:40.258 -07 000000382 INF: FPGA: Recv ZPIEZORD 32580
17-03-17 18:46:40.268 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:40.268 -07 000000429 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.813 V. Piezo Error = -8.5 V.
17-03-17 18:46:40.268 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36440 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36440 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36435 (-173.5 uncal um), Max = 36447 (-173.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:46:40.268 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36440, posNoise = 7, negNoise = 5
17-03-17 18:46:40.268 -07 000000429 INF: Z Motor: After move to -0.174401, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:40.268 -07 000000429 INF: Z Motor: Settle wait time = 2412 ms, measure time = 107 ms (allowed 150 ms), total time = 2519 ms
17-03-17 18:46:40.268 -07 000000429 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:40.318 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3396 ms
17-03-17 18:46:40.318 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:40.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:40.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:40.318 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:40.318 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:40.318 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:40.318 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:40.318 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:40.318 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:40.328 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:40.328 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:40.338 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:46:40.338 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:46:40.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:40.378 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:40.578 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:40.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:40.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:40.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1185091344, 0x0, 559484976) start.
17-03-17 18:46:40.618 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:40.618 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:40.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:46:40.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1185091344, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:46:40.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:40.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:46:40.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:46:40.818 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:40.818 -07 000000382 INF: Autofocus start
17-03-17 18:46:40.818 -07 000000382 INF: MeasureProfile start
17-03-17 18:46:40.818 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:40.828 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:46:40.828 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:40.828 -07 000000382 INF: MeasureProfile done
17-03-17 18:46:40.828 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:46:40.828 -07 000000382 INF: Autofocus finished
17-03-17 18:46:41.028 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:41.028 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:41.028 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174421642456904. ----------
17-03-17 18:46:41.028 -07 000000610 INF: Cycle	17	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:41.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36595, sync = True, waitForSettling = True)
17-03-17 18:46:41.038 -07 000000610 INF: Z Motor: Moving to -0.167521 mm, started at -0.174422 mm, distance = 6.90 um
17-03-17 18:46:41.038 -07 000000610 INF: FPGA: Xmit ZDACW 36595\n [Z Motor]
17-03-17 18:46:41.038 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:46:41.048 -07 000000610 INF: FPGA: 'ZDACW 36595' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:41.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:41.048 -07 000000429 INF: FPGA: Recv ZDACR 36595
17-03-17 18:46:41.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.208 -07 000000593 INF: FPGA: Recv ZSGSRD 35365
17-03-17 18:46:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.218 -07 000000382 INF: FPGA: Recv ZSGSRD 35370
17-03-17 18:46:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.228 -07 000000478 INF: FPGA: Recv ZSGSRD 35371
17-03-17 18:46:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.238 -07 000000429 INF: FPGA: Recv ZSGSRD 35365
17-03-17 18:46:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.248 -07 000000475 INF: FPGA: Recv ZSGSRD 35368
17-03-17 18:46:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35370
17-03-17 18:46:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35368
17-03-17 18:46:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.278 -07 000000382 INF: FPGA: Recv ZSGSRD 35364
17-03-17 18:46:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35366
17-03-17 18:46:41.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:41.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35375
17-03-17 18:46:41.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:41.308 -07 000000569 INF: FPGA: Recv ZPIEZORD 31164
17-03-17 18:46:41.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:41.318 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.3 V.
17-03-17 18:46:41.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35368 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35368 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35364 (-166.6 uncal um), Max = 35375 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:46:41.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35368, posNoise = 7, negNoise = 4
17-03-17 18:46:41.318 -07 000000610 INF: Z Motor: After move to -0.167521, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:41.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:46:41.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:41.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:41.318 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:41.318 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:41.318 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:41.318 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:41.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:41.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:41.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:41.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:41.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:41.318 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:41.328 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:41.328 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:41.328 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:41.328 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:41.338 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:46:41.338 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:46:41.338 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:46:41.338 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:46:41.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36772 150\n [Camera]
17-03-17 18:46:41.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:41.628 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:41.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:41.938 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:41.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:41.938 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:41.938 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:41.938 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:46:41.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:41.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:41.938 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:41.938 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:41.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:46:42.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36772 780
17-03-17 18:46:42.288 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 18:46:42.338 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:46:42.338 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:46:42.338 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:42.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:46:42.338 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:46:42.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:42.348 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:42.348 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:46:42.348 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:46:42.358 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:46:42.468 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:42.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:42.468 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:42.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:42.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:42.598 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:42.598 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:42.598 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:46:42.608 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:42.608 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:46:42.658 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:46:42.658 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:42.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36772 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:46:42.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:42.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167534887040937. ------
17-03-17 18:46:42.668 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:42.668 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17424 mm
17-03-17 18:46:42.668 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:42.668 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:46:42.668 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:46:42.678 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:42.978 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 18:46:42.978 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:46:42.978 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:42.978 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:42.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:46:42.978 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:46:42.978 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:42.988 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:42.988 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 18:46:42.988 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:46:42.998 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:42.998 -07 000000429 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:46:42.998 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 313 ms to get response, and 325 ms overall
17-03-17 18:46:42.998 -07 000000478 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:42.998 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 323 ms to get response, and 328 ms overall
17-03-17 18:46:42.998 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38063, sync = True, waitForSettling = False)
17-03-17 18:46:42.998 -07 000000475 INF: Z Motor: Moving to -0.174241 mm, started at -0.167535 mm, distance = -6.71 um
17-03-17 18:46:42.998 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:42.998 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:42.998 -07 000000478 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:46:43.008 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:43.018 -07 000000475 INF: FPGA: Xmit ZDACW 38063\n [Z Motor]
17-03-17 18:46:43.018 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:46:43.028 -07 000000475 INF: FPGA: 'ZDACW 38063' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:46:43.028 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:43.028 -07 000000429 INF: FPGA: Recv ZDACR 38063
17-03-17 18:46:43.038 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:43.038 -07 000000475 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:46:43.198 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:43.198 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 18:46:43.378 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:46:43.378 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 18:46:43.428 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:43.428 -07 000000429 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:46:43.438 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:43.438 -07 000000478 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:43.438 -07 000000478 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:46:43.438 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.214 mm/sec
17-03-17 18:46:44.388 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:44.388 -07 000000593 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:46:44.398 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.398 -07 000000478 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:44.418 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.004458,
17-03-17 18:46:44.418 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:44.418 -07 000000478 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:44.418 -07 000000478 INF: Y Motor: Moved to 71.5195 after 1744 ms (table move)
17-03-17 18:46:44.418 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174241 mm (DAC = 38063)
17-03-17 18:46:44.428 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36409
17-03-17 18:46:44.438 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:46:44.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.438 -07 000000593 INF: FPGA: Recv ZSGSRD 36413
17-03-17 18:46:44.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:44.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.458 -07 000000478 INF: FPGA: Recv ZSGSRD 36413
17-03-17 18:46:44.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:46:44.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.468 -07 000000478 INF: FPGA: Recv ZSGSRD 36417
17-03-17 18:46:44.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.498 -07 000000429 INF: FPGA: Recv ZSGSRD 36410
17-03-17 18:46:44.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:44.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.508 -07 000000478 INF: FPGA: Recv ZSGSRD 36407
17-03-17 18:46:44.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.518 -07 000000478 INF: FPGA: Recv ZSGSRD 36413
17-03-17 18:46:44.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.528 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.528 -07 000000501 INF: FPGA: Recv ZSGSRD 36419
17-03-17 18:46:44.538 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.538 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.538 -07 000000593 INF: FPGA: Recv ZSGSRD 36414
17-03-17 18:46:44.548 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.548 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:44.548 -07 000000501 INF: FPGA: Recv ZSGSRD 36416
17-03-17 18:46:44.558 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.558 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:44.558 -07 000000429 INF: FPGA: Recv ZPIEZORD 32544
17-03-17 18:46:44.568 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:44.568 -07 000000476 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.808 V. Piezo Error = -8.6 V.
17-03-17 18:46:44.568 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36413 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36413 (-173.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36407 (-173.3 uncal um), Max = 36419 (-173.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:46:44.568 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36413, posNoise = 6, negNoise = 6
17-03-17 18:46:44.568 -07 000000476 INF: Z Motor: After move to -0.174241, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:44.568 -07 000000476 INF: Z Motor: Settle wait time = 1420 ms, measure time = 145 ms (allowed 150 ms), total time = 1565 ms
17-03-17 18:46:44.568 -07 000000476 INF: Z Motor: Waiting extra 5 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:44.578 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1904 ms
17-03-17 18:46:44.578 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:44.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:44.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:44.578 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:44.578 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:44.578 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:44.578 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:44.578 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:44.578 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:44.588 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:44.588 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:44.598 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:46:44.598 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:46:44.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:44.648 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:44.848 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:44.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:44.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:44.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 18:46:44.888 -07 000000424 INF: FPGA: Recv @CAMSNAP 283
17-03-17 18:46:44.888 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:44.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 18:46:44.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:46:44.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:44.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:44.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:46:44.988 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:44.988 -07 000000478 INF: Autofocus start
17-03-17 18:46:44.988 -07 000000478 INF: MeasureProfile start
17-03-17 18:46:44.988 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:44.998 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:44.998 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:44.998 -07 000000478 INF: MeasureProfile done
17-03-17 18:46:44.998 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:46:44.998 -07 000000478 INF: Autofocus finished
17-03-17 18:46:45.198 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:45.198 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:45.198 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174248188729077. ----------
17-03-17 18:46:45.198 -07 000000610 INF: Cycle	17	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:45.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36560, sync = True, waitForSettling = True)
17-03-17 18:46:45.208 -07 000000610 INF: Z Motor: Moving to -0.167361 mm, started at -0.174248 mm, distance = 6.89 um
17-03-17 18:46:45.208 -07 000000610 INF: FPGA: Xmit ZDACW 36560\n [Z Motor]
17-03-17 18:46:45.208 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:46:45.218 -07 000000610 INF: FPGA: 'ZDACW 36560' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:45.218 -07 000000618 INF: FPGA: Recv ZDACR 36560
17-03-17 18:46:45.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:45.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.378 -07 000000012 INF: FPGA: Recv ZSGSRD 35342
17-03-17 18:46:45.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:45.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.388 -07 000000593 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:46:45.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.398 -07 000000476 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:46:45.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.408 -07 000000501 INF: FPGA: Recv ZSGSRD 35349
17-03-17 18:46:45.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35340
17-03-17 18:46:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.428 -07 000000593 INF: FPGA: Recv ZSGSRD 35342
17-03-17 18:46:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35342
17-03-17 18:46:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.448 -07 000000478 INF: FPGA: Recv ZSGSRD 35345
17-03-17 18:46:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.458 -07 000000424 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:46:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:45.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35340
17-03-17 18:46:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:45.478 -07 000000618 INF: FPGA: Recv ZPIEZORD 31096
17-03-17 18:46:45.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:45.488 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -9.4 V.
17-03-17 18:46:45.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35342 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35342 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35340 (-166.5 uncal um), Max = 35349 (-166.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:46:45.488 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35342, posNoise = 7, negNoise = 2
17-03-17 18:46:45.488 -07 000000610 INF: Z Motor: After move to -0.167361, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:45.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:46:45.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:45.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:45.488 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:45.488 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:45.488 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:45.488 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:45.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:45.488 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:45.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:45.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:45.488 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:45.488 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:45.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:45.488 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:45.488 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:45.498 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:45.508 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:46:45.508 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:46:45.508 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:46:45.508 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:46:45.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36737 150\n [Camera]
17-03-17 18:46:45.708 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:46.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:46.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:46.108 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:46.108 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:46.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:46.108 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:46.108 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:46.108 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-17 18:46:46.118 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:46.118 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-17 18:46:46.298 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36737 780
17-03-17 18:46:46.448 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:46.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:46:46.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:46:46.508 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:46.508 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:46:46.508 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:46:46.508 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:46.508 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:46.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:46:46.508 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:46.518 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:46:46.628 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:46.638 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:46.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:46.638 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:46.758 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:46.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:46.758 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:46.768 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:46.768 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:46.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:46:46.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) start.
17-03-17 18:46:46.828 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:46:46.828 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:46.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36737 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:46:46.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:46.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.167367857525251. ------
17-03-17 18:46:46.838 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:46.838 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17326 mm
17-03-17 18:46:46.838 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:46.838 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:46.838 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:46:46.838 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:46:46.848 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:46:46.848 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:46.848 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37849, sync = True, waitForSettling = False)
17-03-17 18:46:46.848 -07 000000627 INF: Z Motor: Moving to -0.173262 mm, started at -0.167368 mm, distance = -5.89 um
17-03-17 18:46:46.848 -07 000000429 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:46:46.858 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:46.858 -07 000000618 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:46.858 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:46.858 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:46.858 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:46:46.868 -07 000000627 INF: FPGA: Xmit ZDACW 37849\n [Z Motor]
17-03-17 18:46:46.868 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:46:46.878 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:46.878 -07 000000627 INF: FPGA: 'ZDACW 37849' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:46.888 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:46.888 -07 000000608 INF: FPGA: Recv ZDACR 37849
17-03-17 18:46:46.898 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:46:46.898 -07 000000627 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:46:47.058 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:47.058 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 18:46:47.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:46:47.168 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:46:47.168 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:47.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:46:47.168 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:46:47.168 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:47.168 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:47.168 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 18:46:47.168 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:47.178 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:46:47.248 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:46:47.248 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:46:47.288 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:47.288 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:46:47.298 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:47.298 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:47.298 -07 000000618 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:46:47.298 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 18:46:48.248 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:48.248 -07 000000608 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:46:48.258 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:48.258 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:48.278 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:48.278 -07 000000618 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:48.278 -07 000000618 INF: Y Motor: Moved to 72.3501 after 1430 ms (table move)
17-03-17 18:46:48.278 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173262 mm (DAC = 37849)
17-03-17 18:46:48.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.288 -07 000000608 INF: FPGA: Recv ZSGSRD 36263
17-03-17 18:46:48.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:46:48.288 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36259
17-03-17 18:46:48.298 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.298 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.298 -07 000000618 INF: FPGA: Recv ZSGSRD 36256
17-03-17 18:46:48.308 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.308 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.308 -07 000000618 INF: FPGA: Recv ZSGSRD 36257
17-03-17 18:46:48.318 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.318 -07 000000618 INF: FPGA: Recv ZSGSRD 36261
17-03-17 18:46:48.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.328 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.328 -07 000000618 INF: FPGA: Recv ZSGSRD 36262
17-03-17 18:46:48.338 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.338 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.338 -07 000000618 INF: FPGA: Recv ZSGSRD 36260
17-03-17 18:46:48.348 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.348 -07 000000618 INF: FPGA: Recv ZSGSRD 36264
17-03-17 18:46:48.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.358 -07 000000618 INF: FPGA: Recv ZSGSRD 36261
17-03-17 18:46:48.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.368 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:48.368 -07 000000618 INF: FPGA: Recv ZSGSRD 36258
17-03-17 18:46:48.378 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.378 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:48.378 -07 000000626 INF: FPGA: Recv ZPIEZORD 32340
17-03-17 18:46:48.388 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:48.388 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.775 V. Piezo Error = -8.7 V.
17-03-17 18:46:48.388 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36260 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36260 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36256 (-172.4 uncal um), Max = 36264 (-172.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:46:48.388 -07 000000424 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36260, posNoise = 4, negNoise = 4
17-03-17 18:46:48.388 -07 000000424 INF: Z Motor: After move to -0.173262, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:48.388 -07 000000424 INF: Z Motor: Settle wait time = 1433 ms, measure time = 106 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:46:48.388 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:48.438 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:46:48.438 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:48.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:48.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:48.438 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:48.438 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:48.438 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:48.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:48.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:48.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:48.448 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:46:48.448 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:48.458 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:46:48.458 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:46:48.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:48.508 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:48.708 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:48.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:48.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:48.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) start.
17-03-17 18:46:48.748 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:48.748 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:48.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 18:46:48.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:46:48.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:48.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:48.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 18:46:48.848 -07 000000626 INF: Autofocus start
17-03-17 18:46:48.848 -07 000000626 INF: MeasureProfile start
17-03-17 18:46:48.848 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:48.848 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:48.858 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:46:48.858 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:48.858 -07 000000626 INF: MeasureProfile done
17-03-17 18:46:48.858 -07 000000626 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:46:48.858 -07 000000626 INF: Autofocus finished
17-03-17 18:46:49.058 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:49.058 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:49.058 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173265284271387. ----------
17-03-17 18:46:49.058 -07 000000610 INF: Cycle	17	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:49.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36382, sync = True, waitForSettling = True)
17-03-17 18:46:49.068 -07 000000610 INF: Z Motor: Moving to -0.166546 mm, started at -0.173265 mm, distance = 6.72 um
17-03-17 18:46:49.068 -07 000000610 INF: FPGA: Xmit ZDACW 36382\n [Z Motor]
17-03-17 18:46:49.068 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:46:49.078 -07 000000610 INF: FPGA: 'ZDACW 36382' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:49.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:49.078 -07 000000424 INF: FPGA: Recv ZDACR 36382
17-03-17 18:46:49.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35221
17-03-17 18:46:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.248 -07 000000608 INF: FPGA: Recv ZSGSRD 35216
17-03-17 18:46:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35216
17-03-17 18:46:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.268 -07 000000626 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:46:49.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:46:49.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35209
17-03-17 18:46:49.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.288 -07 000000608 INF: FPGA: Recv ZSGSRD 35211
17-03-17 18:46:49.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35212
17-03-17 18:46:49.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.308 -07 000000424 INF: FPGA: Recv ZSGSRD 35213
17-03-17 18:46:49.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35221
17-03-17 18:46:49.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:49.328 -07 000000424 INF: FPGA: Recv ZSGSRD 35209
17-03-17 18:46:49.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:49.338 -07 000000618 INF: FPGA: Recv ZPIEZORD 30994
17-03-17 18:46:49.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:49.348 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.3 V.
17-03-17 18:46:49.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35214 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35214 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35209 (-165.6 uncal um), Max = 35221 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:46:49.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35214, posNoise = 7, negNoise = 5
17-03-17 18:46:49.348 -07 000000610 INF: Z Motor: After move to -0.166546, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:49.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:46:49.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:49.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:49.348 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:49.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:49.348 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:49.348 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:49.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:49.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:46:49.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:49.348 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:49.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:46:49.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:49.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:49.358 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:49.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:49.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:49.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:46:49.368 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:46:49.368 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:46:49.368 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:46:49.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36559 150\n [Camera]
17-03-17 18:46:49.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:49.818 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.008536,
17-03-17 18:46:49.958 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:49.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:49.968 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:49.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:49.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:49.968 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:49.968 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:49.978 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:46:49.978 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:49.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:46:50.268 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36559 780
17-03-17 18:46:50.308 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:50.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:46:50.348 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:46:50.348 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:50.348 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:46:50.348 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:46:50.348 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:50.348 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:50.348 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:46:50.358 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:50.358 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:46:50.498 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:50.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:50.498 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:50.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:50.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:50.498 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:50.508 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:50.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:46:50.508 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:50.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:46:50.688 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 18:46:50.688 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:50.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36559 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-17 18:46:50.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:50.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166545558371105. ------
17-03-17 18:46:50.698 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17310 mm
17-03-17 18:46:50.698 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:50.698 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:50.698 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:50.698 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:46:50.698 -07 000000608 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:46:50.698 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37814, sync = True, waitForSettling = False)
17-03-17 18:46:50.698 -07 000000462 INF: Z Motor: Moving to -0.173101 mm, started at -0.166546 mm, distance = -6.56 um
17-03-17 18:46:50.708 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:50.708 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:50.708 -07 000000480 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:46:50.718 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:46:50.718 -07 000000608 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:50.718 -07 000000608 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:50.718 -07 000000608 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:46:50.718 -07 000000462 INF: FPGA: Xmit ZDACW 37814\n [Z Motor]
17-03-17 18:46:50.718 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:46:50.728 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:50.728 -07 000000462 INF: FPGA: 'ZDACW 37814' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:46:50.738 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:50.748 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:50.748 -07 000000415 INF: FPGA: Recv ZDACR 37814
17-03-17 18:46:50.758 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:50.758 -07 000000462 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:46:50.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:46:50.908 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:46:50.908 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:50.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:46:50.908 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:46:50.908 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:50.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:50.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:46:50.908 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:50.918 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:46:50.928 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:50.928 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:46:51.108 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:46:51.108 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:46:51.148 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:51.148 -07 000000475 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:46:51.158 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:51.158 -07 000000608 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:51.158 -07 000000608 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:46:51.158 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.112 mm/sec
17-03-17 18:46:51.628 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:51.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:52.108 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:52.108 -07 000000626 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:46:52.118 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.118 -07 000000608 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:52.138 -07 000000608 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:52.138 -07 000000608 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:52.138 -07 000000608 INF: Y Motor: Moved to 73.1768 after 1433 ms (table move)
17-03-17 18:46:52.138 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173101 mm (DAC = 37814)
17-03-17 18:46:52.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.138 -07 000000501 INF: FPGA: Recv ZSGSRD 36233
17-03-17 18:46:52.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:46:52.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.148 -07 000000626 INF: FPGA: Recv ZSGSRD 36234
17-03-17 18:46:52.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.158 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.158 -07 000000476 INF: FPGA: Recv ZSGSRD 36234
17-03-17 18:46:52.168 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36235
17-03-17 18:46:52.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.178 -07 000000608 INF: FPGA: Recv ZSGSRD 36232
17-03-17 18:46:52.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36233
17-03-17 18:46:52.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36246
17-03-17 18:46:52.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.208 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.208 -07 000000627 INF: FPGA: Recv ZSGSRD 36234
17-03-17 18:46:52.218 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.218 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.218 -07 000000569 INF: FPGA: Recv ZSGSRD 36233
17-03-17 18:46:52.228 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.228 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:52.228 -07 000000627 INF: FPGA: Recv ZSGSRD 36232
17-03-17 18:46:52.238 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.238 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:52.238 -07 000000569 INF: FPGA: Recv ZPIEZORD 32345
17-03-17 18:46:52.248 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.248 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -8.6 V.
