17-03-17 18:48:22.658 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:48:22.658 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:48:22.658 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 18:48:22.658 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:22.658 -07 000000486 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:48:22.668 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:48:22.668 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:22.668 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:48:22.668 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:48:22.668 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:48:22.778 -07 000000476 INF: FPGA: Recv YMVTO 154378 877
17-03-17 18:48:22.778 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 118 ms overall
17-03-17 18:48:22.778 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 18:48:22.778 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 877 steps (0.548 mm). Slippage = 0.001 mm (0.00%).
17-03-17 18:48:22.788 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.548 mm, average velocity = 4.640 mm/sec
17-03-17 18:48:25.788 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:48:25.788 -07 000000486 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:48:25.798 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:48:25.798 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:48:25.808 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:48:25.808 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-17 18:48:25.808 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3151 ms
17-03-17 18:48:25.818 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 60° ===================
17-03-17 18:48:25.818 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:48:25.818 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:48:25.818 -07 000000415 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:48:25.828 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:48:25.828 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:48:25.828 -07 000000476 INF: FPGA: Recv TEC2EN 
17-03-17 18:48:25.838 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:48:25.838 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 60° ===================
17-03-17 18:48:25.838 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:48:25.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:48:25.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:48:25.868 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:48:25.868 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:48:25.868 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:48:26.168 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:48:26.188 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:48:26.188 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:48:26.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:48:26.258 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:48:26.258 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:48:26.358 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:48:26.358 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:48:26.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:26.388 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:48:26.388 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:48:26.388 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:48:26.518 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:48:26.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:26.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:48:26.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=174, R2=184, Total=358. Warn if over 250 bubbles per interval.
17-03-17 18:48:27.038 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.009895,
17-03-17 18:48:29.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:29.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:30.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:30.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:30.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:30.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:30.618 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:48:30.618 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:48:30.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:30.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:48:30.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:48:30.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:30.938 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:48:30.938 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:48:30.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:48:31.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:48:31.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:31.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:31.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:31.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:48:31.558 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:48:31.628 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 18:48:31.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=176, R2=187, Total=363. Warn if over 250 bubbles per interval.
17-03-17 18:48:32.398 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.009895,
17-03-17 18:48:32.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:48:32.778 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:48:32.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:48:32.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:48:32.798 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:48:32.798 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:48:32.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:48:32.948 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:48:32.948 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:48:32.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:48:33.018 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:48:33.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:48:33.118 -07 000000610 INF: =================== Cycle #18, Pumping Reagent CMS (4) ===================
17-03-17 18:48:33.118 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:48:33.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:33.148 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:48:33.148 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:48:33.148 -07 000000610 INF: =================== Cycle #18, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:48:33.278 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:48:33.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:34.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:34.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:35.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:35.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:35.238 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:48:35.238 -07 000000610 INF: =================== Cycle #18, Pumping Reagent CMS (4) ===================
17-03-17 18:48:35.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:35.398 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:48:35.398 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:48:35.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:35.558 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:48:35.558 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:48:35.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:48:35.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:48:35.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:36.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:36.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:36.178 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:48:36.178 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:48:36.628 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:48:36.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=176, R2=188, Total=364. Warn if over 250 bubbles per interval.
17-03-17 18:48:37.398 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:48:37.398 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:48:37.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:48:37.418 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:48:37.418 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:48:37.418 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:48:37.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:48:37.588 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:48:37.588 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:48:37.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:48:37.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:48:37.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:48:37.758 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:48:37.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:48:37.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:37.758 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.999021,
17-03-17 18:48:37.788 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:48:37.788 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:48:37.788 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:48:37.918 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:48:37.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:38.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:38.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:38.858 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:48:38.858 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:48:38.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:39.018 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:48:39.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:48:39.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:39.178 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:48:39.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:48:39.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:48:39.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:48:39.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:39.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:39.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:39.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:48:39.798 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:48:39.798 -07 000000476 INF: WaitCommand(10000) start
17-03-17 18:48:39.798 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:48:39.798 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:48:41.018 -07 000000424 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:48:41.018 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-17 18:48:41.048 -07 000000424 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:48:41.048 -07 000000424 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:48:41.178 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:48:41.218 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:41.628 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-17 18:48:41.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=179, R2=189, Total=368. Warn if over 250 bubbles per interval.
17-03-17 18:48:42.748 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:42.778 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:43.118 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.974486,
17-03-17 18:48:43.198 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:43.228 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:43.228 -07 000000424 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:48:43.228 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:48:43.228 -07 000000424 INF: ===================  ===================
17-03-17 18:48:46.628 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:48:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=179, R2=190, Total=369. Warn if over 250 bubbles per interval.
17-03-17 18:48:48.478 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.014009,
17-03-17 18:48:49.808 -07 000000476 INF: WaitCommand(10000) end
17-03-17 18:48:49.808 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:48:49.808 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:48:49.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:49.848 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:48:49.848 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:48:49.848 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:48:49.978 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:48:50.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:51.628 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:48:51.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=180, R2=190, Total=370. Warn if over 250 bubbles per interval.
17-03-17 18:48:53.838 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.012614,
17-03-17 18:48:56.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:56.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:56.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:56.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:56.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:48:56.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=180, R2=191, Total=371. Warn if over 250 bubbles per interval.
17-03-17 18:48:57.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:57.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:57.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:57.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:48:57.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:57.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:57.978 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:48:57.978 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:48:58.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:58.138 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:48:58.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:48:58.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:48:58.298 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:48:58.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:48:58.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:48:58.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:48:58.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:58.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:48:58.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:48:58.918 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:48:58.918 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:48:59.198 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.979922,
17-03-17 18:49:00.138 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:49:00.138 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:49:00.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:49:00.158 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:49:00.158 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:49:00.158 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:49:00.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:49:00.388 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:49:00.388 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:49:00.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:49:00.458 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:49:00.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:49:00.558 -07 000000610 INF: =================== Cycle #18, Pumping Reagent IMT (1) ===================
17-03-17 18:49:00.558 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:49:00.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:00.588 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:49:00.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:49:00.588 -07 000000610 INF: =================== Cycle #18, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:49:00.718 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:49:00.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:49:01.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:01.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=180, R2=191, Total=371. Warn if over 250 bubbles per interval.
17-03-17 18:49:02.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:02.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:49:02.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:02.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:02.678 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:49:02.678 -07 000000610 INF: =================== Cycle #18, Pumping Reagent IMT (1) ===================
17-03-17 18:49:02.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:02.838 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:49:02.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:49:02.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:02.998 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:49:02.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:49:02.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:49:03.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:49:03.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:03.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:03.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:03.618 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:49:03.618 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:49:04.558 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.99219,
17-03-17 18:49:04.838 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:49:04.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:49:04.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:49:04.858 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:49:04.858 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:49:04.858 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:49:05.088 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:49:05.108 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:49:05.108 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:49:05.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:49:05.178 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:49:05.178 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:49:05.278 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:49:05.278 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:49:05.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:05.308 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:49:05.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:49:05.308 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:49:05.438 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:49:05.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:49:06.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:06.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:06.378 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:49:06.378 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:49:06.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:06.538 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:49:06.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:49:06.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:06.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=180, R2=191, Total=371. Warn if over 250 bubbles per interval.
17-03-17 18:49:06.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:06.698 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:49:06.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:49:06.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:49:06.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:49:06.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:07.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:07.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:07.318 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:49:07.318 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:49:07.318 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 65° ===================
17-03-17 18:49:07.318 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:49:07.318 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:49:07.318 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:49:07.328 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:49:07.328 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:49:07.328 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 18:49:07.338 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:49:07.338 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 65° ===================
17-03-17 18:49:07.338 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:49:07.338 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:49:09.918 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.963579,
17-03-17 18:49:11.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:49:11.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=191, Total=372. Warn if over 250 bubbles per interval.
17-03-17 18:49:15.278 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.978563,
17-03-17 18:49:16.628 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:49:16.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:20.638 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.971733,
17-03-17 18:49:21.628 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:21.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:25.998 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.997626,
17-03-17 18:49:26.628 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:26.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:31.358 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.000345,
17-03-17 18:49:31.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:31.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:36.628 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:36.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:36.718 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.005817,
17-03-17 18:49:37.348 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:49:37.348 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:49:37.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:49:37.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:37.478 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:49:37.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:49:37.478 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:49:37.608 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:49:37.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:49:38.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:38.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:38.218 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:49:38.218 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:49:38.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:38.378 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:49:38.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:49:38.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:49:38.538 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:49:38.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:49:38.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:49:38.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:49:38.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:39.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:39.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:39.158 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:49:39.158 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:49:39.158 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:49:39.158 -07 000000438 INF: WaitCommand(30000) start
17-03-17 18:49:39.158 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:49:40.378 -07 000000486 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:49:40.378 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 18:49:40.408 -07 000000486 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:49:40.408 -07 000000486 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:49:40.538 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:49:40.578 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:49:41.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:41.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:42.078 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.019446,
17-03-17 18:49:42.918 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:42.948 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:49:43.368 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 18:49:43.398 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:49:43.398 -07 000000486 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:49:43.398 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:49:43.398 -07 000000486 INF: ===================  ===================
17-03-17 18:49:46.628 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:47.438 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.014009,
17-03-17 18:49:51.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:51.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:52.798 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.003063,
17-03-17 18:49:56.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:49:56.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:49:58.158 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.008536,
17-03-17 18:50:01.628 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:01.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:50:03.518 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.983999,
17-03-17 18:50:06.628 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:06.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=181, R2=192, Total=373. Warn if over 250 bubbles per interval.
17-03-17 18:50:08.878 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.997626,
17-03-17 18:50:09.168 -07 000000438 INF: WaitCommand(30000) end
17-03-17 18:50:09.168 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 22° ===================
17-03-17 18:50:09.168 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:50:09.168 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:50:09.168 -07 000000623 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:50:09.178 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:50:09.178 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:50:09.178 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 18:50:09.188 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:09.188 -07 000000610 INF: =================== Cycle #18, Flow Cell Temp 22° ===================
17-03-17 18:50:09.188 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:50:09.188 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:50:09.188 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:50:09.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:09.218 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:50:09.218 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:50:09.218 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:50:09.348 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:50:09.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:11.628 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 8
17-03-17 18:50:11.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=8, R2=6, Total=14. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=198, Total=387. Warn if over 250 bubbles per interval.
17-03-17 18:50:12.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:12.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:12.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:12.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:13.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:13.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:13.448 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:50:13.448 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:50:13.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:13.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:50:13.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:50:13.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:13.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:50:13.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:50:13.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:50:13.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:50:13.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:14.238 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.004458,
17-03-17 18:50:14.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:14.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:14.388 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:50:14.388 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:50:15.608 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:50:15.608 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:50:15.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:50:15.628 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:50:15.628 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:50:15.628 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:50:15.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:50:15.798 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:50:15.798 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:50:15.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:50:15.868 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:50:15.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:50:15.968 -07 000000610 INF: =================== Cycle #18, Pumping Reagent USM (2) ===================
17-03-17 18:50:15.968 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:50:15.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:15.998 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:50:15.998 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:50:15.998 -07 000000610 INF: =================== Cycle #18, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:50:16.128 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:50:16.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:16.628 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:50:16.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:17.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:17.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:18.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:18.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:18.088 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:50:18.088 -07 000000610 INF: =================== Cycle #18, Pumping Reagent USM (2) ===================
17-03-17 18:50:18.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:18.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:50:18.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:50:18.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:18.408 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:50:18.408 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:50:18.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:50:18.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:50:18.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:18.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:19.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:19.028 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:50:19.028 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:50:19.598 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.997626,
17-03-17 18:50:20.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:50:20.248 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:50:20.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:50:20.268 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:50:20.268 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:50:20.268 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:50:20.418 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:50:20.438 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:50:20.438 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:50:20.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:50:20.508 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:50:20.508 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:50:20.608 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:50:20.608 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:50:20.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:20.638 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:50:20.638 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:50:20.638 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:50:20.768 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:50:20.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:21.628 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:21.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:21.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:21.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:21.708 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:50:21.708 -07 000000610 INF: =================== Cycle #18, Pumping Reagent PR2 (3) ===================
17-03-17 18:50:21.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:21.868 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:50:21.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:50:21.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:50:22.028 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:50:22.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:50:22.028 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:50:22.158 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:50:22.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:22.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:22.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:22.648 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:50:22.648 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:50:22.648 -07 000000438 INF: WaitCommand(10000) start
17-03-17 18:50:22.648 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:50:22.648 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:50:23.868 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:50:23.868 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-17 18:50:23.898 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:50:23.898 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:50:24.028 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:50:24.068 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:24.958 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.011254,
17-03-17 18:50:25.598 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:25.628 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:50:26.048 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 18:50:26.078 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:50:26.078 -07 000000462 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:50:26.078 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:50:26.078 -07 000000462 INF: ===================  ===================
17-03-17 18:50:26.628 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:26.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:30.318 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.011254,
17-03-17 18:50:31.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:31.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:32.658 -07 000000438 INF: WaitCommand(10000) end
17-03-17 18:50:32.658 -07 000000610 INF: =================== Cycle #18, Imaging ===================
17-03-17 18:50:32.658 -07 000000610 INF: Imaging Cycle 18: ScanTilesCommand Cycle 18 time start.
17-03-17 18:50:32.658 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:50:32.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:50:32.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:50:32.688 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:50:32.688 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:50:32.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:50:33.008 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:50:33.008 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:50:33.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:50:33.078 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:50:33.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:33.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:33.078 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:50:33.078 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:33.078 -07 000000424 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:50:33.088 -07 000000415 INF: FPGA: Recv EXLED1ON 
17-03-17 18:50:33.088 -07 000000424 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:50:33.088 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:50:33.088 -07 000000382 INF: FPGA: Recv EXLED1ADCR 23122
17-03-17 18:50:33.098 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:33.098 -07 000000424 INF: RedLED: Using Red data: Photodiode ADC 23122 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-17 18:50:33.098 -07 000000424 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:50:33.098 -07 000000382 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:50:33.108 -07 000000424 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:33.108 -07 000000424 INF: RedLED: LED was on for 19 ms
17-03-17 18:50:33.108 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 18:50:33.108 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:50:33.108 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:33.108 -07 000000424 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:50:33.108 -07 000000382 INF: FPGA: Recv EXLED2ON 
17-03-17 18:50:33.118 -07 000000424 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:50:33.118 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:50:33.118 -07 000000608 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 18:50:33.128 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:33.128 -07 000000424 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 18:50:33.128 -07 000000424 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:50:33.128 -07 000000476 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:50:33.138 -07 000000424 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:33.138 -07 000000424 INF: GreenLED: LED was on for 19 ms
17-03-17 18:50:33.138 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 18:50:33.138 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:50:33.138 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 18:50:33.148 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:50:33.148 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:50:33.648 -07 000000424 INF: FPGA: Recv EMOUT
17-03-17 18:50:33.648 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 497 ms to get response, and 505 ms overall
17-03-17 18:50:33.648 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:50:33.658 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 18:50:33.658 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 18:50:33.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:50:33.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.12723580427567. ------
17-03-17 18:50:33.658 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:50:33.658 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17928 mm
17-03-17 18:50:33.658 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:50:33.658 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:50:33.658 -07 000000541 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 18:50:33.668 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:33.668 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:50:33.668 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:50:33.668 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 39164, sync = True, waitForSettling = False)
17-03-17 18:50:33.668 -07 000000623 INF: Z Motor: Moving to -0.179281 mm, started at -0.127236 mm, distance = -52.05 um
17-03-17 18:50:33.668 -07 000000415 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:50:33.678 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:33.678 -07 000000541 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:33.678 -07 000000541 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:50:33.678 -07 000000541 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:50:33.678 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:50:33.688 -07 000000623 INF: FPGA: Xmit ZDACW 39164\n [Z Motor]
17-03-17 18:50:33.688 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:50:33.698 -07 000000541 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:50:33.698 -07 000000623 INF: FPGA: 'ZDACW 39164' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:50:33.708 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:33.708 -07 000000486 INF: FPGA: Recv ZDACR 39164
17-03-17 18:50:33.718 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:33.718 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:50:33.878 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:50:33.878 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 18:50:35.378 -07 000000608 INF: FPGA: Recv YMVTO 122703 24781
17-03-17 18:50:35.378 -07 000000541 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 18:50:35.378 -07 000000541 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:50:35.378 -07 000000541 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24781 steps (15.488 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:50:35.378 -07 000000541 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.472 mm, average velocity = 9.069 mm/sec
17-03-17 18:50:35.678 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.033041,
17-03-17 18:50:36.628 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:36.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:38.228 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:38.228 -07 000000438 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:50:38.238 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:38.238 -07 000000541 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:38.258 -07 000000541 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:50:38.258 -07 000000541 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:50:38.258 -07 000000541 INF: Y Motor: Moved to 59.9116 after 4592 ms
17-03-17 18:50:38.258 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179281 mm (DAC = 39164)
17-03-17 18:50:38.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.258 -07 000000623 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:50:38.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:50:38.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.268 -07 000000623 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:50:38.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.278 -07 000000541 INF: FPGA: Recv ZSGSRD 37197
17-03-17 18:50:38.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.288 -07 000000462 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:50:38.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.298 -07 000000462 INF: FPGA: Recv ZSGSRD 37195
17-03-17 18:50:38.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.308 -07 000000462 INF: FPGA: Recv ZSGSRD 37200
17-03-17 18:50:38.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.318 -07 000000462 INF: FPGA: Recv ZSGSRD 37205
17-03-17 18:50:38.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.328 -07 000000541 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:50:38.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.338 -07 000000541 INF: FPGA: Recv ZSGSRD 37200
17-03-17 18:50:38.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:38.348 -07 000000462 INF: FPGA: Recv ZSGSRD 37198
17-03-17 18:50:38.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.358 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:38.358 -07 000000541 INF: FPGA: Recv ZPIEZORD 33525
17-03-17 18:50:38.368 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:38.368 -07 000000476 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.976 V. Piezo Error = -8.1 V.
17-03-17 18:50:38.368 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37198 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37198 (-178.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37192 (-178.4 uncal um), Max = 37205 (-178.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:50:38.368 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37198, posNoise = 7, negNoise = 6
17-03-17 18:50:38.368 -07 000000476 INF: Z Motor: After move to -0.179281, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:38.368 -07 000000476 INF: Z Motor: Settle wait time = 4594 ms, measure time = 105 ms (allowed 150 ms), total time = 4699 ms
17-03-17 18:50:38.368 -07 000000476 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:50:38.418 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4752 ms
17-03-17 18:50:38.418 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:50:38.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:38.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:38.418 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:38.418 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:38.418 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:50:38.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:38.418 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:50:38.418 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:50:38.448 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:50:38.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:50:38.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:50:38.448 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:50:38.468 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:50:38.468 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 18:50:38.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:50:38.508 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:50:38.708 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:50:38.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:50:38.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:50:38.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:50:38.748 -07 000000438 INF: FPGA: Recv @CAMSNAP 282
17-03-17 18:50:38.748 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:50:38.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 18:50:38.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:50:38.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:38.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:50:38.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:50:38.858 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:50:38.858 -07 000000541 INF: Image SNR check: start
17-03-17 18:50:38.858 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:50:38.868 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:50:38.868 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:50:38.868 -07 000000541 INF: Image SNR check: pass  [peak (Max-Min)=70.88]
17-03-17 18:50:38.868 -07 000000541 INF: Autofocus start
17-03-17 18:50:38.868 -07 000000541 INF: MeasureProfile start
17-03-17 18:50:38.888 -07 000000541 INF: MeasureProfile done
17-03-17 18:50:38.888 -07 000000541 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:50:38.888 -07 000000541 INF: Autofocus finished
17-03-17 18:50:39.068 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:50:39.068 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:50:39.068 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179291195260359. ----------
17-03-17 18:50:39.068 -07 000000610 INF: Cycle	18	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:50:39.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37697, sync = True, waitForSettling = True)
17-03-17 18:50:39.078 -07 000000610 INF: Z Motor: Moving to -0.172566 mm, started at -0.179291 mm, distance = 6.73 um
17-03-17 18:50:39.078 -07 000000610 INF: FPGA: Xmit ZDACW 37697\n [Z Motor]
17-03-17 18:50:39.078 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:50:39.088 -07 000000610 INF: FPGA: 'ZDACW 37697' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:39.088 -07 000000415 INF: FPGA: Recv ZDACR 37697
17-03-17 18:50:39.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:50:39.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.248 -07 000000415 INF: FPGA: Recv ZSGSRD 36153
17-03-17 18:50:39.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.258 -07 000000415 INF: FPGA: Recv ZSGSRD 36154
17-03-17 18:50:39.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36161
17-03-17 18:50:39.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:50:39.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.278 -07 000000012 INF: FPGA: Recv ZSGSRD 36154
17-03-17 18:50:39.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.288 -07 000000012 INF: FPGA: Recv ZSGSRD 36151
17-03-17 18:50:39.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.298 -07 000000415 INF: FPGA: Recv ZSGSRD 36151
17-03-17 18:50:39.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.308 -07 000000415 INF: FPGA: Recv ZSGSRD 36152
17-03-17 18:50:39.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36155
17-03-17 18:50:39.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.328 -07 000000415 INF: FPGA: Recv ZSGSRD 36150
17-03-17 18:50:39.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:39.338 -07 000000415 INF: FPGA: Recv ZSGSRD 36155
17-03-17 18:50:39.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:39.348 -07 000000415 INF: FPGA: Recv ZPIEZORD 32163
17-03-17 18:50:39.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:39.358 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.8 V.
17-03-17 18:50:39.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36154 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36154 (-171.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36150 (-171.7 uncal um), Max = 36161 (-171.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:50:39.358 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36154, posNoise = 7, negNoise = 4
17-03-17 18:50:39.358 -07 000000610 INF: Z Motor: After move to -0.172566, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:39.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:50:39.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:39.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:39.358 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:39.358 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:50:39.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:50:39.358 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:39.358 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:50:39.358 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:39.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:50:39.358 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:50:39.358 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:39.358 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:50:39.358 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:50:39.358 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:50:39.378 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:50:39.378 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:50:39.378 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 18:50:39.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:50:39.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:50:39.388 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:50:39.398 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:50:39.398 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-17 18:50:39.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37873 150\n [Camera]
17-03-17 18:50:39.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:50:39.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:50:39.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:50:39.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:39.998 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:50:39.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:50:39.998 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:39.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:39.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:50:40.008 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:40.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:50:40.188 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37873 780
17-03-17 18:50:40.338 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:50:40.398 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:50:40.398 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:50:40.398 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:40.398 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:40.398 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:50:40.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:50:40.398 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:50:40.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:40.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:40.408 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:50:40.528 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:50:40.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:50:40.528 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:40.528 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:50:40.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:50:40.648 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:40.648 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:40.648 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:50:40.648 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:40.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:50:40.718 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:50:40.718 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:50:40.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37873 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-17 18:50:40.718 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172939
17-03-17 18:50:40.718 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17294 mm
17-03-17 18:50:40.718 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:50:40.728 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:50:40.728 -07 000000608 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:50:40.728 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:40.728 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37778, sync = True, waitForSettling = False)
17-03-17 18:50:40.728 -07 000000476 INF: Z Motor: Moving to -0.172937 mm, started at -0.172584 mm, distance = -0.35 um
17-03-17 18:50:40.728 -07 000000486 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:50:40.738 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:40.738 -07 000000608 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:40.738 -07 000000608 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:50:40.738 -07 000000608 INF: Y Motor: Moving 1330 steps2
17-03-17 18:50:40.738 -07 000000476 INF: FPGA: Xmit ZDACW 37778\n [Z Motor]
17-03-17 18:50:40.738 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:50:40.748 -07 000000476 INF: FPGA: 'ZDACW 37778' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:40.748 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:40.748 -07 000000623 INF: FPGA: Recv ZDACR 37778
17-03-17 18:50:40.758 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:50:40.758 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:40.758 -07 000000476 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 18:50:41.038 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.997626,
17-03-17 18:50:41.038 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:50:41.038 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:50:41.038 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:41.038 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:50:41.038 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:50:41.038 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:41.048 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:41.048 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:41.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 18:50:41.058 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 18:50:41.128 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:50:41.138 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 18:50:41.158 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:41.158 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:50:41.168 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:50:41.168 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:41.168 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:50:41.168 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.831 mm, average velocity = 2.083 mm/sec
17-03-17 18:50:41.628 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:41.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:42.118 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:42.118 -07 000000623 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:50:42.128 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.128 -07 000000608 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:42.148 -07 000000608 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:50:42.148 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:50:42.148 -07 000000608 INF: Y Motor: Moved to 60.7339 after 1420 ms (table move)
17-03-17 18:50:42.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172937 mm (DAC = 37778)
17-03-17 18:50:42.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36202
17-03-17 18:50:42.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:50:42.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36205
17-03-17 18:50:42.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.168 -07 000000486 INF: FPGA: Recv ZSGSRD 36214
17-03-17 18:50:42.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.178 -07 000000486 INF: FPGA: Recv ZSGSRD 36212
17-03-17 18:50:42.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.188 -07 000000382 INF: FPGA: Recv ZSGSRD 36220
17-03-17 18:50:42.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.218 -07 000000438 INF: FPGA: Recv ZSGSRD 36207
17-03-17 18:50:42.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:50:42.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.238 -07 000000382 INF: FPGA: Recv ZSGSRD 36207
17-03-17 18:50:42.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:42.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.248 -07 000000424 INF: FPGA: Recv ZSGSRD 36215
17-03-17 18:50:42.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.278 -07 000000476 INF: FPGA: Recv ZSGSRD 36210
17-03-17 18:50:42.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:50:42.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.288 -07 000000476 INF: FPGA: Recv ZSGSRD 36206
17-03-17 18:50:42.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:42.298 -07 000000476 INF: FPGA: Recv ZPIEZORD 32249
17-03-17 18:50:42.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.765 V. Piezo Error = -8.8 V.