17-03-17 18:46:52.248 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36235 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36234 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36232 (-172.2 uncal um), Max = 36246 (-172.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:46:52.248 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36235, posNoise = 11, negNoise = 3
17-03-17 18:46:52.248 -07 000000424 INF: Z Motor: After move to -0.173101, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:52.248 -07 000000424 INF: Z Motor: Settle wait time = 1436 ms, measure time = 106 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:46:52.248 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:52.298 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:46:52.298 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:52.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:52.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:52.298 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:52.298 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:52.298 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:52.298 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:52.298 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:52.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:52.308 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:52.308 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:52.318 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:46:52.318 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:46:52.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:52.368 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:52.568 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:52.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:52.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:52.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:46:52.598 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:52.608 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:52.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:46:52.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:46:52.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:52.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:52.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:46:52.708 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:52.708 -07 000000569 INF: Autofocus start
17-03-17 18:46:52.708 -07 000000569 INF: MeasureProfile start
17-03-17 18:46:52.708 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:52.718 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:46:52.718 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:52.718 -07 000000569 INF: MeasureProfile done
17-03-17 18:46:52.718 -07 000000569 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:46:52.718 -07 000000569 INF: Autofocus finished
17-03-17 18:46:52.918 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:52.918 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:46:52.918 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.173104678967843. ----------
17-03-17 18:46:52.918 -07 000000610 INF: Cycle	17	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:52.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36365, sync = True, waitForSettling = True)
17-03-17 18:46:52.928 -07 000000610 INF: Z Motor: Moving to -0.166468 mm, started at -0.173105 mm, distance = 6.64 um
17-03-17 18:46:52.928 -07 000000610 INF: FPGA: Xmit ZDACW 36365\n [Z Motor]
17-03-17 18:46:52.928 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:46:52.938 -07 000000610 INF: FPGA: 'ZDACW 36365' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:52.938 -07 000000627 INF: FPGA: Recv ZDACR 36365
17-03-17 18:46:52.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:52.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:53.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.098 -07 000000569 INF: FPGA: Recv ZSGSRD 35203
17-03-17 18:46:53.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:53.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:46:53.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.118 -07 000000627 INF: FPGA: Recv ZSGSRD 35205
17-03-17 18:46:53.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35201
17-03-17 18:46:53.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35207
17-03-17 18:46:53.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.148 -07 000000569 INF: FPGA: Recv ZSGSRD 35206
17-03-17 18:46:53.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.158 -07 000000424 INF: FPGA: Recv ZSGSRD 35201
17-03-17 18:46:53.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35201
17-03-17 18:46:53.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35200
17-03-17 18:46:53.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:53.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:53.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35202
17-03-17 18:46:53.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:46:53.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:53.198 -07 000000626 INF: FPGA: Recv ZPIEZORD 30972
17-03-17 18:46:53.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:53.208 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.3 V.
17-03-17 18:46:53.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35203 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35202 (-165.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35200 (-165.6 uncal um), Max = 35207 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:46:53.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35203, posNoise = 4, negNoise = 3
17-03-17 18:46:53.208 -07 000000610 INF: Z Motor: After move to -0.166468, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:53.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:46:53.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:53.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:53.208 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:53.208 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:53.208 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:53.208 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:53.208 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:53.208 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:53.208 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:53.208 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:53.208 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:46:53.208 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:53.218 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:53.218 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:53.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:53.218 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:53.218 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:46:53.218 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:46:53.218 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:46:53.218 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:46:53.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36542 150\n [Camera]
17-03-17 18:46:53.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:53.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:53.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:53.818 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:53.818 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:53.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:53.828 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:53.828 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:53.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:46:53.828 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:53.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:46:54.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36542 780
17-03-17 18:46:54.158 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:54.198 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:46:54.198 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:46:54.198 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:54.198 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:46:54.198 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:46:54.198 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:54.198 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:54.198 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:46:54.208 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:46:54.208 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:46:54.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:54.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:54.358 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:54.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:54.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:54.358 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:54.358 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:46:54.358 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:54.358 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:54.358 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:46:54.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:46:54.548 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:54.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36542 150' command took 4 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:46:54.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:54.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.166474892037546. ------
17-03-17 18:46:54.548 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:54.548 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17295 mm
17-03-17 18:46:54.548 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:54.548 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:46:54.548 -07 000000486 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:46:54.558 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:54.558 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:54.558 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:46:54.558 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37780, sync = True, waitForSettling = False)
17-03-17 18:46:54.558 -07 000000626 INF: Z Motor: Moving to -0.172946 mm, started at -0.166475 mm, distance = -6.47 um
17-03-17 18:46:54.558 -07 000000424 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:46:54.568 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:54.568 -07 000000626 INF: FPGA: Xmit ZDACW 37780\n [Z Motor]
17-03-17 18:46:54.568 -07 000000486 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:54.568 -07 000000486 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:54.568 -07 000000486 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:46:54.568 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:46:54.578 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:54.578 -07 000000626 INF: FPGA: 'ZDACW 37780' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:46:54.588 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:54.598 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:54.598 -07 000000627 INF: FPGA: Recv ZDACR 37780
17-03-17 18:46:54.608 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:54.608 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:46:54.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:46:54.748 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:46:54.748 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:54.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:46:54.748 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:46:54.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:54.748 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:54.758 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:54.758 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:46:54.758 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:46:54.778 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:54.778 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 18:46:54.968 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:46:54.968 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 18:46:54.988 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:54.998 -07 000000561 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:46:54.998 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:46:54.998 -07 000000486 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:54.998 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:46:54.998 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.846 mm, average velocity = 2.115 mm/sec
17-03-17 18:46:55.178 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.996267,
17-03-17 18:46:55.948 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:55.948 -07 000000561 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:46:55.958 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:55.958 -07 000000486 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:55.968 -07 000000486 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:55.968 -07 000000486 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:55.968 -07 000000486 INF: Y Motor: Moved to 74.0088 after 1415 ms (table move)
17-03-17 18:46:55.968 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172946 mm (DAC = 37780)
17-03-17 18:46:55.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:55.978 -07 000000569 INF: FPGA: Recv ZSGSRD 36215
17-03-17 18:46:55.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:46:55.978 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:55.978 -07 000000486 INF: FPGA: Recv ZSGSRD 36213
17-03-17 18:46:55.988 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:55.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:55.988 -07 000000569 INF: FPGA: Recv ZSGSRD 36209
17-03-17 18:46:55.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:55.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:55.998 -07 000000486 INF: FPGA: Recv ZSGSRD 36212
17-03-17 18:46:56.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.008 -07 000000569 INF: FPGA: Recv ZSGSRD 36208
17-03-17 18:46:56.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.018 -07 000000486 INF: FPGA: Recv ZSGSRD 36208
17-03-17 18:46:56.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.028 -07 000000569 INF: FPGA: Recv ZSGSRD 36217
17-03-17 18:46:56.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.038 -07 000000486 INF: FPGA: Recv ZSGSRD 36207
17-03-17 18:46:56.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.048 -07 000000626 INF: FPGA: Recv ZSGSRD 36209
17-03-17 18:46:56.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.058 -07 000000475 INF: FPGA: Recv ZSGSRD 36211
17-03-17 18:46:56.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.068 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:56.068 -07 000000626 INF: FPGA: Recv ZPIEZORD 32302
17-03-17 18:46:56.078 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.078 -07 000000382 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.765 V. Piezo Error = -8.6 V.
17-03-17 18:46:56.078 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36211 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36210 (-172.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36207 (-172.0 uncal um), Max = 36217 (-172.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:46:56.078 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36211, posNoise = 6, negNoise = 4
17-03-17 18:46:56.078 -07 000000382 INF: Z Motor: After move to -0.172946, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:56.078 -07 000000382 INF: Z Motor: Settle wait time = 1417 ms, measure time = 102 ms (allowed 150 ms), total time = 1519 ms
17-03-17 18:46:56.078 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:56.128 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 18:46:56.128 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:56.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:56.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:56.128 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:56.128 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:56.128 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:56.128 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:56.128 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:56.128 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:56.138 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:56.138 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:46:56.148 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:46:56.148 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:46:56.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:46:56.198 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:46:56.398 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:46:56.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:46:56.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:46:56.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2363355008, 0x0, 559484976) start.
17-03-17 18:46:56.438 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:46:56.438 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:46:56.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 18:46:56.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2363355008, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:46:56.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:56.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:46:56.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:46:56.538 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:56.538 -07 000000626 INF: Autofocus start
17-03-17 18:46:56.538 -07 000000626 INF: MeasureProfile start
17-03-17 18:46:56.538 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:56.548 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:46:56.548 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:46:56.548 -07 000000626 INF: MeasureProfile done
17-03-17 18:46:56.548 -07 000000626 INF: X=-32  Z correction [um]=-0.2344
17-03-17 18:46:56.548 -07 000000626 INF: Autofocus finished
17-03-17 18:46:56.628 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:46:56.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:46:56.748 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:46:56.748 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:46:56.748 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172950497876441. ----------
17-03-17 18:46:56.758 -07 000000610 INF: Cycle	17	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:46:56.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36241, sync = True, waitForSettling = True)
17-03-17 18:46:56.758 -07 000000610 INF: Z Motor: Moving to -0.165901 mm, started at -0.172950 mm, distance = 7.05 um
17-03-17 18:46:56.768 -07 000000610 INF: FPGA: Xmit ZDACW 36241\n [Z Motor]
17-03-17 18:46:56.768 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:46:56.778 -07 000000610 INF: FPGA: 'ZDACW 36241' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:46:56.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:56.778 -07 000000382 INF: FPGA: Recv ZDACR 36241
17-03-17 18:46:56.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:46:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35120
17-03-17 18:46:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.948 -07 000000424 INF: FPGA: Recv ZSGSRD 35117
17-03-17 18:46:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35105
17-03-17 18:46:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.968 -07 000000475 INF: FPGA: Recv ZSGSRD 35120
17-03-17 18:46:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.978 -07 000000382 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:46:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.988 -07 000000424 INF: FPGA: Recv ZSGSRD 35108
17-03-17 18:46:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:56.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35119
17-03-17 18:46:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:57.008 -07 000000382 INF: FPGA: Recv ZSGSRD 35112
17-03-17 18:46:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:57.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35112
17-03-17 18:46:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:57.028 -07 000000569 INF: FPGA: Recv ZSGSRD 35114
17-03-17 18:46:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:57.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:57.038 -07 000000424 INF: FPGA: Recv ZPIEZORD 30854
17-03-17 18:46:57.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:57.048 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.4 V.
17-03-17 18:46:57.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35114 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35116 (-165.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35105 (-165.0 uncal um), Max = 35120 (-165.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:46:57.048 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35114, posNoise = 6, negNoise = 9
17-03-17 18:46:57.048 -07 000000610 INF: Z Motor: After move to -0.165901, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:57.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 18:46:57.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:57.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:57.048 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:57.048 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:57.048 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:46:57.048 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:57.048 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:46:57.048 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:46:57.048 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:46:57.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:46:57.048 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:46:57.048 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:46:57.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:46:57.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:46:57.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:46:57.058 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:46:57.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:46:57.068 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:46:57.068 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:46:57.068 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:46:57.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36418 150\n [Camera]
17-03-17 18:46:57.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:46:57.658 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:46:57.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:46:57.658 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:57.658 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:57.658 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:46:57.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:46:57.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:46:57.668 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:57.668 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:57.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1061949488, 0x0, 418435064) start.
17-03-17 18:46:57.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36418 780
17-03-17 18:46:58.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:46:58.038 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1061949488, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:46:58.038 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:46:58.038 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:58.048 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:58.048 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:46:58.048 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:46:58.048 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:58.048 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:58.048 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:46:58.048 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:46:58.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:46:58.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:46:58.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:46:58.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:46:58.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1097371752, 0x0, 391868352) start.
17-03-17 18:46:58.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:46:58.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:46:58.198 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:46:58.198 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:46:58.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1132794016, 0x0, 418435064) start.
17-03-17 18:46:58.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:46:58.388 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:46:58.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36418 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-17 18:46:58.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:46:58.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165903137156929. ------
17-03-17 18:46:58.398 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:46:58.398 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17212 mm
17-03-17 18:46:58.398 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:46:58.398 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:46:58.398 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:46:58.398 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:46:58.398 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37600, sync = True, waitForSettling = False)
17-03-17 18:46:58.398 -07 000000475 INF: Z Motor: Moving to -0.172122 mm, started at -0.165903 mm, distance = -6.22 um
17-03-17 18:46:58.408 -07 000000475 INF: FPGA: Xmit ZDACW 37600\n [Z Motor]
17-03-17 18:46:58.408 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:58.408 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:46:58.418 -07 000000475 INF: FPGA: 'ZDACW 37600' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:46:58.418 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:58.418 -07 000000382 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:46:58.428 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:46:58.428 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:46:58.428 -07 000000424 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:58.428 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:46:58.428 -07 000000424 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:46:58.438 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:46:58.438 -07 000000618 INF: FPGA: Recv ZDACR 37600
17-03-17 18:46:58.448 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:46:58.448 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:46:58.448 -07 000000475 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:46:58.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1097371752, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:46:58.588 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:46:58.588 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:58.588 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1132794016, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:46:58.588 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:46:58.588 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:46:58.598 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:46:58.598 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:46:58.598 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:46:58.598 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:46:58.628 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:46:58.628 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:46:58.818 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:46:58.818 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:46:58.838 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:58.848 -07 000000561 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:46:58.858 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:58.858 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:58.858 -07 000000424 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:46:58.858 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:46:59.808 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:46:59.808 -07 000000561 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:46:59.818 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:46:59.818 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:46:59.828 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:46:59.828 -07 000000424 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:46:59.828 -07 000000424 INF: Y Motor: Moved to 74.8325 after 1430 ms (table move)
17-03-17 18:46:59.828 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172122 mm (DAC = 37600)
17-03-17 18:46:59.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36083
17-03-17 18:46:59.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:46:59.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.838 -07 000000569 INF: FPGA: Recv ZSGSRD 36088
17-03-17 18:46:59.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:46:59.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36081
17-03-17 18:46:59.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.858 -07 000000382 INF: FPGA: Recv ZSGSRD 36078
17-03-17 18:46:59.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.868 -07 000000561 INF: FPGA: Recv ZSGSRD 36077
17-03-17 18:46:59.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36086
17-03-17 18:46:59.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.888 -07 000000476 INF: FPGA: Recv ZSGSRD 36085
17-03-17 18:46:59.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.898 -07 000000561 INF: FPGA: Recv ZSGSRD 36087
17-03-17 18:46:59.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.908 -07 000000475 INF: FPGA: Recv ZSGSRD 36087
17-03-17 18:46:59.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.918 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:46:59.918 -07 000000608 INF: FPGA: Recv ZSGSRD 36082
17-03-17 18:46:59.928 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.928 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:46:59.928 -07 000000593 INF: FPGA: Recv ZPIEZORD 32154
17-03-17 18:46:59.938 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:46:59.938 -07 000000480 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.7 V.
17-03-17 18:46:59.938 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36083 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36084 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36077 (-171.2 uncal um), Max = 36088 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:46:59.938 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36083, posNoise = 5, negNoise = 6
17-03-17 18:46:59.938 -07 000000480 INF: Z Motor: After move to -0.172122, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:46:59.938 -07 000000480 INF: Z Motor: Settle wait time = 1432 ms, measure time = 103 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:46:59.938 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:46:59.988 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 18:46:59.988 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:46:59.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:46:59.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:46:59.988 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:46:59.988 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:46:59.988 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:46:59.988 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:46:59.998 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:46:59.998 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:46:59.998 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:46:59.998 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:00.008 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:47:00.008 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:47:00.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:00.058 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:00.258 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:00.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:00.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:00.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:47:00.298 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:00.298 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:00.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 18:47:00.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 18:47:00.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:00.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:00.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:47:00.398 -07 000000462 INF: Autofocus start
17-03-17 18:47:00.398 -07 000000462 INF: MeasureProfile start
17-03-17 18:47:00.398 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:00.398 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:00.408 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:00.408 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:00.408 -07 000000462 INF: MeasureProfile done
17-03-17 18:47:00.408 -07 000000462 INF: X=64  Z correction [um]=0.2557664
17-03-17 18:47:00.408 -07 000000462 INF: Autofocus finished
17-03-17 18:47:00.538 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.978563,
17-03-17 18:47:00.608 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:00.608 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:00.608 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172128198722296. ----------
17-03-17 18:47:00.608 -07 000000610 INF: Cycle	17	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:00.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36169, sync = True, waitForSettling = True)
17-03-17 18:47:00.618 -07 000000610 INF: Z Motor: Moving to -0.165571 mm, started at -0.172128 mm, distance = 6.56 um
17-03-17 18:47:00.618 -07 000000610 INF: FPGA: Xmit ZDACW 36169\n [Z Motor]
17-03-17 18:47:00.618 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:47:00.628 -07 000000610 INF: FPGA: 'ZDACW 36169' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:00.628 -07 000000478 INF: FPGA: Recv ZDACR 36169
17-03-17 18:47:00.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:00.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.788 -07 000000569 INF: FPGA: Recv ZSGSRD 35067
17-03-17 18:47:00.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.798 -07 000000012 INF: FPGA: Recv ZSGSRD 35064
17-03-17 18:47:00.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.808 -07 000000475 INF: FPGA: Recv ZSGSRD 35064
17-03-17 18:47:00.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.818 -07 000000618 INF: FPGA: Recv ZSGSRD 35062
17-03-17 18:47:00.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.828 -07 000000478 INF: FPGA: Recv ZSGSRD 35061
17-03-17 18:47:00.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.838 -07 000000462 INF: FPGA: Recv ZSGSRD 35068
17-03-17 18:47:00.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.848 -07 000000012 INF: FPGA: Recv ZSGSRD 35065
17-03-17 18:47:00.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.858 -07 000000012 INF: FPGA: Recv ZSGSRD 35064
17-03-17 18:47:00.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.868 -07 000000593 INF: FPGA: Recv ZSGSRD 35062
17-03-17 18:47:00.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:00.878 -07 000000382 INF: FPGA: Recv ZSGSRD 35061
17-03-17 18:47:00.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:00.888 -07 000000382 INF: FPGA: Recv ZPIEZORD 30811
17-03-17 18:47:00.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:00.898 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.519 V. Piezo Error = -9.4 V.
17-03-17 18:47:00.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35064 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35064 (-164.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35061 (-164.7 uncal um), Max = 35068 (-164.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:47:00.898 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35064, posNoise = 4, negNoise = 3
17-03-17 18:47:00.898 -07 000000610 INF: Z Motor: After move to -0.165571, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:00.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:47:00.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:00.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:00.898 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:00.898 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:00.898 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:00.898 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:00.898 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:47:00.898 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:00.898 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:00.898 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:00.898 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:00.898 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:00.908 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:00.908 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:00.908 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:00.908 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:00.908 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:47:00.908 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:47:00.918 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:47:00.918 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:47:00.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36345 150\n [Camera]
17-03-17 18:47:01.118 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:01.508 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:01.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:01.518 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:01.518 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:01.518 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:47:01.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:01.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:01.518 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:01.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:01.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:47:01.628 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:01.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:01.708 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36345 780
17-03-17 18:47:01.858 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:01.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:47:01.888 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:47:01.888 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:01.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:47:01.898 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:47:01.898 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:01.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:01.898 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:47:01.898 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:01.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:47:02.048 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:02.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:02.048 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:02.048 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:02.048 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:47:02.048 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:02.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:02.048 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:02.048 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:02.048 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:47:02.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:47:02.238 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:02.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36345 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-17 18:47:02.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:47:02.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:47:02.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:02.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:47:02.438 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:47:02.438 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:02.448 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:02.448 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:47:02.448 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:47:02.448 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:47:02.448 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:47:02.488 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:47:02.488 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:47:02.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:47:02.538 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:47:02.538 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:47:02.538 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 18:47:02.548 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:02.548 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:47:03.048 -07 000000012 INF: FPGA: Recv EMIN
17-03-17 18:47:03.048 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:47:03.048 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:47:03.048 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 18:47:03.058 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:03.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:03.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165581926549841. ------
17-03-17 18:47:03.058 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14014 mm
17-03-17 18:47:03.058 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:03.058 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:03.058 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:47:03.068 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 18:47:03.068 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:03.068 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:47:03.068 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:03.068 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30613, sync = True, waitForSettling = False)
17-03-17 18:47:03.068 -07 000000627 INF: Z Motor: Moving to -0.140137 mm, started at -0.165582 mm, distance = 25.44 um
17-03-17 18:47:03.068 -07 000000486 INF: FPGA: Recv YRDPOS 153259
17-03-17 18:47:03.078 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:03.078 -07 000000627 INF: FPGA: Xmit ZDACW 30613\n [Z Motor]
17-03-17 18:47:03.078 -07 000000382 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:03.078 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:47:03.078 -07 000000382 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:47:03.078 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:47:03.088 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:03.088 -07 000000627 INF: FPGA: 'ZDACW 30613' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:47:03.098 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:47:03.108 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:03.108 -07 000000626 INF: FPGA: Recv ZDACR 30613
17-03-17 18:47:03.118 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:03.118 -07 000000627 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:47:03.288 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:03.288 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:47:04.718 -07 000000626 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 18:47:04.718 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 18:47:04.718 -07 000000382 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:47:04.718 -07 000000382 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:47:04.718 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 18:47:05.898 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.981281,
17-03-17 18:47:06.628 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:06.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:07.568 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:07.568 -07 000000486 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:47:07.578 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.578 -07 000000382 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:07.598 -07 000000382 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:07.598 -07 000000382 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:47:07.598 -07 000000382 INF: Y Motor: Moved to 59.9116 after 4537 ms
17-03-17 18:47:07.608 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140137 mm (DAC = 30613)
17-03-17 18:47:07.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.608 -07 000000627 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:47:07.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.618 -07 000000429 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:47:07.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.628 -07 000000627 INF: FPGA: Recv ZSGSRD 31106
17-03-17 18:47:07.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.638 -07 000000382 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:47:07.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.648 -07 000000626 INF: FPGA: Recv ZSGSRD 31106
17-03-17 18:47:07.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.658 -07 000000382 INF: FPGA: Recv ZSGSRD 31095
17-03-17 18:47:07.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.668 -07 000000626 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:47:07.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.678 -07 000000415 INF: FPGA: Recv ZSGSRD 31109
17-03-17 18:47:07.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.688 -07 000000012 INF: FPGA: Recv ZSGSRD 31105
17-03-17 18:47:07.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:07.698 -07 000000501 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:47:07.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.708 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:07.708 -07 000000415 INF: FPGA: Recv ZPIEZORD 26633
17-03-17 18:47:07.718 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:07.718 -07 000000593 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -9.8 V.