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36210 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36208 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36202 (-172.0 uncal um), Max = 36220 (-172.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36210, posNoise = 10, negNoise = 8
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: After move to -0.172937, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 157 ms (allowed 150 ms), total time = 1580 ms
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-17 18:50:42.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 18:50:42.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:50:42.308 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.172944073664299. ----------
17-03-17 18:50:42.308 -07 000000610 INF: Cycle	18	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37602, sync = True, waitForSettling = True)
17-03-17 18:50:42.308 -07 000000610 INF: Z Motor: Moving to -0.172131 mm, started at -0.172944 mm, distance = 0.81 um
17-03-17 18:50:42.308 -07 000000610 INF: FPGA: Xmit ZDACW 37602\n [Z Motor]
17-03-17 18:50:42.308 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:50:42.318 -07 000000610 INF: FPGA: 'ZDACW 37602' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:50:42.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:42.318 -07 000000486 INF: FPGA: Recv ZDACR 37602
17-03-17 18:50:42.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:50:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.478 -07 000000486 INF: FPGA: Recv ZSGSRD 36087
17-03-17 18:50:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:42.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.488 -07 000000012 INF: FPGA: Recv ZSGSRD 36087
17-03-17 18:50:42.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.498 -07 000000476 INF: FPGA: Recv ZSGSRD 36085
17-03-17 18:50:42.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.508 -07 000000623 INF: FPGA: Recv ZSGSRD 36085
17-03-17 18:50:42.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.518 -07 000000486 INF: FPGA: Recv ZSGSRD 36085
17-03-17 18:50:42.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.528 -07 000000012 INF: FPGA: Recv ZSGSRD 36080
17-03-17 18:50:42.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.538 -07 000000476 INF: FPGA: Recv ZSGSRD 36088
17-03-17 18:50:42.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.548 -07 000000623 INF: FPGA: Recv ZSGSRD 36088
17-03-17 18:50:42.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.558 -07 000000486 INF: FPGA: Recv ZSGSRD 36083
17-03-17 18:50:42.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:42.568 -07 000000012 INF: FPGA: Recv ZSGSRD 36084
17-03-17 18:50:42.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:42.578 -07 000000476 INF: FPGA: Recv ZPIEZORD 32061
17-03-17 18:50:42.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:42.588 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.9 V.
17-03-17 18:50:42.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36085 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36085 (-171.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36080 (-171.2 uncal um), Max = 36088 (-171.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:50:42.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36085, posNoise = 3, negNoise = 5
17-03-17 18:50:42.588 -07 000000610 INF: Z Motor: After move to -0.172131, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:42.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:50:42.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:42.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:42.588 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:42.588 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:42.588 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:50:42.588 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:50:42.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:42.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:50:42.588 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:50:42.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:50:42.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:42.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:50:42.598 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:50:42.598 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:50:42.598 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:50:42.598 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:50:42.608 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:50:42.608 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:50:42.608 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:50:42.608 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:50:42.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37778 150\n [Camera]
17-03-17 18:50:42.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:50:43.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:50:43.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:50:43.208 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:43.208 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:43.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:50:43.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:50:43.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:50:43.208 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:43.208 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:43.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:50:43.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37778 780
17-03-17 18:50:43.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 18:50:43.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:50:43.608 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:50:43.608 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:43.608 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:43.608 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:50:43.618 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:50:43.618 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:50:43.618 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:43.618 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:43.628 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:50:43.738 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:50:43.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:50:43.748 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:43.748 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:43.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:50:43.748 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:50:43.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:50:43.748 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:43.748 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:43.748 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1057886256, 0x0, 418435064) start.
17-03-17 18:50:43.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:50:43.938 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:50:43.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37778 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-17 18:50:43.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:50:43.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.172141047146579. ------
17-03-17 18:50:43.938 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:50:43.938 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17869 mm
17-03-17 18:50:43.948 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:50:43.948 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:50:43.948 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 7 ms overall
17-03-17 18:50:43.948 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:50:43.948 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:50:43.948 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:50:43.948 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39035, sync = True, waitForSettling = False)
17-03-17 18:50:43.948 -07 000000502 INF: Z Motor: Moving to -0.178691 mm, started at -0.172141 mm, distance = -6.55 um
17-03-17 18:50:43.958 -07 000000502 INF: FPGA: Xmit ZDACW 39035\n [Z Motor]
17-03-17 18:50:43.958 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:50:43.968 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:43.968 -07 000000502 INF: FPGA: 'ZDACW 39035' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:50:43.968 -07 000000512 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:50:43.978 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:50:43.978 -07 000000608 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:43.978 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:50:43.978 -07 000000608 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:50:43.978 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:43.978 -07 000000476 INF: FPGA: Recv ZDACR 39035
17-03-17 18:50:43.988 -07 000000502 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:43.988 -07 000000502 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 18:50:43.988 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:50:44.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:50:44.148 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:50:44.148 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:44.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1057886256, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:50:44.148 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:50:44.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:44.148 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:44.148 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:50:44.148 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:44.158 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:50:44.158 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 205 ms overall
17-03-17 18:50:44.158 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:50:44.358 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:50:44.358 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:50:44.398 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:44.398 -07 000000623 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:50:44.408 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:50:44.408 -07 000000608 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:44.408 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:50:44.408 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.178 mm/sec
17-03-17 18:50:45.358 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:45.358 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:50:45.368 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:45.368 -07 000000608 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:45.388 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:50:45.388 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:50:45.388 -07 000000608 INF: Y Motor: Moved to 61.5645 after 1434 ms (table move)
17-03-17 18:50:45.388 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178691 mm (DAC = 39035)
17-03-17 18:50:45.388 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.388 -07 000000486 INF: FPGA: Recv ZSGSRD 37106
17-03-17 18:50:45.398 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:50:45.398 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.398 -07 000000462 INF: FPGA: Recv ZSGSRD 37096
17-03-17 18:50:45.408 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.408 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.408 -07 000000438 INF: FPGA: Recv ZSGSRD 37103
17-03-17 18:50:45.418 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.418 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.418 -07 000000623 INF: FPGA: Recv ZSGSRD 37110
17-03-17 18:50:45.428 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.428 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.428 -07 000000486 INF: FPGA: Recv ZSGSRD 37104
17-03-17 18:50:45.438 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.438 -07 000000512 INF: FPGA: Recv ZSGSRD 37112
17-03-17 18:50:45.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.448 -07 000000623 INF: FPGA: Recv ZSGSRD 37109
17-03-17 18:50:45.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.458 -07 000000012 INF: FPGA: Recv ZSGSRD 37102
17-03-17 18:50:45.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.468 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.468 -07 000000512 INF: FPGA: Recv ZSGSRD 37108
17-03-17 18:50:45.478 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.478 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:45.478 -07 000000608 INF: FPGA: Recv ZSGSRD 37100
17-03-17 18:50:45.488 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.488 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:45.488 -07 000000512 INF: FPGA: Recv ZPIEZORD 33436
17-03-17 18:50:45.498 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:45.498 -07 000000541 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.956 V. Piezo Error = -8.1 V.
17-03-17 18:50:45.498 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37105 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37105 (-177.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37096 (-177.7 uncal um), Max = 37112 (-177.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:50:45.498 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37105, posNoise = 7, negNoise = 9
17-03-17 18:50:45.498 -07 000000541 INF: Z Motor: After move to -0.178691, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:45.498 -07 000000541 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:50:45.498 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:50:45.548 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:50:45.548 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:50:45.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:45.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:45.548 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:45.548 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:45.548 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:50:45.548 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:45.548 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:45.548 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:50:45.558 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:50:45.558 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:50:45.568 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:50:45.568 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:50:45.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:50:45.618 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:50:45.818 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:50:45.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:50:45.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:50:45.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606732216, 0x0, 559484976) start.
17-03-17 18:50:45.858 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:50:45.858 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:50:45.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:50:45.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606732216, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:50:45.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:45.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:50:45.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:50:45.958 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:50:45.958 -07 000000623 INF: Autofocus start
17-03-17 18:50:45.958 -07 000000623 INF: MeasureProfile start
17-03-17 18:50:45.958 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:50:45.968 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:50:45.968 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:50:45.968 -07 000000623 INF: MeasureProfile done
17-03-17 18:50:45.968 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:50:45.968 -07 000000623 INF: Autofocus finished
17-03-17 18:50:46.168 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:50:46.168 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:50:46.288 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178693743531175. ----------
17-03-17 18:50:46.288 -07 000000610 INF: Cycle	18	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:50:46.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37532, sync = True, waitForSettling = True)
17-03-17 18:50:46.288 -07 000000610 INF: Z Motor: Moving to -0.171810 mm, started at -0.178694 mm, distance = 6.88 um
17-03-17 18:50:46.288 -07 000000610 INF: FPGA: Xmit ZDACW 37532\n [Z Motor]
17-03-17 18:50:46.288 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:50:46.298 -07 000000610 INF: FPGA: 'ZDACW 37532' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:50:46.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:46.298 -07 000000476 INF: FPGA: Recv ZDACR 37532
17-03-17 18:50:46.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:50:46.398 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.005817,
17-03-17 18:50:46.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.458 -07 000000462 INF: FPGA: Recv ZSGSRD 36035
17-03-17 18:50:46.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:46.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.468 -07 000000486 INF: FPGA: Recv ZSGSRD 36036
17-03-17 18:50:46.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36038
17-03-17 18:50:46.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.488 -07 000000415 INF: FPGA: Recv ZSGSRD 36039
17-03-17 18:50:46.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.498 -07 000000424 INF: FPGA: Recv ZSGSRD 36030
17-03-17 18:50:46.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.508 -07 000000382 INF: FPGA: Recv ZSGSRD 36039
17-03-17 18:50:46.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.518 -07 000000608 INF: FPGA: Recv ZSGSRD 36033
17-03-17 18:50:46.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36034
17-03-17 18:50:46.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.538 -07 000000424 INF: FPGA: Recv ZSGSRD 36033
17-03-17 18:50:46.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:46.548 -07 000000382 INF: FPGA: Recv ZSGSRD 36032
17-03-17 18:50:46.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:46.558 -07 000000012 INF: FPGA: Recv ZPIEZORD 31960
17-03-17 18:50:46.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:46.568 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -9.0 V.
17-03-17 18:50:46.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36035 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36034 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36030 (-170.9 uncal um), Max = 36039 (-171.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:50:46.568 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36035, posNoise = 4, negNoise = 5
17-03-17 18:50:46.568 -07 000000610 INF: Z Motor: After move to -0.171810, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:46.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:50:46.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:46.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:46.568 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:46.568 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:46.568 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:50:46.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:46.568 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:50:46.568 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:50:46.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:46.568 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:50:46.568 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:50:46.568 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:50:46.578 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:50:46.578 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:50:46.578 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:50:46.578 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:50:46.588 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:50:46.588 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:50:46.588 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:50:46.588 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:50:46.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37709 150\n [Camera]
17-03-17 18:50:46.628 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:46.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:50:47.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:50:47.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:50:47.188 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:47.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:50:47.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:50:47.188 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:47.188 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:47.188 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:50:47.198 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:47.198 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:50:47.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37709 780
17-03-17 18:50:47.528 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:50:47.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:50:47.568 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:50:47.568 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:47.568 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:47.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:50:47.568 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:50:47.568 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:47.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:47.578 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:50:47.578 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:50:47.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:50:47.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:50:47.718 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:47.728 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:50:47.728 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:47.728 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 18:50:47.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:50:47.728 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:47.838 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:47.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:50:47.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:50:47.908 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:50:47.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37709 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:50:47.918 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172043
17-03-17 18:50:47.918 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17204 mm
17-03-17 18:50:47.918 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:50:47.918 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:50:47.918 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:50:47.918 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:47.918 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37583, sync = True, waitForSettling = False)
17-03-17 18:50:47.918 -07 000000541 INF: Z Motor: Moving to -0.172044 mm, started at -0.171820 mm, distance = -0.22 um
17-03-17 18:50:47.918 -07 000000012 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:50:47.928 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:50:47.928 -07 000000438 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:47.928 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:50:47.928 -07 000000438 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:50:47.928 -07 000000541 INF: FPGA: Xmit ZDACW 37583\n [Z Motor]
17-03-17 18:50:47.928 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:50:47.938 -07 000000541 INF: FPGA: 'ZDACW 37583' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:50:47.938 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:47.938 -07 000000608 INF: FPGA: Recv ZDACR 37583
17-03-17 18:50:47.948 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:50:47.948 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:47.948 -07 000000541 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 18:50:48.108 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:50:48.108 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:50:48.108 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:48.108 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:48.108 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:50:48.218 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:50:48.218 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:50:48.218 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:48.218 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:48.228 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 18:50:48.318 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:50:48.318 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:50:48.358 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:48.358 -07 000000541 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:50:48.368 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:48.368 -07 000000438 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:48.368 -07 000000438 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:50:48.368 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 18:50:49.318 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:49.318 -07 000000608 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:50:49.328 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:49.328 -07 000000438 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:49.338 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:50:49.338 -07 000000438 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:50:49.338 -07 000000438 INF: Y Motor: Moved to 62.3960 after 1425 ms (table move)
17-03-17 18:50:49.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172044 mm (DAC = 37583)
17-03-17 18:50:49.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.348 -07 000000415 INF: FPGA: Recv ZSGSRD 36074
17-03-17 18:50:49.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:50:49.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.358 -07 000000486 INF: FPGA: Recv ZSGSRD 36064
17-03-17 18:50:49.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.368 -07 000000476 INF: FPGA: Recv ZSGSRD 36071
17-03-17 18:50:49.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.378 -07 000000608 INF: FPGA: Recv ZSGSRD 36081
17-03-17 18:50:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.388 -07 000000512 INF: FPGA: Recv ZSGSRD 36073
17-03-17 18:50:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.398 -07 000000424 INF: FPGA: Recv ZSGSRD 36075
17-03-17 18:50:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.408 -07 000000476 INF: FPGA: Recv ZSGSRD 36069
17-03-17 18:50:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.418 -07 000000438 INF: FPGA: Recv ZSGSRD 36074
17-03-17 18:50:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.428 -07 000000608 INF: FPGA: Recv ZSGSRD 36069
17-03-17 18:50:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.438 -07 000000424 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:50:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:49.448 -07 000000623 INF: FPGA: Recv ZPIEZORD 32036
17-03-17 18:50:49.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.458 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.9 V.
17-03-17 18:50:49.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36071 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36072 (-171.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36063 (-171.1 uncal um), Max = 36081 (-171.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:50:49.458 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36071, posNoise = 10, negNoise = 8
17-03-17 18:50:49.458 -07 000000610 INF: Z Motor: After move to -0.172044, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:49.458 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:50:49.458 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:50:49.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 18:50:49.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:50:49.508 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.172051108176594. ----------
17-03-17 18:50:49.508 -07 000000610 INF: Cycle	18	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:50:49.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37406, sync = True, waitForSettling = True)
17-03-17 18:50:49.508 -07 000000610 INF: Z Motor: Moving to -0.171234 mm, started at -0.172051 mm, distance = 0.82 um
17-03-17 18:50:49.508 -07 000000610 INF: FPGA: Xmit ZDACW 37406\n [Z Motor]
17-03-17 18:50:49.508 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:50:49.518 -07 000000610 INF: FPGA: 'ZDACW 37406' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:50:49.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:49.518 -07 000000431 INF: FPGA: Recv ZDACR 37406
17-03-17 18:50:49.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:50:49.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.678 -07 000000608 INF: FPGA: Recv ZSGSRD 35944
17-03-17 18:50:49.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:49.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35952
17-03-17 18:50:49.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.698 -07 000000476 INF: FPGA: Recv ZSGSRD 35954
17-03-17 18:50:49.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35945
17-03-17 18:50:49.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.718 -07 000000608 INF: FPGA: Recv ZSGSRD 35945
17-03-17 18:50:49.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35941
17-03-17 18:50:49.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.738 -07 000000424 INF: FPGA: Recv ZSGSRD 35948
17-03-17 18:50:49.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.748 -07 000000431 INF: FPGA: Recv ZSGSRD 35941
17-03-17 18:50:49.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35946
17-03-17 18:50:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:49.768 -07 000000486 INF: FPGA: Recv ZSGSRD 35947
17-03-17 18:50:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:49.778 -07 000000424 INF: FPGA: Recv ZPIEZORD 31839
17-03-17 18:50:49.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:49.788 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -9.1 V.
17-03-17 18:50:49.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35946 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35946 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35941 (-170.3 uncal um), Max = 35954 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:50:49.788 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35946, posNoise = 8, negNoise = 5
17-03-17 18:50:49.788 -07 000000610 INF: Z Motor: After move to -0.171234, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:49.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:50:49.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:49.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:49.788 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:49.788 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:49.788 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:50:49.788 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:50:49.788 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:50:49.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:49.788 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:50:49.788 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:50:49.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:49.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:50:49.798 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:50:49.798 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:50:49.798 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:50:49.798 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:50:49.808 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:50:49.808 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:50:49.808 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:50:49.808 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:50:49.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37583 150\n [Camera]
17-03-17 18:50:50.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:50:50.408 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:50:50.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:50:50.408 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:50.408 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:50.408 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:50:50.408 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:50:50.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:50:50.408 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:50.408 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:50.408 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1057886256, 0x0, 418435064) start.
17-03-17 18:50:50.598 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37583 780
17-03-17 18:50:50.748 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:50:50.788 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:50:50.788 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:50:50.788 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:50.788 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1057886256, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:50:50.788 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:50:50.788 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:50.788 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:50.788 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:50:50.788 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:50.798 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:50:50.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:50:50.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:50:50.938 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:50.938 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:50.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1093308520, 0x0, 391868352) start.
17-03-17 18:50:50.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:50:50.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:50:50.938 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:50.938 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:50.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1128730784, 0x0, 418435064) start.
17-03-17 18:50:51.128 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:50:51.128 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:50:51.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37583 150' command took 2 ms to send, 1307 ms to get response, and 1319 ms overall
17-03-17 18:50:51.128 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171881
17-03-17 18:50:51.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17188 mm
17-03-17 18:50:51.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:50:51.138 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37547, sync = True, waitForSettling = False)
17-03-17 18:50:51.138 -07 000000608 INF: Z Motor: Moving to -0.171879 mm, started at -0.171248 mm, distance = -0.63 um
17-03-17 18:50:51.138 -07 000000608 INF: FPGA: Xmit ZDACW 37547\n [Z Motor]
17-03-17 18:50:51.138 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:50:51.138 -07 000000424 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:50:51.138 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:50:51.148 -07 000000608 INF: FPGA: 'ZDACW 37547' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:50:51.148 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:51.148 -07 000000415 INF: FPGA: Recv ZDACR 37547
17-03-17 18:50:51.158 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:51.158 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:51.158 -07 000000608 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 18:50:51.158 -07 000000476 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:50:51.168 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:50:51.168 -07 000000424 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:51.168 -07 000000424 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:50:51.168 -07 000000424 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:50:51.168 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:50:51.328 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1093308520, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:50:51.328 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:50:51.328 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:51.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1128730784, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:50:51.328 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:50:51.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:51.338 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:50:51.338 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:50:51.338 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:50:51.338 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:50:51.538 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:50:51.538 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 18:50:51.578 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:51.578 -07 000000438 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:50:51.588 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:50:51.588 -07 000000424 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:51.588 -07 000000424 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:50:51.588 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.213 mm/sec
17-03-17 18:50:51.628 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:51.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:51.758 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.030322,
17-03-17 18:50:52.538 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:52.538 -07 000000512 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:50:52.548 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.548 -07 000000424 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:52.568 -07 000000424 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:50:52.568 -07 000000424 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:50:52.568 -07 000000424 INF: Y Motor: Moved to 63.2251 after 1428 ms (table move)
17-03-17 18:50:52.568 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171879 mm (DAC = 37547)
17-03-17 18:50:52.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.568 -07 000000623 INF: FPGA: Recv ZSGSRD 36044
17-03-17 18:50:52.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:50:52.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.578 -07 000000382 INF: FPGA: Recv ZSGSRD 36041
17-03-17 18:50:52.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.588 -07 000000502 INF: FPGA: Recv ZSGSRD 36041
17-03-17 18:50:52.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.598 -07 000000424 INF: FPGA: Recv ZSGSRD 36047
17-03-17 18:50:52.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.608 -07 000000512 INF: FPGA: Recv ZSGSRD 36050
17-03-17 18:50:52.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.618 -07 000000476 INF: FPGA: Recv ZSGSRD 36053
17-03-17 18:50:52.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.628 -07 000000541 INF: FPGA: Recv ZSGSRD 36044
17-03-17 18:50:52.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.648 -07 000000438 INF: FPGA: Recv ZSGSRD 36047
17-03-17 18:50:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.658 -07 000000512 INF: FPGA: Recv ZSGSRD 36044
17-03-17 18:50:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.668 -07 000000623 INF: FPGA: Recv ZSGSRD 36047
17-03-17 18:50:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:52.678 -07 000000476 INF: FPGA: Recv ZPIEZORD 32029
17-03-17 18:50:52.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.688 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -8.9 V.
17-03-17 18:50:52.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36046 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36046 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36041 (-171.0 uncal um), Max = 36053 (-171.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:50:52.688 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36046, posNoise = 7, negNoise = 5
17-03-17 18:50:52.688 -07 000000610 INF: Z Motor: After move to -0.171879, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:52.688 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 117 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:50:52.688 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 18:50:52.728 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:50:52.728 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:50:52.728 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.17189050287305. ----------
17-03-17 18:50:52.728 -07 000000610 INF: Cycle	18	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:50:52.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37371, sync = True, waitForSettling = True)
17-03-17 18:50:52.728 -07 000000610 INF: Z Motor: Moving to -0.171073 mm, started at -0.171891 mm, distance = 0.82 um
17-03-17 18:50:52.728 -07 000000610 INF: FPGA: Xmit ZDACW 37371\n [Z Motor]
17-03-17 18:50:52.728 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:50:52.738 -07 000000610 INF: FPGA: 'ZDACW 37371' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:50:52.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:52.738 -07 000000382 INF: FPGA: Recv ZDACR 37371
17-03-17 18:50:52.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:50:52.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.898 -07 000000541 INF: FPGA: Recv ZSGSRD 35917
17-03-17 18:50:52.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:52.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.908 -07 000000462 INF: FPGA: Recv ZSGSRD 35922
17-03-17 18:50:52.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.918 -07 000000608 INF: FPGA: Recv ZSGSRD 35926
17-03-17 18:50:52.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.928 -07 000000431 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:50:52.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.938 -07 000000486 INF: FPGA: Recv ZSGSRD 35923
17-03-17 18:50:52.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.958 -07 000000476 INF: FPGA: Recv ZSGSRD 35921
17-03-17 18:50:52.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:52.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35919
17-03-17 18:50:52.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:52.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35923
17-03-17 18:50:52.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:52.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:52.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35917
17-03-17 18:50:53.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:53.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:53.018 -07 000000424 INF: FPGA: Recv ZSGSRD 35923
17-03-17 18:50:53.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:50:53.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:53.028 -07 000000623 INF: FPGA: Recv ZPIEZORD 31820
17-03-17 18:50:53.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:53.038 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.0 V.
17-03-17 18:50:53.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35920 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35914 (-170.2 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:50:53.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35920, posNoise = 6, negNoise = 6
17-03-17 18:50:53.038 -07 000000610 INF: Z Motor: After move to -0.171073, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:53.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 305 ms)
17-03-17 18:50:53.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:53.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:53.038 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:53.038 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:53.038 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:50:53.038 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:50:53.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:53.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:50:53.048 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:50:53.048 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:50:53.048 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:53.048 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:50:53.048 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:50:53.048 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:50:53.048 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:50:53.048 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:50:53.058 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:50:53.058 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:50:53.068 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:50:53.068 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:50:53.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37547 150\n [Camera]
17-03-17 18:50:53.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:50:53.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-17 18:50:53.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-17 18:50:53.668 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:53.668 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:53.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:50:53.668 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-17 18:50:53.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-17 18:50:53.668 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:53.668 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:53.668 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:50:53.858 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37547 780
17-03-17 18:50:53.998 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:50:54.058 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:50:54.058 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:50:54.058 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:54.058 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:50:54.058 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:50:54.058 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:54.068 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:54.068 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:50:54.068 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:50:54.068 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:50:54.188 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:50:54.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:50:54.198 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:54.198 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:54.198 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:50:54.198 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:50:54.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:50:54.198 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:54.198 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:54.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:50:54.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:50:54.388 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:50:54.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37547 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-17 18:50:54.388 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171491
17-03-17 18:50:54.388 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17149 mm
17-03-17 18:50:54.388 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:50:54.388 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:50:54.388 -07 000000438 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:50:54.388 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:54.388 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37462, sync = True, waitForSettling = False)
17-03-17 18:50:54.388 -07 000000502 INF: Z Motor: Moving to -0.171490 mm, started at -0.171081 mm, distance = -0.41 um
17-03-17 18:50:54.388 -07 000000431 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:50:54.398 -07 000000502 INF: FPGA: Xmit ZDACW 37462\n [Z Motor]
17-03-17 18:50:54.398 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:50:54.398 -07 000000438 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:54.398 -07 000000438 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:50:54.398 -07 000000438 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:50:54.398 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:50:54.408 -07 000000502 INF: FPGA: 'ZDACW 37462' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:50:54.408 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:54.408 -07 000000512 INF: FPGA: Recv ZDACR 37462
17-03-17 18:50:54.418 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:50:54.418 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:54.418 -07 000000502 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 18:50:54.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:50:54.578 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:50:54.578 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:54.578 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:50:54.578 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:50:54.578 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:54.578 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:54.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:50:54.578 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:54.588 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:50:54.788 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:50:54.788 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:50:54.828 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:54.828 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:50:54.838 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:50:54.838 -07 000000438 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:54.838 -07 000000438 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:50:54.838 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 18:50:55.788 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:55.788 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:50:55.798 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:55.798 -07 000000438 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:55.808 -07 000000438 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:50:55.808 -07 000000438 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:50:55.808 -07 000000438 INF: Y Motor: Moved to 64.0576 after 1420 ms (table move)
17-03-17 18:50:55.818 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171490 mm (DAC = 37462)
17-03-17 18:50:55.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35986
17-03-17 18:50:55.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.828 -07 000000623 INF: FPGA: Recv ZSGSRD 35981
17-03-17 18:50:55.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.838 -07 000000486 INF: FPGA: Recv ZSGSRD 35980
17-03-17 18:50:55.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.848 -07 000000438 INF: FPGA: Recv ZSGSRD 35992
17-03-17 18:50:55.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.858 -07 000000502 INF: FPGA: Recv ZSGSRD 35982
17-03-17 18:50:55.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.868 -07 000000623 INF: FPGA: Recv ZSGSRD 35990
17-03-17 18:50:55.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.878 -07 000000424 INF: FPGA: Recv ZSGSRD 35991
17-03-17 18:50:55.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.888 -07 000000438 INF: FPGA: Recv ZSGSRD 35983
17-03-17 18:50:55.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.898 -07 000000502 INF: FPGA: Recv ZSGSRD 35981
17-03-17 18:50:55.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:55.908 -07 000000623 INF: FPGA: Recv ZSGSRD 35979
17-03-17 18:50:55.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:55.918 -07 000000462 INF: FPGA: Recv ZPIEZORD 31928
17-03-17 18:50:55.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.928 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -9.0 V.
17-03-17 18:50:55.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35984 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35982 (-170.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35979 (-170.6 uncal um), Max = 35992 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:50:55.928 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35984, posNoise = 8, negNoise = 5
17-03-17 18:50:55.928 -07 000000610 INF: Z Motor: After move to -0.171490, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:55.928 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 110 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:50:55.928 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:50:55.968 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:50:55.968 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:50:55.968 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.171492201720261. ----------
17-03-17 18:50:55.968 -07 000000610 INF: Cycle	18	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:50:55.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37285, sync = True, waitForSettling = True)
17-03-17 18:50:55.968 -07 000000610 INF: Z Motor: Moving to -0.170680 mm, started at -0.171492 mm, distance = 0.81 um
17-03-17 18:50:55.968 -07 000000610 INF: FPGA: Xmit ZDACW 37285\n [Z Motor]
17-03-17 18:50:55.968 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:50:55.978 -07 000000610 INF: FPGA: 'ZDACW 37285' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:50:55.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:55.978 -07 000000512 INF: FPGA: Recv ZDACR 37285
17-03-17 18:50:55.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:55.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:50:56.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35856
17-03-17 18:50:56.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:56.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.148 -07 000000431 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:50:56.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:50:56.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35862
17-03-17 18:50:56.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:50:56.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.188 -07 000000382 INF: FPGA: Recv ZSGSRD 35856
17-03-17 18:50:56.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.198 -07 000000502 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:50:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.208 -07 000000012 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:50:56.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35859
17-03-17 18:50:56.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:56.228 -07 000000382 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:50:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:56.238 -07 000000486 INF: FPGA: Recv ZPIEZORD 31759
17-03-17 18:50:56.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:56.248 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.689 V. Piezo Error = -9.0 V.
17-03-17 18:50:56.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35859 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35858 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35856 (-169.8 uncal um), Max = 35863 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:50:56.248 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35859, posNoise = 4, negNoise = 3
17-03-17 18:50:56.248 -07 000000610 INF: Z Motor: After move to -0.170680, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:56.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:50:56.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:56.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:56.248 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:56.248 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:56.248 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:50:56.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:56.248 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:50:56.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:50:56.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:56.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:50:56.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:50:56.248 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:50:56.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:50:56.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:50:56.258 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:50:56.258 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:50:56.268 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:50:56.268 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:50:56.268 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:50:56.268 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:50:56.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37462 150\n [Camera]
17-03-17 18:50:56.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:50:56.628 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:50:56.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:50:56.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:50:56.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:50:56.868 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:56.868 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:56.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:50:56.868 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:50:56.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:50:56.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:56.868 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:56.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:50:57.058 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37462 780
17-03-17 18:50:57.118 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.005817,
17-03-17 18:50:57.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:50:57.248 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:50:57.248 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:50:57.248 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:57.258 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:57.258 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:50:57.258 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:50:57.258 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:57.258 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:50:57.258 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:50:57.258 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:50:57.398 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:50:57.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:50:57.398 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:50:57.398 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:50:57.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:50:57.408 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:50:57.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:50:57.408 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:50:57.408 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:50:57.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:50:57.588 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:50:57.588 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:50:57.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37462 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:50:57.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:50:57.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170689175202541. ------
17-03-17 18:50:57.598 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:50:57.598 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17726 mm
17-03-17 18:50:57.598 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:50:57.598 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:50:57.598 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:50:57.598 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38721, sync = True, waitForSettling = False)
17-03-17 18:50:57.598 -07 000000424 INF: Z Motor: Moving to -0.177253 mm, started at -0.170689 mm, distance = -6.56 um
17-03-17 18:50:57.598 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:50:57.608 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:50:57.608 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:57.608 -07 000000502 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:50:57.618 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:50:57.618 -07 000000608 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:57.618 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:50:57.618 -07 000000608 INF: Y Motor: Moving 1336 steps-10
17-03-17 18:50:57.618 -07 000000424 INF: FPGA: Xmit ZDACW 38721\n [Z Motor]
17-03-17 18:50:57.618 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:50:57.628 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:50:57.628 -07 000000424 INF: FPGA: 'ZDACW 38721' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:50:57.638 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:50:57.648 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:57.648 -07 000000512 INF: FPGA: Recv ZDACR 38721
17-03-17 18:50:57.658 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:50:57.658 -07 000000424 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:50:57.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:50:57.788 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:50:57.788 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:57.788 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:50:57.788 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:50:57.788 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:57.788 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:57.788 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:50:57.788 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:50:57.798 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:50:57.828 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:50:57.828 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:50:58.008 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:50:58.008 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:50:58.038 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:58.048 -07 000000424 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:50:58.048 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:50:58.048 -07 000000608 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:58.048 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:50:58.048 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-17 18:50:58.998 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:50:58.998 -07 000000502 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:50:59.008 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:59.008 -07 000000608 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:50:59.028 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:50:59.028 -07 000000608 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:50:59.028 -07 000000608 INF: Y Motor: Moved to 64.8794 after 1423 ms (table move)
17-03-17 18:50:59.028 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177253 mm (DAC = 38721)
17-03-17 18:50:59.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.028 -07 000000476 INF: FPGA: Recv ZSGSRD 36880
17-03-17 18:50:59.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:50:59.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.038 -07 000000415 INF: FPGA: Recv ZSGSRD 36878
17-03-17 18:50:59.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36874
17-03-17 18:50:59.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.058 -07 000000623 INF: FPGA: Recv ZSGSRD 36878
17-03-17 18:50:59.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.068 -07 000000512 INF: FPGA: Recv ZSGSRD 36878
17-03-17 18:50:59.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.078 -07 000000486 INF: FPGA: Recv ZSGSRD 36890
17-03-17 18:50:59.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.088 -07 000000512 INF: FPGA: Recv ZSGSRD 36884
17-03-17 18:50:59.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.098 -07 000000486 INF: FPGA: Recv ZSGSRD 36883
17-03-17 18:50:59.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.108 -07 000000438 INF: FPGA: Recv ZSGSRD 36885
17-03-17 18:50:59.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.118 -07 000000512 INF: FPGA: Recv ZSGSRD 36879
17-03-17 18:50:59.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.128 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:50:59.128 -07 000000438 INF: FPGA: Recv ZPIEZORD 33148
17-03-17 18:50:59.138 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.138 -07 000000382 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.908 V. Piezo Error = -8.3 V.
17-03-17 18:50:59.138 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36881 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36880 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36874 (-176.3 uncal um), Max = 36890 (-176.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:50:59.138 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36881, posNoise = 9, negNoise = 7
17-03-17 18:50:59.138 -07 000000382 INF: Z Motor: After move to -0.177253, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:50:59.138 -07 000000382 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:50:59.138 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:50:59.188 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:50:59.188 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:50:59.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:50:59.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:50:59.188 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:50:59.188 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:50:59.188 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:50:59.188 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:50:59.188 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:50:59.188 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:50:59.198 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:50:59.198 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:50:59.208 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:50:59.208 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:50:59.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:50:59.258 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:50:59.458 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:50:59.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:50:59.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:50:59.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:50:59.498 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:50:59.498 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:50:59.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:50:59.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:50:59.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:50:59.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:50:59.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:50:59.598 -07 000000502 INF: Autofocus start
17-03-17 18:50:59.598 -07 000000502 INF: MeasureProfile start
17-03-17 18:50:59.598 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:50:59.598 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:50:59.608 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:50:59.608 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:50:59.608 -07 000000502 INF: MeasureProfile done
17-03-17 18:50:59.608 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:50:59.608 -07 000000502 INF: Autofocus finished
17-03-17 18:50:59.808 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:50:59.808 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:50:59.808 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.177254720011421. ----------
17-03-17 18:50:59.808 -07 000000610 INF: Cycle	18	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:50:59.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37236, sync = True, waitForSettling = True)
17-03-17 18:50:59.818 -07 000000610 INF: Z Motor: Moving to -0.170455 mm, started at -0.177255 mm, distance = 6.80 um
17-03-17 18:50:59.818 -07 000000610 INF: FPGA: Xmit ZDACW 37236\n [Z Motor]
17-03-17 18:50:59.818 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:50:59.828 -07 000000610 INF: FPGA: 'ZDACW 37236' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:50:59.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:50:59.828 -07 000000424 INF: FPGA: Recv ZDACR 37236
17-03-17 18:50:59.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:50:59.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:50:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.988 -07 000000512 INF: FPGA: Recv ZSGSRD 35826
17-03-17 18:50:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:50:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:50:59.998 -07 000000462 INF: FPGA: Recv ZSGSRD 35825
17-03-17 18:51:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.008 -07 000000541 INF: FPGA: Recv ZSGSRD 35827
17-03-17 18:51:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.018 -07 000000424 INF: FPGA: Recv ZSGSRD 35825
17-03-17 18:51:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.028 -07 000000486 INF: FPGA: Recv ZSGSRD 35826
17-03-17 18:51:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.038 -07 000000462 INF: FPGA: Recv ZSGSRD 35828
17-03-17 18:51:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.048 -07 000000012 INF: FPGA: Recv ZSGSRD 35823
17-03-17 18:51:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.058 -07 000000476 INF: FPGA: Recv ZSGSRD 35821
17-03-17 18:51:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.068 -07 000000486 INF: FPGA: Recv ZSGSRD 35822
17-03-17 18:51:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:00.078 -07 000000502 INF: FPGA: Recv ZSGSRD 35825
17-03-17 18:51:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:00.088 -07 000000012 INF: FPGA: Recv ZPIEZORD 31735
17-03-17 18:51:00.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:00.098 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.0 V.
17-03-17 18:51:00.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35825 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35825 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35821 (-169.6 uncal um), Max = 35828 (-169.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:51:00.098 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35825, posNoise = 3, negNoise = 4
17-03-17 18:51:00.098 -07 000000610 INF: Z Motor: After move to -0.170455, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:00.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:51:00.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:00.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:00.098 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:00.098 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:00.098 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:00.098 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:00.098 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:00.098 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:00.098 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:51:00.098 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:00.098 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:00.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:00.108 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:00.108 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:00.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:00.108 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:00.118 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:51:00.118 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:51:00.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:51:00.118 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:51:00.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37413 150\n [Camera]
17-03-17 18:51:00.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:00.718 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:00.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:00.718 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:00.718 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:00.718 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:51:00.718 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:00.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:00.718 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:00.718 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:00.718 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:51:00.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37413 780
17-03-17 18:51:01.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:01.108 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:51:01.108 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:51:01.108 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:01.108 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:51:01.108 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:51:01.108 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:01.108 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:01.108 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:51:01.108 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:01.118 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:51:01.248 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:01.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:01.248 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:01.248 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:01.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:01.248 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:01.248 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:51:01.248 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:01.248 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:01.248 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:51:01.438 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:01.438 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:01.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37413 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-17 18:51:01.438 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.171022
17-03-17 18:51:01.438 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17102 mm
17-03-17 18:51:01.438 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:01.438 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:51:01.438 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37360, sync = True, waitForSettling = False)
17-03-17 18:51:01.438 -07 000000415 INF: Z Motor: Moving to -0.171023 mm, started at -0.170471 mm, distance = -0.55 um
17-03-17 18:51:01.438 -07 000000415 INF: FPGA: Xmit ZDACW 37360\n [Z Motor]
17-03-17 18:51:01.448 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:51:01.448 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:01.448 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:51:01.448 -07 000000415 INF: FPGA: 'ZDACW 37360' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:51:01.448 -07 000000462 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:51:01.458 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:01.458 -07 000000012 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:01.458 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:01.458 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:01.458 -07 000000012 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:51:01.458 -07 000000462 INF: FPGA: Recv ZDACR 37360
17-03-17 18:51:01.468 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:01.468 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:51:01.468 -07 000000415 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:51:01.628 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:51:01.628 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:51:01.628 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:01.628 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:01.628 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:01.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:01.628 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:51:01.628 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:51:01.628 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:01.638 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:01.638 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:01.638 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:51:01.838 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:51:01.838 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:51:01.878 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:01.878 -07 000000476 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:51:01.888 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:01.888 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:01.888 -07 000000012 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:51:01.888 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.196 mm/sec
17-03-17 18:51:02.478 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.014009,
17-03-17 18:51:02.838 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:02.838 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:51:02.848 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:02.848 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:02.868 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:02.868 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:02.868 -07 000000012 INF: Y Motor: Moved to 65.7148 after 1421 ms (table move)
17-03-17 18:51:02.868 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171023 mm (DAC = 37360)
17-03-17 18:51:02.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.868 -07 000000431 INF: FPGA: Recv ZSGSRD 35916
17-03-17 18:51:02.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:02.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.878 -07 000000438 INF: FPGA: Recv ZSGSRD 35911
17-03-17 18:51:02.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.888 -07 000000608 INF: FPGA: Recv ZSGSRD 35904
17-03-17 18:51:02.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.898 -07 000000623 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:51:02.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.908 -07 000000502 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:51:02.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.918 -07 000000476 INF: FPGA: Recv ZSGSRD 35921
17-03-17 18:51:02.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.928 -07 000000431 INF: FPGA: Recv ZSGSRD 35915
17-03-17 18:51:02.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35906
17-03-17 18:51:02.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.948 -07 000000486 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:51:02.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:02.958 -07 000000462 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:51:02.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:02.968 -07 000000438 INF: FPGA: Recv ZPIEZORD 31892
17-03-17 18:51:02.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:02.978 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -8.9 V.
17-03-17 18:51:02.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35913 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35914 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35904 (-170.1 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:51:02.978 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35913, posNoise = 8, negNoise = 9
17-03-17 18:51:02.978 -07 000000610 INF: Z Motor: After move to -0.171023, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:02.978 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 108 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:51:02.978 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:03.028 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 18:51:03.028 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:03.028 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.171036082658196. ----------
17-03-17 18:51:03.028 -07 000000610 INF: Cycle	18	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:03.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37183, sync = True, waitForSettling = True)
17-03-17 18:51:03.028 -07 000000610 INF: Z Motor: Moving to -0.170213 mm, started at -0.171036 mm, distance = 0.82 um
17-03-17 18:51:03.028 -07 000000610 INF: FPGA: Xmit ZDACW 37183\n [Z Motor]
17-03-17 18:51:03.028 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:51:03.038 -07 000000610 INF: FPGA: 'ZDACW 37183' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:03.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:03.038 -07 000000462 INF: FPGA: Recv ZDACR 37183
17-03-17 18:51:03.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.198 -07 000000512 INF: FPGA: Recv ZSGSRD 35780
17-03-17 18:51:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.208 -07 000000415 INF: FPGA: Recv ZSGSRD 35793
17-03-17 18:51:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35785
17-03-17 18:51:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.228 -07 000000502 INF: FPGA: Recv ZSGSRD 35787
17-03-17 18:51:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.238 -07 000000608 INF: FPGA: Recv ZSGSRD 35794
17-03-17 18:51:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.248 -07 000000476 INF: FPGA: Recv ZSGSRD 35787
17-03-17 18:51:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.258 -07 000000382 INF: FPGA: Recv ZSGSRD 35786
17-03-17 18:51:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.268 -07 000000486 INF: FPGA: Recv ZSGSRD 35784
17-03-17 18:51:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.278 -07 000000012 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:51:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:03.288 -07 000000415 INF: FPGA: Recv ZSGSRD 35791
17-03-17 18:51:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:03.298 -07 000000486 INF: FPGA: Recv ZPIEZORD 31694
17-03-17 18:51:03.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:03.308 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -9.0 V.
17-03-17 18:51:03.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35787 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35786 (-169.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35780 (-169.3 uncal um), Max = 35794 (-169.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:51:03.308 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35787, posNoise = 7, negNoise = 7
17-03-17 18:51:03.308 -07 000000610 INF: Z Motor: After move to -0.170213, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:03.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:51:03.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:03.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:03.308 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:03.308 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:03.308 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:03.308 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:03.308 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:03.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:03.308 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:03.308 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:03.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:03.308 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:03.318 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:51:03.318 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:03.318 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:51:03.318 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:03.328 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:51:03.328 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:51:03.328 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:51:03.328 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:51:03.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37360 150\n [Camera]
17-03-17 18:51:03.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:03.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:03.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:03.928 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:03.928 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:03.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:51:03.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:03.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:03.928 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:03.928 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:03.928 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 18:51:04.118 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37360 780
17-03-17 18:51:04.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:04.308 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:51:04.308 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:51:04.308 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:04.308 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:51:04.308 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:51:04.308 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:04.318 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:04.318 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:51:04.318 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:04.328 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:51:04.458 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:51:04.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:51:04.458 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:04.458 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:04.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 18:51:04.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:51:04.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:51:04.468 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:04.468 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:04.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 18:51:04.648 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:51:04.648 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:04.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37360 150' command took 2 ms to send, 1317 ms to get response, and 1319 ms overall
17-03-17 18:51:04.648 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170488
17-03-17 18:51:04.658 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17049 mm
17-03-17 18:51:04.658 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:04.658 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:51:04.658 -07 000000431 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:51:04.658 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:04.658 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37243, sync = True, waitForSettling = False)
17-03-17 18:51:04.658 -07 000000476 INF: Z Motor: Moving to -0.170488 mm, started at -0.170227 mm, distance = -0.26 um
17-03-17 18:51:04.658 -07 000000608 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:51:04.668 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:04.668 -07 000000431 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:04.668 -07 000000431 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:04.668 -07 000000431 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:51:04.668 -07 000000476 INF: FPGA: Xmit ZDACW 37243\n [Z Motor]
17-03-17 18:51:04.668 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:51:04.678 -07 000000476 INF: FPGA: 'ZDACW 37243' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:51:04.678 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:04.688 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:04.688 -07 000000438 INF: FPGA: Recv ZDACR 37243
17-03-17 18:51:04.698 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:04.698 -07 000000476 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:51:04.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:51:04.848 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:51:04.848 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:04.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:51:04.848 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:51:04.848 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:04.848 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:04.858 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:04.858 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:51:04.858 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:51:05.048 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:51:05.048 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:51:05.088 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:05.088 -07 000000415 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:51:05.098 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:51:05.098 -07 000000431 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:05.098 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:51:05.098 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 18:51:06.048 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:06.048 -07 000000512 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:51:06.058 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:06.058 -07 000000431 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:06.078 -07 000000431 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:06.078 -07 000000431 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:51:06.078 -07 000000431 INF: Y Motor: Moved to 66.5400 after 1417 ms (table move)
17-03-17 18:51:06.078 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170488 mm (DAC = 37243)
17-03-17 18:51:06.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.078 -07 000000502 INF: FPGA: Recv ZSGSRD 35829
17-03-17 18:51:06.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:06.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.088 -07 000000462 INF: FPGA: Recv ZSGSRD 35826
17-03-17 18:51:06.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.098 -07 000000486 INF: FPGA: Recv ZSGSRD 35827
17-03-17 18:51:06.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.108 -07 000000512 INF: FPGA: Recv ZSGSRD 35827
17-03-17 18:51:06.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35836
17-03-17 18:51:06.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.128 -07 000000462 INF: FPGA: Recv ZSGSRD 35830
17-03-17 18:51:06.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.138 -07 000000012 INF: FPGA: Recv ZSGSRD 35834
17-03-17 18:51:06.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35829
17-03-17 18:51:06.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35833
17-03-17 18:51:06.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.168 -07 000000382 INF: FPGA: Recv ZSGSRD 35830
17-03-17 18:51:06.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:06.178 -07 000000012 INF: FPGA: Recv ZPIEZORD 31767
17-03-17 18:51:06.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.188 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.0 V.
17-03-17 18:51:06.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35830 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35830 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35826 (-169.6 uncal um), Max = 35836 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:51:06.188 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35830, posNoise = 6, negNoise = 4
17-03-17 18:51:06.188 -07 000000610 INF: Z Motor: After move to -0.170488, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:06.188 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 106 ms (allowed 150 ms), total time = 1526 ms
17-03-17 18:51:06.188 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:06.238 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 18:51:06.238 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:06.238 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.17050287305043. ----------
17-03-17 18:51:06.238 -07 000000610 INF: Cycle	18	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:06.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37066, sync = True, waitForSettling = True)
17-03-17 18:51:06.238 -07 000000610 INF: Z Motor: Moving to -0.169677 mm, started at -0.170503 mm, distance = 0.83 um
17-03-17 18:51:06.238 -07 000000610 INF: FPGA: Xmit ZDACW 37066\n [Z Motor]
17-03-17 18:51:06.238 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:51:06.248 -07 000000610 INF: FPGA: 'ZDACW 37066' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:06.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:06.248 -07 000000382 INF: FPGA: Recv ZDACR 37066
17-03-17 18:51:06.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:06.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.408 -07 000000012 INF: FPGA: Recv ZSGSRD 35701
17-03-17 18:51:06.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:06.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.418 -07 000000502 INF: FPGA: Recv ZSGSRD 35704
17-03-17 18:51:06.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.428 -07 000000512 INF: FPGA: Recv ZSGSRD 35706
17-03-17 18:51:06.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.438 -07 000000608 INF: FPGA: Recv ZSGSRD 35707
17-03-17 18:51:06.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.448 -07 000000502 INF: FPGA: Recv ZSGSRD 35703
17-03-17 18:51:06.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.458 -07 000000415 INF: FPGA: Recv ZSGSRD 35699
17-03-17 18:51:06.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35698
17-03-17 18:51:06.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.478 -07 000000431 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:51:06.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.488 -07 000000502 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:51:06.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:06.498 -07 000000415 INF: FPGA: Recv ZSGSRD 35704
17-03-17 18:51:06.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:06.508 -07 000000438 INF: FPGA: Recv ZPIEZORD 31588
17-03-17 18:51:06.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:06.518 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -9.1 V.
17-03-17 18:51:06.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35703 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35702 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35698 (-168.8 uncal um), Max = 35707 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:51:06.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35703, posNoise = 4, negNoise = 5
17-03-17 18:51:06.518 -07 000000610 INF: Z Motor: After move to -0.169677, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:06.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:51:06.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:06.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:06.518 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:06.518 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:06.518 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:06.518 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:06.518 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:06.518 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:06.518 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:06.518 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:06.518 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:06.518 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:06.528 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:06.528 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:06.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:06.528 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:06.538 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 18:51:06.538 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:51:06.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 18:51:06.538 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 18:51:06.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37243 150\n [Camera]
17-03-17 18:51:06.628 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:06.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:06.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:07.138 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:07.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:07.138 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:07.138 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:07.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 18:51:07.138 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:07.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:07.148 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:07.148 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:07.148 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 18:51:07.328 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37243 780
17-03-17 18:51:07.478 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:07.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:51:07.518 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:51:07.518 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:07.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:51:07.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:51:07.518 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:07.528 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:51:07.528 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:51:07.528 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:51:07.538 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:51:07.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:07.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:07.678 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:07.678 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:07.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 18:51:07.678 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:07.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:07.678 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:07.678 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:07.678 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 18:51:07.838 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.978563,
17-03-17 18:51:07.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 18:51:07.868 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:07.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37243 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-17 18:51:07.868 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170483
17-03-17 18:51:07.868 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17048 mm
17-03-17 18:51:07.868 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:07.878 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:51:07.878 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:51:07.878 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:07.878 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37242, sync = True, waitForSettling = False)
17-03-17 18:51:07.878 -07 000000502 INF: Z Motor: Moving to -0.170483 mm, started at -0.169687 mm, distance = -0.80 um
17-03-17 18:51:07.878 -07 000000431 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:51:07.888 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:07.888 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:07.888 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:07.888 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:51:07.888 -07 000000502 INF: FPGA: Xmit ZDACW 37242\n [Z Motor]
17-03-17 18:51:07.888 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:51:07.898 -07 000000502 INF: FPGA: 'ZDACW 37242' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:51:07.898 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:07.898 -07 000000623 INF: FPGA: Recv ZDACR 37242
17-03-17 18:51:07.908 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:07.908 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:07.908 -07 000000502 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 18:51:08.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:51:08.078 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:51:08.078 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:08.078 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:08.078 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:51:08.198 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 520 ms.
17-03-17 18:51:08.198 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 18:51:08.198 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:08.198 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:08.208 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 18:51:08.278 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:51:08.278 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:51:08.318 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:08.318 -07 000000012 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:51:08.328 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:08.328 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:08.328 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:51:08.328 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 18:51:09.278 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:09.278 -07 000000502 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:51:09.288 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:09.288 -07 000000462 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:09.308 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:09.308 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:51:09.308 -07 000000462 INF: Y Motor: Moved to 67.3730 after 1430 ms (table move)
17-03-17 18:51:09.308 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170483 mm (DAC = 37242)
17-03-17 18:51:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.308 -07 000000608 INF: FPGA: Recv ZSGSRD 35826
17-03-17 18:51:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.318 -07 000000415 INF: FPGA: Recv ZSGSRD 35826
17-03-17 18:51:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.328 -07 000000486 INF: FPGA: Recv ZSGSRD 35829
17-03-17 18:51:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35832
17-03-17 18:51:09.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.348 -07 000000382 INF: FPGA: Recv ZSGSRD 35834
17-03-17 18:51:09.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.358 -07 000000608 INF: FPGA: Recv ZSGSRD 35834
17-03-17 18:51:09.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.368 -07 000000438 INF: FPGA: Recv ZSGSRD 35828
17-03-17 18:51:09.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.378 -07 000000623 INF: FPGA: Recv ZSGSRD 35828
17-03-17 18:51:09.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.388 -07 000000382 INF: FPGA: Recv ZSGSRD 35823
17-03-17 18:51:09.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.398 -07 000000431 INF: FPGA: Recv ZSGSRD 35827
17-03-17 18:51:09.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:09.408 -07 000000438 INF: FPGA: Recv ZPIEZORD 31774
17-03-17 18:51:09.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.418 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.0 V.
17-03-17 18:51:09.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35829 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35823 (-169.6 uncal um), Max = 35834 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:51:09.418 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35829, posNoise = 5, negNoise = 6
17-03-17 18:51:09.418 -07 000000610 INF: Z Motor: After move to -0.170483, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:09.418 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:51:09.418 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:09.468 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:51:09.468 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:09.468 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.170496448838288. ----------
17-03-17 18:51:09.468 -07 000000610 INF: Cycle	18	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:09.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37065, sync = True, waitForSettling = True)
17-03-17 18:51:09.468 -07 000000610 INF: Z Motor: Moving to -0.169673 mm, started at -0.170496 mm, distance = 0.82 um
17-03-17 18:51:09.468 -07 000000610 INF: FPGA: Xmit ZDACW 37065\n [Z Motor]
17-03-17 18:51:09.468 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:51:09.478 -07 000000610 INF: FPGA: 'ZDACW 37065' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:51:09.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:09.478 -07 000000502 INF: FPGA: Recv ZDACR 37065
17-03-17 18:51:09.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.638 -07 000000608 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:51:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.648 -07 000000486 INF: FPGA: Recv ZSGSRD 35700
17-03-17 18:51:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.658 -07 000000623 INF: FPGA: Recv ZSGSRD 35707
17-03-17 18:51:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.668 -07 000000424 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:51:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.678 -07 000000541 INF: FPGA: Recv ZSGSRD 35701
17-03-17 18:51:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35703
17-03-17 18:51:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35703
17-03-17 18:51:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.708 -07 000000438 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:51:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.718 -07 000000476 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:51:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:09.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35701
17-03-17 18:51:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:09.738 -07 000000623 INF: FPGA: Recv ZPIEZORD 31619
17-03-17 18:51:09.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:09.748 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -9.0 V.