17-03-17 18:47:07.718 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31104 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31104 (-139.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31095 (-139.3 uncal um), Max = 31109 (-139.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:47:07.718 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31104, posNoise = 5, negNoise = 9
17-03-17 18:47:07.718 -07 000000593 INF: Z Motor: After move to -0.140137, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:07.718 -07 000000593 INF: Z Motor: Settle wait time = 4539 ms, measure time = 110 ms (allowed 150 ms), total time = 4649 ms
17-03-17 18:47:07.718 -07 000000593 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:07.758 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4693 ms
17-03-17 18:47:07.758 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:07.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:07.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:07.758 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:07.758 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:07.758 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:07.758 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:07.758 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:07.758 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:47:07.788 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:47:07.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:07.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:07.788 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:07.798 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-17 18:47:07.798 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 18:47:07.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:07.848 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:08.048 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:08.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:08.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:08.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 18:47:08.088 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:08.088 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:08.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:47:08.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:47:08.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:08.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:47:08.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:47:08.288 -07 000000486 INF: Image SNR check: start
17-03-17 18:47:08.288 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:08.298 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=70.50]
17-03-17 18:47:08.308 -07 000000486 INF: Autofocus start
17-03-17 18:47:08.308 -07 000000486 INF: MeasureProfile start
17-03-17 18:47:08.318 -07 000000486 INF: MeasureProfile done
17-03-17 18:47:08.318 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:47:08.318 -07 000000486 INF: Autofocus finished
17-03-17 18:47:08.318 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:08.318 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 23 ms to get response, and 29 ms overall
17-03-17 18:47:08.318 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:08.518 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:08.518 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:47:08.528 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140142046468468. ----------
17-03-17 18:47:08.528 -07 000000610 INF: Cycle	17	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:08.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29137, sync = True, waitForSettling = True)
17-03-17 18:47:08.528 -07 000000610 INF: Z Motor: Moving to -0.133381 mm, started at -0.140142 mm, distance = 6.76 um
17-03-17 18:47:08.528 -07 000000610 INF: FPGA: Xmit ZDACW 29137\n [Z Motor]
17-03-17 18:47:08.528 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:47:08.538 -07 000000610 INF: FPGA: 'ZDACW 29137' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:47:08.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:08.538 -07 000000627 INF: FPGA: Recv ZDACR 29137
17-03-17 18:47:08.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.698 -07 000000486 INF: FPGA: Recv ZSGSRD 30050
17-03-17 18:47:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.708 -07 000000486 INF: FPGA: Recv ZSGSRD 30053
17-03-17 18:47:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.718 -07 000000627 INF: FPGA: Recv ZSGSRD 30054
17-03-17 18:47:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.728 -07 000000627 INF: FPGA: Recv ZSGSRD 30051
17-03-17 18:47:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.738 -07 000000627 INF: FPGA: Recv ZSGSRD 30053
17-03-17 18:47:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.748 -07 000000486 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:47:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.758 -07 000000627 INF: FPGA: Recv ZSGSRD 30055
17-03-17 18:47:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.768 -07 000000627 INF: FPGA: Recv ZSGSRD 30054
17-03-17 18:47:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.778 -07 000000486 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:47:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:08.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30050
17-03-17 18:47:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:08.798 -07 000000627 INF: FPGA: Recv ZPIEZORD 25543
17-03-17 18:47:08.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:08.808 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.9 V.
17-03-17 18:47:08.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30051 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30052 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30046 (-132.6 uncal um), Max = 30055 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:47:08.808 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30051, posNoise = 4, negNoise = 5
17-03-17 18:47:08.808 -07 000000610 INF: Z Motor: After move to -0.133381, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:08.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:47:08.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:08.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:08.808 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:08.808 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:08.818 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:08.818 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:08.818 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:08.818 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:08.818 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:08.818 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:08.818 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:08.818 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:47:08.818 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:08.818 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:08.828 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:47:08.828 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:47:08.838 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:47:08.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:08.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:47:08.838 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:08.848 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:47:08.848 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 18:47:08.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29314 150\n [Camera]
17-03-17 18:47:09.048 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:09.448 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:09.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:09.448 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:09.448 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:09.448 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:47:09.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:09.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:09.448 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:09.448 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:09.448 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:47:09.638 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29314 780
17-03-17 18:47:09.788 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:09.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:47:09.828 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:47:09.828 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:09.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:09.828 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:47:09.828 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:47:09.828 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:09.828 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:09.828 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:47:09.838 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:47:09.978 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:09.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:09.978 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:10.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:10.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:10.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:10.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:47:10.108 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:10.118 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:10.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:47:10.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:47:10.168 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:10.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29314 150' command took 2 ms to send, 1315 ms to get response, and 1319 ms overall
17-03-17 18:47:10.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:10.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133377351083194. ------
17-03-17 18:47:10.178 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13987 mm
17-03-17 18:47:10.178 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:10.178 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:10.178 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:10.178 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30554, sync = True, waitForSettling = False)
17-03-17 18:47:10.178 -07 000000501 INF: Z Motor: Moving to -0.139867 mm, started at -0.133377 mm, distance = -6.49 um
17-03-17 18:47:10.178 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:47:10.178 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:47:10.188 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:10.188 -07 000000501 INF: FPGA: Xmit ZDACW 30554\n [Z Motor]
17-03-17 18:47:10.188 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:47:10.198 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:10.198 -07 000000501 INF: FPGA: 'ZDACW 30554' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:47:10.198 -07 000000478 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:47:10.208 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:10.208 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:47:10.208 -07 000000626 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:10.208 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:10.208 -07 000000626 INF: Y Motor: Moving 1330 steps2
17-03-17 18:47:10.218 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:10.218 -07 000000415 INF: FPGA: Recv ZDACR 30554
17-03-17 18:47:10.228 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:10.228 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:10.228 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 18:47:10.408 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:10.408 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:47:10.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:47:10.508 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:47:10.508 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:10.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:47:10.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:47:10.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:10.508 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:10.518 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:10.518 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-17 18:47:10.518 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:47:10.598 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:47:10.598 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:47:10.628 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:10.628 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:47:10.638 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:10.638 -07 000000626 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:10.638 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:47:10.638 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:47:11.258 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.985358,
17-03-17 18:47:11.588 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:11.588 -07 000000478 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:47:11.598 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:11.598 -07 000000626 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:11.618 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:11.618 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:47:11.618 -07 000000626 INF: Y Motor: Moved to 60.7339 after 1437 ms (table move)
17-03-17 18:47:11.618 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139867 mm (DAC = 30554)
17-03-17 18:47:11.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.618 -07 000000626 INF: FPGA: Recv ZSGSRD 31065
17-03-17 18:47:11.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:11.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.628 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:11.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:11.628 -07 000000618 INF: FPGA: Recv ZSGSRD 31055
17-03-17 18:47:11.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.638 -07 000000618 INF: FPGA: Recv ZSGSRD 31058
17-03-17 18:47:11.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.648 -07 000000618 INF: FPGA: Recv ZSGSRD 31059
17-03-17 18:47:11.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.658 -07 000000618 INF: FPGA: Recv ZSGSRD 31066
17-03-17 18:47:11.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.668 -07 000000618 INF: FPGA: Recv ZSGSRD 31067
17-03-17 18:47:11.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.678 -07 000000478 INF: FPGA: Recv ZSGSRD 31065
17-03-17 18:47:11.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.688 -07 000000462 INF: FPGA: Recv ZSGSRD 31054
17-03-17 18:47:11.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.698 -07 000000462 INF: FPGA: Recv ZSGSRD 31060
17-03-17 18:47:11.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:11.708 -07 000000462 INF: FPGA: Recv ZSGSRD 31063
17-03-17 18:47:11.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:11.718 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:12.728 -07 000000415 INF: FPGA: Recv ZPIEZORD 26910
17-03-17 18:47:12.728 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 1000 ms to get response, and 1010 ms overall
17-03-17 18:47:12.728 -07 000000429 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.662 V. Piezo Error = -9.1 V.
17-03-17 18:47:12.728 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31061 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31062 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31054 (-139.0 uncal um), Max = 31067 (-139.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:47:12.728 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31061, posNoise = 6, negNoise = 7
17-03-17 18:47:12.728 -07 000000429 INF: Z Motor: After move to -0.139867, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:12.728 -07 000000429 INF: Z Motor: Settle wait time = 1440 ms, measure time = 1107 ms (allowed 150 ms), total time = 2547 ms
17-03-17 18:47:12.728 -07 000000429 INF: Z Motor: Warning: Actual position measuring time = 1107 ms, longer than max expected time of 150 ms
17-03-17 18:47:12.728 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2551 ms
17-03-17 18:47:12.728 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:12.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:12.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:12.728 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:12.728 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:12.728 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:12.728 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:12.728 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:47:12.728 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:12.738 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:12.738 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:12.748 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:47:12.748 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:47:12.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:12.798 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:47:12.998 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:47:12.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:47:12.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:12.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 18:47:13.038 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:13.038 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:13.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:47:13.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:47:13.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:13.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:13.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:47:13.138 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:13.138 -07 000000480 INF: Autofocus start
17-03-17 18:47:13.138 -07 000000480 INF: MeasureProfile start
17-03-17 18:47:13.138 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:13.148 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:13.148 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:13.148 -07 000000480 INF: MeasureProfile done
17-03-17 18:47:13.148 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:47:13.148 -07 000000480 INF: Autofocus finished
17-03-17 18:47:13.348 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:13.348 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:13.348 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.139865805346372. ----------
17-03-17 18:47:13.348 -07 000000610 INF: Cycle	17	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:13.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29061, sync = True, waitForSettling = True)
17-03-17 18:47:13.358 -07 000000610 INF: Z Motor: Moving to -0.133033 mm, started at -0.139866 mm, distance = 6.83 um
17-03-17 18:47:13.358 -07 000000610 INF: FPGA: Xmit ZDACW 29061\n [Z Motor]
17-03-17 18:47:13.358 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:47:13.368 -07 000000610 INF: FPGA: 'ZDACW 29061' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:13.368 -07 000000462 INF: FPGA: Recv ZDACR 29061
17-03-17 18:47:13.378 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.528 -07 000000429 INF: FPGA: Recv ZSGSRD 30002
17-03-17 18:47:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.538 -07 000000608 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:47:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.548 -07 000000593 INF: FPGA: Recv ZSGSRD 30001
17-03-17 18:47:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:47:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.568 -07 000000415 INF: FPGA: Recv ZSGSRD 29998
17-03-17 18:47:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.578 -07 000000480 INF: FPGA: Recv ZSGSRD 30001
17-03-17 18:47:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.588 -07 000000501 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:47:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.598 -07 000000480 INF: FPGA: Recv ZSGSRD 30002
17-03-17 18:47:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.608 -07 000000626 INF: FPGA: Recv ZSGSRD 29994
17-03-17 18:47:13.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:13.618 -07 000000608 INF: FPGA: Recv ZSGSRD 29997
17-03-17 18:47:13.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:13.628 -07 000000501 INF: FPGA: Recv ZPIEZORD 25503
17-03-17 18:47:13.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:13.638 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.9 V.
17-03-17 18:47:13.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29998 (-132.3 uncal um), Error = 0.8 uncal um, Median = 29998 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29993 (-132.2 uncal um), Max = 30002 (-132.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:47:13.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29998, posNoise = 4, negNoise = 5
17-03-17 18:47:13.638 -07 000000610 INF: Z Motor: After move to -0.133033, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:13.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:47:13.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:13.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:13.638 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:13.638 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:13.638 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:13.638 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:13.638 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:13.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:13.638 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:13.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:13.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:13.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:13.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:13.638 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:13.648 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:13.648 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:13.658 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:47:13.658 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:47:13.658 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:47:13.658 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:47:13.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29238 150\n [Camera]
17-03-17 18:47:13.858 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:14.258 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:14.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:14.258 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:14.258 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:14.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:14.258 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:14.258 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:14.258 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-17 18:47:14.268 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:14.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-17 18:47:14.448 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29238 780
17-03-17 18:47:14.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:14.658 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:47:14.658 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:47:14.658 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:14.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:47:14.658 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:47:14.658 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:14.658 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:14.658 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:47:14.668 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:14.668 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:47:14.788 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:47:14.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:47:14.788 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:14.898 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:47:14.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:47:14.898 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:14.908 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:14.908 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) start.
17-03-17 18:47:14.908 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:14.908 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:47:14.978 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:14.978 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:14.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29238 150' command took 2 ms to send, 1307 ms to get response, and 1319 ms overall
17-03-17 18:47:14.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:14.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.13303686783968. ------
17-03-17 18:47:14.988 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:14.988 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13977 mm
17-03-17 18:47:14.988 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:14.988 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:47:14.988 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:47:14.988 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30532, sync = True, waitForSettling = False)
17-03-17 18:47:14.988 -07 000000569 INF: Z Motor: Moving to -0.139767 mm, started at -0.133037 mm, distance = -6.73 um
17-03-17 18:47:14.988 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:14.998 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:14.998 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:14.998 -07 000000480 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:47:15.008 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:47:15.008 -07 000000501 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:15.008 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:15.008 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:47:15.008 -07 000000569 INF: FPGA: Xmit ZDACW 30532\n [Z Motor]
17-03-17 18:47:15.008 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:47:15.018 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:15.018 -07 000000569 INF: FPGA: 'ZDACW 30532' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:47:15.028 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:15.038 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:15.038 -07 000000626 INF: FPGA: Recv ZDACR 30532
17-03-17 18:47:15.048 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:47:15.048 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:47:15.218 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:15.218 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 18:47:15.308 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:47:15.308 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:47:15.308 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:15.308 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:47:15.308 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:47:15.308 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:15.308 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:15.308 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:15.308 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 18:47:15.318 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:47:15.398 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:47:15.398 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:47:15.438 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:15.438 -07 000000480 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:47:15.448 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:15.448 -07 000000501 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:15.448 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:47:15.448 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 18:47:16.398 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:16.398 -07 000000415 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:47:16.408 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:16.408 -07 000000501 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:16.428 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:16.428 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:47:16.428 -07 000000501 INF: Y Motor: Moved to 61.5645 after 1434 ms (table move)
17-03-17 18:47:16.428 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139767 mm (DAC = 30532)
17-03-17 18:47:16.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.428 -07 000000415 INF: FPGA: Recv ZSGSRD 31043
17-03-17 18:47:16.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:16.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.438 -07 000000626 INF: FPGA: Recv ZSGSRD 31035
17-03-17 18:47:16.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.448 -07 000000593 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:47:16.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.458 -07 000000608 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:47:16.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.468 -07 000000626 INF: FPGA: Recv ZSGSRD 31043
17-03-17 18:47:16.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.478 -07 000000626 INF: FPGA: Recv ZSGSRD 31055
17-03-17 18:47:16.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.488 -07 000000626 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:47:16.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.498 -07 000000626 INF: FPGA: Recv ZSGSRD 31053
17-03-17 18:47:16.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.508 -07 000000415 INF: FPGA: Recv ZSGSRD 31038
17-03-17 18:47:16.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:16.518 -07 000000608 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:47:16.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.528 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:16.528 -07 000000608 INF: FPGA: Recv ZPIEZORD 26919
17-03-17 18:47:16.538 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:16.538 -07 000000462 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.659 V. Piezo Error = -9.1 V.
17-03-17 18:47:16.538 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31045 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31046 (-139.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 31035 (-138.9 uncal um), Max = 31055 (-139.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:47:16.538 -07 000000462 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31045, posNoise = 10, negNoise = 10
17-03-17 18:47:16.538 -07 000000462 INF: Z Motor: After move to -0.139767, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:16.538 -07 000000462 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:47:16.538 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:16.588 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:47:16.588 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:16.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:16.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:16.588 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:16.588 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:16.598 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:16.598 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:16.598 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:16.598 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:16.598 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:16.598 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:16.608 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:47:16.608 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:47:16.618 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.978563,
17-03-17 18:47:16.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:16.628 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:16.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:16.668 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:16.868 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:16.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:16.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:16.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) start.
17-03-17 18:47:16.908 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:16.908 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:16.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 300 ms overall
17-03-17 18:47:16.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:47:16.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:16.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:47:16.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:47:17.008 -07 000000501 INF: Autofocus start
17-03-17 18:47:17.008 -07 000000501 INF: MeasureProfile start
17-03-17 18:47:17.008 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:17.008 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:17.018 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:17.018 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:17.028 -07 000000501 INF: MeasureProfile done
17-03-17 18:47:17.028 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:47:17.028 -07 000000501 INF: Autofocus finished
17-03-17 18:47:17.218 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:17.218 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:17.228 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139763017952104. ----------
17-03-17 18:47:17.228 -07 000000610 INF: Cycle	17	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:17.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29039, sync = True, waitForSettling = True)
17-03-17 18:47:17.228 -07 000000610 INF: Z Motor: Moving to -0.132932 mm, started at -0.139763 mm, distance = 6.83 um
17-03-17 18:47:17.228 -07 000000610 INF: FPGA: Xmit ZDACW 29039\n [Z Motor]
17-03-17 18:47:17.228 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:47:17.238 -07 000000610 INF: FPGA: 'ZDACW 29039' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:47:17.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:17.238 -07 000000415 INF: FPGA: Recv ZDACR 29039
17-03-17 18:47:17.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.398 -07 000000475 INF: FPGA: Recv ZSGSRD 29988
17-03-17 18:47:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.408 -07 000000478 INF: FPGA: Recv ZSGSRD 29987
17-03-17 18:47:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:47:17.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.428 -07 000000478 INF: FPGA: Recv ZSGSRD 29978
17-03-17 18:47:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.438 -07 000000462 INF: FPGA: Recv ZSGSRD 29981
17-03-17 18:47:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.448 -07 000000475 INF: FPGA: Recv ZSGSRD 29986
17-03-17 18:47:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.458 -07 000000480 INF: FPGA: Recv ZSGSRD 29982
17-03-17 18:47:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.468 -07 000000478 INF: FPGA: Recv ZSGSRD 29982
17-03-17 18:47:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.478 -07 000000462 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:47:17.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:17.488 -07 000000475 INF: FPGA: Recv ZSGSRD 29985
17-03-17 18:47:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:17.498 -07 000000480 INF: FPGA: Recv ZPIEZORD 25527
17-03-17 18:47:17.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:17.508 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.8 V.
17-03-17 18:47:17.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29984 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29984 (-132.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29978 (-132.1 uncal um), Max = 29988 (-132.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:47:17.508 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29984, posNoise = 4, negNoise = 6
17-03-17 18:47:17.508 -07 000000610 INF: Z Motor: After move to -0.132932, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:17.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:47:17.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:17.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:17.508 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:17.508 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:17.508 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:17.508 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:17.508 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:17.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:17.508 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:17.508 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:17.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:17.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:17.518 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:47:17.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:47:17.518 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:17.518 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:17.528 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:47:17.528 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:47:17.528 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:47:17.528 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:47:17.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29216 150\n [Camera]
17-03-17 18:47:17.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:18.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:18.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:18.128 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:18.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:18.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:18.128 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:18.128 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:18.128 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:47:18.128 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:18.128 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:47:18.318 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29216 780
17-03-17 18:47:18.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:18.518 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:47:18.518 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:47:18.518 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:47:18.518 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:18.518 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:47:18.518 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:18.528 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:18.528 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:18.528 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:47:18.538 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:47:18.658 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:18.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:18.658 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:18.758 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:18.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:18.758 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:18.768 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:18.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:47:18.768 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:18.768 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:47:18.848 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:18.848 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:18.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29216 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-17 18:47:18.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:18.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132946928869696. ------
17-03-17 18:47:18.858 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:18.858 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13932 mm
17-03-17 18:47:18.858 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:18.858 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:18.858 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:47:18.858 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:47:18.858 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30435, sync = True, waitForSettling = False)
17-03-17 18:47:18.858 -07 000000569 INF: Z Motor: Moving to -0.139322 mm, started at -0.132947 mm, distance = -6.38 um
17-03-17 18:47:18.868 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:18.868 -07 000000569 INF: FPGA: Xmit ZDACW 30435\n [Z Motor]
17-03-17 18:47:18.868 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:47:18.878 -07 000000569 INF: FPGA: 'ZDACW 30435' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:47:18.878 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:18.878 -07 000000501 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:47:18.888 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:18.888 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:47:18.888 -07 000000462 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:18.888 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:18.888 -07 000000462 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:47:18.898 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:18.898 -07 000000501 INF: FPGA: Recv ZDACR 30435
17-03-17 18:47:18.908 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:18.908 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:18.908 -07 000000569 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:47:19.088 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:19.088 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:47:19.158 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:47:19.158 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:47:19.158 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:19.158 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:47:19.158 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:47:19.158 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:19.158 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:19.168 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:19.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 18:47:19.168 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:47:19.278 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:47:19.278 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:47:19.318 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:19.318 -07 000000478 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:47:19.328 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:19.328 -07 000000462 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:19.328 -07 000000462 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:47:19.328 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.133 mm/sec
17-03-17 18:47:20.278 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:20.278 -07 000000593 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:47:20.288 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:20.288 -07 000000462 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:20.298 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:20.298 -07 000000462 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:47:20.298 -07 000000462 INF: Y Motor: Moved to 62.3960 after 1444 ms (table move)
17-03-17 18:47:20.308 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139322 mm (DAC = 30435)
17-03-17 18:47:20.308 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.308 -07 000000569 INF: FPGA: Recv ZSGSRD 30977
17-03-17 18:47:20.318 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:20.318 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.318 -07 000000475 INF: FPGA: Recv ZSGSRD 30977
17-03-17 18:47:20.328 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.328 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.328 -07 000000569 INF: FPGA: Recv ZSGSRD 30982
17-03-17 18:47:20.338 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.338 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.338 -07 000000569 INF: FPGA: Recv ZSGSRD 30979
17-03-17 18:47:20.348 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.348 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.348 -07 000000478 INF: FPGA: Recv ZSGSRD 30984
17-03-17 18:47:20.358 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:20.358 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.358 -07 000000593 INF: FPGA: Recv ZSGSRD 30981
17-03-17 18:47:20.368 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.368 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.368 -07 000000462 INF: FPGA: Recv ZSGSRD 30972
17-03-17 18:47:20.378 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.378 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.378 -07 000000475 INF: FPGA: Recv ZSGSRD 30974
17-03-17 18:47:20.388 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.388 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30973
17-03-17 18:47:20.398 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.398 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:20.398 -07 000000478 INF: FPGA: Recv ZSGSRD 30972
17-03-17 18:47:20.408 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.408 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:20.408 -07 000000569 INF: FPGA: Recv ZPIEZORD 26818
17-03-17 18:47:20.418 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:20.418 -07 000000480 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.2 V.
17-03-17 18:47:20.418 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30977 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30977 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30972 (-138.5 uncal um), Max = 30984 (-138.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:47:20.418 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30977, posNoise = 7, negNoise = 5
17-03-17 18:47:20.418 -07 000000480 INF: Z Motor: After move to -0.139322, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:20.418 -07 000000480 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:47:20.418 -07 000000480 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:20.468 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 18:47:20.468 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:20.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:20.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:20.468 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:20.468 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:20.468 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:20.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:20.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:47:20.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:20.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:20.478 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:20.488 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:47:20.488 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:47:20.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:20.538 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:20.738 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:20.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:20.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:20.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:47:20.778 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:20.778 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:20.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:47:20.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:47:20.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:20.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:20.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:47:20.878 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:20.878 -07 000000480 INF: Autofocus start
17-03-17 18:47:20.878 -07 000000480 INF: MeasureProfile start
17-03-17 18:47:20.878 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:20.888 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:20.888 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:20.888 -07 000000480 INF: MeasureProfile done
17-03-17 18:47:20.888 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:47:20.888 -07 000000480 INF: Autofocus finished
17-03-17 18:47:21.088 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:21.088 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:21.088 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139326171526464. ----------
17-03-17 18:47:21.088 -07 000000610 INF: Cycle	17	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:21.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28959, sync = True, waitForSettling = True)
17-03-17 18:47:21.098 -07 000000610 INF: Z Motor: Moving to -0.132566 mm, started at -0.139326 mm, distance = 6.76 um
17-03-17 18:47:21.098 -07 000000610 INF: FPGA: Xmit ZDACW 28959\n [Z Motor]
17-03-17 18:47:21.098 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:47:21.108 -07 000000610 INF: FPGA: 'ZDACW 28959' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:21.108 -07 000000462 INF: FPGA: Recv ZDACR 28959
17-03-17 18:47:21.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:21.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.268 -07 000000478 INF: FPGA: Recv ZSGSRD 29928
17-03-17 18:47:21.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:21.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.278 -07 000000478 INF: FPGA: Recv ZSGSRD 29926
17-03-17 18:47:21.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.288 -07 000000627 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:47:21.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.298 -07 000000627 INF: FPGA: Recv ZSGSRD 29920
17-03-17 18:47:21.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.308 -07 000000627 INF: FPGA: Recv ZSGSRD 29920
17-03-17 18:47:21.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.318 -07 000000462 INF: FPGA: Recv ZSGSRD 29923
17-03-17 18:47:21.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.328 -07 000000462 INF: FPGA: Recv ZSGSRD 29929
17-03-17 18:47:21.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.338 -07 000000462 INF: FPGA: Recv ZSGSRD 29924
17-03-17 18:47:21.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.348 -07 000000462 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:47:21.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:21.358 -07 000000462 INF: FPGA: Recv ZSGSRD 29926
17-03-17 18:47:21.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:21.368 -07 000000462 INF: FPGA: Recv ZPIEZORD 25476
17-03-17 18:47:21.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:21.378 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.8 V.