17-03-17 18:51:09.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35702 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35702 (-168.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35700 (-168.8 uncal um), Max = 35707 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:51:09.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35702, posNoise = 5, negNoise = 2
17-03-17 18:51:09.748 -07 000000610 INF: Z Motor: After move to -0.169673, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:09.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:51:09.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:09.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:09.748 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:09.748 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:09.748 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:09.748 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:09.748 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:09.748 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:09.748 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:09.748 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:09.748 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:09.748 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:09.758 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:51:09.758 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:09.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:51:09.758 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:09.768 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:51:09.768 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:51:09.768 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:51:09.768 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:51:09.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37242 150\n [Camera]
17-03-17 18:51:09.978 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:10.368 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:10.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:10.368 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:10.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:10.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:10.378 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:10.378 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:10.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:51:10.378 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:10.378 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:51:10.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37242 780
17-03-17 18:51:10.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:10.758 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:51:10.758 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:51:10.758 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:10.758 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:10.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:51:10.758 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:10.768 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:10.768 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:10.768 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:51:10.768 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:51:10.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:10.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:10.908 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:10.908 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:10.908 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:51:10.908 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:10.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:10.908 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:10.908 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:10.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 18:51:11.098 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:11.098 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:11.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37242 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-17 18:51:11.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:51:11.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.169680573896285. ------
17-03-17 18:51:11.098 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17547 mm
17-03-17 18:51:11.098 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:11.098 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:11.248 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:51:11.248 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 18:51:11.248 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:11.248 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 147 ms overall
17-03-17 18:51:11.248 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38331, sync = True, waitForSettling = False)
17-03-17 18:51:11.248 -07 000000476 INF: Z Motor: Moving to -0.175468 mm, started at -0.169681 mm, distance = -5.79 um
17-03-17 18:51:11.248 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:11.248 -07 000000415 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:51:11.258 -07 000000608 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:11.258 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:51:11.258 -07 000000608 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:11.258 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:11.258 -07 000000608 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:51:11.268 -07 000000476 INF: FPGA: Xmit ZDACW 38331\n [Z Motor]
17-03-17 18:51:11.268 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:51:11.278 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:11.278 -07 000000476 INF: FPGA: 'ZDACW 38331' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:51:11.288 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:11.288 -07 000000382 INF: FPGA: Recv ZDACR 38331
17-03-17 18:51:11.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:51:11.288 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:51:11.288 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:11.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:51:11.288 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:51:11.288 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:11.288 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:11.298 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:11.298 -07 000000476 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:51:11.298 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:11.298 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:51:11.298 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:51:11.458 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:51:11.458 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 18:51:11.628 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:11.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:11.648 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:51:11.648 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:51:11.708 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:11.708 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:51:11.718 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:11.718 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:11.718 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:51:11.718 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 18:51:12.668 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:12.668 -07 000000431 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:51:12.678 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:12.678 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:12.688 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:12.688 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:12.688 -07 000000608 INF: Y Motor: Moved to 68.2056 after 1445 ms (table move)
17-03-17 18:51:12.698 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175468 mm (DAC = 38331)
17-03-17 18:51:12.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.698 -07 000000012 INF: FPGA: Recv ZSGSRD 36609
17-03-17 18:51:12.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:12.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.708 -07 000000476 INF: FPGA: Recv ZSGSRD 36608
17-03-17 18:51:12.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.718 -07 000000438 INF: FPGA: Recv ZSGSRD 36608
17-03-17 18:51:12.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.728 -07 000000512 INF: FPGA: Recv ZSGSRD 36607
17-03-17 18:51:12.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.738 -07 000000012 INF: FPGA: Recv ZSGSRD 36606
17-03-17 18:51:12.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.748 -07 000000608 INF: FPGA: Recv ZSGSRD 36598
17-03-17 18:51:12.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.758 -07 000000476 INF: FPGA: Recv ZSGSRD 36602
17-03-17 18:51:12.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.768 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.768 -07 000000502 INF: FPGA: Recv ZSGSRD 36597
17-03-17 18:51:12.778 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.778 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.778 -07 000000012 INF: FPGA: Recv ZSGSRD 36604
17-03-17 18:51:12.788 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.788 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:12.788 -07 000000608 INF: FPGA: Recv ZSGSRD 36608
17-03-17 18:51:12.798 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.798 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:12.798 -07 000000476 INF: FPGA: Recv ZPIEZORD 32798
17-03-17 18:51:12.808 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:12.808 -07 000000541 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.4 V.
17-03-17 18:51:12.808 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36605 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36606 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36597 (-174.5 uncal um), Max = 36609 (-174.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:51:12.808 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36605, posNoise = 4, negNoise = 8
17-03-17 18:51:12.808 -07 000000541 INF: Z Motor: After move to -0.175468, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:12.808 -07 000000541 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-17 18:51:12.808 -07 000000541 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:12.858 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1754 ms
17-03-17 18:51:12.858 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:12.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:12.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:12.858 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:12.858 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:12.858 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:51:12.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:12.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:12.858 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:51:12.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:51:12.868 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:51:12.878 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:51:12.878 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:51:12.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:51:12.928 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:51:13.128 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:51:13.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:51:13.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:51:13.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:51:13.168 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:51:13.168 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:51:13.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 288 ms overall
17-03-17 18:51:13.198 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.974486,
17-03-17 18:51:13.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:51:13.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:13.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:51:13.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 18:51:13.268 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:13.268 -07 000000012 INF: Autofocus start
17-03-17 18:51:13.268 -07 000000012 INF: MeasureProfile start
17-03-17 18:51:13.268 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:13.278 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:13.278 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:51:13.278 -07 000000012 INF: MeasureProfile done
17-03-17 18:51:13.278 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:51:13.278 -07 000000012 INF: Autofocus finished
17-03-17 18:51:13.478 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:51:13.478 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:51:13.478 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175481637460295. ----------
17-03-17 18:51:13.478 -07 000000610 INF: Cycle	18	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:13.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36846, sync = True, waitForSettling = True)
17-03-17 18:51:13.488 -07 000000610 INF: Z Motor: Moving to -0.168670 mm, started at -0.175482 mm, distance = 6.81 um
17-03-17 18:51:13.488 -07 000000610 INF: FPGA: Xmit ZDACW 36846\n [Z Motor]
17-03-17 18:51:13.488 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:51:13.498 -07 000000610 INF: FPGA: 'ZDACW 36846' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:13.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:13.498 -07 000000476 INF: FPGA: Recv ZDACR 36846
17-03-17 18:51:13.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:13.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.658 -07 000000415 INF: FPGA: Recv ZSGSRD 35552
17-03-17 18:51:13.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.668 -07 000000431 INF: FPGA: Recv ZSGSRD 35547
17-03-17 18:51:13.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.678 -07 000000438 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:51:13.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.688 -07 000000424 INF: FPGA: Recv ZSGSRD 35545
17-03-17 18:51:13.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35544
17-03-17 18:51:13.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.708 -07 000000512 INF: FPGA: Recv ZSGSRD 35549
17-03-17 18:51:13.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.718 -07 000000502 INF: FPGA: Recv ZSGSRD 35543
17-03-17 18:51:13.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.728 -07 000000424 INF: FPGA: Recv ZSGSRD 35549
17-03-17 18:51:13.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.738 -07 000000541 INF: FPGA: Recv ZSGSRD 35548
17-03-17 18:51:13.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:13.748 -07 000000512 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:51:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:13.758 -07 000000502 INF: FPGA: Recv ZPIEZORD 31418
17-03-17 18:51:13.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:13.768 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.1 V.
17-03-17 18:51:13.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35547 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35546 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35543 (-167.8 uncal um), Max = 35552 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:51:13.768 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35547, posNoise = 5, negNoise = 4
17-03-17 18:51:13.768 -07 000000610 INF: Z Motor: After move to -0.168670, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:13.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:51:13.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:13.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:13.768 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:13.768 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:13.768 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:13.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:13.768 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:13.768 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:13.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:13.768 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:13.768 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:13.768 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:13.778 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:51:13.778 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:13.778 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:13.778 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:13.778 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:51:13.788 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:51:13.788 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:51:13.788 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:51:13.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37023 150\n [Camera]
17-03-17 18:51:13.988 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:14.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:14.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:14.378 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:14.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:14.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:14.388 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:14.388 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:14.388 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1053036592, 0x0, 418435064) start.
17-03-17 18:51:14.388 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:14.388 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:51:14.578 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37023 780
17-03-17 18:51:14.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:14.768 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:51:14.768 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:51:14.768 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:14.768 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1053036592, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:51:14.768 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:51:14.768 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:14.778 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:51:14.778 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:51:14.778 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:14.778 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:51:14.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:14.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:14.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:14.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:14.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:14.918 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:14.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1088458856, 0x0, 391868352) start.
17-03-17 18:51:14.918 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:14.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:14.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1123881120, 0x0, 418435064) start.
17-03-17 18:51:15.108 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:51:15.108 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:15.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37023 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-17 18:51:15.108 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169341
17-03-17 18:51:15.108 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16934 mm
17-03-17 18:51:15.108 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:15.108 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:51:15.108 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:51:15.108 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36993, sync = True, waitForSettling = False)
17-03-17 18:51:15.108 -07 000000569 INF: Z Motor: Moving to -0.169343 mm, started at -0.168685 mm, distance = -0.66 um
17-03-17 18:51:15.108 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:15.118 -07 000000569 INF: FPGA: Xmit ZDACW 36993\n [Z Motor]
17-03-17 18:51:15.118 -07 000000541 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:51:15.118 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:15.118 -07 000000486 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:15.118 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:15.118 -07 000000486 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:51:15.118 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:51:15.128 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:15.128 -07 000000569 INF: FPGA: 'ZDACW 36993' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:51:15.138 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:15.138 -07 000000415 INF: FPGA: Recv ZDACR 36993
17-03-17 18:51:15.148 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:15.148 -07 000000569 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 18:51:15.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1123881120, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:51:15.298 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:51:15.298 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:15.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1088458856, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:51:15.298 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:51:15.298 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:15.308 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:15.308 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:15.308 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:51:15.318 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:51:15.498 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:51:15.498 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:51:15.538 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:15.538 -07 000000502 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:51:15.548 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:15.548 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:15.548 -07 000000486 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:51:15.548 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.837 mm, average velocity = 2.169 mm/sec
17-03-17 18:51:16.498 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:16.498 -07 000000512 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:51:16.508 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:16.508 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:16.528 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:16.528 -07 000000486 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:16.528 -07 000000486 INF: Y Motor: Moved to 69.0278 after 1413 ms (table move)
17-03-17 18:51:16.528 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169343 mm (DAC = 36993)
17-03-17 18:51:16.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.528 -07 000000541 INF: FPGA: Recv ZSGSRD 35656
17-03-17 18:51:16.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:51:16.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.538 -07 000000486 INF: FPGA: Recv ZSGSRD 35651
17-03-17 18:51:16.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35646
17-03-17 18:51:16.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.558 -07 000000415 INF: FPGA: Recv ZSGSRD 35653
17-03-17 18:51:16.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35642
17-03-17 18:51:16.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.578 -07 000000486 INF: FPGA: Recv ZSGSRD 35648
17-03-17 18:51:16.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.588 -07 000000438 INF: FPGA: Recv ZSGSRD 35654
17-03-17 18:51:16.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.598 -07 000000569 INF: FPGA: Recv ZSGSRD 35651
17-03-17 18:51:16.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.608 -07 000000431 INF: FPGA: Recv ZSGSRD 35648
17-03-17 18:51:16.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.618 -07 000000608 INF: FPGA: Recv ZSGSRD 35655
17-03-17 18:51:16.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:16.628 -07 000000476 INF: FPGA: Recv ZPIEZORD 31550
17-03-17 18:51:16.628 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:16.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:16.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.638 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.0 V.
17-03-17 18:51:16.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35650 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35651 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35642 (-168.4 uncal um), Max = 35656 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:51:16.638 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35650, posNoise = 6, negNoise = 8
17-03-17 18:51:16.638 -07 000000610 INF: Z Motor: After move to -0.169343, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:16.638 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 108 ms (allowed 150 ms), total time = 1523 ms
17-03-17 18:51:16.638 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:16.688 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:51:16.688 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:16.688 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.169346514864913. ----------
17-03-17 18:51:16.688 -07 000000610 INF: Cycle	18	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:16.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36816, sync = True, waitForSettling = True)
17-03-17 18:51:16.688 -07 000000610 INF: Z Motor: Moving to -0.168533 mm, started at -0.169347 mm, distance = 0.81 um
17-03-17 18:51:16.688 -07 000000610 INF: FPGA: Xmit ZDACW 36816\n [Z Motor]
17-03-17 18:51:16.688 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:51:16.698 -07 000000610 INF: FPGA: 'ZDACW 36816' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:16.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:16.698 -07 000000431 INF: FPGA: Recv ZDACR 36816
17-03-17 18:51:16.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:16.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.858 -07 000000608 INF: FPGA: Recv ZSGSRD 35526
17-03-17 18:51:16.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.868 -07 000000541 INF: FPGA: Recv ZSGSRD 35517
17-03-17 18:51:16.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.878 -07 000000569 INF: FPGA: Recv ZSGSRD 35517
17-03-17 18:51:16.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.888 -07 000000486 INF: FPGA: Recv ZSGSRD 35527
17-03-17 18:51:16.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35529
17-03-17 18:51:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:16.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35526
17-03-17 18:51:16.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.918 -07 000000012 INF: FPGA: Recv ZSGSRD 35522
17-03-17 18:51:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.928 -07 000000541 INF: FPGA: Recv ZSGSRD 35527
17-03-17 18:51:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.938 -07 000000476 INF: FPGA: Recv ZSGSRD 35521
17-03-17 18:51:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:16.948 -07 000000462 INF: FPGA: Recv ZSGSRD 35523
17-03-17 18:51:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:16.958 -07 000000382 INF: FPGA: Recv ZPIEZORD 31405
17-03-17 18:51:16.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:16.968 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.1 V.
17-03-17 18:51:16.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35524 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35524 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35517 (-167.6 uncal um), Max = 35529 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:51:16.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35524, posNoise = 5, negNoise = 7
17-03-17 18:51:16.968 -07 000000610 INF: Z Motor: After move to -0.168533, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:16.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:51:16.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:16.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:16.968 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:16.968 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:16.968 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:16.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:16.968 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:16.968 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:16.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:51:16.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:16.968 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:16.968 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:16.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:51:16.968 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:16.978 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:16.978 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:16.978 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:51:16.978 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:51:16.978 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:51:16.988 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:51:16.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36993 150\n [Camera]
17-03-17 18:51:17.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:17.578 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:17.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:17.588 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:17.588 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:17.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:51:17.588 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:17.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:17.588 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:17.588 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:17.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:51:17.778 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36993 780
17-03-17 18:51:17.928 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:17.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:51:17.968 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:51:17.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:17.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:51:17.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:51:17.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:17.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:17.968 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:17.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:17.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:51:18.118 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:18.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:18.118 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:18.118 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:18.118 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:51:18.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:18.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:18.118 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:18.118 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:18.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:51:18.308 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:51:18.308 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:18.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36993 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-17 18:51:18.308 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168854
17-03-17 18:51:18.308 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16885 mm
17-03-17 18:51:18.308 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:18.318 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:51:18.318 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:51:18.318 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:18.318 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36886, sync = True, waitForSettling = False)
17-03-17 18:51:18.318 -07 000000569 INF: Z Motor: Moving to -0.168853 mm, started at -0.168537 mm, distance = -0.32 um
17-03-17 18:51:18.318 -07 000000476 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:51:18.328 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:18.328 -07 000000012 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:18.328 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:18.328 -07 000000569 INF: FPGA: Xmit ZDACW 36886\n [Z Motor]
17-03-17 18:51:18.328 -07 000000012 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:51:18.328 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:51:18.338 -07 000000569 INF: FPGA: 'ZDACW 36886' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:18.338 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:18.348 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:18.348 -07 000000424 INF: FPGA: Recv ZDACR 36886
17-03-17 18:51:18.358 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:18.358 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:51:18.498 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:51:18.498 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:51:18.498 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:18.498 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:51:18.498 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:51:18.498 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:18.508 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:18.508 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:18.508 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:51:18.508 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:51:18.558 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.979922,
17-03-17 18:51:18.708 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:51:18.708 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:51:18.748 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:18.748 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:51:18.758 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:18.758 -07 000000012 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:18.758 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:51:18.758 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-17 18:51:19.708 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:19.708 -07 000000438 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:51:19.718 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:19.718 -07 000000012 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:19.738 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:19.738 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:19.738 -07 000000012 INF: Y Motor: Moved to 69.8638 after 1422 ms (table move)
17-03-17 18:51:19.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168853 mm (DAC = 36886)
17-03-17 18:51:19.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.738 -07 000000431 INF: FPGA: Recv ZSGSRD 35576
17-03-17 18:51:19.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:19.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35572
17-03-17 18:51:19.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.758 -07 000000424 INF: FPGA: Recv ZSGSRD 35573
17-03-17 18:51:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.768 -07 000000012 INF: FPGA: Recv ZSGSRD 35566
17-03-17 18:51:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.778 -07 000000569 INF: FPGA: Recv ZSGSRD 35578
17-03-17 18:51:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.788 -07 000000462 INF: FPGA: Recv ZSGSRD 35573
17-03-17 18:51:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.798 -07 000000415 INF: FPGA: Recv ZSGSRD 35573
17-03-17 18:51:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35575
17-03-17 18:51:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35574
17-03-17 18:51:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:19.858 -07 000000012 INF: FPGA: Recv ZSGSRD 35577
17-03-17 18:51:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:19.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:19.878 -07 000000486 INF: FPGA: Recv ZPIEZORD 31434
17-03-17 18:51:19.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:19.888 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.1 V.
17-03-17 18:51:19.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35574 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35574 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35566 (-167.9 uncal um), Max = 35578 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:51:19.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35574, posNoise = 4, negNoise = 8
17-03-17 18:51:19.888 -07 000000610 INF: Z Motor: After move to -0.168853, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:19.888 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 146 ms (allowed 150 ms), total time = 1570 ms
17-03-17 18:51:19.888 -07 000000610 INF: Z Motor: Waiting extra 4 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:19.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 18:51:19.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:19.898 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.168858274742139. ----------
17-03-17 18:51:19.898 -07 000000610 INF: Cycle	18	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:19.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36709, sync = True, waitForSettling = True)
17-03-17 18:51:19.898 -07 000000610 INF: Z Motor: Moving to -0.168043 mm, started at -0.168858 mm, distance = 0.82 um
17-03-17 18:51:19.898 -07 000000610 INF: FPGA: Xmit ZDACW 36709\n [Z Motor]
17-03-17 18:51:19.898 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:51:19.908 -07 000000610 INF: FPGA: 'ZDACW 36709' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:51:19.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:19.908 -07 000000462 INF: FPGA: Recv ZDACR 36709
17-03-17 18:51:19.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:19.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:20.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.068 -07 000000012 INF: FPGA: Recv ZSGSRD 35447
17-03-17 18:51:20.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.078 -07 000000415 INF: FPGA: Recv ZSGSRD 35451
17-03-17 18:51:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.088 -07 000000502 INF: FPGA: Recv ZSGSRD 35452
17-03-17 18:51:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.098 -07 000000541 INF: FPGA: Recv ZSGSRD 35447
17-03-17 18:51:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.108 -07 000000476 INF: FPGA: Recv ZSGSRD 35452
17-03-17 18:51:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.118 -07 000000415 INF: FPGA: Recv ZSGSRD 35447
17-03-17 18:51:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.128 -07 000000431 INF: FPGA: Recv ZSGSRD 35449
17-03-17 18:51:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35451
17-03-17 18:51:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.148 -07 000000476 INF: FPGA: Recv ZSGSRD 35447
17-03-17 18:51:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:20.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35450
17-03-17 18:51:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:20.168 -07 000000415 INF: FPGA: Recv ZPIEZORD 31246
17-03-17 18:51:20.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:20.178 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.3 V.
17-03-17 18:51:20.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35449 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35450 (-167.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35447 (-167.2 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:51:20.178 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35449, posNoise = 3, negNoise = 2
17-03-17 18:51:20.178 -07 000000610 INF: Z Motor: After move to -0.168043, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:20.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:51:20.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:20.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:20.178 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:20.178 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:20.178 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:20.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:20.178 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:20.178 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:20.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:20.178 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:20.178 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:20.178 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:20.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:20.188 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:20.188 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:51:20.188 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:20.198 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:51:20.198 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:51:20.198 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:51:20.198 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:51:20.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36886 150\n [Camera]
17-03-17 18:51:20.398 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:20.798 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:20.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:20.798 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:20.798 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:20.798 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:51:20.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:20.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:20.798 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:20.798 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:20.798 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:51:20.988 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36886 780
17-03-17 18:51:21.138 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:21.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:51:21.178 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:51:21.178 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:21.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:51:21.178 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:51:21.178 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:21.188 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:51:21.188 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:51:21.188 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:51:21.188 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:51:21.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:21.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:21.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:21.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:21.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:51:21.338 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:21.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:21.338 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:21.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:21.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:51:21.518 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:21.528 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:21.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36886 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-17 18:51:21.528 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168447
17-03-17 18:51:21.528 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16845 mm
17-03-17 18:51:21.528 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:21.528 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:51:21.528 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:51:21.528 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:21.528 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 36797, sync = True, waitForSettling = False)
17-03-17 18:51:21.528 -07 000000424 INF: Z Motor: Moving to -0.168446 mm, started at -0.168055 mm, distance = -0.39 um
17-03-17 18:51:21.528 -07 000000512 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:51:21.538 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:21.538 -07 000000502 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:21.538 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:21.538 -07 000000502 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:51:21.538 -07 000000424 INF: FPGA: Xmit ZDACW 36797\n [Z Motor]
17-03-17 18:51:21.538 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:51:21.548 -07 000000424 INF: FPGA: 'ZDACW 36797' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:51:21.548 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:21.548 -07 000000415 INF: FPGA: Recv ZDACR 36797
17-03-17 18:51:21.558 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:21.558 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:21.558 -07 000000424 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 18:51:21.628 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:21.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:21.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:51:21.718 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:51:21.718 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:21.718 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:51:21.718 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:21.718 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:21.728 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:21.728 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:21.728 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:51:21.728 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:51:21.928 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:51:21.928 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:51:21.968 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:21.968 -07 000000569 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:51:21.978 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:51:21.978 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:21.978 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:51:21.978 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 18:51:22.928 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:22.928 -07 000000415 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:51:22.938 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:22.938 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:22.958 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:22.958 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:22.958 -07 000000502 INF: Y Motor: Moved to 70.6890 after 1427 ms (table move)
17-03-17 18:51:22.958 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168446 mm (DAC = 36797)
17-03-17 18:51:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:22.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35514
17-03-17 18:51:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:22.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35501
17-03-17 18:51:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:22.978 -07 000000512 INF: FPGA: Recv ZSGSRD 35501
17-03-17 18:51:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:22.988 -07 000000012 INF: FPGA: Recv ZSGSRD 35506
17-03-17 18:51:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:22.998 -07 000000623 INF: FPGA: Recv ZSGSRD 35523
17-03-17 18:51:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.008 -07 000000541 INF: FPGA: Recv ZSGSRD 35512
17-03-17 18:51:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.018 -07 000000382 INF: FPGA: Recv ZSGSRD 35510
17-03-17 18:51:23.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.028 -07 000000476 INF: FPGA: Recv ZSGSRD 35512
17-03-17 18:51:23.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35511
17-03-17 18:51:23.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.048 -07 000000424 INF: FPGA: Recv ZSGSRD 35514
17-03-17 18:51:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:23.058 -07 000000415 INF: FPGA: Recv ZPIEZORD 31330
17-03-17 18:51:23.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.068 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.615 V. Piezo Error = -9.2 V.
17-03-17 18:51:23.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35510 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35512 (-167.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 35501 (-167.5 uncal um), Max = 35523 (-167.7 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:51:23.068 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35510, posNoise = 13, negNoise = 9
17-03-17 18:51:23.068 -07 000000610 INF: Z Motor: After move to -0.168446, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:23.068 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:51:23.068 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:23.118 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 18:51:23.118 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:23.118 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.168447125165067. ----------
17-03-17 18:51:23.118 -07 000000610 INF: Cycle	18	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:23.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36621, sync = True, waitForSettling = True)
17-03-17 18:51:23.118 -07 000000610 INF: Z Motor: Moving to -0.167640 mm, started at -0.168447 mm, distance = 0.81 um
17-03-17 18:51:23.118 -07 000000610 INF: FPGA: Xmit ZDACW 36621\n [Z Motor]
17-03-17 18:51:23.118 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:51:23.128 -07 000000610 INF: FPGA: 'ZDACW 36621' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:23.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:23.128 -07 000000431 INF: FPGA: Recv ZDACR 36621
17-03-17 18:51:23.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:23.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.288 -07 000000623 INF: FPGA: Recv ZSGSRD 35386
17-03-17 18:51:23.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:23.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35381
17-03-17 18:51:23.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:51:23.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35382
17-03-17 18:51:23.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.328 -07 000000424 INF: FPGA: Recv ZSGSRD 35389
17-03-17 18:51:23.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.338 -07 000000382 INF: FPGA: Recv ZSGSRD 35384
17-03-17 18:51:23.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.348 -07 000000012 INF: FPGA: Recv ZSGSRD 35383
17-03-17 18:51:23.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35384
17-03-17 18:51:23.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.368 -07 000000608 INF: FPGA: Recv ZSGSRD 35378
17-03-17 18:51:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:23.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35385
17-03-17 18:51:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:23.388 -07 000000486 INF: FPGA: Recv ZPIEZORD 31192
17-03-17 18:51:23.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:23.398 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -9.2 V.
17-03-17 18:51:23.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35384 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35384 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35378 (-166.7 uncal um), Max = 35389 (-166.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:51:23.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35384, posNoise = 5, negNoise = 6
17-03-17 18:51:23.398 -07 000000610 INF: Z Motor: After move to -0.167640, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:23.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:51:23.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:23.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:23.398 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:23.398 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:23.398 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:23.398 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:23.398 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:23.398 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:23.398 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:23.398 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:23.398 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:23.398 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:23.408 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:23.408 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:23.408 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:51:23.408 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:23.418 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:51:23.418 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:51:23.418 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:51:23.418 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:51:23.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36797 150\n [Camera]
17-03-17 18:51:23.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:23.918 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.016692,
17-03-17 18:51:24.018 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:24.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:24.018 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:24.018 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:24.018 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:51:24.018 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:24.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:24.018 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:24.148 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:24.158 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:51:24.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36797 780
17-03-17 18:51:24.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:24.408 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:51:24.408 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:51:24.408 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:24.408 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:24.408 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:51:24.518 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 18:51:24.518 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 18:51:24.518 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:24.528 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:24.528 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 18:51:24.548 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:24.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:24.548 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:24.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:24.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:24.558 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:24.558 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:24.558 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:51:24.568 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:24.568 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:51:24.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:51:24.738 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:24.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36797 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:51:24.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:51:24.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167637674435205. ------
17-03-17 18:51:24.748 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:24.748 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17436 mm
17-03-17 18:51:24.748 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:24.748 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:24.748 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38089, sync = True, waitForSettling = False)
17-03-17 18:51:24.748 -07 000000486 INF: Z Motor: Moving to -0.174360 mm, started at -0.167638 mm, distance = -6.72 um
17-03-17 18:51:24.748 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:51:24.748 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:51:24.758 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:24.758 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:24.758 -07 000000382 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:51:24.768 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:24.768 -07 000000541 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:24.768 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:24.768 -07 000000541 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:51:24.768 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:51:24.778 -07 000000486 INF: FPGA: Xmit ZDACW 38089\n [Z Motor]
17-03-17 18:51:24.778 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:51:24.788 -07 000000486 INF: FPGA: 'ZDACW 38089' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:51:24.788 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:24.798 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:24.798 -07 000000551 INF: FPGA: Recv ZDACR 38089
17-03-17 18:51:24.808 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:24.808 -07 000000486 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:51:24.938 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:51:24.938 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:51:24.938 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:24.948 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:51:24.948 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:51:24.948 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:24.948 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:24.948 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:51:24.948 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:24.958 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:51:24.968 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:51:24.968 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 217 ms overall
17-03-17 18:51:25.168 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:51:25.168 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 18:51:25.198 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:25.198 -07 000000551 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:51:25.208 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:25.208 -07 000000541 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:25.208 -07 000000541 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:51:25.208 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.109 mm/sec
17-03-17 18:51:26.158 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:26.158 -07 000000438 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:51:26.168 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:26.168 -07 000000541 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:26.188 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:26.188 -07 000000541 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:26.188 -07 000000541 INF: Y Motor: Moved to 71.5195 after 1431 ms (table move)
17-03-17 18:51:26.188 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174360 mm (DAC = 38089)
17-03-17 18:51:26.188 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.188 -07 000000512 INF: FPGA: Recv ZSGSRD 36430
17-03-17 18:51:26.198 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:26.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.198 -07 000000569 INF: FPGA: Recv ZSGSRD 36425
17-03-17 18:51:26.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.208 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.208 -07 000000431 INF: FPGA: Recv ZSGSRD 36426
17-03-17 18:51:26.218 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.218 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.218 -07 000000433 INF: FPGA: Recv ZSGSRD 36431
17-03-17 18:51:26.228 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.228 -07 000000382 INF: FPGA: Recv ZSGSRD 36434
17-03-17 18:51:26.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.238 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.238 -07 000000486 INF: FPGA: Recv ZSGSRD 36442
17-03-17 18:51:26.248 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.248 -07 000000502 INF: FPGA: Recv ZSGSRD 36428
17-03-17 18:51:26.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.258 -07 000000424 INF: FPGA: Recv ZSGSRD 36430
17-03-17 18:51:26.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.268 -07 000000415 INF: FPGA: Recv ZSGSRD 36428
17-03-17 18:51:26.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:26.278 -07 000000569 INF: FPGA: Recv ZSGSRD 36427
17-03-17 18:51:26.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.288 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:26.288 -07 000000438 INF: FPGA: Recv ZPIEZORD 32552
17-03-17 18:51:26.298 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:26.298 -07 000000476 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.6 V.
17-03-17 18:51:26.298 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36430 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36429 (-173.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36425 (-173.4 uncal um), Max = 36442 (-173.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:51:26.298 -07 000000476 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36430, posNoise = 12, negNoise = 5
17-03-17 18:51:26.298 -07 000000476 INF: Z Motor: After move to -0.174360, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:26.298 -07 000000476 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:51:26.298 -07 000000476 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:26.348 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:51:26.348 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:26.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:26.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:26.348 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:26.348 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:26.348 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:51:26.348 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:26.348 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:26.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:51:26.358 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:26.358 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:51:26.368 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:51:26.368 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:51:26.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:51:26.418 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:51:26.618 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:51:26.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:51:26.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:51:26.728 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:26.728 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:51:26.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:51:26.728 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:51:26.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 347 ms to get response, and 358 ms overall
17-03-17 18:51:26.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:51:26.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:26.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:51:26.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 241 ms.
17-03-17 18:51:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:26.928 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:26.928 -07 000000623 INF: Autofocus start
17-03-17 18:51:26.928 -07 000000623 INF: MeasureProfile start
17-03-17 18:51:26.928 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:26.938 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:26.938 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:51:26.938 -07 000000623 INF: MeasureProfile done
17-03-17 18:51:26.938 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:51:26.938 -07 000000623 INF: Autofocus finished
17-03-17 18:51:27.138 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:51:27.138 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:51:27.138 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174357400335487. ----------
17-03-17 18:51:27.138 -07 000000610 INF: Cycle	18	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:27.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36586, sync = True, waitForSettling = True)
17-03-17 18:51:27.148 -07 000000610 INF: Z Motor: Moving to -0.167480 mm, started at -0.174357 mm, distance = 6.88 um
17-03-17 18:51:27.148 -07 000000610 INF: FPGA: Xmit ZDACW 36586\n [Z Motor]
17-03-17 18:51:27.148 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:51:27.158 -07 000000610 INF: FPGA: 'ZDACW 36586' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:27.158 -07 000000569 INF: FPGA: Recv ZDACR 36586
17-03-17 18:51:27.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:27.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.318 -07 000000608 INF: FPGA: Recv ZSGSRD 35364
17-03-17 18:51:27.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:27.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.328 -07 000000476 INF: FPGA: Recv ZSGSRD 35358
17-03-17 18:51:27.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.338 -07 000000415 INF: FPGA: Recv ZSGSRD 35362
17-03-17 18:51:27.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.348 -07 000000433 INF: FPGA: Recv ZSGSRD 35356
17-03-17 18:51:27.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35363
17-03-17 18:51:27.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.368 -07 000000551 INF: FPGA: Recv ZSGSRD 35361
17-03-17 18:51:27.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.378 -07 000000486 INF: FPGA: Recv ZSGSRD 35360
17-03-17 18:51:27.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.388 -07 000000502 INF: FPGA: Recv ZSGSRD 35360
17-03-17 18:51:27.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.398 -07 000000512 INF: FPGA: Recv ZSGSRD 35361
17-03-17 18:51:27.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:27.408 -07 000000476 INF: FPGA: Recv ZSGSRD 35360
17-03-17 18:51:27.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:27.418 -07 000000012 INF: FPGA: Recv ZPIEZORD 31142
17-03-17 18:51:27.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:27.428 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.3 V.
17-03-17 18:51:27.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35360 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35356 (-166.6 uncal um), Max = 35364 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:51:27.428 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35360, posNoise = 4, negNoise = 4
17-03-17 18:51:27.428 -07 000000610 INF: Z Motor: After move to -0.167480, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:27.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:51:27.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:27.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:27.428 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:27.428 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:27.428 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:27.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:27.428 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:27.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:27.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:51:27.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:27.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:27.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:27.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:27.438 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:27.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:27.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:27.448 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:51:27.448 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:51:27.448 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:51:27.448 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:51:27.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36763 150\n [Camera]
17-03-17 18:51:27.648 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:28.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:28.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:28.038 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:28.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:28.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:28.048 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:28.048 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:28.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:51:28.048 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:28.048 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:51:28.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36763 780
17-03-17 18:51:28.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:28.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:51:28.428 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:51:28.428 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:28.428 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:51:28.428 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:51:28.428 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:28.428 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:28.428 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:51:28.438 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:28.438 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:51:28.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:28.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:28.578 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:28.578 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:28.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 18:51:28.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:28.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:28.578 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:28.578 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:28.578 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) start.
17-03-17 18:51:28.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:51:28.768 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:28.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36763 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:51:28.768 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167381
17-03-17 18:51:28.768 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16738 mm
17-03-17 18:51:28.768 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:28.778 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:51:28.778 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:51:28.778 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 36564, sync = True, waitForSettling = False)
17-03-17 18:51:28.778 -07 000000623 INF: Z Motor: Moving to -0.167379 mm, started at -0.167483 mm, distance = 0.10 um
17-03-17 18:51:28.778 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:28.778 -07 000000431 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:51:28.788 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:28.788 -07 000000623 INF: FPGA: Xmit ZDACW 36564\n [Z Motor]
17-03-17 18:51:28.788 -07 000000462 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:28.788 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:51:28.788 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:28.788 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:51:28.798 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:28.798 -07 000000623 INF: FPGA: 'ZDACW 36564' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:51:28.808 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:28.808 -07 000000382 INF: FPGA: Recv ZDACR 36564
17-03-17 18:51:28.818 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:28.818 -07 000000623 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:51:28.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:51:28.958 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:51:28.958 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:28.958 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:51:28.958 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:51:28.958 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:28.958 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:28.968 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:28.968 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:28.978 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:51:29.168 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:51:29.168 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:51:29.208 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:29.208 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:51:29.218 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:29.218 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:29.218 -07 000000462 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:51:29.218 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.196 mm/sec
17-03-17 18:51:29.278 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.011254,
17-03-17 18:51:30.168 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:30.168 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:51:30.178 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:30.178 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:30.198 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:30.198 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:30.198 -07 000000462 INF: Y Motor: Moved to 72.3501 after 1419 ms (table move)
17-03-17 18:51:30.198 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167379 mm (DAC = 36564)
17-03-17 18:51:30.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.198 -07 000000012 INF: FPGA: Recv ZSGSRD 35340
17-03-17 18:51:30.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.208 -07 000000502 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:51:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35344
17-03-17 18:51:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.228 -07 000000551 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:51:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.238 -07 000000608 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:51:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.248 -07 000000433 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:51:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.268 -07 000000608 INF: FPGA: Recv ZSGSRD 35346
17-03-17 18:51:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.278 -07 000000438 INF: FPGA: Recv ZSGSRD 35343
17-03-17 18:51:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:51:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35345
17-03-17 18:51:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:30.308 -07 000000476 INF: FPGA: Recv ZPIEZORD 31176
17-03-17 18:51:30.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.318 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -9.2 V.
17-03-17 18:51:30.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35344 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35344 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35340 (-166.5 uncal um), Max = 35347 (-166.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:51:30.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35344, posNoise = 3, negNoise = 4
17-03-17 18:51:30.318 -07 000000610 INF: Z Motor: After move to -0.167379, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:30.318 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 117 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:51:30.318 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:30.358 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:51:30.358 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:30.358 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.167380705949534. ----------
17-03-17 18:51:30.358 -07 000000610 INF: Cycle	18	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:30.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36388, sync = True, waitForSettling = True)
17-03-17 18:51:30.358 -07 000000610 INF: Z Motor: Moving to -0.166574 mm, started at -0.167381 mm, distance = 0.81 um
17-03-17 18:51:30.358 -07 000000610 INF: FPGA: Xmit ZDACW 36388\n [Z Motor]
17-03-17 18:51:30.368 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:51:30.368 -07 000000610 INF: FPGA: 'ZDACW 36388' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 18:51:30.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:30.368 -07 000000512 INF: FPGA: Recv ZDACR 36388
17-03-17 18:51:30.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:51:30.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:30.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.528 -07 000000433 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:51:30.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:30.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.538 -07 000000476 INF: FPGA: Recv ZSGSRD 35218
17-03-17 18:51:30.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.548 -07 000000486 INF: FPGA: Recv ZSGSRD 35227
17-03-17 18:51:30.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.558 -07 000000502 INF: FPGA: Recv ZSGSRD 35224
17-03-17 18:51:30.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.578 -07 000000433 INF: FPGA: Recv ZSGSRD 35219
17-03-17 18:51:30.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:30.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.598 -07 000000486 INF: FPGA: Recv ZSGSRD 35220
17-03-17 18:51:30.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:30.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.608 -07 000000551 INF: FPGA: Recv ZSGSRD 35219
17-03-17 18:51:30.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.628 -07 000000486 INF: FPGA: Recv ZSGSRD 35224
17-03-17 18:51:30.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:30.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.638 -07 000000462 INF: FPGA: Recv ZSGSRD 35218
17-03-17 18:51:30.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:30.668 -07 000000433 INF: FPGA: Recv ZSGSRD 35220
17-03-17 18:51:30.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:30.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:30.678 -07 000000569 INF: FPGA: Recv ZPIEZORD 30980
17-03-17 18:51:30.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:30.688 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.3 V.
17-03-17 18:51:30.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35221 (-165.7 uncal um), Error = 0.8 uncal um, Median = 35220 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35217 (-165.7 uncal um), Max = 35227 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:51:30.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35221, posNoise = 6, negNoise = 4
17-03-17 18:51:30.688 -07 000000610 INF: Z Motor: After move to -0.166574, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:30.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-17 18:51:30.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:30.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:30.688 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:30.688 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:30.688 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:30.688 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:30.688 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:30.688 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:30.688 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:51:30.688 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:30.688 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:30.688 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:30.698 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:51:30.698 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:51:30.698 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:30.698 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:30.708 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:51:30.708 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:51:30.708 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:51:30.708 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:51:30.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36564 150\n [Camera]
17-03-17 18:51:30.908 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:31.298 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:31.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:31.298 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:31.298 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:31.298 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1090293864, 0x0, 391868352) start.
17-03-17 18:51:31.308 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:31.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:31.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:31.308 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:31.308 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1125716128, 0x0, 418435064) start.
17-03-17 18:51:31.498 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36564 780
17-03-17 18:51:31.628 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:31.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:31.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:31.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1125716128, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:51:31.688 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:51:31.688 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1090293864, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:51:31.688 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:51:31.688 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:31.688 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:31.688 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:31.688 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:31.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:51:31.698 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:51:31.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:31.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:31.838 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:31.838 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:31.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:51:31.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:31.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:31.838 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:31.958 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:31.958 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:51:32.028 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:32.028 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:32.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36564 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-17 18:51:32.028 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167139
17-03-17 18:51:32.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16714 mm
17-03-17 18:51:32.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:32.028 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:51:32.028 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 36511, sync = True, waitForSettling = False)
17-03-17 18:51:32.028 -07 000000476 INF: Z Motor: Moving to -0.167137 mm, started at -0.166591 mm, distance = -0.55 um
17-03-17 18:51:32.028 -07 000000476 INF: FPGA: Xmit ZDACW 36511\n [Z Motor]
17-03-17 18:51:32.028 -07 000000541 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:51:32.038 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:32.038 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:51:32.038 -07 000000476 INF: FPGA: 'ZDACW 36511' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:51:32.038 -07 000000424 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:51:32.048 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:32.048 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:32.048 -07 000000541 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:32.048 -07 000000541 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:32.048 -07 000000541 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:51:32.048 -07 000000608 INF: FPGA: Recv ZDACR 36511
17-03-17 18:51:32.058 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:51:32.058 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:32.058 -07 000000476 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 18:51:32.218 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:51:32.218 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:32.218 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:32.228 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:32.228 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:51:32.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:51:32.338 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:51:32.338 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:32.338 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:32.348 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 18:51:32.428 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:51:32.428 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:51:32.468 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:32.468 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:51:32.478 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:32.478 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:32.478 -07 000000541 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 18:51:32.478 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.177 mm/sec
17-03-17 18:51:33.428 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:33.428 -07 000000438 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:51:33.438 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:33.438 -07 000000541 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:33.458 -07 000000541 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:33.458 -07 000000541 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:51:33.458 -07 000000541 INF: Y Motor: Moved to 73.1768 after 1422 ms (table move)
17-03-17 18:51:33.458 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167137 mm (DAC = 36511)
17-03-17 18:51:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.458 -07 000000424 INF: FPGA: Recv ZSGSRD 35309
17-03-17 18:51:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35300
17-03-17 18:51:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.478 -07 000000486 INF: FPGA: Recv ZSGSRD 35302
17-03-17 18:51:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.488 -07 000000462 INF: FPGA: Recv ZSGSRD 35307
17-03-17 18:51:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.498 -07 000000431 INF: FPGA: Recv ZSGSRD 35311
17-03-17 18:51:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35313
17-03-17 18:51:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.518 -07 000000012 INF: FPGA: Recv ZSGSRD 35311
17-03-17 18:51:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.528 -07 000000502 INF: FPGA: Recv ZSGSRD 35311
17-03-17 18:51:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.538 -07 000000608 INF: FPGA: Recv ZSGSRD 35307
17-03-17 18:51:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35300
17-03-17 18:51:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:33.558 -07 000000486 INF: FPGA: Recv ZPIEZORD 31127
17-03-17 18:51:33.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.568 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.2 V.
17-03-17 18:51:33.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35307 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35308 (-166.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35300 (-166.2 uncal um), Max = 35313 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:51:33.568 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35307, posNoise = 6, negNoise = 7
17-03-17 18:51:33.568 -07 000000610 INF: Z Motor: After move to -0.167137, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:33.568 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 107 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:51:33.568 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:33.618 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:51:33.618 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:33.618 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.167143010100289. ----------
17-03-17 18:51:33.618 -07 000000610 INF: Cycle	18	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:33.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36335, sync = True, waitForSettling = True)
17-03-17 18:51:33.618 -07 000000610 INF: Z Motor: Moving to -0.166331 mm, started at -0.167143 mm, distance = 0.81 um
17-03-17 18:51:33.618 -07 000000610 INF: FPGA: Xmit ZDACW 36335\n [Z Motor]
17-03-17 18:51:33.618 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:51:33.628 -07 000000610 INF: FPGA: 'ZDACW 36335' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:51:33.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:33.628 -07 000000431 INF: FPGA: Recv ZDACR 36335
17-03-17 18:51:33.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.788 -07 000000424 INF: FPGA: Recv ZSGSRD 35179
17-03-17 18:51:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.798 -07 000000569 INF: FPGA: Recv ZSGSRD 35186
17-03-17 18:51:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.808 -07 000000438 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:51:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.818 -07 000000551 INF: FPGA: Recv ZSGSRD 35187
17-03-17 18:51:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35180
17-03-17 18:51:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.838 -07 000000431 INF: FPGA: Recv ZSGSRD 35185
17-03-17 18:51:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.848 -07 000000438 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:51:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.858 -07 000000551 INF: FPGA: Recv ZSGSRD 35177
17-03-17 18:51:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.868 -07 000000382 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:51:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:33.878 -07 000000608 INF: FPGA: Recv ZSGSRD 35180
17-03-17 18:51:33.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:33.888 -07 000000012 INF: FPGA: Recv ZPIEZORD 30968
17-03-17 18:51:33.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:33.898 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.3 V.
17-03-17 18:51:33.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35182 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35182 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35177 (-165.4 uncal um), Max = 35187 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:51:33.898 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35182, posNoise = 5, negNoise = 5
17-03-17 18:51:33.898 -07 000000610 INF: Z Motor: After move to -0.166331, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:33.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:51:33.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:33.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:33.898 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:33.898 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:33.898 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:33.898 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:33.898 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:33.898 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:33.898 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:51:33.898 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:33.898 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:51:33.898 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:33.908 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:33.908 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:33.908 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:33.908 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:33.918 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:51:33.918 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:51:33.918 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:51:33.918 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:51:33.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36511 150\n [Camera]
17-03-17 18:51:34.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:34.518 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:34.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:34.518 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:34.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:34.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:34.518 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:34.518 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:34.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:51:34.518 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:34.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:51:34.638 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.012614,
17-03-17 18:51:34.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36511 780
17-03-17 18:51:34.858 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:34.898 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:51:34.898 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:51:34.898 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:34.898 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:51:34.898 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:51:34.898 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:34.898 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:34.898 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:51:34.908 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:34.908 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:51:35.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:35.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:35.048 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:35.048 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:35.048 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 18:51:35.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:35.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:35.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:35.058 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:35.058 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:51:35.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:35.238 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:35.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36511 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:51:35.248 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166808
17-03-17 18:51:35.248 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16681 mm
17-03-17 18:51:35.248 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:35.248 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:51:35.248 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 36439, sync = True, waitForSettling = False)
17-03-17 18:51:35.248 -07 000000476 INF: Z Motor: Moving to -0.166807 mm, started at -0.166340 mm, distance = -0.47 um
17-03-17 18:51:35.248 -07 000000476 INF: FPGA: Xmit ZDACW 36439\n [Z Motor]
17-03-17 18:51:35.248 -07 000000608 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:51:35.248 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:51:35.258 -07 000000476 INF: FPGA: 'ZDACW 36439' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:35.258 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:35.258 -07 000000541 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:51:35.268 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:51:35.348 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:35.348 -07 000000608 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:35.348 -07 000000608 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:35.348 -07 000000608 INF: Y Motor: Moving 1353 steps-33
17-03-17 18:51:35.348 -07 000000433 INF: FPGA: Recv ZDACR 36439
17-03-17 18:51:35.358 -07 000000476 INF: FPGA: 'ZDACR' command took 81 ms to send, 0 ms to get response, and 99 ms overall
17-03-17 18:51:35.358 -07 000000476 INF: Z Motor: MoveAbsStepped took 105 ms (did NOT wait for settling yet))
17-03-17 18:51:35.358 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:35.448 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:51:35.448 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:51:35.448 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:35.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:51:35.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:51:35.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:35.448 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:51:35.448 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:51:35.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:35.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:51:35.728 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:51:35.728 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:51:35.758 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:35.758 -07 000000569 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:51:35.768 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:51:35.768 -07 000000608 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:35.768 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:51:35.768 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.846 mm, average velocity = 2.191 mm/sec
17-03-17 18:51:36.628 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:36.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:36.718 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:36.718 -07 000000415 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:51:36.728 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:36.728 -07 000000608 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:36.738 -07 000000608 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:36.738 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:36.738 -07 000000608 INF: Y Motor: Moved to 74.0088 after 1491 ms (table move)
17-03-17 18:51:36.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166807 mm (DAC = 36439)
17-03-17 18:51:36.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.748 -07 000000415 INF: FPGA: Recv ZSGSRD 35257
17-03-17 18:51:36.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:51:36.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.748 -07 000000433 INF: FPGA: Recv ZSGSRD 35258
17-03-17 18:51:36.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.758 -07 000000623 INF: FPGA: Recv ZSGSRD 35245
17-03-17 18:51:36.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35257
17-03-17 18:51:36.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35253
17-03-17 18:51:36.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.788 -07 000000462 INF: FPGA: Recv ZSGSRD 35256
17-03-17 18:51:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.798 -07 000000502 INF: FPGA: Recv ZSGSRD 35259
17-03-17 18:51:36.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.808 -07 000000424 INF: FPGA: Recv ZSGSRD 35260
17-03-17 18:51:36.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.818 -07 000000431 INF: FPGA: Recv ZSGSRD 35259
17-03-17 18:51:36.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:36.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35248
17-03-17 18:51:36.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:36.838 -07 000000486 INF: FPGA: Recv ZPIEZORD 31073
17-03-17 18:51:36.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.848 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.560 V. Piezo Error = -9.2 V.
17-03-17 18:51:36.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35255 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35257 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35245 (-165.9 uncal um), Max = 35260 (-166.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:51:36.848 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35255, posNoise = 5, negNoise = 10
17-03-17 18:51:36.848 -07 000000610 INF: Z Motor: After move to -0.166807, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:36.848 -07 000000610 INF: Z Motor: Settle wait time = 1493 ms, measure time = 104 ms (allowed 150 ms), total time = 1597 ms
17-03-17 18:51:36.848 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:36.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-17 18:51:36.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:36.898 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.166808951068917. ----------
17-03-17 18:51:36.898 -07 000000610 INF: Cycle	18	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:36.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36263, sync = True, waitForSettling = True)
17-03-17 18:51:36.898 -07 000000610 INF: Z Motor: Moving to -0.166001 mm, started at -0.166809 mm, distance = 0.81 um
17-03-17 18:51:36.898 -07 000000610 INF: FPGA: Xmit ZDACW 36263\n [Z Motor]
17-03-17 18:51:36.898 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:51:36.908 -07 000000610 INF: FPGA: 'ZDACW 36263' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:36.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:36.908 -07 000000424 INF: FPGA: Recv ZDACR 36263
17-03-17 18:51:36.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:36.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.068 -07 000000382 INF: FPGA: Recv ZSGSRD 35139
17-03-17 18:51:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.078 -07 000000486 INF: FPGA: Recv ZSGSRD 35126
17-03-17 18:51:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.088 -07 000000512 INF: FPGA: Recv ZSGSRD 35126
17-03-17 18:51:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.098 -07 000000433 INF: FPGA: Recv ZSGSRD 35136
17-03-17 18:51:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.108 -07 000000462 INF: FPGA: Recv ZSGSRD 35135
17-03-17 18:51:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.118 -07 000000415 INF: FPGA: Recv ZSGSRD 35130
17-03-17 18:51:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.128 -07 000000438 INF: FPGA: Recv ZSGSRD 35129
17-03-17 18:51:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.138 -07 000000512 INF: FPGA: Recv ZSGSRD 35134
17-03-17 18:51:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35136
17-03-17 18:51:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:37.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35121
17-03-17 18:51:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:37.168 -07 000000541 INF: FPGA: Recv ZPIEZORD 30895
17-03-17 18:51:37.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:37.178 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.3 V.