17-03-17 18:47:21.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29925 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29925 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29920 (-131.8 uncal um), Max = 29929 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:47:21.378 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29925, posNoise = 4, negNoise = 5
17-03-17 18:47:21.378 -07 000000610 INF: Z Motor: After move to -0.132566, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:21.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:47:21.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:21.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:21.378 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:21.378 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:21.378 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:21.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:21.378 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:21.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:21.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:47:21.378 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:21.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 18:47:21.378 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:21.388 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:21.388 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:21.388 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:21.388 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:21.398 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:47:21.398 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:47:21.398 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:47:21.398 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:47:21.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29136 150\n [Camera]
17-03-17 18:47:21.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:21.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:21.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:21.988 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.012614,
17-03-17 18:47:21.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:47:21.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:47:21.998 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:22.008 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:47:22.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:47:22.008 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:22.008 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:22.008 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:47:22.008 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:22.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:47:22.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29136 782
17-03-17 18:47:22.338 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:22.388 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:47:22.388 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:47:22.388 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:22.398 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:22.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:47:22.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:47:22.398 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:22.408 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:47:22.528 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 129 ms.
17-03-17 18:47:22.528 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 18:47:22.528 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:22.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:22.528 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:22.538 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:22.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:22.538 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:22.548 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:22.548 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:47:22.548 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:22.548 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:47:22.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:22.728 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:22.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29136 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-17 18:47:22.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:22.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132567900353332. ------
17-03-17 18:47:22.728 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:22.728 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13926 mm
17-03-17 18:47:22.728 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:22.738 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30422, sync = True, waitForSettling = False)
17-03-17 18:47:22.738 -07 000000569 INF: Z Motor: Moving to -0.139263 mm, started at -0.132568 mm, distance = -6.70 um
17-03-17 18:47:22.738 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:22.738 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:47:22.738 -07 000000561 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:47:22.738 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 18:47:22.738 -07 000000569 INF: FPGA: Xmit ZDACW 30422\n [Z Motor]
17-03-17 18:47:22.738 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:47:22.748 -07 000000569 INF: FPGA: 'ZDACW 30422' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:22.748 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:22.748 -07 000000608 INF: FPGA: Recv ZDACR 30422
17-03-17 18:47:22.758 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:22.758 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:22.758 -07 000000569 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 18:47:22.768 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:22.768 -07 000000478 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:47:22.778 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 18:47:22.778 -07 000000561 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:22.778 -07 000000561 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:22.778 -07 000000561 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:47:22.778 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:22.928 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:47:22.928 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:47:22.928 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:22.928 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:47:22.928 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:47:22.928 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:22.928 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:22.928 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:47:22.928 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:22.938 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:47:22.958 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:22.958 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 18:47:23.158 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:47:23.158 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 18:47:23.188 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:23.188 -07 000000382 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:47:23.198 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:23.198 -07 000000561 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:23.198 -07 000000561 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:47:23.198 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.213 mm/sec
17-03-17 18:47:24.148 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:24.148 -07 000000486 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:47:24.158 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:24.158 -07 000000561 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:24.178 -07 000000561 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:24.178 -07 000000561 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:47:24.178 -07 000000561 INF: Y Motor: Moved to 63.2251 after 1436 ms (table move)
17-03-17 18:47:24.178 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139263 mm (DAC = 30422)
17-03-17 18:47:24.178 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.178 -07 000000462 INF: FPGA: Recv ZSGSRD 30967
17-03-17 18:47:24.188 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:24.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.188 -07 000000012 INF: FPGA: Recv ZSGSRD 30963
17-03-17 18:47:24.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.198 -07 000000486 INF: FPGA: Recv ZSGSRD 30962
17-03-17 18:47:24.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:47:24.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.218 -07 000000382 INF: FPGA: Recv ZSGSRD 30961
17-03-17 18:47:24.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.228 -07 000000486 INF: FPGA: Recv ZSGSRD 30973
17-03-17 18:47:24.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.238 -07 000000480 INF: FPGA: Recv ZSGSRD 30971
17-03-17 18:47:24.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.248 -07 000000608 INF: FPGA: Recv ZSGSRD 30971
17-03-17 18:47:24.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.258 -07 000000012 INF: FPGA: Recv ZSGSRD 30964
17-03-17 18:47:24.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:24.268 -07 000000012 INF: FPGA: Recv ZSGSRD 30973
17-03-17 18:47:24.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.278 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:24.278 -07 000000608 INF: FPGA: Recv ZPIEZORD 26858
17-03-17 18:47:24.288 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.288 -07 000000475 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -9.0 V.
17-03-17 18:47:24.288 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30966 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30966 (-138.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30953 (-138.4 uncal um), Max = 30973 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 18:47:24.288 -07 000000475 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30966, posNoise = 7, negNoise = 13
17-03-17 18:47:24.288 -07 000000475 INF: Z Motor: After move to -0.139263, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:24.288 -07 000000475 INF: Z Motor: Settle wait time = 1441 ms, measure time = 106 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:47:24.288 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:24.338 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:47:24.338 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:24.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:24.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:24.338 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:24.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:24.338 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:24.338 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:24.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:24.338 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:24.348 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:24.348 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:24.348 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:47:24.348 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:47:24.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:24.398 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:24.598 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:24.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:24.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:24.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 18:47:24.638 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:24.638 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:24.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:47:24.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:47:24.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:24.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:24.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:47:24.738 -07 000000462 INF: Autofocus start
17-03-17 18:47:24.738 -07 000000462 INF: MeasureProfile start
17-03-17 18:47:24.738 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:24.738 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:24.748 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:24.748 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:24.748 -07 000000462 INF: MeasureProfile done
17-03-17 18:47:24.748 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:47:24.748 -07 000000462 INF: Autofocus finished
17-03-17 18:47:24.948 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:24.948 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:24.948 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139255505192905. ----------
17-03-17 18:47:24.958 -07 000000610 INF: Cycle	17	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:24.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28946, sync = True, waitForSettling = True)
17-03-17 18:47:24.958 -07 000000610 INF: Z Motor: Moving to -0.132506 mm, started at -0.139256 mm, distance = 6.75 um
17-03-17 18:47:24.958 -07 000000610 INF: FPGA: Xmit ZDACW 28946\n [Z Motor]
17-03-17 18:47:24.958 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:47:24.968 -07 000000610 INF: FPGA: 'ZDACW 28946' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:47:24.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:24.968 -07 000000012 INF: FPGA: Recv ZDACR 28946
17-03-17 18:47:24.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:24.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.128 -07 000000012 INF: FPGA: Recv ZSGSRD 29912
17-03-17 18:47:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.138 -07 000000475 INF: FPGA: Recv ZSGSRD 29923
17-03-17 18:47:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.148 -07 000000012 INF: FPGA: Recv ZSGSRD 29921
17-03-17 18:47:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.158 -07 000000608 INF: FPGA: Recv ZSGSRD 29913
17-03-17 18:47:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.168 -07 000000475 INF: FPGA: Recv ZSGSRD 29922
17-03-17 18:47:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.178 -07 000000462 INF: FPGA: Recv ZSGSRD 29917
17-03-17 18:47:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.188 -07 000000475 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:47:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.198 -07 000000012 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:47:25.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.208 -07 000000608 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:47:25.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:25.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:47:25.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:25.228 -07 000000012 INF: FPGA: Recv ZPIEZORD 25465
17-03-17 18:47:25.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:25.238 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.8 V.
17-03-17 18:47:25.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29917 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29918 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29912 (-131.7 uncal um), Max = 29923 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:47:25.238 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29917, posNoise = 6, negNoise = 5
17-03-17 18:47:25.238 -07 000000610 INF: Z Motor: After move to -0.132506, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:25.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:47:25.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:25.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:25.238 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:25.238 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:25.238 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:25.238 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:25.238 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:25.238 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:25.238 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:25.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:25.238 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:25.238 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:25.248 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:25.248 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:25.248 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:47:25.248 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:25.258 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:47:25.258 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:47:25.258 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:47:25.258 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:47:25.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29123 150\n [Camera]
17-03-17 18:47:25.458 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:25.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:25.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:25.858 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:25.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:25.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:25.858 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:25.858 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:25.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) start.
17-03-17 18:47:25.858 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:25.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:47:26.048 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29123 780
17-03-17 18:47:26.198 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:47:26.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 18:47:26.228 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:47:26.228 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:26.238 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:26.238 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:47:26.238 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:47:26.238 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:26.238 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:26.238 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:47:26.238 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:47:26.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:26.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:26.388 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:26.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:26.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:26.388 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:26.388 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:26.388 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:47:26.388 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:26.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:47:26.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:47:26.578 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:26.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29123 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-17 18:47:26.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:26.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132516506656198. ------
17-03-17 18:47:26.588 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13904 mm
17-03-17 18:47:26.588 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:26.588 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:26.588 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:47:26.588 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:47:26.588 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:26.588 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30374, sync = True, waitForSettling = False)
17-03-17 18:47:26.588 -07 000000475 INF: Z Motor: Moving to -0.139043 mm, started at -0.132517 mm, distance = -6.53 um
17-03-17 18:47:26.598 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:26.598 -07 000000475 INF: FPGA: Xmit ZDACW 30374\n [Z Motor]
17-03-17 18:47:26.598 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:47:26.608 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:26.608 -07 000000475 INF: FPGA: 'ZDACW 30374' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:47:26.608 -07 000000561 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:47:26.618 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:26.618 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:47:26.618 -07 000000424 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:26.618 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:26.618 -07 000000424 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:47:26.628 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:26.628 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:26.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:26.628 -07 000000012 INF: FPGA: Recv ZDACR 30374
17-03-17 18:47:26.638 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:26.638 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:26.638 -07 000000475 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:47:26.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:47:26.788 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:47:26.788 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:26.788 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:47:26.788 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:47:26.788 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:26.798 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:26.798 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:47:26.798 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:47:26.798 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:47:26.818 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:26.818 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:47:27.008 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:47:27.008 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 18:47:27.048 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:27.048 -07 000000475 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:47:27.058 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:27.058 -07 000000424 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:27.058 -07 000000424 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:47:27.058 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:47:27.348 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.012614,
17-03-17 18:47:28.008 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:28.008 -07 000000012 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:47:28.018 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:28.018 -07 000000424 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:28.028 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:28.028 -07 000000424 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:47:28.028 -07 000000424 INF: Y Motor: Moved to 64.0576 after 1443 ms (table move)
17-03-17 18:47:28.038 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139043 mm (DAC = 30374)
17-03-17 18:47:28.038 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.038 -07 000000475 INF: FPGA: Recv ZSGSRD 30927
17-03-17 18:47:28.048 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:28.048 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.048 -07 000000475 INF: FPGA: Recv ZSGSRD 30928
17-03-17 18:47:28.058 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.058 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.058 -07 000000475 INF: FPGA: Recv ZSGSRD 30939
17-03-17 18:47:28.068 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.068 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30940
17-03-17 18:47:28.078 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.078 -07 000000475 INF: FPGA: Recv ZSGSRD 30940
17-03-17 18:47:28.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.088 -07 000000462 INF: FPGA: Recv ZSGSRD 30934
17-03-17 18:47:28.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.098 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.098 -07 000000462 INF: FPGA: Recv ZSGSRD 30928
17-03-17 18:47:28.108 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.108 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.108 -07 000000462 INF: FPGA: Recv ZSGSRD 30932
17-03-17 18:47:28.118 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.118 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30930
17-03-17 18:47:28.128 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.128 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.128 -07 000000462 INF: FPGA: Recv ZSGSRD 30932
17-03-17 18:47:28.138 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.138 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:28.138 -07 000000462 INF: FPGA: Recv ZPIEZORD 26815
17-03-17 18:47:28.148 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.148 -07 000000501 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.635 V. Piezo Error = -9.1 V.
17-03-17 18:47:28.148 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30933 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30932 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30927 (-138.2 uncal um), Max = 30940 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:47:28.148 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30933, posNoise = 7, negNoise = 6
17-03-17 18:47:28.148 -07 000000501 INF: Z Motor: After move to -0.139043, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:28.148 -07 000000501 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:47:28.148 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:28.198 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 18:47:28.198 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:28.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:28.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:28.198 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:28.198 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:28.198 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:28.198 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:28.208 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:28.208 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:28.208 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:28.208 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:28.218 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:47:28.218 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:47:28.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:28.258 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:28.458 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:28.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:28.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:28.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 18:47:28.498 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:28.498 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:28.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:47:28.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:47:28.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:28.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:47:28.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:47:28.598 -07 000000561 INF: Autofocus start
17-03-17 18:47:28.598 -07 000000561 INF: MeasureProfile start
17-03-17 18:47:28.598 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:28.598 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:28.608 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:28.608 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:28.608 -07 000000561 INF: MeasureProfile done
17-03-17 18:47:28.608 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:47:28.608 -07 000000561 INF: Autofocus finished
17-03-17 18:47:28.808 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:28.808 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:28.818 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.139043506192227. ----------
17-03-17 18:47:28.818 -07 000000610 INF: Cycle	17	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:28.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28881, sync = True, waitForSettling = True)
17-03-17 18:47:28.818 -07 000000610 INF: Z Motor: Moving to -0.132209 mm, started at -0.139044 mm, distance = 6.83 um
17-03-17 18:47:28.818 -07 000000610 INF: FPGA: Xmit ZDACW 28881\n [Z Motor]
17-03-17 18:47:28.818 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:47:28.828 -07 000000610 INF: FPGA: 'ZDACW 28881' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:28.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:28.828 -07 000000424 INF: FPGA: Recv ZDACR 28881
17-03-17 18:47:28.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:28.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:28.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.988 -07 000000561 INF: FPGA: Recv ZSGSRD 29873
17-03-17 18:47:28.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:28.998 -07 000000561 INF: FPGA: Recv ZSGSRD 29874
17-03-17 18:47:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.008 -07 000000561 INF: FPGA: Recv ZSGSRD 29870
17-03-17 18:47:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.018 -07 000000424 INF: FPGA: Recv ZSGSRD 29868
17-03-17 18:47:29.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.028 -07 000000561 INF: FPGA: Recv ZSGSRD 29864
17-03-17 18:47:29.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.038 -07 000000561 INF: FPGA: Recv ZSGSRD 29868
17-03-17 18:47:29.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.048 -07 000000424 INF: FPGA: Recv ZSGSRD 29877
17-03-17 18:47:29.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.058 -07 000000561 INF: FPGA: Recv ZSGSRD 29872
17-03-17 18:47:29.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.068 -07 000000561 INF: FPGA: Recv ZSGSRD 29870
17-03-17 18:47:29.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:29.078 -07 000000424 INF: FPGA: Recv ZSGSRD 29871
17-03-17 18:47:29.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:29.088 -07 000000561 INF: FPGA: Recv ZPIEZORD 25397
17-03-17 18:47:29.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:29.098 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.8 V.
17-03-17 18:47:29.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29871 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29870 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29864 (-131.4 uncal um), Max = 29877 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:47:29.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29871, posNoise = 6, negNoise = 7
17-03-17 18:47:29.098 -07 000000610 INF: Z Motor: After move to -0.132209, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:29.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:47:29.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:29.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:29.098 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:29.098 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:29.098 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:29.098 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:29.098 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:29.098 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:29.098 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:29.098 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:29.098 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:29.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:29.108 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:29.108 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:29.108 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:29.108 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:29.118 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:47:29.118 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:47:29.118 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:47:29.118 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:47:29.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29058 150\n [Camera]
17-03-17 18:47:29.318 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:29.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:29.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:29.718 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:29.718 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:29.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1414856408, 0x0, 391868352) start.
17-03-17 18:47:29.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:29.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:29.718 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:29.838 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:29.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:47:29.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29058 780
17-03-17 18:47:30.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:30.118 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1414856408, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:47:30.118 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:47:30.118 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:30.118 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:47:30.118 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:47:30.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:47:30.228 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:47:30.228 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:30.238 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:30.238 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 18:47:30.248 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:30.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:30.248 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:30.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:30.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:30.258 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:30.258 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:30.258 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:47:30.258 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:30.258 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:47:30.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:47:30.438 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:30.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29058 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-17 18:47:30.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:30.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132220992897677. ------
17-03-17 18:47:30.448 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:30.448 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13879 mm
17-03-17 18:47:30.448 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:30.448 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:30.448 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30319, sync = True, waitForSettling = False)
17-03-17 18:47:30.448 -07 000000569 INF: Z Motor: Moving to -0.138791 mm, started at -0.132221 mm, distance = -6.57 um
17-03-17 18:47:30.458 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:47:30.458 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:47:30.458 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:30.458 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:30.458 -07 000000382 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:47:30.468 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:30.468 -07 000000561 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:30.468 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:30.468 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:30.468 -07 000000561 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:47:30.478 -07 000000569 INF: FPGA: Xmit ZDACW 30319\n [Z Motor]
17-03-17 18:47:30.478 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:47:30.488 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:30.488 -07 000000569 INF: FPGA: 'ZDACW 30319' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:47:30.498 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:30.498 -07 000000424 INF: FPGA: Recv ZDACR 30319
17-03-17 18:47:30.508 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:47:30.508 -07 000000569 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:47:30.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:47:30.658 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:47:30.658 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:30.658 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:47:30.658 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:47:30.658 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:30.668 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:30.668 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:47:30.668 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:30.668 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:30.668 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:47:30.678 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:47:30.858 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:47:30.858 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:47:30.888 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:30.898 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:47:30.898 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 18:47:30.898 -07 000000561 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:30.898 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:47:30.898 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 18:47:31.628 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:31.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:31.848 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:31.848 -07 000000476 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:47:31.858 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:31.858 -07 000000561 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:31.878 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:31.878 -07 000000561 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:47:31.878 -07 000000561 INF: Y Motor: Moved to 64.8799 after 1421 ms (table move)
17-03-17 18:47:31.878 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138791 mm (DAC = 30319)
17-03-17 18:47:31.878 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.878 -07 000000561 INF: FPGA: Recv ZSGSRD 30891
17-03-17 18:47:31.888 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:31.888 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30893
17-03-17 18:47:31.898 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.898 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.898 -07 000000012 INF: FPGA: Recv ZSGSRD 30885
17-03-17 18:47:31.908 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.908 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.908 -07 000000012 INF: FPGA: Recv ZSGSRD 30892
17-03-17 18:47:31.918 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.918 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.918 -07 000000012 INF: FPGA: Recv ZSGSRD 30900
17-03-17 18:47:31.928 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.928 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.928 -07 000000480 INF: FPGA: Recv ZSGSRD 30898
17-03-17 18:47:31.938 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.938 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.938 -07 000000476 INF: FPGA: Recv ZSGSRD 30900
17-03-17 18:47:31.948 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.948 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.948 -07 000000382 INF: FPGA: Recv ZSGSRD 30894
17-03-17 18:47:31.958 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.958 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.958 -07 000000478 INF: FPGA: Recv ZSGSRD 30896
17-03-17 18:47:31.968 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.968 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:31.968 -07 000000478 INF: FPGA: Recv ZSGSRD 30898
17-03-17 18:47:31.978 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.978 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:31.978 -07 000000478 INF: FPGA: Recv ZPIEZORD 26741
17-03-17 18:47:31.988 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:31.988 -07 000000486 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -9.1 V.
17-03-17 18:47:31.988 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30895 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30895 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30885 (-137.9 uncal um), Max = 30900 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:47:31.988 -07 000000486 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30895, posNoise = 5, negNoise = 10
17-03-17 18:47:31.988 -07 000000486 INF: Z Motor: After move to -0.138791, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:31.988 -07 000000486 INF: Z Motor: Settle wait time = 1425 ms, measure time = 106 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:47:31.988 -07 000000486 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:32.038 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:47:32.038 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:32.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:32.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:32.038 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:32.038 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:32.038 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:32.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:32.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:32.038 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:32.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:32.048 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:32.058 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:47:32.058 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:47:32.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:32.108 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:32.308 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:32.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:32.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:32.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369687368, 0x0, 559484976) start.
17-03-17 18:47:32.348 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:32.348 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:32.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:47:32.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369687368, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:47:32.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:32.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:47:32.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 226 ms.
17-03-17 18:47:32.628 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:32.628 -07 000000593 INF: Autofocus start
17-03-17 18:47:32.628 -07 000000593 INF: MeasureProfile start
17-03-17 18:47:32.628 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:32.638 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:32.638 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:32.638 -07 000000593 INF: MeasureProfile done
17-03-17 18:47:32.638 -07 000000593 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:47:32.638 -07 000000593 INF: Autofocus finished
17-03-17 18:47:32.708 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.071149,
17-03-17 18:47:33.248 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:33.248 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 604 ms to get response, and 613 ms overall
17-03-17 18:47:33.248 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.13879938613084. ----------
17-03-17 18:47:33.258 -07 000000610 INF: Cycle	17	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:33.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28797, sync = True, waitForSettling = True)
17-03-17 18:47:33.258 -07 000000610 INF: Z Motor: Moving to -0.131824 mm, started at -0.138799 mm, distance = 6.98 um
17-03-17 18:47:33.278 -07 000000610 INF: FPGA: Xmit ZDACW 28797\n [Z Motor]
17-03-17 18:47:33.278 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:47:33.288 -07 000000610 INF: FPGA: 'ZDACW 28797' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:47:33.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:33.288 -07 000000618 INF: FPGA: Recv ZDACR 28797
17-03-17 18:47:33.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.448 -07 000000486 INF: FPGA: Recv ZSGSRD 29811
17-03-17 18:47:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.458 -07 000000486 INF: FPGA: Recv ZSGSRD 29810
17-03-17 18:47:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29814
17-03-17 18:47:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.478 -07 000000486 INF: FPGA: Recv ZSGSRD 29806
17-03-17 18:47:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.488 -07 000000486 INF: FPGA: Recv ZSGSRD 29811
17-03-17 18:47:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29812
17-03-17 18:47:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.508 -07 000000627 INF: FPGA: Recv ZSGSRD 29810
17-03-17 18:47:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.518 -07 000000627 INF: FPGA: Recv ZSGSRD 29811
17-03-17 18:47:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.528 -07 000000627 INF: FPGA: Recv ZSGSRD 29807
17-03-17 18:47:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:33.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29814
17-03-17 18:47:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:33.548 -07 000000627 INF: FPGA: Recv ZPIEZORD 25350
17-03-17 18:47:33.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:33.558 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.8 V.