17-03-17 18:51:37.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35131 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35132 (-165.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35121 (-165.1 uncal um), Max = 35139 (-165.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:51:37.178 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35131, posNoise = 8, negNoise = 10
17-03-17 18:51:37.178 -07 000000610 INF: Z Motor: After move to -0.166001, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:37.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:51:37.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:37.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:37.178 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:37.178 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:37.178 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:37.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:37.178 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:37.178 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:37.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:37.178 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:37.178 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:37.178 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:37.188 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:37.188 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:37.188 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:37.188 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:37.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:51:37.198 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:51:37.198 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:51:37.198 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:51:37.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36439 150\n [Camera]
17-03-17 18:51:37.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:37.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:37.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:37.798 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:37.798 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:37.798 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:51:37.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:37.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:37.918 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:37.918 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:37.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:51:37.988 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36439 780
17-03-17 18:51:38.138 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:38.178 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:51:38.178 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:51:38.178 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:38.178 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:38.178 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:51:38.288 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:51:38.288 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:51:38.288 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:38.288 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:38.298 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:51:38.328 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:38.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:38.328 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:38.328 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:38.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:38.338 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:38.338 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:38.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:51:38.338 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:38.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:51:38.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:38.518 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:38.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36439 150' command took 2 ms to send, 1308 ms to get response, and 1319 ms overall
17-03-17 18:51:38.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:51:38.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.166012348763339. ------
17-03-17 18:51:38.528 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:38.528 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17223 mm
17-03-17 18:51:38.528 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:38.528 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:38.528 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:51:38.528 -07 000000623 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:51:38.528 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37624, sync = True, waitForSettling = False)
17-03-17 18:51:38.538 -07 000000012 INF: Z Motor: Moving to -0.172232 mm, started at -0.166012 mm, distance = -6.22 um
17-03-17 18:51:38.538 -07 000000012 INF: FPGA: Xmit ZDACW 37624\n [Z Motor]
17-03-17 18:51:38.538 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:38.538 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:51:38.548 -07 000000012 INF: FPGA: 'ZDACW 37624' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:38.548 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:38.548 -07 000000512 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:51:38.558 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:51:38.558 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:51:38.558 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:38.558 -07 000000623 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:38.558 -07 000000623 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:51:38.568 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:38.568 -07 000000551 INF: FPGA: Recv ZDACR 37624
17-03-17 18:51:38.578 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:38.578 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:38.578 -07 000000012 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:51:38.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:51:38.718 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:51:38.718 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:38.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:51:38.718 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:51:38.718 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:38.728 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:51:38.728 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:51:38.728 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:51:38.738 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:51:38.758 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:51:38.758 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:51:38.948 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:51:38.948 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:51:38.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:38.978 -07 000000486 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:51:38.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:51:38.978 -07 000000623 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:38.978 -07 000000623 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:51:38.978 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:51:39.928 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:39.928 -07 000000512 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:51:39.938 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:39.938 -07 000000623 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:39.948 -07 000000623 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:39.948 -07 000000623 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:39.948 -07 000000623 INF: Y Motor: Moved to 74.8325 after 1415 ms (table move)
17-03-17 18:51:39.948 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172232 mm (DAC = 37624)
17-03-17 18:51:39.948 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:39.958 -07 000000623 INF: FPGA: Recv ZSGSRD 36100
17-03-17 18:51:39.958 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:51:39.958 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:39.958 -07 000000382 INF: FPGA: Recv ZSGSRD 36107
17-03-17 18:51:39.968 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:39.968 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:39.968 -07 000000433 INF: FPGA: Recv ZSGSRD 36104
17-03-17 18:51:39.978 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:39.978 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:39.978 -07 000000512 INF: FPGA: Recv ZSGSRD 36099
17-03-17 18:51:39.988 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:39.998 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:39.998 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.031682,
17-03-17 18:51:39.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36100
17-03-17 18:51:40.008 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:40.028 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.028 -07 000000569 INF: FPGA: Recv ZSGSRD 36102
17-03-17 18:51:40.038 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:40.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.038 -07 000000438 INF: FPGA: Recv ZSGSRD 36104
17-03-17 18:51:40.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.068 -07 000000623 INF: FPGA: Recv ZSGSRD 36105
17-03-17 18:51:40.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:40.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.078 -07 000000476 INF: FPGA: Recv ZSGSRD 36099
17-03-17 18:51:40.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.088 -07 000000551 INF: FPGA: Recv ZSGSRD 36096
17-03-17 18:51:40.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.098 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:40.098 -07 000000502 INF: FPGA: Recv ZPIEZORD 32168
17-03-17 18:51:40.108 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.108 -07 000000462 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.7 V.
17-03-17 18:51:40.108 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36102 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36101 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36096 (-171.3 uncal um), Max = 36107 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:51:40.108 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36102, posNoise = 5, negNoise = 6
17-03-17 18:51:40.108 -07 000000462 INF: Z Motor: After move to -0.172232, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:40.108 -07 000000462 INF: Z Motor: Settle wait time = 1418 ms, measure time = 152 ms (allowed 150 ms), total time = 1570 ms
17-03-17 18:51:40.108 -07 000000462 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 18:51:40.108 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:51:40.108 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:40.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:40.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:40.108 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:40.108 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:40.108 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:51:40.108 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:40.108 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:40.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:51:40.118 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:51:40.118 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:51:40.128 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:51:40.128 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:51:40.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:51:40.178 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:51:40.378 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:51:40.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:51:40.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:51:40.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 18:51:40.418 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:51:40.418 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:51:40.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:51:40.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:51:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:51:40.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:51:40.518 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:40.518 -07 000000476 INF: Autofocus start
17-03-17 18:51:40.518 -07 000000476 INF: MeasureProfile start
17-03-17 18:51:40.518 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:40.528 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:40.528 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:51:40.528 -07 000000476 INF: MeasureProfile done
17-03-17 18:51:40.528 -07 000000476 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:51:40.528 -07 000000476 INF: Autofocus finished
17-03-17 18:51:40.728 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:51:40.728 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:51:40.728 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172250258752989. ----------
17-03-17 18:51:40.728 -07 000000610 INF: Cycle	18	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:40.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36174, sync = True, waitForSettling = True)
17-03-17 18:51:40.738 -07 000000610 INF: Z Motor: Moving to -0.165594 mm, started at -0.172250 mm, distance = 6.66 um
17-03-17 18:51:40.738 -07 000000610 INF: FPGA: Xmit ZDACW 36174\n [Z Motor]
17-03-17 18:51:40.738 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:51:40.748 -07 000000610 INF: FPGA: 'ZDACW 36174' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:40.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:40.748 -07 000000541 INF: FPGA: Recv ZDACR 36174
17-03-17 18:51:40.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.908 -07 000000438 INF: FPGA: Recv ZSGSRD 35067
17-03-17 18:51:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.918 -07 000000512 INF: FPGA: Recv ZSGSRD 35070
17-03-17 18:51:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35065
17-03-17 18:51:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35065
17-03-17 18:51:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.948 -07 000000415 INF: FPGA: Recv ZSGSRD 35066
17-03-17 18:51:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.958 -07 000000608 INF: FPGA: Recv ZSGSRD 35060
17-03-17 18:51:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.968 -07 000000551 INF: FPGA: Recv ZSGSRD 35071
17-03-17 18:51:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35072
17-03-17 18:51:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.988 -07 000000415 INF: FPGA: Recv ZSGSRD 35066
17-03-17 18:51:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:40.998 -07 000000012 INF: FPGA: Recv ZSGSRD 35065
17-03-17 18:51:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:41.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:41.008 -07 000000424 INF: FPGA: Recv ZPIEZORD 30787
17-03-17 18:51:41.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:41.018 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.520 V. Piezo Error = -9.4 V.
17-03-17 18:51:41.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35067 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35066 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35060 (-164.7 uncal um), Max = 35072 (-164.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:51:41.018 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35067, posNoise = 5, negNoise = 7
17-03-17 18:51:41.018 -07 000000610 INF: Z Motor: After move to -0.165594, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:41.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:51:41.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:41.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:41.018 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:41.018 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:41.018 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:41.018 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:41.018 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:41.018 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:41.018 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:41.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:41.018 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:41.018 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:41.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:41.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:41.028 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:41.028 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:41.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:51:41.038 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:51:41.038 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:51:41.038 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:51:41.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36351 150\n [Camera]
17-03-17 18:51:41.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:41.628 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:41.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:41.638 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:41.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:41.638 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:41.638 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:41.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:51:41.638 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:41.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:41.638 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:41.638 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:41.638 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 18:51:41.828 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36351 780
17-03-17 18:51:41.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:42.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:51:42.018 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:51:42.018 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:42.018 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:51:42.018 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:51:42.018 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:42.018 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:42.018 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:51:42.018 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:42.028 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:51:42.168 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-17 18:51:42.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-17 18:51:42.168 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:42.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-17 18:51:42.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-17 18:51:42.288 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:42.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1054871600, 0x0, 391868352) start.
17-03-17 18:51:42.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:42.288 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:42.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:51:42.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:42.358 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:42.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36351 150' command took 2 ms to send, 1307 ms to get response, and 1319 ms overall
17-03-17 18:51:42.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:51:42.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:51:42.668 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:42.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1054871600, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:51:42.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:51:42.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:42.678 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:42.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:51:42.678 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 18:51:42.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:51:42.678 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:51:42.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 18:51:42.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:51:42.758 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:51:42.758 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:51:42.758 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:51:42.768 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 18:51:42.768 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:51:42.768 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:51:43.268 -07 000000569 INF: FPGA: Recv EMIN
17-03-17 18:51:43.268 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 504 ms overall
17-03-17 18:51:43.268 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:51:43.268 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 18:51:43.278 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:43.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:51:43.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165601199186266. ------
17-03-17 18:51:43.278 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14016 mm
17-03-17 18:51:43.278 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:43.278 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:43.288 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:51:43.288 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 18:51:43.288 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30619, sync = True, waitForSettling = False)
17-03-17 18:51:43.288 -07 000000551 INF: Z Motor: Moving to -0.140165 mm, started at -0.165601 mm, distance = 25.44 um
17-03-17 18:51:43.288 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:43.288 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:43.288 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:51:43.288 -07 000000382 INF: FPGA: Recv YRDPOS 153259
17-03-17 18:51:43.298 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:43.298 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:51:43.298 -07 000000431 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:43.298 -07 000000431 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:51:43.298 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:51:43.308 -07 000000551 INF: FPGA: Xmit ZDACW 30619\n [Z Motor]
17-03-17 18:51:43.308 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:51:43.318 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:51:43.318 -07 000000551 INF: FPGA: 'ZDACW 30619' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:43.328 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:43.328 -07 000000512 INF: FPGA: Recv ZDACR 30619
17-03-17 18:51:43.338 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:43.338 -07 000000551 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:51:43.498 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:51:43.498 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 18:51:44.938 -07 000000569 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 18:51:44.938 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 18:51:44.938 -07 000000431 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:51:44.938 -07 000000431 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:51:44.938 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 18:51:45.388 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.988112,
17-03-17 18:51:46.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:46.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:47.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:47.788 -07 000000476 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:51:47.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:47.798 -07 000000431 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:47.818 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:47.818 -07 000000431 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:51:47.818 -07 000000431 INF: Y Motor: Moved to 59.9116 after 4536 ms
17-03-17 18:51:47.828 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140165 mm (DAC = 30619)
17-03-17 18:51:47.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.828 -07 000000551 INF: FPGA: Recv ZSGSRD 31110
17-03-17 18:51:47.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.838 -07 000000551 INF: FPGA: Recv ZSGSRD 31108
17-03-17 18:51:47.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.848 -07 000000012 INF: FPGA: Recv ZSGSRD 31111
17-03-17 18:51:47.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.858 -07 000000438 INF: FPGA: Recv ZSGSRD 31110
17-03-17 18:51:47.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.868 -07 000000512 INF: FPGA: Recv ZSGSRD 31108
17-03-17 18:51:47.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.878 -07 000000541 INF: FPGA: Recv ZSGSRD 31114
17-03-17 18:51:47.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.888 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.888 -07 000000433 INF: FPGA: Recv ZSGSRD 31112
17-03-17 18:51:47.898 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.898 -07 000000438 INF: FPGA: Recv ZSGSRD 31111
17-03-17 18:51:47.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.908 -07 000000382 INF: FPGA: Recv ZSGSRD 31108
17-03-17 18:51:47.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:47.918 -07 000000608 INF: FPGA: Recv ZSGSRD 31112
17-03-17 18:51:47.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.928 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:47.928 -07 000000502 INF: FPGA: Recv ZPIEZORD 26676
17-03-17 18:51:47.938 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:47.938 -07 000000623 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.672 V. Piezo Error = -9.7 V.
17-03-17 18:51:47.938 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31110 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31110 (-139.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31108 (-139.4 uncal um), Max = 31114 (-139.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:51:47.938 -07 000000623 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31110, posNoise = 4, negNoise = 2
17-03-17 18:51:47.938 -07 000000623 INF: Z Motor: After move to -0.140165, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:47.938 -07 000000623 INF: Z Motor: Settle wait time = 4539 ms, measure time = 110 ms (allowed 150 ms), total time = 4649 ms
17-03-17 18:51:47.938 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:47.978 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4691 ms
17-03-17 18:51:47.978 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:47.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:47.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:47.978 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:47.978 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:47.978 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:51:47.978 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:47.988 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:47.988 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:51:48.008 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:51:48.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:51:48.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:51:48.008 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:51:48.028 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:51:48.028 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 18:51:48.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:51:48.068 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:51:48.268 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:51:48.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:51:48.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:51:48.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) start.
17-03-17 18:51:48.308 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:51:48.308 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:51:48.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:51:48.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:51:48.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:48.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:51:48.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:51:48.408 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:48.408 -07 000000569 INF: Image SNR check: start
17-03-17 18:51:48.408 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:48.418 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:48.418 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:51:48.428 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=68.07]
17-03-17 18:51:48.428 -07 000000569 INF: Autofocus start
17-03-17 18:51:48.428 -07 000000569 INF: MeasureProfile start
17-03-17 18:51:48.438 -07 000000569 INF: MeasureProfile done
17-03-17 18:51:48.438 -07 000000569 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:51:48.438 -07 000000569 INF: Autofocus finished
17-03-17 18:51:48.618 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:51:48.618 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:51:48.618 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140180591741318. ----------
17-03-17 18:51:48.618 -07 000000610 INF: Cycle	18	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:48.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29160, sync = True, waitForSettling = True)
17-03-17 18:51:48.628 -07 000000610 INF: Z Motor: Moving to -0.133486 mm, started at -0.140181 mm, distance = 6.69 um
17-03-17 18:51:48.628 -07 000000610 INF: FPGA: Xmit ZDACW 29160\n [Z Motor]
17-03-17 18:51:48.628 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:51:48.638 -07 000000610 INF: FPGA: 'ZDACW 29160' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:51:48.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:48.638 -07 000000382 INF: FPGA: Recv ZDACR 29160
17-03-17 18:51:48.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.798 -07 000000431 INF: FPGA: Recv ZSGSRD 30067
17-03-17 18:51:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.808 -07 000000608 INF: FPGA: Recv ZSGSRD 30073
17-03-17 18:51:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.818 -07 000000433 INF: FPGA: Recv ZSGSRD 30069
17-03-17 18:51:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30064
17-03-17 18:51:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.838 -07 000000431 INF: FPGA: Recv ZSGSRD 30070
17-03-17 18:51:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.848 -07 000000012 INF: FPGA: Recv ZSGSRD 30074
17-03-17 18:51:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.858 -07 000000438 INF: FPGA: Recv ZSGSRD 30068
17-03-17 18:51:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.868 -07 000000415 INF: FPGA: Recv ZSGSRD 30073
17-03-17 18:51:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.878 -07 000000424 INF: FPGA: Recv ZSGSRD 30062
17-03-17 18:51:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:48.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30076
17-03-17 18:51:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:48.898 -07 000000462 INF: FPGA: Recv ZPIEZORD 25566
17-03-17 18:51:48.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:48.908 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.9 V.
17-03-17 18:51:48.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30070 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30062 (-132.7 uncal um), Max = 30076 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:51:48.908 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30070, posNoise = 6, negNoise = 8
17-03-17 18:51:48.908 -07 000000610 INF: Z Motor: After move to -0.133486, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:48.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:51:48.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:48.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:48.908 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:48.908 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:48.908 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:48.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:48.908 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:48.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:48.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:51:48.908 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:51:48.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:51:48.908 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:48.918 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:51:48.918 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:48.928 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:51:48.928 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:51:48.928 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:51:48.928 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:48.938 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:51:48.938 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:48.948 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:51:48.948 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 18:51:48.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29336 150\n [Camera]
17-03-17 18:51:49.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:49.538 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:49.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:49.538 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:49.548 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:49.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:49.548 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:49.548 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:49.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:51:49.548 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:49.548 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:51:49.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29336 780
17-03-17 18:51:49.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:49.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:51:49.918 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:51:49.918 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:49.918 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:49.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:51:49.928 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:51:49.928 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:49.928 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:51:49.928 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:49.928 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:51:50.078 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:50.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:50.078 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:50.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:50.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:50.188 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:50.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 18:51:50.188 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:50.188 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:50.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:51:50.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:50.268 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:50.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29336 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-17 18:51:50.268 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133943
17-03-17 18:51:50.268 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13394 mm
17-03-17 18:51:50.268 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:50.268 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:51:50.268 -07 000000608 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:51:50.268 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:50.268 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29260, sync = True, waitForSettling = False)
17-03-17 18:51:50.268 -07 000000433 INF: Z Motor: Moving to -0.133944 mm, started at -0.133499 mm, distance = -0.44 um
17-03-17 18:51:50.268 -07 000000424 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:51:50.278 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:51:50.278 -07 000000608 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:50.278 -07 000000608 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:50.278 -07 000000608 INF: Y Motor: Moving 1330 steps1
17-03-17 18:51:50.278 -07 000000433 INF: FPGA: Xmit ZDACW 29260\n [Z Motor]
17-03-17 18:51:50.278 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:51:50.288 -07 000000433 INF: FPGA: 'ZDACW 29260' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:51:50.288 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:50.288 -07 000000569 INF: FPGA: Recv ZDACR 29260
17-03-17 18:51:50.298 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:50.298 -07 000000433 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 18:51:50.298 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:50.588 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:51:50.588 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:51:50.588 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:50.588 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:51:50.588 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:51:50.588 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:50.588 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:50.598 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:50.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 18:51:50.598 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:51:50.668 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:51:50.668 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 18:51:50.698 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:50.698 -07 000000433 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:51:50.708 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:50.708 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:50.708 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:51:50.708 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.088 mm/sec
17-03-17 18:51:50.748 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.997626,
17-03-17 18:51:51.628 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:51.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:51.658 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:51.658 -07 000000486 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:51:51.668 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:51.668 -07 000000608 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:51.688 -07 000000608 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:51.688 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:51:51.688 -07 000000608 INF: Y Motor: Moved to 60.7339 after 1414 ms (table move)
17-03-17 18:51:51.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133944 mm (DAC = 29260)
17-03-17 18:51:51.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.688 -07 000000608 INF: FPGA: Recv ZSGSRD 30143
17-03-17 18:51:51.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:51.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.698 -07 000000415 INF: FPGA: Recv ZSGSRD 30130
17-03-17 18:51:51.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.708 -07 000000382 INF: FPGA: Recv ZSGSRD 30138
17-03-17 18:51:51.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.718 -07 000000476 INF: FPGA: Recv ZSGSRD 30146
17-03-17 18:51:51.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.728 -07 000000433 INF: FPGA: Recv ZSGSRD 30143
17-03-17 18:51:51.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.738 -07 000000541 INF: FPGA: Recv ZSGSRD 30146
17-03-17 18:51:51.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.758 -07 000000012 INF: FPGA: Recv ZSGSRD 30147
17-03-17 18:51:51.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:51.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.768 -07 000000623 INF: FPGA: Recv ZSGSRD 30139
17-03-17 18:51:51.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.778 -07 000000608 INF: FPGA: Recv ZSGSRD 30129
17-03-17 18:51:51.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:51.788 -07 000000462 INF: FPGA: Recv ZSGSRD 30141
17-03-17 18:51:51.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:51.798 -07 000000012 INF: FPGA: Recv ZPIEZORD 25722
17-03-17 18:51:51.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.808 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.465 V. Piezo Error = -9.7 V.
17-03-17 18:51:51.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30140 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30142 (-133.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30129 (-133.1 uncal um), Max = 30147 (-133.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:51:51.808 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30140, posNoise = 7, negNoise = 11
17-03-17 18:51:51.808 -07 000000610 INF: Z Motor: After move to -0.133944, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:51.808 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 116 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:51:51.808 -07 000000610 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:51.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:51:51.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:51.848 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.13394910596381. ----------
17-03-17 18:51:51.848 -07 000000610 INF: Cycle	18	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:51.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29083, sync = True, waitForSettling = True)
17-03-17 18:51:51.848 -07 000000610 INF: Z Motor: Moving to -0.133133 mm, started at -0.133949 mm, distance = 0.82 um
17-03-17 18:51:51.848 -07 000000610 INF: FPGA: Xmit ZDACW 29083\n [Z Motor]
17-03-17 18:51:51.848 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:51:51.858 -07 000000610 INF: FPGA: 'ZDACW 29083' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:51.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:51.858 -07 000000569 INF: FPGA: Recv ZDACR 29083
17-03-17 18:51:51.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:51.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.018 -07 000000462 INF: FPGA: Recv ZSGSRD 30014
17-03-17 18:51:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.028 -07 000000415 INF: FPGA: Recv ZSGSRD 30022
17-03-17 18:51:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.038 -07 000000608 INF: FPGA: Recv ZSGSRD 30014
17-03-17 18:51:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30018
17-03-17 18:51:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.068 -07 000000415 INF: FPGA: Recv ZSGSRD 30010
17-03-17 18:51:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.088 -07 000000433 INF: FPGA: Recv ZSGSRD 30019
17-03-17 18:51:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.098 -07 000000486 INF: FPGA: Recv ZSGSRD 30017
17-03-17 18:51:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:52.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.118 -07 000000438 INF: FPGA: Recv ZSGSRD 30018
17-03-17 18:51:52.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:51:52.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.128 -07 000000551 INF: FPGA: Recv ZSGSRD 30018
17-03-17 18:51:52.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:52.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:52.158 -07 000000433 INF: FPGA: Recv ZSGSRD 30008
17-03-17 18:51:52.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:52.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:52.168 -07 000000382 INF: FPGA: Recv ZPIEZORD 25551
17-03-17 18:51:52.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:52.178 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.8 V.
17-03-17 18:51:52.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30016 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30018 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30008 (-132.3 uncal um), Max = 30022 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:51:52.178 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30016, posNoise = 6, negNoise = 8
17-03-17 18:51:52.178 -07 000000610 INF: Z Motor: After move to -0.133133, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:52.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 18:51:52.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:52.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:52.178 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:52.178 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:52.178 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:52.178 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:52.178 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:52.178 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:52.178 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:52.178 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:52.178 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:51:52.178 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:52.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:52.188 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:52.188 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:51:52.188 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:52.198 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:51:52.198 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:51:52.198 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:51:52.198 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:51:52.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29260 150\n [Camera]
17-03-17 18:51:52.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:51:52.798 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:52.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:52.798 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:52.798 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:52.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:51:52.798 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:52.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:52.798 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:52.798 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:52.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) start.
17-03-17 18:51:52.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29260 780
17-03-17 18:51:53.138 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:53.198 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:51:53.198 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:51:53.198 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:53.198 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:53.198 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:51:53.198 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:51:53.198 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:51:53.198 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:53.208 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:53.208 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:51:53.328 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:53.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:53.328 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:53.328 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:53.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1090293864, 0x0, 391868352) start.
17-03-17 18:51:53.338 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:53.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:53.338 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:53.338 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:53.338 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1125716128, 0x0, 418435064) start.
17-03-17 18:51:53.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:53.518 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:53.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29260 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-17 18:51:53.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:51:53.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133152503658232. ------
17-03-17 18:51:53.528 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:53.528 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13987 mm
17-03-17 18:51:53.528 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:53.528 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:51:53.528 -07 000000462 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:51:53.528 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30554, sync = True, waitForSettling = False)
17-03-17 18:51:53.528 -07 000000502 INF: Z Motor: Moving to -0.139867 mm, started at -0.133153 mm, distance = -6.71 um
17-03-17 18:51:53.528 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:53.538 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:53.538 -07 000000502 INF: FPGA: Xmit ZDACW 30554\n [Z Motor]
17-03-17 18:51:53.538 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:51:53.548 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:53.548 -07 000000502 INF: FPGA: 'ZDACW 30554' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:51:53.548 -07 000000512 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:51:53.558 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:51:53.558 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:51:53.558 -07 000000462 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:53.558 -07 000000462 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:53.558 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:51:53.568 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:53.568 -07 000000608 INF: FPGA: Recv ZDACR 30554
17-03-17 18:51:53.578 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:53.578 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:51:53.578 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:51:53.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1090293864, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:51:53.738 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:51:53.738 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:53.738 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1125716128, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:51:53.738 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:51:53.738 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:53.738 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:53.738 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:51:53.738 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:53.748 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:51:53.758 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:51:53.758 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:51:53.948 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:51:53.948 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 397 ms overall
17-03-17 18:51:53.988 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:53.988 -07 000000608 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:51:53.998 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:53.998 -07 000000462 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:53.998 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:51:53.998 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.102 mm/sec
17-03-17 18:51:54.948 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:54.948 -07 000000433 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:51:54.958 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:54.958 -07 000000462 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:54.978 -07 000000462 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:54.978 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:54.978 -07 000000462 INF: Y Motor: Moved to 61.5645 after 1443 ms (table move)
17-03-17 18:51:54.978 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139867 mm (DAC = 30554)
17-03-17 18:51:54.978 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:54.978 -07 000000476 INF: FPGA: Recv ZSGSRD 31068
17-03-17 18:51:54.988 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:51:54.988 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:54.988 -07 000000424 INF: FPGA: Recv ZSGSRD 31056
17-03-17 18:51:54.998 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:54.998 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:54.998 -07 000000438 INF: FPGA: Recv ZSGSRD 31071
17-03-17 18:51:55.008 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.008 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.008 -07 000000382 INF: FPGA: Recv ZSGSRD 31074
17-03-17 18:51:55.018 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.018 -07 000000431 INF: FPGA: Recv ZSGSRD 31059
17-03-17 18:51:55.028 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.028 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.028 -07 000000424 INF: FPGA: Recv ZSGSRD 31060
17-03-17 18:51:55.038 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.038 -07 000000438 INF: FPGA: Recv ZSGSRD 31057
17-03-17 18:51:55.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.048 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.048 -07 000000623 INF: FPGA: Recv ZSGSRD 31059
17-03-17 18:51:55.058 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.058 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.058 -07 000000502 INF: FPGA: Recv ZSGSRD 31063
17-03-17 18:51:55.068 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.068 -07 000000541 INF: FPGA: Recv ZSGSRD 31063
17-03-17 18:51:55.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.078 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:55.078 -07 000000433 INF: FPGA: Recv ZPIEZORD 26924
17-03-17 18:51:55.088 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.088 -07 000000415 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.662 V. Piezo Error = -9.1 V.
17-03-17 18:51:55.088 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31063 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31062 (-139.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31056 (-139.0 uncal um), Max = 31074 (-139.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:51:55.088 -07 000000415 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31063, posNoise = 11, negNoise = 7
17-03-17 18:51:55.088 -07 000000415 INF: Z Motor: After move to -0.139867, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:55.088 -07 000000415 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:51:55.088 -07 000000415 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:55.138 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:51:55.138 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:55.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:55.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:55.138 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:55.138 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:55.138 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:51:55.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:55.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:51:55.138 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:51:55.148 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:55.148 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:51:55.158 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:51:55.158 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:51:55.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:51:55.208 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:51:55.398 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:51:55.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:51:55.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:51:55.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) start.