17-03-17 18:47:33.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29811 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29811 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29806 (-131.0 uncal um), Max = 29814 (-131.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:47:33.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29811, posNoise = 3, negNoise = 5
17-03-17 18:47:33.558 -07 000000610 INF: Z Motor: After move to -0.131824, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:33.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-17 18:47:33.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:33.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:33.558 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:33.558 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:33.558 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:33.558 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:33.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:33.558 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:33.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:33.558 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:33.558 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:33.558 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:33.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:47:33.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:33.568 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:33.568 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:33.578 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:47:33.578 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:47:33.578 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:47:33.578 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:47:33.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28974 150\n [Camera]
17-03-17 18:47:33.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:34.178 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:34.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:34.178 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:34.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:34.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:34.178 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:34.178 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:34.178 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 18:47:34.178 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:34.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:47:34.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28974 780
17-03-17 18:47:34.508 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:34.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:47:34.578 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:47:34.578 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:34.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:47:34.578 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:34.578 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:47:34.578 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:47:34.578 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:34.578 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:34.588 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:47:34.708 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-17 18:47:34.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-17 18:47:34.708 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:34.708 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-17 18:47:34.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-17 18:47:34.708 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:34.718 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:34.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:47:34.718 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:34.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:47:34.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:47:34.898 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:34.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28974 150' command took 2 ms to send, 1313 ms to get response, and 1321 ms overall
17-03-17 18:47:34.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:34.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.131835540169171. ------
17-03-17 18:47:34.908 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:34.908 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13844 mm
17-03-17 18:47:34.908 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:34.908 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:34.908 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30242, sync = True, waitForSettling = False)
17-03-17 18:47:34.908 -07 000000382 INF: Z Motor: Moving to -0.138439 mm, started at -0.131836 mm, distance = -6.60 um
17-03-17 18:47:34.908 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:47:34.908 -07 000000476 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 18:47:34.918 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:34.918 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:34.918 -07 000000012 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:47:34.928 -07 000000382 INF: FPGA: Xmit ZDACW 30242\n [Z Motor]
17-03-17 18:47:34.928 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:47:34.928 -07 000000476 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:34.928 -07 000000476 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:34.928 -07 000000476 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:47:34.928 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:47:34.938 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:34.938 -07 000000382 INF: FPGA: 'ZDACW 30242' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:47:34.948 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:34.958 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:34.958 -07 000000012 INF: FPGA: Recv ZDACR 30242
17-03-17 18:47:34.968 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:34.968 -07 000000382 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:47:35.108 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:47:35.108 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:47:35.108 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:35.108 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:47:35.108 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:47:35.108 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:35.108 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:35.118 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:35.118 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:47:35.118 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:47:35.138 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:35.138 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:47:35.318 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:47:35.318 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:47:35.358 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:35.358 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:47:35.368 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:35.368 -07 000000476 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:35.368 -07 000000476 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:47:35.368 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 18:47:36.318 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:36.318 -07 000000424 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:47:36.328 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:36.328 -07 000000476 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:36.348 -07 000000476 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:36.348 -07 000000476 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:47:36.348 -07 000000476 INF: Y Motor: Moved to 65.7148 after 1436 ms (table move)
17-03-17 18:47:36.348 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138439 mm (DAC = 30242)
17-03-17 18:47:36.348 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.348 -07 000000382 INF: FPGA: Recv ZSGSRD 30847
17-03-17 18:47:36.358 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:36.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.358 -07 000000382 INF: FPGA: Recv ZSGSRD 30837
17-03-17 18:47:36.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.368 -07 000000618 INF: FPGA: Recv ZSGSRD 30841
17-03-17 18:47:36.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.378 -07 000000618 INF: FPGA: Recv ZSGSRD 30842
17-03-17 18:47:36.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.388 -07 000000382 INF: FPGA: Recv ZSGSRD 30842
17-03-17 18:47:36.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.398 -07 000000382 INF: FPGA: Recv ZSGSRD 30843
17-03-17 18:47:36.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.408 -07 000000382 INF: FPGA: Recv ZSGSRD 30842
17-03-17 18:47:36.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.418 -07 000000382 INF: FPGA: Recv ZSGSRD 30838
17-03-17 18:47:36.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.428 -07 000000424 INF: FPGA: Recv ZSGSRD 30834
17-03-17 18:47:36.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:36.438 -07 000000382 INF: FPGA: Recv ZSGSRD 30836
17-03-17 18:47:36.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.448 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:36.448 -07 000000424 INF: FPGA: Recv ZPIEZORD 26736
17-03-17 18:47:36.458 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:36.458 -07 000000626 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.615 V. Piezo Error = -9.0 V.
17-03-17 18:47:36.458 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30840 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30842 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30834 (-137.6 uncal um), Max = 30847 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:47:36.458 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30840, posNoise = 7, negNoise = 6
17-03-17 18:47:36.458 -07 000000626 INF: Z Motor: After move to -0.138439, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:36.458 -07 000000626 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:47:36.458 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:36.508 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 18:47:36.508 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:36.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:36.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:36.508 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:36.508 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:36.508 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:36.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:36.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:36.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:36.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:36.518 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:36.518 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:47:36.518 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:47:36.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:36.578 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:36.628 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:36.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:36.778 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:36.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:36.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:36.888 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:36.888 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:36.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468351704, 0x0, 559484976) start.
17-03-17 18:47:36.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 351 ms to get response, and 356 ms overall
17-03-17 18:47:37.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468351704, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:47:37.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:37.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:47:37.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-17 18:47:37.088 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:37.088 -07 000000486 INF: Autofocus start
17-03-17 18:47:37.088 -07 000000486 INF: MeasureProfile start
17-03-17 18:47:37.088 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:37.098 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:37.098 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:37.098 -07 000000486 INF: MeasureProfile done
17-03-17 18:47:37.098 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:47:37.098 -07 000000486 INF: Autofocus finished
17-03-17 18:47:37.298 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:37.298 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:37.298 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138446054463043. ----------
17-03-17 18:47:37.308 -07 000000610 INF: Cycle	17	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:37.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28783, sync = True, waitForSettling = True)
17-03-17 18:47:37.308 -07 000000610 INF: Z Motor: Moving to -0.131760 mm, started at -0.138446 mm, distance = 6.69 um
17-03-17 18:47:37.308 -07 000000610 INF: FPGA: Xmit ZDACW 28783\n [Z Motor]
17-03-17 18:47:37.308 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:47:37.318 -07 000000610 INF: FPGA: 'ZDACW 28783' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:47:37.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:37.318 -07 000000561 INF: FPGA: Recv ZDACR 28783
17-03-17 18:47:37.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:37.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.478 -07 000000424 INF: FPGA: Recv ZSGSRD 29801
17-03-17 18:47:37.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:37.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.488 -07 000000424 INF: FPGA: Recv ZSGSRD 29802
17-03-17 18:47:37.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.498 -07 000000476 INF: FPGA: Recv ZSGSRD 29800
17-03-17 18:47:37.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29798
17-03-17 18:47:37.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.518 -07 000000476 INF: FPGA: Recv ZSGSRD 29801
17-03-17 18:47:37.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.528 -07 000000593 INF: FPGA: Recv ZSGSRD 29805
17-03-17 18:47:37.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29798
17-03-17 18:47:37.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.548 -07 000000627 INF: FPGA: Recv ZSGSRD 29797
17-03-17 18:47:37.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.558 -07 000000618 INF: FPGA: Recv ZSGSRD 29802
17-03-17 18:47:37.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:37.568 -07 000000618 INF: FPGA: Recv ZSGSRD 29798
17-03-17 18:47:37.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:37.578 -07 000000382 INF: FPGA: Recv ZPIEZORD 25353
17-03-17 18:47:37.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:37.588 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.8 V.
17-03-17 18:47:37.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29800 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29800 (-131.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29797 (-131.0 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:47:37.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29800, posNoise = 5, negNoise = 3
17-03-17 18:47:37.588 -07 000000610 INF: Z Motor: After move to -0.131760, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:37.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:47:37.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:37.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:37.588 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:37.588 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:37.588 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:37.588 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:37.588 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:37.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:37.588 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:37.588 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:37.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:37.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:37.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:37.598 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:37.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:37.598 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:37.608 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:47:37.608 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:47:37.608 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:47:37.608 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:47:37.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28960 150\n [Camera]
17-03-17 18:47:37.818 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:38.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:38.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:38.208 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:38.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:38.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:38.208 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:38.218 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:38.218 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 18:47:38.218 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:38.218 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:47:38.408 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28960 780
17-03-17 18:47:38.548 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:38.598 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.03576,
17-03-17 18:47:38.598 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:47:38.598 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:47:38.598 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:38.598 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:47:38.598 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:47:38.598 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:38.598 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:38.608 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:38.608 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:47:38.608 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:47:38.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:38.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:38.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:38.748 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:38.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:38.748 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:38.748 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:38.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:47:38.748 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:38.748 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:47:38.928 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:38.938 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:38.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28960 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-17 18:47:38.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:38.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131764873835612. ------
17-03-17 18:47:38.938 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:38.938 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13808 mm
17-03-17 18:47:38.938 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:38.948 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:38.948 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:47:38.948 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:47:38.948 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:47:38.948 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:38.948 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30164, sync = True, waitForSettling = False)
17-03-17 18:47:38.948 -07 000000618 INF: Z Motor: Moving to -0.138082 mm, started at -0.131765 mm, distance = -6.32 um
17-03-17 18:47:38.948 -07 000000382 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:47:38.958 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:38.958 -07 000000561 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:38.958 -07 000000618 INF: FPGA: Xmit ZDACW 30164\n [Z Motor]
17-03-17 18:47:38.958 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:47:38.958 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:38.958 -07 000000561 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:47:38.968 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:38.968 -07 000000618 INF: FPGA: 'ZDACW 30164' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:47:38.978 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:38.988 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:38.988 -07 000000382 INF: FPGA: Recv ZDACR 30164
17-03-17 18:47:38.998 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:38.998 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:47:39.148 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:47:39.148 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:47:39.148 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:39.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:47:39.148 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:47:39.148 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:39.158 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:39.158 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:47:39.158 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:39.168 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:47:39.168 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:39.168 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:47:39.348 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:47:39.348 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:47:39.388 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:39.388 -07 000000618 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:47:39.398 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:39.398 -07 000000561 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:39.398 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:47:39.398 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-17 18:47:40.348 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:40.348 -07 000000626 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:47:40.358 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:40.358 -07 000000561 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:40.378 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:40.378 -07 000000561 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:47:40.378 -07 000000561 INF: Y Motor: Moved to 66.5400 after 1430 ms (table move)
17-03-17 18:47:40.378 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138082 mm (DAC = 30164)
17-03-17 18:47:40.378 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.378 -07 000000486 INF: FPGA: Recv ZSGSRD 30788
17-03-17 18:47:40.388 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:40.388 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30776
17-03-17 18:47:40.398 -07 000000476 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.398 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.398 -07 000000561 INF: FPGA: Recv ZSGSRD 30783
17-03-17 18:47:40.408 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.408 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.408 -07 000000593 INF: FPGA: Recv ZSGSRD 30788
17-03-17 18:47:40.418 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.418 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.418 -07 000000627 INF: FPGA: Recv ZSGSRD 30782
17-03-17 18:47:40.428 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.428 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.428 -07 000000486 INF: FPGA: Recv ZSGSRD 30791
17-03-17 18:47:40.438 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.438 -07 000000626 INF: FPGA: Recv ZSGSRD 30786
17-03-17 18:47:40.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.448 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.448 -07 000000012 INF: FPGA: Recv ZSGSRD 30781
17-03-17 18:47:40.458 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.458 -07 000000382 INF: FPGA: Recv ZSGSRD 30783
17-03-17 18:47:40.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:40.468 -07 000000593 INF: FPGA: Recv ZSGSRD 30780
17-03-17 18:47:40.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.478 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:40.478 -07 000000382 INF: FPGA: Recv ZPIEZORD 26671
17-03-17 18:47:40.488 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:40.488 -07 000000476 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.603 V. Piezo Error = -9.1 V.
17-03-17 18:47:40.488 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30784 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30783 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30776 (-137.2 uncal um), Max = 30791 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:47:40.488 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30784, posNoise = 7, negNoise = 8
17-03-17 18:47:40.488 -07 000000476 INF: Z Motor: After move to -0.138082, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:40.488 -07 000000476 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:47:40.488 -07 000000476 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:40.538 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:47:40.538 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:40.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:40.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:40.538 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:40.538 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:40.538 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:40.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:40.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:40.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:40.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:40.548 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:40.558 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:47:40.558 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:47:40.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:40.608 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:47:40.808 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:47:40.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:47:40.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:40.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432929440, 0x0, 559484976) start.
17-03-17 18:47:40.838 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:40.848 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:40.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:47:40.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432929440, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:47:40.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:40.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:40.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:47:40.948 -07 000000626 INF: Autofocus start
17-03-17 18:47:40.948 -07 000000626 INF: MeasureProfile start
17-03-17 18:47:40.948 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:40.948 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:40.958 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:40.958 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:40.958 -07 000000626 INF: MeasureProfile done
17-03-17 18:47:40.958 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:47:40.958 -07 000000626 INF: Autofocus finished
17-03-17 18:47:41.158 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:41.158 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:41.158 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.138086298583104. ----------
17-03-17 18:47:41.158 -07 000000610 INF: Cycle	17	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:41.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28672, sync = True, waitForSettling = True)
17-03-17 18:47:41.168 -07 000000610 INF: Z Motor: Moving to -0.131252 mm, started at -0.138086 mm, distance = 6.83 um
17-03-17 18:47:41.168 -07 000000610 INF: FPGA: Xmit ZDACW 28672\n [Z Motor]
17-03-17 18:47:41.168 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:47:41.178 -07 000000610 INF: FPGA: 'ZDACW 28672' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:47:41.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:41.178 -07 000000561 INF: FPGA: Recv ZDACR 28672
17-03-17 18:47:41.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:41.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.338 -07 000000429 INF: FPGA: Recv ZSGSRD 29721
17-03-17 18:47:41.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.348 -07 000000561 INF: FPGA: Recv ZSGSRD 29718
17-03-17 18:47:41.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.358 -07 000000476 INF: FPGA: Recv ZSGSRD 29724
17-03-17 18:47:41.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.368 -07 000000476 INF: FPGA: Recv ZSGSRD 29725
17-03-17 18:47:41.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.378 -07 000000561 INF: FPGA: Recv ZSGSRD 29725
17-03-17 18:47:41.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.388 -07 000000486 INF: FPGA: Recv ZSGSRD 29720
17-03-17 18:47:41.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29718
17-03-17 18:47:41.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.408 -07 000000012 INF: FPGA: Recv ZSGSRD 29722
17-03-17 18:47:41.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.418 -07 000000627 INF: FPGA: Recv ZSGSRD 29722
17-03-17 18:47:41.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:41.428 -07 000000593 INF: FPGA: Recv ZSGSRD 29719
17-03-17 18:47:41.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:41.438 -07 000000476 INF: FPGA: Recv ZPIEZORD 25256
17-03-17 18:47:41.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:41.448 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.375 V. Piezo Error = -9.8 V.
17-03-17 18:47:41.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29721 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29722 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29718 (-130.5 uncal um), Max = 29725 (-130.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:47:41.448 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29721, posNoise = 4, negNoise = 3
17-03-17 18:47:41.448 -07 000000610 INF: Z Motor: After move to -0.131252, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:41.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:47:41.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:41.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:41.448 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:41.448 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:41.448 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:41.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:41.448 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:41.448 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:41.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:47:41.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:41.448 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:47:41.448 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:41.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:41.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:41.458 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:47:41.458 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:41.468 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:47:41.468 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:47:41.468 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:47:41.468 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:47:41.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28848 150\n [Camera]
17-03-17 18:47:41.628 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:41.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:41.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:42.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:42.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:42.068 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:42.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:42.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:42.068 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:42.078 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:42.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:47:42.078 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:42.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2478622480, 0x0, 391868352) start.
17-03-17 18:47:42.258 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28848 780
17-03-17 18:47:42.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:42.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:47:42.458 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:47:42.458 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:42.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2478622480, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:47:42.458 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:47:42.458 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:42.458 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:47:42.468 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:47:42.468 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:47:42.468 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:47:42.598 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:42.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:42.598 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:42.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:42.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:42.608 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:42.608 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:42.608 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:47:42.618 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:42.618 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:47:42.788 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:42.798 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:42.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28848 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-17 18:47:42.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:42.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131257361076412. ------
17-03-17 18:47:42.798 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:42.798 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13803 mm
17-03-17 18:47:42.798 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:42.798 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:42.798 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30154, sync = True, waitForSettling = False)
17-03-17 18:47:42.798 -07 000000593 INF: Z Motor: Moving to -0.138036 mm, started at -0.131257 mm, distance = -6.78 um
17-03-17 18:47:42.808 -07 000000593 INF: FPGA: Xmit ZDACW 30154\n [Z Motor]
17-03-17 18:47:42.808 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:42.808 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:47:42.808 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:47:42.808 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:47:42.818 -07 000000593 INF: FPGA: 'ZDACW 30154' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:42.818 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:42.818 -07 000000480 INF: FPGA: Recv ZDACR 30154
17-03-17 18:47:42.828 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:42.828 -07 000000593 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:47:42.828 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:42.828 -07 000000415 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:47:42.838 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:42.838 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:47:42.838 -07 000000012 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:42.838 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:42.838 -07 000000012 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:47:42.848 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:42.998 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:47:42.998 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:47:42.998 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:42.998 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:47:42.998 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:47:42.998 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:42.998 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:42.998 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:47:42.998 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:43.008 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:47:43.038 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:43.038 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 18:47:43.218 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:47:43.218 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:47:43.258 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:43.258 -07 000000415 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:47:43.268 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:47:43.268 -07 000000012 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:43.268 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:47:43.268 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.177 mm/sec
17-03-17 18:47:43.958 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 4.016692,
17-03-17 18:47:44.218 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:44.218 -07 000000424 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:47:44.228 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.228 -07 000000012 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:44.248 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:44.248 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:47:44.248 -07 000000012 INF: Y Motor: Moved to 67.3730 after 1439 ms (table move)
17-03-17 18:47:44.248 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138036 mm (DAC = 30154)
17-03-17 18:47:44.248 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.248 -07 000000627 INF: FPGA: Recv ZSGSRD 30772
17-03-17 18:47:44.258 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:44.258 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.258 -07 000000626 INF: FPGA: Recv ZSGSRD 30770
17-03-17 18:47:44.268 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.268 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.268 -07 000000475 INF: FPGA: Recv ZSGSRD 30776
17-03-17 18:47:44.278 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.278 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.278 -07 000000415 INF: FPGA: Recv ZSGSRD 30785
17-03-17 18:47:44.288 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.288 -07 000000480 INF: FPGA: Recv ZSGSRD 30779
17-03-17 18:47:44.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.298 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.298 -07 000000627 INF: FPGA: Recv ZSGSRD 30778
17-03-17 18:47:44.308 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.308 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.308 -07 000000626 INF: FPGA: Recv ZSGSRD 30781
17-03-17 18:47:44.318 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.318 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.318 -07 000000569 INF: FPGA: Recv ZSGSRD 30775
17-03-17 18:47:44.328 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.328 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.328 -07 000000618 INF: FPGA: Recv ZSGSRD 30774
17-03-17 18:47:44.338 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.338 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:44.338 -07 000000486 INF: FPGA: Recv ZSGSRD 30770
17-03-17 18:47:44.348 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.348 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:44.348 -07 000000476 INF: FPGA: Recv ZPIEZORD 26672
17-03-17 18:47:44.358 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:44.358 -07 000000429 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -9.0 V.
17-03-17 18:47:44.358 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30776 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30770 (-137.2 uncal um), Max = 30785 (-137.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:47:44.358 -07 000000429 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30776, posNoise = 9, negNoise = 6
17-03-17 18:47:44.358 -07 000000429 INF: Z Motor: After move to -0.138036, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:44.358 -07 000000429 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-17 18:47:44.358 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:44.408 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 18:47:44.408 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:44.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:44.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:44.408 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:44.408 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:44.408 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:44.408 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:44.408 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:44.408 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:44.418 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:44.418 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:44.428 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:47:44.428 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:47:44.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:44.478 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:44.678 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:44.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:44.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:44.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) start.
17-03-17 18:47:44.718 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:44.718 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:44.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:47:44.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317258912, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:47:44.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:44.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:44.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:47:44.818 -07 000000478 INF: Autofocus start
17-03-17 18:47:44.818 -07 000000478 INF: MeasureProfile start
17-03-17 18:47:44.818 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:44.818 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:44.828 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:44.828 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:44.828 -07 000000478 INF: MeasureProfile done
17-03-17 18:47:44.828 -07 000000478 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:47:44.828 -07 000000478 INF: Autofocus finished
17-03-17 18:47:45.028 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:45.028 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:45.028 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.13803490488597. ----------
17-03-17 18:47:45.038 -07 000000610 INF: Cycle	17	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:45.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28649, sync = True, waitForSettling = True)
17-03-17 18:47:45.038 -07 000000610 INF: Z Motor: Moving to -0.131147 mm, started at -0.138035 mm, distance = 6.89 um
17-03-17 18:47:45.038 -07 000000610 INF: FPGA: Xmit ZDACW 28649\n [Z Motor]
17-03-17 18:47:45.038 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:47:45.048 -07 000000610 INF: FPGA: 'ZDACW 28649' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:47:45.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:45.048 -07 000000608 INF: FPGA: Recv ZDACR 28649
17-03-17 18:47:45.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.208 -07 000000462 INF: FPGA: Recv ZSGSRD 29709
17-03-17 18:47:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:47:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.248 -07 000000424 INF: FPGA: Recv ZSGSRD 29708
17-03-17 18:47:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.268 -07 000000486 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:47:45.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:47:45.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.278 -07 000000608 INF: FPGA: Recv ZSGSRD 29708
17-03-17 18:47:45.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.298 -07 000000593 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:47:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:47:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.308 -07 000000501 INF: FPGA: Recv ZSGSRD 29705
17-03-17 18:47:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:45.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:47:45.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.328 -07 000000608 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:47:45.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:45.338 -07 000000627 INF: FPGA: Recv ZSGSRD 29710
17-03-17 18:47:45.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:45.348 -07 000000608 INF: FPGA: Recv ZPIEZORD 25246
17-03-17 18:47:45.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:45.358 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.8 V.
17-03-17 18:47:45.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29704 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29703 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29698 (-130.3 uncal um), Max = 29710 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:47:45.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29704, posNoise = 6, negNoise = 6
17-03-17 18:47:45.358 -07 000000610 INF: Z Motor: After move to -0.131147, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:45.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 314 ms)
17-03-17 18:47:45.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:45.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:45.358 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:45.358 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:45.358 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:45.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:45.358 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:45.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:45.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:47:45.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:45.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:45.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:45.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:45.368 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:45.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:45.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:45.378 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:47:45.378 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:47:45.378 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:47:45.378 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:47:45.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28825 150\n [Camera]
17-03-17 18:47:45.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:45.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:45.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:45.978 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:45.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:45.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:45.978 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:46.088 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:46.088 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2336340296, 0x0, 391868352) start.
17-03-17 18:47:46.088 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:46.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:47:46.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28825 780
17-03-17 18:47:46.318 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:46.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2336340296, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:47:46.458 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:47:46.458 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:46.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:47:46.458 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:47:46.458 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:46.458 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:46.458 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 486 ms.
17-03-17 18:47:46.468 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:46.468 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 491 ms.
17-03-17 18:47:46.508 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:47:46.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:47:46.508 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:46.508 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:47:46.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:47:46.518 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:46.518 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:46.518 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:47:46.518 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:46.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:47:46.628 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:46.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:46.698 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:46.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28825 150' command took 2 ms to send, 1316 ms to get response, and 1320 ms overall
17-03-17 18:47:46.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:46.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131148149470002. ------
17-03-17 18:47:46.708 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13707 mm
17-03-17 18:47:46.708 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:46.708 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:46.708 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:46.708 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:47:46.708 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 18:47:46.708 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29942, sync = True, waitForSettling = False)
17-03-17 18:47:46.708 -07 000000561 INF: Z Motor: Moving to -0.137066 mm, started at -0.131148 mm, distance = -5.92 um
17-03-17 18:47:46.718 -07 000000561 INF: FPGA: Xmit ZDACW 29942\n [Z Motor]
17-03-17 18:47:46.718 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:47:46.718 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:47:46.728 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:46.728 -07 000000561 INF: FPGA: 'ZDACW 29942' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:47:46.728 -07 000000462 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:47:46.738 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:47:46.738 -07 000000569 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:46.738 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:46.738 -07 000000569 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:47:46.738 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:46.748 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:46.748 -07 000000462 INF: FPGA: Recv ZDACR 29942
17-03-17 18:47:46.758 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:46.758 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:46.758 -07 000000561 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:47:46.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:47:46.898 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:47:46.898 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:46.908 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:47:46.908 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:47:46.908 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:46.908 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:46.908 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:46.908 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:47:46.908 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:47:46.938 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:46.938 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:47:47.128 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:47:47.128 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:47:47.168 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:47.168 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:47:47.178 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:47.178 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:47.178 -07 000000569 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:47:47.178 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.109 mm/sec
17-03-17 18:47:48.128 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:48.128 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:47:48.138 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.138 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:48.148 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:48.148 -07 000000569 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:47:48.148 -07 000000569 INF: Y Motor: Moved to 68.2056 after 1440 ms (table move)
17-03-17 18:47:48.158 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137066 mm (DAC = 29942)
17-03-17 18:47:48.158 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30632
17-03-17 18:47:48.168 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:48.168 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.168 -07 000000462 INF: FPGA: Recv ZSGSRD 30627
17-03-17 18:47:48.178 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.178 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.178 -07 000000561 INF: FPGA: Recv ZSGSRD 30626
17-03-17 18:47:48.188 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.188 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.188 -07 000000478 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:47:48.198 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.198 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.198 -07 000000561 INF: FPGA: Recv ZSGSRD 30623
17-03-17 18:47:48.208 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.208 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.208 -07 000000478 INF: FPGA: Recv ZSGSRD 30627
17-03-17 18:47:48.218 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.218 -07 000000561 INF: FPGA: Recv ZSGSRD 30622
17-03-17 18:47:48.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:47:48.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.238 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.238 -07 000000462 INF: FPGA: Recv ZSGSRD 30623
17-03-17 18:47:48.248 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.248 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:48.248 -07 000000569 INF: FPGA: Recv ZSGSRD 30626
17-03-17 18:47:48.258 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.258 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:48.258 -07 000000462 INF: FPGA: Recv ZPIEZORD 26488
17-03-17 18:47:48.268 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.268 -07 000000627 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.1 V.
17-03-17 18:47:48.268 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30626 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30626 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30622 (-136.2 uncal um), Max = 30632 (-136.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:47:48.268 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30626, posNoise = 6, negNoise = 4
17-03-17 18:47:48.268 -07 000000627 INF: Z Motor: After move to -0.137066, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:48.268 -07 000000627 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:47:48.268 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:48.318 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:47:48.318 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:48.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:48.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:48.318 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:48.318 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:48.318 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:48.318 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:48.318 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:48.318 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:48.328 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:48.328 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:48.338 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:47:48.338 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:47:48.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:48.388 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:48.588 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:48.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:48.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:48.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468351704, 0x0, 559484976) start.
17-03-17 18:47:48.628 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:48.628 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:48.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:47:48.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468351704, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:47:48.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:48.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:48.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:47:48.728 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:48.728 -07 000000608 INF: Autofocus start
17-03-17 18:47:48.728 -07 000000608 INF: MeasureProfile start
17-03-17 18:47:48.728 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:48.738 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:48.738 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:48.738 -07 000000608 INF: MeasureProfile done
17-03-17 18:47:48.738 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:47:48.738 -07 000000608 INF: Autofocus finished
17-03-17 18:47:48.938 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:48.938 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:48.938 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137071273064706. ----------
17-03-17 18:47:48.938 -07 000000610 INF: Cycle	17	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:48.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28450, sync = True, waitForSettling = True)
17-03-17 18:47:48.948 -07 000000610 INF: Z Motor: Moving to -0.130236 mm, started at -0.137071 mm, distance = 6.84 um
17-03-17 18:47:48.948 -07 000000610 INF: FPGA: Xmit ZDACW 28450\n [Z Motor]
17-03-17 18:47:48.948 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:47:48.958 -07 000000610 INF: FPGA: 'ZDACW 28450' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:48.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:48.958 -07 000000478 INF: FPGA: Recv ZDACR 28450
17-03-17 18:47:48.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:48.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:49.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.118 -07 000000569 INF: FPGA: Recv ZSGSRD 29568
17-03-17 18:47:49.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:49.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.128 -07 000000627 INF: FPGA: Recv ZSGSRD 29563
17-03-17 18:47:49.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.138 -07 000000012 INF: FPGA: Recv ZSGSRD 29563
17-03-17 18:47:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29560
17-03-17 18:47:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.158 -07 000000012 INF: FPGA: Recv ZSGSRD 29566
17-03-17 18:47:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.168 -07 000000608 INF: FPGA: Recv ZSGSRD 29563
17-03-17 18:47:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.178 -07 000000626 INF: FPGA: Recv ZSGSRD 29565
17-03-17 18:47:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.188 -07 000000561 INF: FPGA: Recv ZSGSRD 29563
17-03-17 18:47:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29565
17-03-17 18:47:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:49.208 -07 000000561 INF: FPGA: Recv ZSGSRD 29568
17-03-17 18:47:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:49.218 -07 000000626 INF: FPGA: Recv ZPIEZORD 25124
17-03-17 18:47:49.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:49.228 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.7 V.
17-03-17 18:47:49.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29564 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29564 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29560 (-129.4 uncal um), Max = 29568 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:47:49.228 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29564, posNoise = 4, negNoise = 4
17-03-17 18:47:49.228 -07 000000610 INF: Z Motor: After move to -0.130236, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:49.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:47:49.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:49.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:49.228 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:49.228 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:49.228 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:49.228 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:49.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:49.228 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:49.228 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:47:49.228 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:49.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:49.228 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:49.238 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:47:49.238 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:49.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:49.238 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:49.238 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:47:49.238 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:47:49.248 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:47:49.248 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:47:49.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28627 150\n [Camera]
17-03-17 18:47:49.318 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.993549,
17-03-17 18:47:49.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:49.838 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:49.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:49.838 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:49.838 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:49.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:47:49.848 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:49.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:49.848 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:49.848 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:49.848 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:47:50.038 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28627 780
17-03-17 18:47:50.178 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:50.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:47:50.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:47:50.228 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:50.228 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:47:50.238 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:47:50.238 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:50.238 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:50.238 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:50.238 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:47:50.248 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:47:50.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:50.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:50.378 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:50.378 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:50.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:47:50.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:50.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:50.378 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:50.378 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:50.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:47:50.568 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:47:50.568 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:50.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28627 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-17 18:47:50.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:50.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130248759770156. ------
17-03-17 18:47:50.568 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13686 mm
17-03-17 18:47:50.568 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:50.568 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:50.578 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:50.578 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:47:50.578 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:50.578 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:47:50.578 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:47:50.578 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29898, sync = True, waitForSettling = False)
17-03-17 18:47:50.578 -07 000000382 INF: Z Motor: Moving to -0.136864 mm, started at -0.130249 mm, distance = -6.62 um
17-03-17 18:47:50.588 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:50.588 -07 000000627 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:47:50.598 -07 000000382 INF: FPGA: Xmit ZDACW 29898\n [Z Motor]
17-03-17 18:47:50.598 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:47:50.598 -07 000000478 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:50.598 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:50.598 -07 000000478 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:47:50.598 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:47:50.608 -07 000000382 INF: FPGA: 'ZDACW 29898' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:47:50.618 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:50.628 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:50.628 -07 000000476 INF: FPGA: Recv ZDACR 29898
17-03-17 18:47:50.638 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:47:50.638 -07 000000382 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 18:47:50.758 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:47:50.758 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:47:50.758 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:50.758 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:47:50.758 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:47:50.758 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:50.768 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:50.768 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:47:50.768 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:47:50.768 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:47:50.778 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:50.778 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:47:50.988 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:47:50.988 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:47:51.028 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:51.028 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:47:51.038 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:51.038 -07 000000478 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:51.038 -07 000000478 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:47:51.038 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-17 18:47:51.628 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:51.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:51.988 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:51.988 -07 000000608 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:47:51.998 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:51.998 -07 000000478 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:52.018 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:52.018 -07 000000478 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:47:52.018 -07 000000478 INF: Y Motor: Moved to 69.0278 after 1438 ms (table move)
17-03-17 18:47:52.018 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136864 mm (DAC = 29898)
17-03-17 18:47:52.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.018 -07 000000627 INF: FPGA: Recv ZSGSRD 30595
17-03-17 18:47:52.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:52.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.028 -07 000000462 INF: FPGA: Recv ZSGSRD 30595
17-03-17 18:47:52.038 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.038 -07 000000608 INF: FPGA: Recv ZSGSRD 30594
17-03-17 18:47:52.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.048 -07 000000429 INF: FPGA: Recv ZSGSRD 30594
17-03-17 18:47:52.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.058 -07 000000429 INF: FPGA: Recv ZSGSRD 30598
17-03-17 18:47:52.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.068 -07 000000429 INF: FPGA: Recv ZSGSRD 30597
17-03-17 18:47:52.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.078 -07 000000478 INF: FPGA: Recv ZSGSRD 30596
17-03-17 18:47:52.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.088 -07 000000608 INF: FPGA: Recv ZSGSRD 30590
17-03-17 18:47:52.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.098 -07 000000608 INF: FPGA: Recv ZSGSRD 30593
17-03-17 18:47:52.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:52.108 -07 000000627 INF: FPGA: Recv ZSGSRD 30594
17-03-17 18:47:52.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.118 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:52.118 -07 000000627 INF: FPGA: Recv ZPIEZORD 26467
17-03-17 18:47:52.128 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.128 -07 000000012 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.1 V.
17-03-17 18:47:52.128 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30595 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30594 (-136.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30590 (-136.0 uncal um), Max = 30598 (-136.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:47:52.128 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30595, posNoise = 3, negNoise = 5
17-03-17 18:47:52.128 -07 000000012 INF: Z Motor: After move to -0.136864, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:52.128 -07 000000012 INF: Z Motor: Settle wait time = 1441 ms, measure time = 106 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:47:52.128 -07 000000012 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:52.178 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:47:52.178 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:52.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:52.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:52.178 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:52.178 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:52.178 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:52.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:52.188 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:52.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:52.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:52.188 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:52.198 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:47:52.198 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:47:52.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:52.248 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:52.448 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:52.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:52.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:52.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2504439280, 0x0, 559484976) start.
17-03-17 18:47:52.488 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:52.488 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:52.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 18:47:52.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2504439280, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:47:52.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:52.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:52.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:47:52.688 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:52.688 -07 000000012 INF: Autofocus start
17-03-17 18:47:52.688 -07 000000012 INF: MeasureProfile start
17-03-17 18:47:52.688 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:52.698 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:52.698 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:52.698 -07 000000012 INF: MeasureProfile done
17-03-17 18:47:52.698 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:47:52.698 -07 000000012 INF: Autofocus finished
17-03-17 18:47:52.898 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:52.898 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 18:47:52.908 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136872122488311. ----------
17-03-17 18:47:52.908 -07 000000610 INF: Cycle	17	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:52.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28422, sync = True, waitForSettling = True)
17-03-17 18:47:52.908 -07 000000610 INF: Z Motor: Moving to -0.130108 mm, started at -0.136872 mm, distance = 6.76 um
17-03-17 18:47:52.908 -07 000000610 INF: FPGA: Xmit ZDACW 28422\n [Z Motor]
17-03-17 18:47:52.908 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:47:52.918 -07 000000610 INF: FPGA: 'ZDACW 28422' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:47:52.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:52.918 -07 000000429 INF: FPGA: Recv ZDACR 28422
17-03-17 18:47:52.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:52.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:53.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.078 -07 000000478 INF: FPGA: Recv ZSGSRD 29541
17-03-17 18:47:53.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.088 -07 000000462 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:47:53.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.098 -07 000000478 INF: FPGA: Recv ZSGSRD 29541
17-03-17 18:47:53.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.108 -07 000000627 INF: FPGA: Recv ZSGSRD 29539
17-03-17 18:47:53.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29541
17-03-17 18:47:53.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:47:53.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.138 -07 000000627 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:47:53.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.148 -07 000000608 INF: FPGA: Recv ZSGSRD 29536
17-03-17 18:47:53.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29547
17-03-17 18:47:53.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:53.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29542
17-03-17 18:47:53.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:53.178 -07 000000608 INF: FPGA: Recv ZPIEZORD 25136
17-03-17 18:47:53.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:53.188 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.7 V.
17-03-17 18:47:53.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29543 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29542 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29536 (-129.3 uncal um), Max = 29549 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:47:53.188 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29543, posNoise = 6, negNoise = 7
17-03-17 18:47:53.188 -07 000000610 INF: Z Motor: After move to -0.130108, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:53.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:47:53.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:53.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:53.188 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:53.188 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:53.188 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:53.188 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:53.188 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:53.188 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:53.188 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:53.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:53.188 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:47:53.188 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:53.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:53.188 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:53.188 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:47:53.198 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:53.198 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:47:53.198 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:47:53.198 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:47:53.198 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:47:53.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28599 150\n [Camera]
17-03-17 18:47:53.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 18:47:53.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:53.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:53.808 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:53.808 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:53.808 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:47:53.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:53.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:53.808 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:53.808 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:53.808 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:47:53.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28599 780
17-03-17 18:47:54.148 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:54.188 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:47:54.188 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:47:54.188 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:54.188 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:47:54.188 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:54.188 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:47:54.188 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:47:54.188 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:54.198 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:54.198 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:47:54.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:54.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:54.338 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:54.338 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:54.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:47:54.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:54.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:54.338 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:54.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:54.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:47:54.528 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:54.528 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:54.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28599 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-17 18:47:54.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:54.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130113851315179. ------
17-03-17 18:47:54.648 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:54.648 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13646 mm
17-03-17 18:47:54.648 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:54.648 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29810, sync = True, waitForSettling = False)
17-03-17 18:47:54.648 -07 000000012 INF: Z Motor: Moving to -0.136461 mm, started at -0.130114 mm, distance = -6.35 um
17-03-17 18:47:54.648 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:54.648 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:47:54.648 -07 000000475 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:47:54.658 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:54.658 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:47:54.658 -07 000000415 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:47:54.668 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:47:54.668 -07 000000475 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:54.668 -07 000000012 INF: FPGA: Xmit ZDACW 29810\n [Z Motor]
17-03-17 18:47:54.668 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:47:54.668 -07 000000475 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:54.668 -07 000000475 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:47:54.678 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:54.678 -07 000000012 INF: FPGA: 'ZDACW 29810' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:47:54.698 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:54.698 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.96762,
17-03-17 18:47:54.708 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:54.708 -07 000000415 INF: FPGA: Recv ZDACR 29810
17-03-17 18:47:54.718 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 18:47:54.718 -07 000000012 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-17 18:47:54.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:47:54.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:47:54.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:54.728 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:47:54.738 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:47:54.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:54.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:54.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:47:54.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:47:54.738 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:47:54.878 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:54.878 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:47:55.068 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:47:55.068 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 18:47:55.108 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:55.108 -07 000000608 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:47:55.118 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:55.118 -07 000000475 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:55.118 -07 000000475 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:47:55.118 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.845 mm, average velocity = 2.091 mm/sec
17-03-17 18:47:56.068 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:56.068 -07 000000627 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:47:56.078 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:56.078 -07 000000475 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:56.098 -07 000000475 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:47:56.098 -07 000000475 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:47:56.098 -07 000000475 INF: Y Motor: Moved to 69.8643 after 1445 ms (table move)
17-03-17 18:47:56.098 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136461 mm (DAC = 29810)
17-03-17 18:47:56.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.098 -07 000000415 INF: FPGA: Recv ZSGSRD 30528
17-03-17 18:47:56.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:47:56.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.108 -07 000000476 INF: FPGA: Recv ZSGSRD 30533
17-03-17 18:47:56.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.118 -07 000000478 INF: FPGA: Recv ZSGSRD 30534
17-03-17 18:47:56.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.128 -07 000000593 INF: FPGA: Recv ZSGSRD 30528
17-03-17 18:47:56.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.138 -07 000000462 INF: FPGA: Recv ZSGSRD 30530
17-03-17 18:47:56.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.148 -07 000000476 INF: FPGA: Recv ZSGSRD 30534
17-03-17 18:47:56.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30527
17-03-17 18:47:56.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.168 -07 000000486 INF: FPGA: Recv ZSGSRD 30523
17-03-17 18:47:56.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.178 -07 000000462 INF: FPGA: Recv ZSGSRD 30530
17-03-17 18:47:56.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:56.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30538
17-03-17 18:47:56.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.198 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:56.198 -07 000000424 INF: FPGA: Recv ZPIEZORD 26409
17-03-17 18:47:56.208 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.208 -07 000000569 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.1 V.
17-03-17 18:47:56.208 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30530 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30530 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30523 (-135.6 uncal um), Max = 30538 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:47:56.208 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30530, posNoise = 8, negNoise = 7
17-03-17 18:47:56.208 -07 000000569 INF: Z Motor: After move to -0.136461, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:56.208 -07 000000569 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:47:56.208 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:47:56.258 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:47:56.258 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:47:56.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:56.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:56.258 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:56.258 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:56.258 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:47:56.258 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:56.258 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:47:56.258 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:47:56.268 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:56.268 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:47:56.268 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:47:56.268 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:47:56.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:47:56.318 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:47:56.518 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:47:56.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:47:56.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:47:56.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:47:56.558 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:47:56.558 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:47:56.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:47:56.628 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:47:56.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:47:56.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:56.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:47:56.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:47:56.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:47:56.658 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:56.658 -07 000000476 INF: Autofocus start
17-03-17 18:47:56.658 -07 000000476 INF: MeasureProfile start
17-03-17 18:47:56.658 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:56.668 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:47:56.668 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:47:56.668 -07 000000476 INF: MeasureProfile done
17-03-17 18:47:56.668 -07 000000476 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:47:56.668 -07 000000476 INF: Autofocus finished
17-03-17 18:47:56.868 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:47:56.868 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:47:56.868 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136454548699097. ----------
17-03-17 18:47:56.868 -07 000000610 INF: Cycle	17	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:47:56.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28351, sync = True, waitForSettling = True)
17-03-17 18:47:56.878 -07 000000610 INF: Z Motor: Moving to -0.129783 mm, started at -0.136455 mm, distance = 6.67 um
17-03-17 18:47:56.878 -07 000000610 INF: FPGA: Xmit ZDACW 28351\n [Z Motor]
17-03-17 18:47:56.878 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:47:56.888 -07 000000610 INF: FPGA: 'ZDACW 28351' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:56.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:56.888 -07 000000486 INF: FPGA: Recv ZDACR 28351
17-03-17 18:47:56.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:56.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:47:57.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29497
17-03-17 18:47:57.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:47:57.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.058 -07 000000486 INF: FPGA: Recv ZSGSRD 29494
17-03-17 18:47:57.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.068 -07 000000429 INF: FPGA: Recv ZSGSRD 29490
17-03-17 18:47:57.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.078 -07 000000486 INF: FPGA: Recv ZSGSRD 29493
17-03-17 18:47:57.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29495
17-03-17 18:47:57.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.098 -07 000000486 INF: FPGA: Recv ZSGSRD 29495
17-03-17 18:47:57.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.108 -07 000000476 INF: FPGA: Recv ZSGSRD 29492
17-03-17 18:47:57.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.118 -07 000000424 INF: FPGA: Recv ZSGSRD 29495
17-03-17 18:47:57.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.128 -07 000000561 INF: FPGA: Recv ZSGSRD 29495
17-03-17 18:47:57.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:47:57.138 -07 000000429 INF: FPGA: Recv ZSGSRD 29490
17-03-17 18:47:57.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:47:57.148 -07 000000561 INF: FPGA: Recv ZPIEZORD 25066
17-03-17 18:47:57.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:47:57.158 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -9.7 V.