17-03-17 18:51:55.438 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:51:55.438 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:51:55.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:51:55.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:51:55.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:55.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:51:55.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:51:55.548 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:51:55.548 -07 000000502 INF: Autofocus start
17-03-17 18:51:55.548 -07 000000502 INF: MeasureProfile start
17-03-17 18:51:55.548 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:51:55.558 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:55.558 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:51:55.558 -07 000000502 INF: MeasureProfile done
17-03-17 18:51:55.558 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:51:55.558 -07 000000502 INF: Autofocus finished
17-03-17 18:51:55.758 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:51:55.758 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:51:55.758 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139878653770656. ----------
17-03-17 18:51:55.758 -07 000000610 INF: Cycle	18	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:55.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29049, sync = True, waitForSettling = True)
17-03-17 18:51:55.768 -07 000000610 INF: Z Motor: Moving to -0.132978 mm, started at -0.139879 mm, distance = 6.90 um
17-03-17 18:51:55.768 -07 000000610 INF: FPGA: Xmit ZDACW 29049\n [Z Motor]
17-03-17 18:51:55.768 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:51:55.778 -07 000000610 INF: FPGA: 'ZDACW 29049' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:51:55.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:55.778 -07 000000551 INF: FPGA: Recv ZDACR 29049
17-03-17 18:51:55.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:55.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.938 -07 000000512 INF: FPGA: Recv ZSGSRD 29991
17-03-17 18:51:55.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:55.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.948 -07 000000608 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:51:55.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29991
17-03-17 18:51:55.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.968 -07 000000476 INF: FPGA: Recv ZSGSRD 29984
17-03-17 18:51:55.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.978 -07 000000541 INF: FPGA: Recv ZSGSRD 29988
17-03-17 18:51:55.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.988 -07 000000608 INF: FPGA: Recv ZSGSRD 29992
17-03-17 18:51:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:55.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:55.998 -07 000000415 INF: FPGA: Recv ZSGSRD 29985
17-03-17 18:51:56.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:56.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:56.008 -07 000000424 INF: FPGA: Recv ZSGSRD 29995
17-03-17 18:51:56.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:56.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:56.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29988
17-03-17 18:51:56.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:56.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29990
17-03-17 18:51:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:56.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:56.038 -07 000000431 INF: FPGA: Recv ZPIEZORD 25543
17-03-17 18:51:56.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:56.048 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.8 V.
17-03-17 18:51:56.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29989 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29989 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29984 (-132.2 uncal um), Max = 29995 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:51:56.048 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29989, posNoise = 6, negNoise = 5
17-03-17 18:51:56.048 -07 000000610 INF: Z Motor: After move to -0.132978, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:56.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:51:56.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:56.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:56.048 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:56.048 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:56.048 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:56.048 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:56.048 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:56.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:56.048 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:56.048 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:56.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:51:56.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:56.058 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:56.058 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:56.058 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:51:56.058 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:56.068 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:51:56.068 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:51:56.068 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:51:56.068 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:51:56.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29226 150\n [Camera]
17-03-17 18:51:56.108 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.971733,
17-03-17 18:51:56.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:51:56.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:51:56.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:51:56.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:56.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:56.668 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:56.668 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:56.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:51:56.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:56.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:56.678 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:56.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:56.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:51:56.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29226 780
17-03-17 18:51:57.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:51:57.048 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:51:57.048 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:51:57.048 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:57.058 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:57.058 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:51:57.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:51:57.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:51:57.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:57.168 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:57.178 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 18:51:57.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:51:57.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:51:57.198 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:57.208 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:51:57.208 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:57.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:51:57.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:51:57.208 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:57.208 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:57.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 18:51:57.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:51:57.398 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:51:57.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29226 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:51:57.398 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133367
17-03-17 18:51:57.398 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13337 mm
17-03-17 18:51:57.398 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:51:57.398 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:51:57.398 -07 000000608 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:51:57.398 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29134, sync = True, waitForSettling = False)
17-03-17 18:51:57.398 -07 000000462 INF: Z Motor: Moving to -0.133367 mm, started at -0.132979 mm, distance = -0.39 um
17-03-17 18:51:57.398 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:57.398 -07 000000382 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:51:57.408 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:51:57.408 -07 000000608 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:57.408 -07 000000462 INF: FPGA: Xmit ZDACW 29134\n [Z Motor]
17-03-17 18:51:57.408 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:51:57.408 -07 000000608 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:51:57.408 -07 000000608 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:51:57.418 -07 000000462 INF: FPGA: 'ZDACW 29134' command took 2 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:51:57.418 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:57.418 -07 000000433 INF: FPGA: Recv ZDACR 29134
17-03-17 18:51:57.428 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:57.428 -07 000000462 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 18:51:57.428 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:51:57.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:51:57.588 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:51:57.588 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:57.588 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:51:57.588 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:51:57.588 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:51:57.588 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:57.598 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:51:57.598 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:51:57.598 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:51:57.798 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:51:57.798 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:51:57.838 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:57.838 -07 000000431 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:51:57.848 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:51:57.848 -07 000000608 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:57.848 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:51:57.848 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.127 mm/sec
17-03-17 18:51:58.798 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:51:58.798 -07 000000502 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:51:58.808 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:51:58.808 -07 000000608 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:51:58.818 -07 000000608 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:51:58.818 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:51:58.818 -07 000000608 INF: Y Motor: Moved to 62.3960 after 1424 ms (table move)
17-03-17 18:51:58.828 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133367 mm (DAC = 29134)
17-03-17 18:51:58.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.828 -07 000000431 INF: FPGA: Recv ZSGSRD 30048
17-03-17 18:51:58.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:51:58.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.838 -07 000000433 INF: FPGA: Recv ZSGSRD 30049
17-03-17 18:51:58.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.848 -07 000000382 INF: FPGA: Recv ZSGSRD 30051
17-03-17 18:51:58.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.858 -07 000000486 INF: FPGA: Recv ZSGSRD 30052
17-03-17 18:51:58.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.868 -07 000000569 INF: FPGA: Recv ZSGSRD 30051
17-03-17 18:51:58.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.878 -07 000000438 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:51:58.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.888 -07 000000462 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:51:58.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.898 -07 000000486 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:51:58.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.908 -07 000000502 INF: FPGA: Recv ZSGSRD 30052
17-03-17 18:51:58.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:58.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30056
17-03-17 18:51:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:58.928 -07 000000551 INF: FPGA: Recv ZPIEZORD 25671
17-03-17 18:51:58.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.938 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.6 V.
17-03-17 18:51:58.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30050 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30050 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30046 (-132.6 uncal um), Max = 30056 (-132.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:51:58.938 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30050, posNoise = 6, negNoise = 4
17-03-17 18:51:58.938 -07 000000610 INF: Z Motor: After move to -0.133367, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:58.938 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 111 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:51:58.938 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:51:58.978 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:51:58.978 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:51:58.978 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.133370926871052. ----------
17-03-17 18:51:58.978 -07 000000610 INF: Cycle	18	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:51:58.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28957, sync = True, waitForSettling = True)
17-03-17 18:51:58.978 -07 000000610 INF: Z Motor: Moving to -0.132557 mm, started at -0.133371 mm, distance = 0.81 um
17-03-17 18:51:58.978 -07 000000610 INF: FPGA: Xmit ZDACW 28957\n [Z Motor]
17-03-17 18:51:58.978 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:51:58.988 -07 000000610 INF: FPGA: 'ZDACW 28957' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:51:58.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:51:58.988 -07 000000486 INF: FPGA: Recv ZDACR 28957
17-03-17 18:51:58.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:58.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:51:59.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.148 -07 000000382 INF: FPGA: Recv ZSGSRD 29928
17-03-17 18:51:59.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.158 -07 000000551 INF: FPGA: Recv ZSGSRD 29928
17-03-17 18:51:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.168 -07 000000438 INF: FPGA: Recv ZSGSRD 29923
17-03-17 18:51:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.178 -07 000000608 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:51:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29926
17-03-17 18:51:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.198 -07 000000424 INF: FPGA: Recv ZSGSRD 29926
17-03-17 18:51:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.208 -07 000000512 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:51:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.218 -07 000000431 INF: FPGA: Recv ZSGSRD 29922
17-03-17 18:51:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.228 -07 000000551 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:51:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:51:59.238 -07 000000623 INF: FPGA: Recv ZSGSRD 29927
17-03-17 18:51:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:51:59.248 -07 000000512 INF: FPGA: Recv ZPIEZORD 25504
17-03-17 18:51:59.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:51:59.258 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.7 V.
17-03-17 18:51:59.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29924 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29926 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29919 (-131.7 uncal um), Max = 29928 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:51:59.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29924, posNoise = 4, negNoise = 5
17-03-17 18:51:59.258 -07 000000610 INF: Z Motor: After move to -0.132557, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:51:59.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:51:59.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:51:59.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:51:59.258 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:51:59.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:51:59.258 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:51:59.258 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:51:59.258 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:51:59.258 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:51:59.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:51:59.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:51:59.258 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:51:59.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:51:59.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:51:59.258 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:51:59.268 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:51:59.268 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:51:59.268 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:51:59.268 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:51:59.268 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:51:59.268 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:51:59.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29134 150\n [Camera]
17-03-17 18:51:59.478 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:51:59.868 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:51:59.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:51:59.868 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:51:59.868 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:51:59.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:51:59.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:51:59.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:51:59.878 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:51:59.878 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:51:59.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:52:00.058 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29134 780
17-03-17 18:52:00.208 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:00.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:52:00.258 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:52:00.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:00.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:00.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:52:00.258 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:52:00.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:00.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:00.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:52:00.268 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:52:00.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:00.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:00.408 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:00.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:00.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:00.518 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:00.518 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:00.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 18:52:00.528 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:00.528 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:52:00.598 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:00.598 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:00.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29134 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-17 18:52:00.598 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133307
17-03-17 18:52:00.598 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13331 mm
17-03-17 18:52:00.598 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:00.598 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:52:00.598 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:52:00.598 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:00.598 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29121, sync = True, waitForSettling = False)
17-03-17 18:52:00.598 -07 000000569 INF: Z Motor: Moving to -0.133307 mm, started at -0.132561 mm, distance = -0.75 um
17-03-17 18:52:00.598 -07 000000551 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:52:00.608 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:52:00.608 -07 000000462 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:00.608 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:00.608 -07 000000462 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:52:00.608 -07 000000569 INF: FPGA: Xmit ZDACW 29121\n [Z Motor]
17-03-17 18:52:00.608 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:52:00.618 -07 000000569 INF: FPGA: 'ZDACW 29121' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:52:00.618 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:00.618 -07 000000012 INF: FPGA: Recv ZDACR 29121
17-03-17 18:52:00.628 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:00.628 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:00.628 -07 000000569 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 18:52:00.908 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:52:00.908 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:52:00.908 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:00.908 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:52:00.908 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:52:00.908 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:00.908 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:00.918 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:00.918 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 18:52:00.918 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:52:00.998 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:52:00.998 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:52:01.038 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:01.038 -07 000000608 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:52:01.048 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:01.048 -07 000000462 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:01.048 -07 000000462 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:52:01.048 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 18:52:01.468 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.977204,
17-03-17 18:52:01.628 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:01.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:01.998 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:01.998 -07 000000415 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:52:02.008 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:02.008 -07 000000462 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:02.028 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:02.028 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:02.028 -07 000000462 INF: Y Motor: Moved to 63.2251 after 1425 ms (table move)
17-03-17 18:52:02.028 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133307 mm (DAC = 29121)
17-03-17 18:52:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.028 -07 000000551 INF: FPGA: Recv ZSGSRD 30042
17-03-17 18:52:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.038 -07 000000415 INF: FPGA: Recv ZSGSRD 30032
17-03-17 18:52:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.048 -07 000000486 INF: FPGA: Recv ZSGSRD 30033
17-03-17 18:52:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.058 -07 000000476 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:52:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.068 -07 000000424 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:52:02.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30045
17-03-17 18:52:02.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.088 -07 000000431 INF: FPGA: Recv ZSGSRD 30042
17-03-17 18:52:02.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.098 -07 000000433 INF: FPGA: Recv ZSGSRD 30039
17-03-17 18:52:02.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.108 -07 000000415 INF: FPGA: Recv ZSGSRD 30040
17-03-17 18:52:02.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.118 -07 000000431 INF: FPGA: Recv ZSGSRD 30036
17-03-17 18:52:02.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:02.128 -07 000000433 INF: FPGA: Recv ZPIEZORD 25660
17-03-17 18:52:02.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.138 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.6 V.
17-03-17 18:52:02.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30040 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30041 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30032 (-132.5 uncal um), Max = 30046 (-132.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:52:02.138 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30040, posNoise = 6, negNoise = 8
17-03-17 18:52:02.138 -07 000000610 INF: Z Motor: After move to -0.133307, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:02.138 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:52:02.138 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:02.188 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:52:02.188 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:02.188 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.133306684749634. ----------
17-03-17 18:52:02.188 -07 000000610 INF: Cycle	18	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:02.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28944, sync = True, waitForSettling = True)
17-03-17 18:52:02.188 -07 000000610 INF: Z Motor: Moving to -0.132497 mm, started at -0.133307 mm, distance = 0.81 um
17-03-17 18:52:02.188 -07 000000610 INF: FPGA: Xmit ZDACW 28944\n [Z Motor]
17-03-17 18:52:02.188 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:52:02.198 -07 000000610 INF: FPGA: 'ZDACW 28944' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:02.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:02.198 -07 000000623 INF: FPGA: Recv ZDACR 28944
17-03-17 18:52:02.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:02.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.358 -07 000000541 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:52:02.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:02.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.368 -07 000000433 INF: FPGA: Recv ZSGSRD 29917
17-03-17 18:52:02.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29915
17-03-17 18:52:02.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:52:02.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.398 -07 000000541 INF: FPGA: Recv ZSGSRD 29922
17-03-17 18:52:02.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.408 -07 000000415 INF: FPGA: Recv ZSGSRD 29912
17-03-17 18:52:02.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.418 -07 000000502 INF: FPGA: Recv ZSGSRD 29912
17-03-17 18:52:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.428 -07 000000476 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:52:02.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.438 -07 000000382 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:52:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:02.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29915
17-03-17 18:52:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:02.458 -07 000000551 INF: FPGA: Recv ZPIEZORD 25489
17-03-17 18:52:02.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:02.468 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.7 V.
17-03-17 18:52:02.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29916 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29915 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29912 (-131.7 uncal um), Max = 29922 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:52:02.468 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29916, posNoise = 6, negNoise = 4
17-03-17 18:52:02.468 -07 000000610 INF: Z Motor: After move to -0.132497, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:02.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:52:02.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:02.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:02.468 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:02.468 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:02.468 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:02.468 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:02.468 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:02.468 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:02.468 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:02.468 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:02.468 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:02.468 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:02.478 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:52:02.478 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:02.478 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:02.478 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:02.488 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:52:02.488 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:02.488 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:52:02.488 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:02.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29121 150\n [Camera]
17-03-17 18:52:02.688 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:03.088 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:03.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:03.088 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:03.088 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:03.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:52:03.088 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:03.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:03.088 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:03.088 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:03.088 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 18:52:03.278 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29121 782
17-03-17 18:52:03.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:03.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:52:03.478 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:52:03.478 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:03.478 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:03.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:52:03.478 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:52:03.478 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:03.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:03.478 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:52:03.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:52:03.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:03.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:03.618 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:03.618 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:03.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1057230896, 0x0, 391868352) start.
17-03-17 18:52:03.628 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:03.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:03.628 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:03.758 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:03.758 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:52:03.808 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:52:03.808 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:03.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29121 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:52:03.818 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.133011
17-03-17 18:52:03.818 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13301 mm
17-03-17 18:52:03.818 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:03.818 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:52:03.818 -07 000000431 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:52:03.818 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:03.818 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29056, sync = True, waitForSettling = False)
17-03-17 18:52:03.818 -07 000000462 INF: Z Motor: Moving to -0.133010 mm, started at -0.132510 mm, distance = -0.50 um
17-03-17 18:52:03.818 -07 000000608 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:52:03.828 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:52:03.828 -07 000000431 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:03.828 -07 000000431 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:03.828 -07 000000431 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:52:03.828 -07 000000462 INF: FPGA: Xmit ZDACW 29056\n [Z Motor]
17-03-17 18:52:03.828 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:52:03.838 -07 000000462 INF: FPGA: 'ZDACW 29056' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:52:03.838 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:03.838 -07 000000438 INF: FPGA: Recv ZDACR 29056
17-03-17 18:52:03.848 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:03.848 -07 000000462 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 18:52:03.848 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:04.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1057230896, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:52:04.008 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:52:04.008 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:04.008 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:04.008 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:52:04.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:52:04.138 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:52:04.138 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:04.138 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:04.148 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-17 18:52:04.218 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:52:04.218 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 18:52:04.258 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:04.258 -07 000000012 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:52:04.268 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:04.268 -07 000000431 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:04.268 -07 000000431 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:52:04.268 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 18:52:05.218 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:05.218 -07 000000433 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:52:05.228 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.228 -07 000000431 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:05.238 -07 000000431 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:05.238 -07 000000431 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:05.238 -07 000000431 INF: Y Motor: Moved to 64.0576 after 1421 ms (table move)
17-03-17 18:52:05.238 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133010 mm (DAC = 29056)
17-03-17 18:52:05.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29999
17-03-17 18:52:05.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:52:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.248 -07 000000476 INF: FPGA: Recv ZSGSRD 29997
17-03-17 18:52:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:05.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.258 -07 000000569 INF: FPGA: Recv ZSGSRD 30004
17-03-17 18:52:05.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:05.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.268 -07 000000502 INF: FPGA: Recv ZSGSRD 29995
17-03-17 18:52:05.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.278 -07 000000438 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:52:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.288 -07 000000012 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:52:05.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.298 -07 000000431 INF: FPGA: Recv ZSGSRD 29989
17-03-17 18:52:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.308 -07 000000502 INF: FPGA: Recv ZSGSRD 29994
17-03-17 18:52:05.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.318 -07 000000512 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:52:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.328 -07 000000433 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:52:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:05.338 -07 000000462 INF: FPGA: Recv ZPIEZORD 25642
17-03-17 18:52:05.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.348 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.6 V.
17-03-17 18:52:05.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29996 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29996 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29989 (-132.2 uncal um), Max = 30004 (-132.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:05.348 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29996, posNoise = 8, negNoise = 7
17-03-17 18:52:05.348 -07 000000610 INF: Z Motor: After move to -0.133010, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:05.348 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 103 ms (allowed 150 ms), total time = 1526 ms
17-03-17 18:52:05.348 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:05.398 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:52:05.398 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:05.398 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.133024019415397. ----------
17-03-17 18:52:05.398 -07 000000610 INF: Cycle	18	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:05.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28879, sync = True, waitForSettling = True)
17-03-17 18:52:05.398 -07 000000610 INF: Z Motor: Moving to -0.132200 mm, started at -0.133024 mm, distance = 0.82 um
17-03-17 18:52:05.398 -07 000000610 INF: FPGA: Xmit ZDACW 28879\n [Z Motor]
17-03-17 18:52:05.398 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:52:05.408 -07 000000610 INF: FPGA: 'ZDACW 28879' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:52:05.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:05.408 -07 000000551 INF: FPGA: Recv ZDACR 28879
17-03-17 18:52:05.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.568 -07 000000415 INF: FPGA: Recv ZSGSRD 29864
17-03-17 18:52:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:05.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29872
17-03-17 18:52:05.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.588 -07 000000541 INF: FPGA: Recv ZSGSRD 29873
17-03-17 18:52:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.598 -07 000000551 INF: FPGA: Recv ZSGSRD 29865
17-03-17 18:52:05.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.608 -07 000000608 INF: FPGA: Recv ZSGSRD 29861
17-03-17 18:52:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.618 -07 000000415 INF: FPGA: Recv ZSGSRD 29868
17-03-17 18:52:05.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.628 -07 000000438 INF: FPGA: Recv ZSGSRD 29870
17-03-17 18:52:05.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.638 -07 000000551 INF: FPGA: Recv ZSGSRD 29873
17-03-17 18:52:05.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29863
17-03-17 18:52:05.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:05.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29874
17-03-17 18:52:05.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:05.668 -07 000000462 INF: FPGA: Recv ZPIEZORD 25458
17-03-17 18:52:05.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:05.678 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.7 V.
17-03-17 18:52:05.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29868 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29869 (-131.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29861 (-131.4 uncal um), Max = 29874 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:05.678 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29868, posNoise = 6, negNoise = 7
17-03-17 18:52:05.678 -07 000000610 INF: Z Motor: After move to -0.132200, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:05.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:52:05.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:05.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:05.678 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:05.678 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:05.678 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:05.678 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:05.678 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:05.678 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:05.678 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:05.678 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:05.678 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:05.678 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:05.688 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:52:05.688 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:05.688 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:52:05.688 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:05.698 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:52:05.698 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:52:05.698 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:52:05.698 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:52:05.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29056 150\n [Camera]
17-03-17 18:52:05.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:06.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:06.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:06.298 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:06.298 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:06.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:06.298 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:06.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:06.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:52:06.308 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:06.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:52:06.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29056 780
17-03-17 18:52:06.628 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:06.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:06.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:06.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:52:06.678 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:52:06.678 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:06.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:52:06.678 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:52:06.678 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:06.688 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:06.688 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:52:06.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:06.688 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:52:06.828 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.985358,
17-03-17 18:52:06.828 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:06.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:06.828 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:06.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:06.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 18:52:06.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:06.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:06.838 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:06.838 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:06.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1092653160, 0x0, 418435064) start.
17-03-17 18:52:07.018 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:07.028 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:07.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29056 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-17 18:52:07.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:52:07.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132201720261251. ------
17-03-17 18:52:07.028 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:07.028 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13878 mm
17-03-17 18:52:07.028 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:07.028 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:07.038 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:52:07.038 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:52:07.038 -07 000000431 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:52:07.038 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:07.038 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30317, sync = True, waitForSettling = False)
17-03-17 18:52:07.038 -07 000000012 INF: Z Motor: Moving to -0.138782 mm, started at -0.132202 mm, distance = -6.58 um
17-03-17 18:52:07.038 -07 000000462 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:52:07.048 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:07.048 -07 000000431 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:07.048 -07 000000431 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:07.048 -07 000000431 INF: Y Motor: Moving 1336 steps-10
17-03-17 18:52:07.048 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:52:07.058 -07 000000012 INF: FPGA: Xmit ZDACW 30317\n [Z Motor]
17-03-17 18:52:07.058 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:52:07.068 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:07.068 -07 000000012 INF: FPGA: 'ZDACW 30317' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:52:07.078 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:07.078 -07 000000415 INF: FPGA: Recv ZDACR 30317
17-03-17 18:52:07.088 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:52:07.088 -07 000000012 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:52:07.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:52:07.218 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1092653160, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:52:07.218 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:52:07.218 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:07.218 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:52:07.218 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:07.228 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:07.228 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:52:07.228 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:07.238 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:52:07.248 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:52:07.248 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:52:07.438 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:52:07.438 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:52:07.468 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:07.478 -07 000000541 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:52:07.478 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:52:07.478 -07 000000431 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:07.478 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:52:07.478 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-17 18:52:08.428 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:08.428 -07 000000541 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:52:08.438 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:08.438 -07 000000431 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:08.458 -07 000000431 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:08.458 -07 000000431 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:52:08.458 -07 000000431 INF: Y Motor: Moved to 64.8799 after 1420 ms (table move)
17-03-17 18:52:08.458 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138782 mm (DAC = 30317)
17-03-17 18:52:08.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.458 -07 000000623 INF: FPGA: Recv ZSGSRD 30894
17-03-17 18:52:08.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:08.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.468 -07 000000424 INF: FPGA: Recv ZSGSRD 30891
17-03-17 18:52:08.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.478 -07 000000541 INF: FPGA: Recv ZSGSRD 30888
17-03-17 18:52:08.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.488 -07 000000415 INF: FPGA: Recv ZSGSRD 30884
17-03-17 18:52:08.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.498 -07 000000462 INF: FPGA: Recv ZSGSRD 30896
17-03-17 18:52:08.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.508 -07 000000382 INF: FPGA: Recv ZSGSRD 30897
17-03-17 18:52:08.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.518 -07 000000438 INF: FPGA: Recv ZSGSRD 30894
17-03-17 18:52:08.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30896
17-03-17 18:52:08.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:08.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.538 -07 000000512 INF: FPGA: Recv ZSGSRD 30888
17-03-17 18:52:08.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:08.548 -07 000000502 INF: FPGA: Recv ZSGSRD 30890
17-03-17 18:52:08.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.558 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:08.558 -07 000000486 INF: FPGA: Recv ZPIEZORD 26790
17-03-17 18:52:08.568 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:08.568 -07 000000433 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -9.0 V.
17-03-17 18:52:08.568 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30892 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30892 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30884 (-137.9 uncal um), Max = 30897 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:52:08.568 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30892, posNoise = 5, negNoise = 8
17-03-17 18:52:08.568 -07 000000433 INF: Z Motor: After move to -0.138782, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:08.568 -07 000000433 INF: Z Motor: Settle wait time = 1422 ms, measure time = 108 ms (allowed 150 ms), total time = 1530 ms
17-03-17 18:52:08.568 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:08.618 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 18:52:08.618 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:08.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:08.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:08.618 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:08.618 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:08.618 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:52:08.618 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:08.618 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:52:08.618 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:52:08.628 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:08.628 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:52:08.638 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:52:08.638 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:52:08.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:52:08.688 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:52:08.888 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:52:08.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:52:08.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:52:08.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:52:08.928 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:52:08.928 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:52:08.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:52:09.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:52:09.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:09.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:52:09.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:52:09.028 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:09.028 -07 000000424 INF: Autofocus start
17-03-17 18:52:09.028 -07 000000424 INF: MeasureProfile start
17-03-17 18:52:09.028 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:09.038 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:09.038 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:52:09.038 -07 000000424 INF: MeasureProfile done
17-03-17 18:52:09.038 -07 000000424 INF: X=-5  Z correction [um]=-0.02774208
17-03-17 18:52:09.038 -07 000000424 INF: Autofocus finished
17-03-17 18:52:09.238 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:52:09.238 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:52:09.238 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138780113494414. ----------
17-03-17 18:52:09.238 -07 000000610 INF: Cycle	18	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:09.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28824, sync = True, waitForSettling = True)
17-03-17 18:52:09.248 -07 000000610 INF: Z Motor: Moving to -0.131948 mm, started at -0.138780 mm, distance = 6.83 um
17-03-17 18:52:09.248 -07 000000610 INF: FPGA: Xmit ZDACW 28824\n [Z Motor]
17-03-17 18:52:09.248 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:52:09.258 -07 000000610 INF: FPGA: 'ZDACW 28824' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:09.258 -07 000000382 INF: FPGA: Recv ZDACR 28824
17-03-17 18:52:09.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.418 -07 000000569 INF: FPGA: Recv ZSGSRD 29831
17-03-17 18:52:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29830
17-03-17 18:52:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.438 -07 000000424 INF: FPGA: Recv ZSGSRD 29826
17-03-17 18:52:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29828
17-03-17 18:52:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.458 -07 000000433 INF: FPGA: Recv ZSGSRD 29834
17-03-17 18:52:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29830
17-03-17 18:52:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.478 -07 000000623 INF: FPGA: Recv ZSGSRD 29825
17-03-17 18:52:09.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.488 -07 000000438 INF: FPGA: Recv ZSGSRD 29829
17-03-17 18:52:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.498 -07 000000431 INF: FPGA: Recv ZSGSRD 29828
17-03-17 18:52:09.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:09.508 -07 000000541 INF: FPGA: Recv ZSGSRD 29829
17-03-17 18:52:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:09.518 -07 000000382 INF: FPGA: Recv ZPIEZORD 25398
17-03-17 18:52:09.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:09.528 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.7 V.