17-03-17 18:47:57.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29494 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29494 (-129.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29490 (-129.0 uncal um), Max = 29497 (-129.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:47:57.158 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29494, posNoise = 3, negNoise = 4
17-03-17 18:47:57.158 -07 000000610 INF: Z Motor: After move to -0.129783, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:47:57.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:47:57.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:47:57.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:47:57.158 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:47:57.158 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:47:57.158 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:47:57.158 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:47:57.158 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:47:57.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:47:57.158 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:47:57.158 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:47:57.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:47:57.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:47:57.168 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:47:57.168 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:47:57.168 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:47:57.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:47:57.178 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:47:57.178 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:47:57.178 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:47:57.178 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:47:57.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28528 150\n [Camera]
17-03-17 18:47:57.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:47:57.768 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:47:57.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:47:57.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:57.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:47:57.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:47:57.778 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:57.778 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:57.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:47:57.788 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:57.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:47:57.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28528 780
17-03-17 18:47:58.118 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:47:58.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:47:58.178 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:47:58.178 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:58.178 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:58.178 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:47:58.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:47:58.178 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:47:58.178 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:58.188 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:47:58.198 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:47:58.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:47:58.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:47:58.308 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:47:58.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:47:58.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:47:58.308 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:47:58.308 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:47:58.308 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:47:58.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:47:58.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 18:47:58.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:47:58.498 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:47:58.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28528 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:47:58.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:47:58.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129799064920233. ------
17-03-17 18:47:58.498 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:47:58.498 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13618 mm
17-03-17 18:47:58.498 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:47:58.508 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:47:58.508 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29748, sync = True, waitForSettling = False)
17-03-17 18:47:58.508 -07 000000486 INF: Z Motor: Moving to -0.136178 mm, started at -0.129799 mm, distance = -6.38 um
17-03-17 18:47:58.508 -07 000000486 INF: FPGA: Xmit ZDACW 29748\n [Z Motor]
17-03-17 18:47:58.508 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:47:58.628 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:47:58.628 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 18:47:58.628 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:47:58.628 -07 000000486 INF: FPGA: 'ZDACW 29748' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 18:47:58.628 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:47:58.628 -07 000000569 INF: FPGA: Recv ZDACR 29748
17-03-17 18:47:58.638 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:58.638 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:47:58.638 -07 000000486 INF: Z Motor: MoveAbsStepped took 128 ms (did NOT wait for settling yet))
17-03-17 18:47:58.648 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:58.648 -07 000000501 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:47:58.658 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:47:58.658 -07 000000424 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:58.658 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:47:58.658 -07 000000424 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:47:58.658 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:47:58.708 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:47:58.708 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:47:58.708 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:58.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:47:58.708 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:47:58.708 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:47:58.708 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:58.708 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:47:58.708 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:47:58.718 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:47:58.838 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:47:58.838 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 18:47:59.028 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:47:59.028 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 18:47:59.068 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:47:59.068 -07 000000626 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:47:59.078 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:47:59.078 -07 000000424 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:47:59.078 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:47:59.078 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-17 18:48:00.028 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:00.028 -07 000000569 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:48:00.038 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:00.038 -07 000000424 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:00.058 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:48:00.058 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:48:00.058 -07 000000424 INF: Y Motor: Moved to 70.6895 after 1429 ms (table move)
17-03-17 18:48:00.058 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136178 mm (DAC = 29748)
17-03-17 18:48:00.058 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.058 -07 000000424 INF: FPGA: Recv ZSGSRD 30483
17-03-17 18:48:00.068 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:48:00.078 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.078 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.990831,
17-03-17 18:48:00.078 -07 000000462 INF: FPGA: Recv ZSGSRD 30491
17-03-17 18:48:00.088 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:48:00.088 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.088 -07 000000415 INF: FPGA: Recv ZSGSRD 30490
17-03-17 18:48:00.098 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:00.108 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.108 -07 000000486 INF: FPGA: Recv ZSGSRD 30488
17-03-17 18:48:00.118 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:48:00.118 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30489
17-03-17 18:48:00.128 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:00.138 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.138 -07 000000480 INF: FPGA: Recv ZSGSRD 30482
17-03-17 18:48:00.148 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:48:00.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30490
17-03-17 18:48:00.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:00.178 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.178 -07 000000486 INF: FPGA: Recv ZSGSRD 30490
17-03-17 18:48:00.188 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:48:00.188 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.188 -07 000000626 INF: FPGA: Recv ZSGSRD 30487
17-03-17 18:48:00.198 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:00.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:00.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30483
17-03-17 18:48:00.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:00.208 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:00.208 -07 000000593 INF: FPGA: Recv ZPIEZORD 26373
17-03-17 18:48:00.218 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:00.218 -07 000000476 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -9.1 V.
17-03-17 18:48:00.218 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30487 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30488 (-135.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30482 (-135.4 uncal um), Max = 30491 (-135.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:48:00.218 -07 000000476 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30487, posNoise = 4, negNoise = 5
17-03-17 18:48:00.218 -07 000000476 INF: Z Motor: After move to -0.136178, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:00.218 -07 000000476 INF: Z Motor: Settle wait time = 1553 ms, measure time = 155 ms (allowed 150 ms), total time = 1708 ms
17-03-17 18:48:00.218 -07 000000476 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 18:48:00.218 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms
17-03-17 18:48:00.218 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:48:00.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:00.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:00.218 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:00.218 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:00.218 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:48:00.218 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:00.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:00.228 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:48:00.228 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:48:00.228 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:48:00.238 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:48:00.238 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:48:00.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:48:00.288 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:48:00.488 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:48:00.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:48:00.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:48:00.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:48:00.528 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:48:00.528 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:48:00.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:48:00.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 18:48:00.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:00.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:48:00.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 18:48:00.628 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:00.628 -07 000000501 INF: Autofocus start
17-03-17 18:48:00.628 -07 000000501 INF: MeasureProfile start
17-03-17 18:48:00.628 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:00.638 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:00.638 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:48:00.638 -07 000000501 INF: MeasureProfile done
17-03-17 18:48:00.638 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:48:00.638 -07 000000501 INF: Autofocus finished
17-03-17 18:48:00.838 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:48:00.838 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:48:00.838 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136178307577001. ----------
17-03-17 18:48:00.838 -07 000000610 INF: Cycle	17	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:48:00.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28243, sync = True, waitForSettling = True)
17-03-17 18:48:00.848 -07 000000610 INF: Z Motor: Moving to -0.129288 mm, started at -0.136178 mm, distance = 6.89 um
17-03-17 18:48:00.848 -07 000000610 INF: FPGA: Xmit ZDACW 28243\n [Z Motor]
17-03-17 18:48:00.848 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:48:00.858 -07 000000610 INF: FPGA: 'ZDACW 28243' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:48:00.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:00.858 -07 000000476 INF: FPGA: Recv ZDACR 28243
17-03-17 18:48:00.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:00.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:48:01.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.018 -07 000000627 INF: FPGA: Recv ZSGSRD 29412
17-03-17 18:48:01.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.028 -07 000000480 INF: FPGA: Recv ZSGSRD 29416
17-03-17 18:48:01.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.048 -07 000000429 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:48:01.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:48:01.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29406
17-03-17 18:48:01.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.068 -07 000000569 INF: FPGA: Recv ZSGSRD 29414
17-03-17 18:48:01.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.078 -07 000000012 INF: FPGA: Recv ZSGSRD 29417
17-03-17 18:48:01.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.088 -07 000000480 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:48:01.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.098 -07 000000382 INF: FPGA: Recv ZSGSRD 29410
17-03-17 18:48:01.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.108 -07 000000569 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:48:01.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:01.118 -07 000000415 INF: FPGA: Recv ZSGSRD 29417
17-03-17 18:48:01.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:01.128 -07 000000486 INF: FPGA: Recv ZPIEZORD 24961
17-03-17 18:48:01.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:01.138 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.8 V.
17-03-17 18:48:01.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29415 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29416 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29406 (-128.5 uncal um), Max = 29418 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:48:01.138 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29415, posNoise = 3, negNoise = 9
17-03-17 18:48:01.138 -07 000000610 INF: Z Motor: After move to -0.129288, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:01.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 18:48:01.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:01.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:01.138 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:01.138 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:01.138 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:48:01.138 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:48:01.138 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:01.138 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:48:01.138 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:01.138 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:48:01.138 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:48:01.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:48:01.148 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:48:01.148 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:48:01.148 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:48:01.148 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:48:01.148 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:48:01.148 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:48:01.158 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:48:01.158 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:48:01.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28420 150\n [Camera]
17-03-17 18:48:01.358 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:48:01.628 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:48:01.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:48:01.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:48:01.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:48:01.748 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:01.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:48:01.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:48:01.758 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:01.758 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:01.758 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:48:01.758 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:01.758 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:48:01.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28420 780
17-03-17 18:48:02.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:48:02.128 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:48:02.138 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:48:02.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:02.138 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:48:02.138 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:48:02.138 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:02.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:02.138 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:48:02.138 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:02.148 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:48:02.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:48:02.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:48:02.288 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:02.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:48:02.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:48:02.288 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:02.288 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:02.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:48:02.298 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:02.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:48:02.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:48:02.478 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:48:02.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28420 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-17 18:48:02.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:48:02.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129291552161034. ------
17-03-17 18:48:02.478 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:02.478 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13593 mm
17-03-17 18:48:02.478 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:48:02.488 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29694, sync = True, waitForSettling = False)
17-03-17 18:48:02.488 -07 000000627 INF: Z Motor: Moving to -0.135930 mm, started at -0.129292 mm, distance = -6.64 um
17-03-17 18:48:02.488 -07 000000627 INF: FPGA: Xmit ZDACW 29694\n [Z Motor]
17-03-17 18:48:02.488 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:48:02.488 -07 000000012 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 18:48:02.498 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:02.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:48:02.688 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:48:02.688 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:02.698 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:48:02.698 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:48:02.698 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:02.698 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:02.698 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:48:02.698 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:02.708 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:48:02.708 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:02.708 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:48:02.708 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 222 ms to get response, and 223 ms overall
17-03-17 18:48:02.708 -07 000000627 INF: FPGA: 'ZDACW 29694' command took 0 ms to send, 212 ms to get response, and 219 ms overall
17-03-17 18:48:02.708 -07 000000382 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:48:02.708 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 203 ms to get response, and 219 ms overall
17-03-17 18:48:02.708 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:02.708 -07 000000012 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:02.708 -07 000000012 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:48:02.708 -07 000000012 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:48:02.708 -07 000000382 INF: FPGA: Recv ZDACR 29694
17-03-17 18:48:02.718 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:02.718 -07 000000627 INF: Z Motor: MoveAbsStepped took 227 ms (did NOT wait for settling yet))
17-03-17 18:48:02.718 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:48:02.728 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:48:02.918 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:48:02.918 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-17 18:48:03.098 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:48:03.098 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:48:03.138 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:03.138 -07 000000626 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:48:03.148 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:48:03.148 -07 000000012 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:03.148 -07 000000012 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:48:03.148 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-17 18:48:04.098 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:04.098 -07 000000501 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:48:04.108 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:04.108 -07 000000012 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:04.128 -07 000000012 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:48:04.128 -07 000000012 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:48:04.128 -07 000000012 INF: Y Motor: Moved to 71.5200 after 1638 ms (table move)
17-03-17 18:48:04.128 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135930 mm (DAC = 29694)
17-03-17 18:48:04.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.128 -07 000000012 INF: FPGA: Recv ZSGSRD 30447
17-03-17 18:48:04.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:48:04.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.138 -07 000000012 INF: FPGA: Recv ZSGSRD 30439
17-03-17 18:48:04.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.148 -07 000000012 INF: FPGA: Recv ZSGSRD 30444
17-03-17 18:48:04.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.158 -07 000000501 INF: FPGA: Recv ZSGSRD 30453
17-03-17 18:48:04.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.168 -07 000000627 INF: FPGA: Recv ZSGSRD 30452
17-03-17 18:48:04.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.178 -07 000000501 INF: FPGA: Recv ZSGSRD 30455
17-03-17 18:48:04.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30452
17-03-17 18:48:04.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.198 -07 000000627 INF: FPGA: Recv ZSGSRD 30447
17-03-17 18:48:04.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.208 -07 000000626 INF: FPGA: Recv ZSGSRD 30444
17-03-17 18:48:04.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:04.218 -07 000000626 INF: FPGA: Recv ZSGSRD 30443
17-03-17 18:48:04.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.228 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:04.228 -07 000000012 INF: FPGA: Recv ZPIEZORD 26358
17-03-17 18:48:04.238 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.238 -07 000000415 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.0 V.
17-03-17 18:48:04.238 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30448 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30447 (-135.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30439 (-135.1 uncal um), Max = 30455 (-135.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:48:04.238 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30448, posNoise = 7, negNoise = 9
17-03-17 18:48:04.238 -07 000000415 INF: Z Motor: After move to -0.135930, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:04.238 -07 000000415 INF: Z Motor: Settle wait time = 1642 ms, measure time = 105 ms (allowed 150 ms), total time = 1747 ms
17-03-17 18:48:04.238 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:48:04.288 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1800 ms
17-03-17 18:48:04.288 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:48:04.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:04.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:04.288 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:04.288 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:04.288 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:48:04.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:04.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:04.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:48:04.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:48:04.298 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:48:04.308 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:48:04.308 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:48:04.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:48:04.358 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:48:04.558 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:48:04.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:48:04.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:48:04.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:48:04.598 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:48:04.598 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:48:04.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:48:04.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:48:04.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:04.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:48:04.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:48:04.698 -07 000000627 INF: Autofocus start
17-03-17 18:48:04.698 -07 000000627 INF: MeasureProfile start
17-03-17 18:48:04.698 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:04.698 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:04.708 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:04.708 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:48:04.708 -07 000000627 INF: MeasureProfile done
17-03-17 18:48:04.708 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:48:04.708 -07 000000627 INF: Autofocus finished
17-03-17 18:48:04.908 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:48:04.908 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:48:04.908 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.135927763303473. ----------
17-03-17 18:48:04.918 -07 000000610 INF: Cycle	17	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:48:04.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28201, sync = True, waitForSettling = True)
17-03-17 18:48:04.918 -07 000000610 INF: Z Motor: Moving to -0.129096 mm, started at -0.135928 mm, distance = 6.83 um
17-03-17 18:48:04.918 -07 000000610 INF: FPGA: Xmit ZDACW 28201\n [Z Motor]
17-03-17 18:48:04.918 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:48:04.928 -07 000000610 INF: FPGA: 'ZDACW 28201' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:48:04.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:04.928 -07 000000382 INF: FPGA: Recv ZDACR 28201
17-03-17 18:48:04.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:04.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:48:05.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.088 -07 000000382 INF: FPGA: Recv ZSGSRD 29394
17-03-17 18:48:05.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:05.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.098 -07 000000382 INF: FPGA: Recv ZSGSRD 29381
17-03-17 18:48:05.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.108 -07 000000382 INF: FPGA: Recv ZSGSRD 29387
17-03-17 18:48:05.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.118 -07 000000382 INF: FPGA: Recv ZSGSRD 29384
17-03-17 18:48:05.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29387
17-03-17 18:48:05.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.138 -07 000000475 INF: FPGA: Recv ZSGSRD 29391
17-03-17 18:48:05.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29379
17-03-17 18:48:05.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.158 -07 000000475 INF: FPGA: Recv ZSGSRD 29392
17-03-17 18:48:05.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.168 -07 000000475 INF: FPGA: Recv ZSGSRD 29387
17-03-17 18:48:05.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:05.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29387
17-03-17 18:48:05.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:48:05.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:05.198 -07 000000462 INF: FPGA: Recv ZPIEZORD 24974
17-03-17 18:48:05.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:05.208 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.7 V.
17-03-17 18:48:05.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29387 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29387 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29379 (-128.3 uncal um), Max = 29394 (-128.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:48:05.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29387, posNoise = 7, negNoise = 8
17-03-17 18:48:05.208 -07 000000610 INF: Z Motor: After move to -0.129096, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:05.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 18:48:05.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:05.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:05.208 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:05.208 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:05.208 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:48:05.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:05.208 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:48:05.208 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:48:05.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:48:05.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:48:05.208 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:48:05.208 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:48:05.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:48:05.218 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:48:05.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:48:05.218 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:48:05.218 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:48:05.218 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:48:05.228 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:48:05.228 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:48:05.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28378 150\n [Camera]
17-03-17 18:48:05.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:48:05.498 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.990831,
17-03-17 18:48:05.818 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:48:05.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:48:05.818 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:05.818 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:05.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:48:05.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:48:05.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:48:05.828 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:05.828 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:05.828 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:48:06.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28378 780
17-03-17 18:48:06.168 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:48:06.198 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:48:06.198 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:48:06.198 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:06.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:48:06.198 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:48:06.198 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:06.208 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:06.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:48:06.208 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:48:06.218 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:48:06.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:48:06.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:48:06.358 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:06.358 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:06.358 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:48:06.358 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:48:06.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:48:06.358 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:06.358 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:06.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:48:06.548 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:48:06.548 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:48:06.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28378 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:48:06.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:48:06.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129111674221064. ------
17-03-17 18:48:06.658 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:48:06.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:48:06.658 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:06.658 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13511 mm
17-03-17 18:48:06.658 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:48:06.658 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:06.668 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:48:06.668 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:48:06.668 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29515, sync = True, waitForSettling = False)
17-03-17 18:48:06.668 -07 000000561 INF: Z Motor: Moving to -0.135111 mm, started at -0.129112 mm, distance = -6.00 um
17-03-17 18:48:06.668 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:48:06.668 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:48:06.678 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:06.678 -07 000000501 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:48:06.688 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:48:06.688 -07 000000462 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:06.688 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:48:06.688 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:48:06.688 -07 000000561 INF: FPGA: Xmit ZDACW 29515\n [Z Motor]
17-03-17 18:48:06.688 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:48:06.698 -07 000000561 INF: FPGA: 'ZDACW 29515' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:48:06.698 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:06.698 -07 000000382 INF: FPGA: Recv ZDACR 29515
17-03-17 18:48:06.708 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:48:06.708 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:06.708 -07 000000561 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:48:06.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:48:06.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:48:06.748 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:06.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:48:06.748 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:48:06.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:06.758 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:06.758 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:48:06.758 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:48:06.758 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:48:06.868 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:48:06.868 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:48:07.078 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:48:07.078 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:48:07.118 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:07.118 -07 000000475 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:48:07.128 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:07.128 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:07.128 -07 000000462 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:48:07.128 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:48:08.078 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:08.078 -07 000000475 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:48:08.088 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:08.088 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:08.108 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:48:08.108 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:48:08.108 -07 000000462 INF: Y Motor: Moved to 72.3501 after 1441 ms (table move)
17-03-17 18:48:08.108 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135111 mm (DAC = 29515)
17-03-17 18:48:08.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30321
17-03-17 18:48:08.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:48:08.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.118 -07 000000478 INF: FPGA: Recv ZSGSRD 30315
17-03-17 18:48:08.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.128 -07 000000475 INF: FPGA: Recv ZSGSRD 30311
17-03-17 18:48:08.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:48:08.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30327
17-03-17 18:48:08.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.158 -07 000000462 INF: FPGA: Recv ZSGSRD 30327
17-03-17 18:48:08.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30325
17-03-17 18:48:08.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.178 -07 000000480 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:48:08.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.188 -07 000000608 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:48:08.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:08.198 -07 000000462 INF: FPGA: Recv ZSGSRD 30321
17-03-17 18:48:08.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:48:08.208 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:08.208 -07 000000608 INF: FPGA: Recv ZPIEZORD 26220
17-03-17 18:48:08.218 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.218 -07 000000415 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.0 V.
17-03-17 18:48:08.218 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30321 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30322 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30311 (-134.3 uncal um), Max = 30327 (-134.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:48:08.218 -07 000000415 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30321, posNoise = 6, negNoise = 10
17-03-17 18:48:08.218 -07 000000415 INF: Z Motor: After move to -0.135111, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:08.218 -07 000000415 INF: Z Motor: Settle wait time = 1444 ms, measure time = 106 ms (allowed 150 ms), total time = 1550 ms
17-03-17 18:48:08.218 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:48:08.268 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:48:08.268 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:48:08.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:08.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:08.268 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:08.268 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:08.268 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:48:08.268 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:08.268 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:08.268 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:48:08.278 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:48:08.278 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:48:08.288 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:48:08.288 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:48:08.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:48:08.338 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:48:08.538 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:48:08.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:48:08.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:48:08.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:48:08.578 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:48:08.578 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:48:08.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 18:48:08.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:48:08.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:08.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:48:08.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 18:48:08.678 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:08.678 -07 000000608 INF: Autofocus start
17-03-17 18:48:08.678 -07 000000608 INF: MeasureProfile start
17-03-17 18:48:08.678 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:08.688 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:08.688 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:48:08.688 -07 000000608 INF: MeasureProfile done
17-03-17 18:48:08.688 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:48:08.688 -07 000000608 INF: Autofocus finished
17-03-17 18:48:08.888 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:48:08.888 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:48:08.888 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135111888361469. ----------
17-03-17 18:48:08.888 -07 000000610 INF: Cycle	17	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:48:08.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28039, sync = True, waitForSettling = True)
17-03-17 18:48:08.898 -07 000000610 INF: Z Motor: Moving to -0.128354 mm, started at -0.135112 mm, distance = 6.76 um
17-03-17 18:48:08.898 -07 000000610 INF: FPGA: Xmit ZDACW 28039\n [Z Motor]
17-03-17 18:48:08.898 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:48:08.908 -07 000000610 INF: FPGA: 'ZDACW 28039' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:48:08.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:08.908 -07 000000415 INF: FPGA: Recv ZDACR 28039
17-03-17 18:48:08.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:08.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:48:09.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.068 -07 000000608 INF: FPGA: Recv ZSGSRD 29267
17-03-17 18:48:09.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:09.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.078 -07 000000462 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:48:09.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.088 -07 000000480 INF: FPGA: Recv ZSGSRD 29268
17-03-17 18:48:09.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.098 -07 000000462 INF: FPGA: Recv ZSGSRD 29271
17-03-17 18:48:09.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.108 -07 000000475 INF: FPGA: Recv ZSGSRD 29269
17-03-17 18:48:09.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:48:09.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29273
17-03-17 18:48:09.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.138 -07 000000462 INF: FPGA: Recv ZSGSRD 29270
17-03-17 18:48:09.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29265
17-03-17 18:48:09.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:09.158 -07 000000608 INF: FPGA: Recv ZSGSRD 29270
17-03-17 18:48:09.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:09.168 -07 000000480 INF: FPGA: Recv ZPIEZORD 24857
17-03-17 18:48:09.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:09.178 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.7 V.
17-03-17 18:48:09.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29270 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29270 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29265 (-127.6 uncal um), Max = 29274 (-127.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:48:09.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29270, posNoise = 4, negNoise = 5
17-03-17 18:48:09.178 -07 000000610 INF: Z Motor: After move to -0.128354, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:09.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:48:09.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:09.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:09.178 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:09.178 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:09.178 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:48:09.178 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:09.178 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:48:09.178 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:48:09.178 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:09.178 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:48:09.178 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:48:09.178 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:48:09.188 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:48:09.188 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:48:09.188 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:48:09.188 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:48:09.188 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:48:09.188 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:48:09.198 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:48:09.198 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:48:09.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28216 150\n [Camera]
17-03-17 18:48:09.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:48:09.798 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:48:09.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:48:09.798 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:09.798 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:48:09.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:48:09.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:09.798 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:09.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:48:09.808 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:09.808 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:48:09.988 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28216 780
17-03-17 18:48:10.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:48:10.168 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:48:10.168 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:48:10.168 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:10.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:10.178 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:48:10.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:48:10.178 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:48:10.178 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:10.178 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:10.188 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:48:10.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:48:10.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:48:10.328 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:10.328 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:48:10.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:48:10.328 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:10.338 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:10.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:48:10.338 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:10.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:48:10.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:48:10.518 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:48:10.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28216 150' command took 2 ms to send, 1315 ms to get response, and 1322 ms overall
17-03-17 18:48:10.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:48:10.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128360041400478. ------
17-03-17 18:48:10.638 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13492 mm
17-03-17 18:48:10.638 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:48:10.638 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29474, sync = True, waitForSettling = False)
17-03-17 18:48:10.638 -07 000000480 INF: Z Motor: Moving to -0.134923 mm, started at -0.128360 mm, distance = -6.56 um
17-03-17 18:48:10.638 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:48:10.638 -07 000000382 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:48:10.648 -07 000000480 INF: FPGA: Xmit ZDACW 29474\n [Z Motor]
17-03-17 18:48:10.648 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:48:10.658 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:10.658 -07 000000480 INF: FPGA: 'ZDACW 29474' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:48:10.658 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:10.668 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:48:10.668 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:10.668 -07 000000608 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:48:10.678 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:10.678 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:48:10.678 -07 000000382 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:10.678 -07 000000382 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:48:10.678 -07 000000382 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:48:10.678 -07 000000569 INF: FPGA: Recv ZDACR 29474
17-03-17 18:48:10.688 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:48:10.688 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:48:10.688 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:48:10.698 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:48:10.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:48:10.718 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:48:10.718 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:10.718 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:10.718 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:48:10.718 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:48:10.718 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:10.728 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:10.728 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:48:10.728 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:48:10.888 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:48:10.888 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:48:10.958 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.999021,
17-03-17 18:48:11.068 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:48:11.068 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:48:11.108 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:11.108 -07 000000480 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:48:11.118 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:11.118 -07 000000382 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:11.118 -07 000000382 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:48:11.118 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:48:11.628 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:48:11.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:48:12.068 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:12.068 -07 000000480 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:48:12.078 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:12.078 -07 000000382 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:12.098 -07 000000382 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:48:12.098 -07 000000382 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:48:12.098 -07 000000382 INF: Y Motor: Moved to 73.1768 after 1454 ms (table move)
17-03-17 18:48:12.098 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134923 mm (DAC = 29474)
17-03-17 18:48:12.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.108 -07 000000415 INF: FPGA: Recv ZSGSRD 30292
17-03-17 18:48:12.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:48:12.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.138 -07 000000429 INF: FPGA: Recv ZSGSRD 30294
17-03-17 18:48:12.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:48:12.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.148 -07 000000424 INF: FPGA: Recv ZSGSRD 30295
17-03-17 18:48:12.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30298
17-03-17 18:48:12.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.168 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30293
17-03-17 18:48:12.178 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.178 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.178 -07 000000569 INF: FPGA: Recv ZSGSRD 30285
17-03-17 18:48:12.188 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.188 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.188 -07 000000569 INF: FPGA: Recv ZSGSRD 30292
17-03-17 18:48:12.198 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.198 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.198 -07 000000561 INF: FPGA: Recv ZSGSRD 30287
17-03-17 18:48:12.208 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.208 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30294
17-03-17 18:48:12.218 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.218 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:12.218 -07 000000475 INF: FPGA: Recv ZSGSRD 30294
17-03-17 18:48:12.228 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.228 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:12.228 -07 000000569 INF: FPGA: Recv ZPIEZORD 26168
17-03-17 18:48:12.238 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.238 -07 000000462 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.1 V.
17-03-17 18:48:12.238 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30292 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30294 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30285 (-134.1 uncal um), Max = 30298 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:48:12.238 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30292, posNoise = 6, negNoise = 7
17-03-17 18:48:12.238 -07 000000462 INF: Z Motor: After move to -0.134923, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:12.238 -07 000000462 INF: Z Motor: Settle wait time = 1458 ms, measure time = 135 ms (allowed 150 ms), total time = 1593 ms
17-03-17 18:48:12.238 -07 000000462 INF: Z Motor: Waiting extra 15 ms after reading position to reach expected total of 150 ms
17-03-17 18:48:12.258 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 18:48:12.258 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:48:12.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:12.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:12.258 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:12.258 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:12.258 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:48:12.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:12.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:12.258 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:48:12.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:48:12.268 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:48:12.278 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:48:12.278 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:48:12.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:48:12.318 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:48:12.518 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:48:12.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:48:12.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:48:12.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:48:12.558 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:48:12.558 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:48:12.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:48:12.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:48:12.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:12.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:48:12.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:48:12.658 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:12.658 -07 000000593 INF: Autofocus start
17-03-17 18:48:12.658 -07 000000593 INF: MeasureProfile start
17-03-17 18:48:12.658 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:12.668 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:48:12.668 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:48:12.668 -07 000000593 INF: MeasureProfile done
17-03-17 18:48:12.668 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:48:12.668 -07 000000593 INF: Autofocus finished
17-03-17 18:48:12.868 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:48:12.868 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:48:12.868 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134925586209358. ----------
17-03-17 18:48:12.878 -07 000000610 INF: Cycle	17	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:48:12.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27981, sync = True, waitForSettling = True)
17-03-17 18:48:12.878 -07 000000610 INF: Z Motor: Moving to -0.128089 mm, started at -0.134926 mm, distance = 6.84 um
17-03-17 18:48:12.878 -07 000000610 INF: FPGA: Xmit ZDACW 27981\n [Z Motor]
17-03-17 18:48:12.878 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:48:12.888 -07 000000610 INF: FPGA: 'ZDACW 27981' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:12.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:12.888 -07 000000618 INF: FPGA: Recv ZDACR 27981
17-03-17 18:48:12.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:12.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:48:13.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.048 -07 000000561 INF: FPGA: Recv ZSGSRD 29229
17-03-17 18:48:13.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:13.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.058 -07 000000618 INF: FPGA: Recv ZSGSRD 29225
17-03-17 18:48:13.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.068 -07 000000478 INF: FPGA: Recv ZSGSRD 29236
17-03-17 18:48:13.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.078 -07 000000618 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:48:13.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.088 -07 000000593 INF: FPGA: Recv ZSGSRD 29230
17-03-17 18:48:13.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.098 -07 000000561 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:48:13.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.108 -07 000000478 INF: FPGA: Recv ZSGSRD 29233
17-03-17 18:48:13.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.118 -07 000000569 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:48:13.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.128 -07 000000618 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:48:13.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:13.138 -07 000000480 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:48:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:13.148 -07 000000618 INF: FPGA: Recv ZPIEZORD 24781
17-03-17 18:48:13.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:13.158 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.8 V.
17-03-17 18:48:13.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29230 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29230 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29225 (-127.3 uncal um), Max = 29236 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:48:13.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29230, posNoise = 6, negNoise = 5
17-03-17 18:48:13.158 -07 000000610 INF: Z Motor: After move to -0.128089, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:13.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:48:13.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:13.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:13.158 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:13.158 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:48:13.158 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:48:13.158 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:48:13.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:13.158 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:13.158 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:48:13.158 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:48:13.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:13.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:48:13.168 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:48:13.168 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:48:13.168 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:48:13.168 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:48:13.178 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:48:13.178 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:48:13.178 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:48:13.178 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:48:13.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28158 150\n [Camera]
17-03-17 18:48:13.378 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:48:13.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:48:13.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:48:13.778 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:13.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:48:13.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:48:13.778 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:13.778 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:13.778 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:48:13.778 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:13.778 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:48:13.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28158 780
17-03-17 18:48:14.118 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:48:14.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:48:14.158 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:48:14.158 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:14.158 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:48:14.158 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:48:14.158 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:14.158 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:48:14.158 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:48:14.158 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:48:14.168 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:48:14.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:48:14.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:48:14.308 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:14.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:48:14.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:48:14.318 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:14.318 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:14.318 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 18:48:14.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:14.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:48:14.498 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:48:14.498 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:48:14.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28158 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-17 18:48:14.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:48:14.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128103072914808. ------
17-03-17 18:48:14.508 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:14.508 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13453 mm
17-03-17 18:48:14.508 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:48:14.508 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:14.508 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29388, sync = True, waitForSettling = False)
17-03-17 18:48:14.508 -07 000000480 INF: Z Motor: Moving to -0.134530 mm, started at -0.128103 mm, distance = -6.43 um
17-03-17 18:48:14.508 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:48:14.508 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:48:14.518 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:14.518 -07 000000480 INF: FPGA: Xmit ZDACW 29388\n [Z Motor]
17-03-17 18:48:14.518 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:48:14.528 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:14.528 -07 000000480 INF: FPGA: 'ZDACW 29388' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:48:14.528 -07 000000561 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:48:14.538 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:48:14.538 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:48:14.538 -07 000000618 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:14.538 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:48:14.538 -07 000000618 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:48:14.548 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:14.548 -07 000000561 INF: FPGA: Recv ZDACR 29388
17-03-17 18:48:14.558 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:48:14.558 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:48:14.558 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:48:14.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:48:14.718 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:48:14.718 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:14.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:48:14.718 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:48:14.718 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:14.718 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:14.718 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:48:14.718 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:14.728 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:48:14.738 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:48:14.738 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:48:14.928 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:48:14.928 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:48:14.958 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:14.958 -07 000000476 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:48:14.968 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:48:14.968 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:14.968 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:48:14.968 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 18:48:15.918 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:15.918 -07 000000415 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:48:15.928 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:15.928 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:15.938 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:48:15.938 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:48:15.938 -07 000000618 INF: Y Motor: Moved to 74.0088 after 1429 ms (table move)
17-03-17 18:48:15.938 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134530 mm (DAC = 29388)
17-03-17 18:48:15.938 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:15.948 -07 000000593 INF: FPGA: Recv ZSGSRD 30237
17-03-17 18:48:15.948 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:48:15.948 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:15.948 -07 000000486 INF: FPGA: Recv ZSGSRD 30239
17-03-17 18:48:15.958 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:48:15.958 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:15.958 -07 000000618 INF: FPGA: Recv ZSGSRD 30225
17-03-17 18:48:15.968 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:15.968 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:15.968 -07 000000475 INF: FPGA: Recv ZSGSRD 30233
17-03-17 18:48:15.978 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:15.978 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:15.978 -07 000000501 INF: FPGA: Recv ZSGSRD 30230
17-03-17 18:48:15.988 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:15.988 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:15.988 -07 000000480 INF: FPGA: Recv ZSGSRD 30240
17-03-17 18:48:15.998 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.008 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.008 -07 000000593 INF: FPGA: Recv ZSGSRD 30232
17-03-17 18:48:16.018 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:48:16.018 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.018 -07 000000569 INF: FPGA: Recv ZSGSRD 30230
17-03-17 18:48:16.028 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.028 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.028 -07 000000626 INF: FPGA: Recv ZSGSRD 30224
17-03-17 18:48:16.038 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.038 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.038 -07 000000462 INF: FPGA: Recv ZSGSRD 30232
17-03-17 18:48:16.048 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.048 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:16.048 -07 000000569 INF: FPGA: Recv ZPIEZORD 26103
17-03-17 18:48:16.058 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.058 -07 000000478 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.1 V.
17-03-17 18:48:16.058 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30232 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30232 (-133.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30224 (-133.7 uncal um), Max = 30240 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:48:16.058 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30232, posNoise = 8, negNoise = 8
17-03-17 18:48:16.058 -07 000000478 INF: Z Motor: After move to -0.134530, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:16.058 -07 000000478 INF: Z Motor: Settle wait time = 1433 ms, measure time = 111 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:48:16.058 -07 000000478 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:48:16.098 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 18:48:16.098 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:48:16.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:16.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:16.098 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:16.098 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:16.098 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:48:16.098 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:16.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:16.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:48:16.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:48:16.108 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:48:16.118 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:48:16.118 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:48:16.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:48:16.168 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:48:16.318 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.990831,
17-03-17 18:48:16.368 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:48:16.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:48:16.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:48:16.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 18:48:16.408 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:48:16.408 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:48:16.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 18:48:16.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:48:16.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:16.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:48:16.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:48:16.508 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:16.508 -07 000000618 INF: Autofocus start
17-03-17 18:48:16.508 -07 000000618 INF: MeasureProfile start
17-03-17 18:48:16.508 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:16.518 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:16.518 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:48:16.518 -07 000000618 INF: MeasureProfile done
17-03-17 18:48:16.518 -07 000000618 INF: X=8  Z correction [um]=0.01453479
17-03-17 18:48:16.518 -07 000000618 INF: Autofocus finished
17-03-17 18:48:16.628 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:48:16.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:48:16.718 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:48:16.718 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:48:16.718 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134540133480852. ----------
17-03-17 18:48:16.728 -07 000000610 INF: Cycle	17	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:48:16.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27904, sync = True, waitForSettling = True)
17-03-17 18:48:16.728 -07 000000610 INF: Z Motor: Moving to -0.127736 mm, started at -0.134540 mm, distance = 6.80 um
17-03-17 18:48:16.728 -07 000000610 INF: FPGA: Xmit ZDACW 27904\n [Z Motor]
17-03-17 18:48:16.728 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:48:16.738 -07 000000610 INF: FPGA: 'ZDACW 27904' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:48:16.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:16.738 -07 000000618 INF: FPGA: Recv ZDACR 27904
17-03-17 18:48:16.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:48:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.898 -07 000000415 INF: FPGA: Recv ZSGSRD 29174
17-03-17 18:48:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.908 -07 000000478 INF: FPGA: Recv ZSGSRD 29174
17-03-17 18:48:16.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.918 -07 000000476 INF: FPGA: Recv ZSGSRD 29168
17-03-17 18:48:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.928 -07 000000415 INF: FPGA: Recv ZSGSRD 29173
17-03-17 18:48:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29177
17-03-17 18:48:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.948 -07 000000569 INF: FPGA: Recv ZSGSRD 29177
17-03-17 18:48:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.958 -07 000000618 INF: FPGA: Recv ZSGSRD 29174
17-03-17 18:48:16.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.968 -07 000000462 INF: FPGA: Recv ZSGSRD 29176
17-03-17 18:48:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.978 -07 000000593 INF: FPGA: Recv ZSGSRD 29172
17-03-17 18:48:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:16.988 -07 000000569 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:48:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:16.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:16.998 -07 000000501 INF: FPGA: Recv ZPIEZORD 24757
17-03-17 18:48:17.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:17.008 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.7 V.
17-03-17 18:48:17.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29174 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29174 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29168 (-126.9 uncal um), Max = 29177 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:48:17.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29174, posNoise = 3, negNoise = 6
17-03-17 18:48:17.008 -07 000000610 INF: Z Motor: After move to -0.127736, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:17.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:48:17.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:17.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:17.008 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:17.008 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:17.008 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:48:17.008 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:17.008 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:48:17.008 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:48:17.008 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:48:17.008 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:48:17.008 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:48:17.008 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:48:17.018 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:48:17.018 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:48:17.018 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:48:17.018 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:48:17.028 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:48:17.028 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:48:17.028 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:48:17.028 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:48:17.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28080 150\n [Camera]
17-03-17 18:48:17.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:48:17.628 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:48:17.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:48:17.628 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:17.628 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:48:17.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:48:17.628 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:17.628 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:17.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:48:17.638 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:17.638 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) start.
17-03-17 18:48:17.818 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28080 780
17-03-17 18:48:17.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:48:18.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:48:18.008 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:48:18.008 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:18.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:48:18.008 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:48:18.008 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:18.008 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:48:18.008 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:48:18.008 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:48:18.018 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:48:18.158 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:48:18.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:48:18.158 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:18.158 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:18.158 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:48:18.158 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:48:18.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:48:18.168 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:18.168 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:18.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:48:18.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:48:18.348 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:48:18.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28080 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-17 18:48:18.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:48:18.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127743317034869. ------
17-03-17 18:48:18.358 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:18.358 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13405 mm
17-03-17 18:48:18.358 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:48:18.358 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:48:18.358 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:48:18.358 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29284, sync = True, waitForSettling = False)
17-03-17 18:48:18.358 -07 000000462 INF: Z Motor: Moving to -0.134054 mm, started at -0.127743 mm, distance = -6.31 um
17-03-17 18:48:18.358 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:18.368 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:48:18.368 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:18.368 -07 000000012 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:48:18.378 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:48:18.378 -07 000000462 INF: FPGA: Xmit ZDACW 29284\n [Z Motor]
17-03-17 18:48:18.378 -07 000000626 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:18.378 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:48:18.378 -07 000000626 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:48:18.378 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:48:18.388 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:48:18.388 -07 000000462 INF: FPGA: 'ZDACW 29284' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:48:18.398 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:48:18.408 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:18.408 -07 000000012 INF: FPGA: Recv ZDACR 29284
17-03-17 18:48:18.418 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:48:18.418 -07 000000462 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:48:18.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:48:18.558 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:48:18.558 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:18.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:48:18.558 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:48:18.558 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:18.558 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:18.568 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:48:18.568 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:48:18.568 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:48:18.588 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:48:18.588 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:48:18.768 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:48:18.768 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:48:18.798 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:18.798 -07 000000012 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:48:18.808 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:18.808 -07 000000626 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:18.808 -07 000000626 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:48:18.808 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:48:19.758 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:19.758 -07 000000478 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:48:19.768 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:19.768 -07 000000626 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:19.778 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:48:19.778 -07 000000626 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:48:19.778 -07 000000626 INF: Y Motor: Moved to 74.8330 after 1417 ms (table move)
17-03-17 18:48:19.778 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134054 mm (DAC = 29284)
17-03-17 18:48:19.778 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30158
17-03-17 18:48:19.788 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:48:19.788 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.788 -07 000000462 INF: FPGA: Recv ZSGSRD 30172
17-03-17 18:48:19.798 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.798 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30152
17-03-17 18:48:19.808 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.808 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.808 -07 000000476 INF: FPGA: Recv ZSGSRD 30149
17-03-17 18:48:19.818 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.818 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.818 -07 000000476 INF: FPGA: Recv ZSGSRD 30153
17-03-17 18:48:19.828 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.828 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.828 -07 000000462 INF: FPGA: Recv ZSGSRD 30148
17-03-17 18:48:19.838 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.838 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.838 -07 000000626 INF: FPGA: Recv ZSGSRD 30158
17-03-17 18:48:19.848 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.848 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.848 -07 000000462 INF: FPGA: Recv ZSGSRD 30158
17-03-17 18:48:19.858 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.858 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30156
17-03-17 18:48:19.868 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.868 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:19.868 -07 000000476 INF: FPGA: Recv ZSGSRD 30157
17-03-17 18:48:19.878 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.878 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:19.878 -07 000000012 INF: FPGA: Recv ZPIEZORD 26071
17-03-17 18:48:19.888 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:19.888 -07 000000486 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -9.0 V.
17-03-17 18:48:19.888 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30156 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30156 (-133.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 30148 (-133.2 uncal um), Max = 30172 (-133.4 uncal um), Pos Noise = 16 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:48:19.888 -07 000000486 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30156, posNoise = 16, negNoise = 8
17-03-17 18:48:19.888 -07 000000486 INF: Z Motor: After move to -0.134054, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:19.888 -07 000000486 INF: Z Motor: Settle wait time = 1420 ms, measure time = 103 ms (allowed 150 ms), total time = 1523 ms
17-03-17 18:48:19.888 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:48:19.938 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:48:19.938 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:48:19.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:19.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:19.938 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:19.938 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:19.938 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:48:19.938 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:19.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:19.948 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:48:19.948 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:48:19.948 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:48:19.958 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:48:19.958 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:48:19.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:48:20.008 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:48:20.208 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:48:20.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:48:20.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:48:20.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:48:20.248 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:48:20.248 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:48:20.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 18:48:20.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 18:48:20.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:20.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:48:20.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:48:20.348 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:48:20.348 -07 000000478 INF: Autofocus start
17-03-17 18:48:20.348 -07 000000478 INF: MeasureProfile start
17-03-17 18:48:20.348 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:48:20.358 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:20.358 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:48:20.358 -07 000000478 INF: MeasureProfile done
17-03-17 18:48:20.358 -07 000000478 INF: X=-2  Z correction [um]=-0.01313862
17-03-17 18:48:20.358 -07 000000478 INF: Autofocus finished
17-03-17 18:48:20.558 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:48:20.558 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:48:20.558 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134051893358078. ----------
17-03-17 18:48:20.568 -07 000000610 INF: Cycle	17	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:48:20.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27794, sync = True, waitForSettling = True)
17-03-17 18:48:20.568 -07 000000610 INF: Z Motor: Moving to -0.127233 mm, started at -0.134052 mm, distance = 6.82 um
17-03-17 18:48:20.568 -07 000000610 INF: FPGA: Xmit ZDACW 27794\n [Z Motor]
17-03-17 18:48:20.568 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:48:20.578 -07 000000610 INF: FPGA: 'ZDACW 27794' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:48:20.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:48:20.578 -07 000000462 INF: FPGA: Recv ZDACR 27794
17-03-17 18:48:20.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:48:20.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.738 -07 000000415 INF: FPGA: Recv ZSGSRD 29096
17-03-17 18:48:20.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.748 -07 000000462 INF: FPGA: Recv ZSGSRD 29094
17-03-17 18:48:20.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.758 -07 000000415 INF: FPGA: Recv ZSGSRD 29096
17-03-17 18:48:20.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.768 -07 000000462 INF: FPGA: Recv ZSGSRD 29093
17-03-17 18:48:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.778 -07 000000415 INF: FPGA: Recv ZSGSRD 29095
17-03-17 18:48:20.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.788 -07 000000462 INF: FPGA: Recv ZSGSRD 29096
17-03-17 18:48:20.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.798 -07 000000476 INF: FPGA: Recv ZSGSRD 29098
17-03-17 18:48:20.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.808 -07 000000012 INF: FPGA: Recv ZSGSRD 29100
17-03-17 18:48:20.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.818 -07 000000415 INF: FPGA: Recv ZSGSRD 29091
17-03-17 18:48:20.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:48:20.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29091
17-03-17 18:48:20.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:48:20.838 -07 000000478 INF: FPGA: Recv ZPIEZORD 24650
17-03-17 18:48:20.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:20.848 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.241 V. Piezo Error = -9.8 V.
17-03-17 18:48:20.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29095 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29096 (-126.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29091 (-126.4 uncal um), Max = 29100 (-126.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:48:20.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29095, posNoise = 5, negNoise = 4
17-03-17 18:48:20.848 -07 000000610 INF: Z Motor: After move to -0.127233, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:48:20.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:48:20.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:48:20.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:48:20.848 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:48:20.848 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:48:20.848 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:48:20.848 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:48:20.848 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:48:20.848 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:48:20.848 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:48:20.848 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:48:20.848 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:48:20.848 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:48:20.858 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:48:20.858 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:48:20.858 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:48:20.858 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:48:20.868 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:48:20.868 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:48:20.868 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:48:20.868 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:48:20.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 27970 150\n [Camera]
17-03-17 18:48:21.068 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:48:21.458 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:48:21.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:48:21.458 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:21.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:48:21.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:48:21.468 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:21.468 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:21.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:48:21.478 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:21.478 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:48:21.628 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:48:21.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 16. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:48:21.658 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27970 780
17-03-17 18:48:21.678 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.989471,
17-03-17 18:48:21.808 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:48:21.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:48:21.838 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:48:21.838 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:21.848 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:48:21.848 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:48:21.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:48:21.848 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:48:21.848 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:21.858 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:21.858 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:48:21.998 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:48:21.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:48:21.998 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:48:21.998 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:48:21.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:48:21.998 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:48:21.998 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:48:21.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:48:22.008 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:48:22.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:48:22.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:48:22.188 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:48:22.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 27970 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:48:22.398 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:48:22.398 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:48:22.398 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:22.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:48:22.398 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:48:22.398 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:48:22.398 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:22.398 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:48:22.398 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:48:22.398 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:48:22.408 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:48:22.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 126 ms.
17-03-17 18:48:22.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:48:22.568 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:48:22.588 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 18:48:22.588 -07 000000610 INF: Imaging Cycle 17: ScanTilesCommand Cycle 17 time end. Duration was 165563 ms.
17-03-17 18:48:22.588 -07 000000610 INF: =================== Cycle #17 ===================
17-03-17 18:48:22.588 -07 000000610 INF: ===================  ===================
17-03-17 18:48:22.588 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:48:22.588 -07 000000012 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 18:48:22.598 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:48:22.598 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 18:48:22.598 -07 000000478 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 17, FrontChillerTemperature: 3.989471, FrontChillerHeatSinkTemperature: 0.335224, AmbientTemperature: 18.80685, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.57824, GreenLEDSensorTemperature: 26.17032, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 18:48:22.598 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.