17-03-17 18:52:09.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29829 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29829 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29825 (-131.1 uncal um), Max = 29834 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:52:09.528 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29829, posNoise = 5, negNoise = 4
17-03-17 18:52:09.528 -07 000000610 INF: Z Motor: After move to -0.131948, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:09.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:52:09.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:09.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:09.528 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:09.528 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:09.528 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:09.528 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:09.528 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:09.528 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:09.528 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:09.528 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:52:09.528 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:09.528 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:09.538 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:09.538 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:09.538 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:09.538 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:09.548 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:52:09.548 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:52:09.548 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:52:09.548 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:52:09.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29000 150\n [Camera]
17-03-17 18:52:09.748 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:10.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:10.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:10.148 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:10.148 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:10.148 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1128075424, 0x0, 391868352) start.
17-03-17 18:52:10.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:10.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:10.148 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:10.148 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:10.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:52:10.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29000 780
17-03-17 18:52:10.488 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:10.528 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1128075424, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:52:10.528 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:52:10.528 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:10.528 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:52:10.528 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:52:10.528 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:10.538 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:10.538 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:52:10.538 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:10.548 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:52:10.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:10.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:10.688 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:10.688 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:10.688 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:52:10.688 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:10.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:10.688 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:10.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:10.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:52:10.868 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:52:10.878 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:10.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29000 150' command took 2 ms to send, 1312 ms to get response, and 1322 ms overall
17-03-17 18:52:10.878 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132561
17-03-17 18:52:10.878 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13256 mm
17-03-17 18:52:10.878 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:10.878 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:52:10.878 -07 000000476 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 18:52:10.878 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:10.878 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 28958, sync = True, waitForSettling = False)
17-03-17 18:52:10.878 -07 000000541 INF: Z Motor: Moving to -0.132561 mm, started at -0.131951 mm, distance = -0.61 um
17-03-17 18:52:10.888 -07 000000541 INF: FPGA: Xmit ZDACW 28958\n [Z Motor]
17-03-17 18:52:10.888 -07 000000438 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:52:10.888 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 18:52:10.888 -07 000000476 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:10.888 -07 000000476 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:10.888 -07 000000476 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:52:10.888 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:52:10.898 -07 000000541 INF: FPGA: 'ZDACW 28958' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:52:10.898 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:10.898 -07 000000569 INF: FPGA: Recv ZDACR 28958
17-03-17 18:52:10.908 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:10.908 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:10.908 -07 000000541 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:52:11.068 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:52:11.068 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:52:11.068 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:11.068 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:52:11.068 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:52:11.068 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:11.078 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:11.078 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:52:11.078 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:52:11.078 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:52:11.288 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:52:11.288 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-17 18:52:11.318 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:11.318 -07 000000433 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:52:11.328 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:11.328 -07 000000476 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:11.328 -07 000000476 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:52:11.328 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 18:52:11.628 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:11.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:12.188 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.994908,
17-03-17 18:52:12.278 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:12.278 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:52:12.288 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:12.288 -07 000000476 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:12.308 -07 000000476 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:12.308 -07 000000476 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:12.308 -07 000000476 INF: Y Motor: Moved to 65.7148 after 1424 ms (table move)
17-03-17 18:52:12.308 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132561 mm (DAC = 28958)
17-03-17 18:52:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.308 -07 000000424 INF: FPGA: Recv ZSGSRD 29927
17-03-17 18:52:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.318 -07 000000608 INF: FPGA: Recv ZSGSRD 29926
17-03-17 18:52:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.328 -07 000000512 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:52:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.338 -07 000000476 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:52:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.348 -07 000000438 INF: FPGA: Recv ZSGSRD 29932
17-03-17 18:52:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.358 -07 000000608 INF: FPGA: Recv ZSGSRD 29922
17-03-17 18:52:12.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:12.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.368 -07 000000512 INF: FPGA: Recv ZSGSRD 29936
17-03-17 18:52:12.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29927
17-03-17 18:52:12.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:52:12.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.398 -07 000000012 INF: FPGA: Recv ZSGSRD 29924
17-03-17 18:52:12.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:12.408 -07 000000415 INF: FPGA: Recv ZPIEZORD 25527
17-03-17 18:52:12.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.418 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.7 V.
17-03-17 18:52:12.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29926 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29926 (-131.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29918 (-131.7 uncal um), Max = 29936 (-131.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:52:12.418 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29926, posNoise = 10, negNoise = 8
17-03-17 18:52:12.418 -07 000000610 INF: Z Motor: After move to -0.132561, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:12.418 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 107 ms (allowed 150 ms), total time = 1532 ms
17-03-17 18:52:12.418 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:12.468 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:52:12.468 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:12.468 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.132574324565473. ----------
17-03-17 18:52:12.468 -07 000000610 INF: Cycle	18	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:12.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28781, sync = True, waitForSettling = True)
17-03-17 18:52:12.468 -07 000000610 INF: Z Motor: Moving to -0.131751 mm, started at -0.132574 mm, distance = 0.82 um
17-03-17 18:52:12.468 -07 000000610 INF: FPGA: Xmit ZDACW 28781\n [Z Motor]
17-03-17 18:52:12.478 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:52:12.478 -07 000000610 INF: FPGA: 'ZDACW 28781' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 18:52:12.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:12.478 -07 000000431 INF: FPGA: Recv ZDACR 28781
17-03-17 18:52:12.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:52:12.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:12.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.638 -07 000000512 INF: FPGA: Recv ZSGSRD 29792
17-03-17 18:52:12.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:12.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29799
17-03-17 18:52:12.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.658 -07 000000438 INF: FPGA: Recv ZSGSRD 29800
17-03-17 18:52:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29799
17-03-17 18:52:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.678 -07 000000512 INF: FPGA: Recv ZSGSRD 29803
17-03-17 18:52:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.688 -07 000000502 INF: FPGA: Recv ZSGSRD 29799
17-03-17 18:52:12.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.698 -07 000000623 INF: FPGA: Recv ZSGSRD 29794
17-03-17 18:52:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.708 -07 000000551 INF: FPGA: Recv ZSGSRD 29798
17-03-17 18:52:12.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.718 -07 000000608 INF: FPGA: Recv ZSGSRD 29796
17-03-17 18:52:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:12.728 -07 000000415 INF: FPGA: Recv ZSGSRD 29797
17-03-17 18:52:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:12.738 -07 000000462 INF: FPGA: Recv ZPIEZORD 25360
17-03-17 18:52:12.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:12.748 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.7 V.
17-03-17 18:52:12.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29798 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29792 (-130.9 uncal um), Max = 29803 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:52:12.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29798, posNoise = 5, negNoise = 6
17-03-17 18:52:12.748 -07 000000610 INF: Z Motor: After move to -0.131751, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:12.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:52:12.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:12.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:12.748 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:12.748 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:12.748 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:12.748 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:12.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:12.748 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:12.748 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:12.748 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:12.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:12.748 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:12.758 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:12.758 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:12.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:12.758 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:12.768 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:52:12.768 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:12.768 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:52:12.768 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:12.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28958 150\n [Camera]
17-03-17 18:52:12.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:13.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:13.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:13.368 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:13.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:13.378 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:13.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:52:13.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:13.378 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:13.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:13.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:52:13.558 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28958 780
17-03-17 18:52:13.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:13.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 18:52:13.748 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:52:13.748 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:13.748 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:13.748 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:52:13.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:52:13.748 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:52:13.748 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:13.758 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:13.758 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:52:13.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:13.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:13.898 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:13.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:13.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:13.908 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:13.908 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:13.908 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1057230896, 0x0, 391868352) start.
17-03-17 18:52:13.918 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:13.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1092653160, 0x0, 418435064) start.
17-03-17 18:52:14.088 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:14.088 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:14.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28958 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:52:14.098 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.132051
17-03-17 18:52:14.098 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13205 mm
17-03-17 18:52:14.098 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:14.098 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:52:14.098 -07 000000623 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:52:14.098 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:14.098 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = False)
17-03-17 18:52:14.098 -07 000000382 INF: Z Motor: Moving to -0.132053 mm, started at -0.131752 mm, distance = -0.30 um
17-03-17 18:52:14.208 -07 000000382 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-17 18:52:14.208 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:52:14.208 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 18:52:14.208 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:14.208 -07 000000623 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:14.208 -07 000000623 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:52:14.208 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:52:14.218 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:14.218 -07 000000382 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 18:52:14.228 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:14.228 -07 000000415 INF: FPGA: Recv ZDACR 28847
17-03-17 18:52:14.238 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:52:14.238 -07 000000382 INF: Z Motor: MoveAbsStepped took 135 ms (did NOT wait for settling yet))
17-03-17 18:52:14.298 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1057230896, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:52:14.298 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1092653160, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:52:14.298 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:52:14.298 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:14.298 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:52:14.298 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:14.298 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:14.298 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:52:14.298 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:14.308 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:52:14.588 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:52:14.588 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 18:52:14.628 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:14.628 -07 000000512 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:52:14.638 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:14.638 -07 000000623 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:14.638 -07 000000623 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:52:14.638 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.205 mm/sec
17-03-17 18:52:15.588 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:15.588 -07 000000462 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:52:15.598 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:15.598 -07 000000623 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:15.618 -07 000000623 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:15.618 -07 000000623 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:52:15.618 -07 000000623 INF: Y Motor: Moved to 66.5400 after 1516 ms (table move)
17-03-17 18:52:15.618 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132053 mm (DAC = 28847)
17-03-17 18:52:15.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.618 -07 000000502 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:52:15.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:15.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.628 -07 000000433 INF: FPGA: Recv ZSGSRD 29838
17-03-17 18:52:15.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.638 -07 000000424 INF: FPGA: Recv ZSGSRD 29843
17-03-17 18:52:15.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.648 -07 000000012 INF: FPGA: Recv ZSGSRD 29847
17-03-17 18:52:15.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.658 -07 000000608 INF: FPGA: Recv ZSGSRD 29847
17-03-17 18:52:15.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29852
17-03-17 18:52:15.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.678 -07 000000623 INF: FPGA: Recv ZSGSRD 29852
17-03-17 18:52:15.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.688 -07 000000608 INF: FPGA: Recv ZSGSRD 29843
17-03-17 18:52:15.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29839
17-03-17 18:52:15.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.708 -07 000000476 INF: FPGA: Recv ZSGSRD 29841
17-03-17 18:52:15.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:15.718 -07 000000551 INF: FPGA: Recv ZPIEZORD 25478
17-03-17 18:52:15.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.728 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.6 V.
17-03-17 18:52:15.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29845 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29845 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29838 (-131.2 uncal um), Max = 29852 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:15.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29845, posNoise = 7, negNoise = 7
17-03-17 18:52:15.728 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:15.728 -07 000000610 INF: Z Motor: Settle wait time = 1518 ms, measure time = 108 ms (allowed 150 ms), total time = 1626 ms
17-03-17 18:52:15.728 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:15.778 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1678 ms
17-03-17 18:52:15.778 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:15.778 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.132053963381991. ----------
17-03-17 18:52:15.778 -07 000000610 INF: Cycle	18	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:15.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28670, sync = True, waitForSettling = True)
17-03-17 18:52:15.778 -07 000000610 INF: Z Motor: Moving to -0.131243 mm, started at -0.132054 mm, distance = 0.81 um
17-03-17 18:52:15.778 -07 000000610 INF: FPGA: Xmit ZDACW 28670\n [Z Motor]
17-03-17 18:52:15.788 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:52:15.788 -07 000000610 INF: FPGA: 'ZDACW 28670' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 18:52:15.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:15.788 -07 000000438 INF: FPGA: Recv ZDACR 28670
17-03-17 18:52:15.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:15.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.948 -07 000000424 INF: FPGA: Recv ZSGSRD 29713
17-03-17 18:52:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.958 -07 000000608 INF: FPGA: Recv ZSGSRD 29726
17-03-17 18:52:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.968 -07 000000623 INF: FPGA: Recv ZSGSRD 29720
17-03-17 18:52:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.978 -07 000000476 INF: FPGA: Recv ZSGSRD 29721
17-03-17 18:52:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.988 -07 000000431 INF: FPGA: Recv ZSGSRD 29722
17-03-17 18:52:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:15.998 -07 000000551 INF: FPGA: Recv ZSGSRD 29717
17-03-17 18:52:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:16.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29719
17-03-17 18:52:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:16.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29716
17-03-17 18:52:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:16.028 -07 000000476 INF: FPGA: Recv ZSGSRD 29716
17-03-17 18:52:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:16.038 -07 000000424 INF: FPGA: Recv ZSGSRD 29722
17-03-17 18:52:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:16.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:16.048 -07 000000438 INF: FPGA: Recv ZPIEZORD 25314
17-03-17 18:52:16.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:16.058 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.375 V. Piezo Error = -9.7 V.
17-03-17 18:52:16.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29719 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29720 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29713 (-130.4 uncal um), Max = 29726 (-130.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:52:16.058 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29719, posNoise = 7, negNoise = 6
17-03-17 18:52:16.058 -07 000000610 INF: Z Motor: After move to -0.131243, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:16.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:52:16.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:16.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:16.058 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:16.058 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:16.058 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:16.058 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:16.058 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:16.058 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:16.058 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:16.058 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:16.058 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:16.058 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:16.058 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:16.058 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:16.068 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:52:16.068 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:16.078 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:52:16.078 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:52:16.078 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:52:16.078 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:16.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28847 150\n [Camera]
17-03-17 18:52:16.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:52:16.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:16.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:16.678 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:52:16.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:52:16.678 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:16.688 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:16.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:52:16.688 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:52:16.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:52:16.688 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:16.688 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:16.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:52:16.868 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28847 780
17-03-17 18:52:17.018 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:17.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:52:17.078 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:52:17.078 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:17.078 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:17.078 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:52:17.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:52:17.088 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:52:17.088 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:17.088 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:17.098 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:52:17.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:17.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:17.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:17.218 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:17.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:17.218 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:17.218 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:17.218 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:52:17.218 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:17.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1128075424, 0x0, 391868352) start.
17-03-17 18:52:17.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:52:17.408 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:17.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28847 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-17 18:52:17.408 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131946
17-03-17 18:52:17.408 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13195 mm
17-03-17 18:52:17.408 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:17.408 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:52:17.408 -07 000000382 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:52:17.408 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28824, sync = True, waitForSettling = False)
17-03-17 18:52:17.408 -07 000000424 INF: Z Motor: Moving to -0.131948 mm, started at -0.131245 mm, distance = -0.70 um
17-03-17 18:52:17.408 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:17.418 -07 000000476 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:52:17.418 -07 000000424 INF: FPGA: Xmit ZDACW 28824\n [Z Motor]
17-03-17 18:52:17.418 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:17.418 -07 000000382 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:17.418 -07 000000382 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:17.418 -07 000000382 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:52:17.418 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:52:17.428 -07 000000424 INF: FPGA: 'ZDACW 28824' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:52:17.428 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:17.438 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:17.438 -07 000000623 INF: FPGA: Recv ZDACR 28824
17-03-17 18:52:17.448 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:52:17.448 -07 000000424 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 18:52:17.548 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.999021,
17-03-17 18:52:17.598 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:52:17.598 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:52:17.598 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:17.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1128075424, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:52:17.598 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:52:17.598 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:17.598 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:17.598 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:17.598 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:52:17.608 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:52:17.798 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:52:17.798 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:52:17.838 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:17.838 -07 000000512 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:52:17.848 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:17.848 -07 000000382 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:17.848 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:52:17.848 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.177 mm/sec
17-03-17 18:52:18.798 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:18.798 -07 000000541 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:52:18.808 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:18.808 -07 000000382 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:18.828 -07 000000382 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:18.828 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:52:18.828 -07 000000382 INF: Y Motor: Moved to 67.3730 after 1415 ms (table move)
17-03-17 18:52:18.828 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131948 mm (DAC = 28824)
17-03-17 18:52:18.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.828 -07 000000569 INF: FPGA: Recv ZSGSRD 29826
17-03-17 18:52:18.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:52:18.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.838 -07 000000502 INF: FPGA: Recv ZSGSRD 29822
17-03-17 18:52:18.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.848 -07 000000476 INF: FPGA: Recv ZSGSRD 29824
17-03-17 18:52:18.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.858 -07 000000012 INF: FPGA: Recv ZSGSRD 29832
17-03-17 18:52:18.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.868 -07 000000512 INF: FPGA: Recv ZSGSRD 29828
17-03-17 18:52:18.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.878 -07 000000569 INF: FPGA: Recv ZSGSRD 29822
17-03-17 18:52:18.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.888 -07 000000551 INF: FPGA: Recv ZSGSRD 29837
17-03-17 18:52:18.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.898 -07 000000476 INF: FPGA: Recv ZSGSRD 29828
17-03-17 18:52:18.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29827
17-03-17 18:52:18.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:52:18.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:18.928 -07 000000476 INF: FPGA: Recv ZSGSRD 29831
17-03-17 18:52:18.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:18.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:18.958 -07 000000476 INF: FPGA: Recv ZPIEZORD 25467
17-03-17 18:52:18.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:52:18.968 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.6 V.
17-03-17 18:52:18.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29828 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29828 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29822 (-131.1 uncal um), Max = 29837 (-131.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:52:18.968 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29828, posNoise = 9, negNoise = 6
17-03-17 18:52:18.968 -07 000000610 INF: Z Motor: After move to -0.131948, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:18.968 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 136 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:52:18.968 -07 000000610 INF: Z Motor: Waiting extra 14 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:18.988 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:52:18.988 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:18.988 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.131944751775581. ----------
17-03-17 18:52:18.988 -07 000000610 INF: Cycle	18	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:18.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28647, sync = True, waitForSettling = True)
17-03-17 18:52:18.988 -07 000000610 INF: Z Motor: Moving to -0.131138 mm, started at -0.131945 mm, distance = 0.81 um
17-03-17 18:52:18.988 -07 000000610 INF: FPGA: Xmit ZDACW 28647\n [Z Motor]
17-03-17 18:52:18.988 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:52:18.998 -07 000000610 INF: FPGA: 'ZDACW 28647' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:18.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:18.998 -07 000000623 INF: FPGA: Recv ZDACR 28647
17-03-17 18:52:19.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.158 -07 000000476 INF: FPGA: Recv ZSGSRD 29703
17-03-17 18:52:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.168 -07 000000561 INF: FPGA: Recv ZSGSRD 29703
17-03-17 18:52:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29697
17-03-17 18:52:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.188 -07 000000438 INF: FPGA: Recv ZSGSRD 29708
17-03-17 18:52:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.198 -07 000000569 INF: FPGA: Recv ZSGSRD 29709
17-03-17 18:52:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.208 -07 000000476 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:52:19.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:52:19.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.228 -07 000000415 INF: FPGA: Recv ZSGSRD 29699
17-03-17 18:52:19.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.238 -07 000000012 INF: FPGA: Recv ZSGSRD 29705
17-03-17 18:52:19.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:19.248 -07 000000561 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:52:19.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:19.258 -07 000000476 INF: FPGA: Recv ZPIEZORD 25295
17-03-17 18:52:19.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:19.268 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.7 V.
17-03-17 18:52:19.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29703 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29703 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29697 (-130.3 uncal um), Max = 29709 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:52:19.268 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29703, posNoise = 6, negNoise = 6
17-03-17 18:52:19.268 -07 000000610 INF: Z Motor: After move to -0.131138, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:19.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:52:19.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:19.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:19.268 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:19.268 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:19.268 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:19.268 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:19.268 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:52:19.268 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:19.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:19.268 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:19.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:19.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:19.278 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:52:19.278 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:19.278 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:52:19.278 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:19.288 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:52:19.288 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:52:19.288 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:52:19.288 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:52:19.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28824 150\n [Camera]
17-03-17 18:52:19.488 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:19.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:19.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:19.888 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:19.888 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:19.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 18:52:19.888 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:19.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:19.888 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:19.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:19.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:52:20.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28824 780
17-03-17 18:52:20.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:20.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:52:20.268 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:52:20.268 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:20.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:52:20.268 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:52:20.268 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:20.268 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:20.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:20.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:52:20.278 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:52:20.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:20.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:20.418 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:20.418 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:20.418 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:52:20.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:20.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:20.428 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:20.428 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:20.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:52:20.608 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:20.608 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:20.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28824 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:52:20.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:52:20.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.373046875, Z-Position -0.131141725257861. ------
17-03-17 18:52:20.618 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13704 mm
17-03-17 18:52:20.618 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:20.618 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:20.618 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:52:20.618 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 18:52:20.618 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29936, sync = True, waitForSettling = False)
17-03-17 18:52:20.618 -07 000000608 INF: Z Motor: Moving to -0.137038 mm, started at -0.131142 mm, distance = -5.90 um
17-03-17 18:52:20.618 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:20.628 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:20.628 -07 000000608 INF: FPGA: Xmit ZDACW 29936\n [Z Motor]
17-03-17 18:52:20.628 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:52:20.638 -07 000000608 INF: FPGA: 'ZDACW 29936' command took 3 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:52:20.638 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:52:20.648 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:20.648 -07 000000623 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:52:20.658 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:20.658 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 18:52:20.658 -07 000000569 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:20.658 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:20.658 -07 000000569 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:52:20.658 -07 000000462 INF: FPGA: Recv ZDACR 29936
17-03-17 18:52:20.668 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:52:20.668 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:52:20.668 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:20.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:52:20.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:52:20.798 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:20.798 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:52:20.798 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:52:20.798 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:20.798 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:20.808 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:20.808 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:52:20.808 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:52:20.838 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:52:20.838 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 18:52:21.038 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:52:21.038 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 18:52:21.078 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:21.078 -07 000000382 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:52:21.088 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:21.088 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:21.088 -07 000000569 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:52:21.088 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-17 18:52:21.628 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:21.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:22.038 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:22.038 -07 000000476 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:52:22.048 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.048 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:22.058 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:22.058 -07 000000569 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:22.058 -07 000000569 INF: Y Motor: Moved to 68.2056 after 1442 ms (table move)
17-03-17 18:52:22.068 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137038 mm (DAC = 29936)
17-03-17 18:52:22.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.068 -07 000000433 INF: FPGA: Recv ZSGSRD 30623
17-03-17 18:52:22.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:22.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.078 -07 000000512 INF: FPGA: Recv ZSGSRD 30622
17-03-17 18:52:22.088 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.088 -07 000000486 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:52:22.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.098 -07 000000382 INF: FPGA: Recv ZSGSRD 30620
17-03-17 18:52:22.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.108 -07 000000502 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:52:22.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.118 -07 000000424 INF: FPGA: Recv ZSGSRD 30618
17-03-17 18:52:22.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.128 -07 000000512 INF: FPGA: Recv ZSGSRD 30616
17-03-17 18:52:22.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.138 -07 000000382 INF: FPGA: Recv ZSGSRD 30615
17-03-17 18:52:22.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.148 -07 000000561 INF: FPGA: Recv ZSGSRD 30624
17-03-17 18:52:22.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:22.158 -07 000000476 INF: FPGA: Recv ZSGSRD 30627
17-03-17 18:52:22.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.168 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:22.168 -07 000000608 INF: FPGA: Recv ZPIEZORD 26536
17-03-17 18:52:22.178 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.178 -07 000000415 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -9.0 V.
17-03-17 18:52:22.178 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30622 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30622 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30615 (-136.2 uncal um), Max = 30627 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:22.178 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30622, posNoise = 5, negNoise = 7
17-03-17 18:52:22.178 -07 000000415 INF: Z Motor: After move to -0.137038, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:22.178 -07 000000415 INF: Z Motor: Settle wait time = 1444 ms, measure time = 109 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:52:22.178 -07 000000415 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:22.228 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 18:52:22.228 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:22.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:22.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:22.228 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:22.228 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:22.228 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:52:22.228 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:22.228 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:52:22.228 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:52:22.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:52:22.238 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:52:22.248 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:52:22.248 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:52:22.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:52:22.288 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:52:22.488 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:52:22.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:52:22.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:52:22.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610603336, 0x0, 559484976) start.
17-03-17 18:52:22.528 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:52:22.528 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:52:22.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:52:22.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610603336, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:52:22.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:22.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:52:22.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:52:22.728 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:22.728 -07 000000551 INF: Autofocus start
17-03-17 18:52:22.728 -07 000000551 INF: MeasureProfile start
17-03-17 18:52:22.728 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:22.738 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:52:22.738 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:52:22.738 -07 000000551 INF: MeasureProfile done
17-03-17 18:52:22.738 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:52:22.738 -07 000000551 INF: Autofocus finished
17-03-17 18:52:22.908 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.979922,
17-03-17 18:52:22.938 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:52:22.938 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:52:22.938 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137045576216139. ----------
17-03-17 18:52:22.948 -07 000000610 INF: Cycle	18	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:22.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28460, sync = True, waitForSettling = True)
17-03-17 18:52:22.948 -07 000000610 INF: Z Motor: Moving to -0.130282 mm, started at -0.137046 mm, distance = 6.76 um
17-03-17 18:52:22.948 -07 000000610 INF: FPGA: Xmit ZDACW 28460\n [Z Motor]
17-03-17 18:52:22.948 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:52:22.958 -07 000000610 INF: FPGA: 'ZDACW 28460' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:52:22.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:22.958 -07 000000382 INF: FPGA: Recv ZDACR 28460
17-03-17 18:52:22.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:22.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29571
17-03-17 18:52:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.128 -07 000000623 INF: FPGA: Recv ZSGSRD 29568
17-03-17 18:52:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.138 -07 000000541 INF: FPGA: Recv ZSGSRD 29566
17-03-17 18:52:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.148 -07 000000438 INF: FPGA: Recv ZSGSRD 29568
17-03-17 18:52:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29573
17-03-17 18:52:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.168 -07 000000512 INF: FPGA: Recv ZSGSRD 29571
17-03-17 18:52:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.178 -07 000000415 INF: FPGA: Recv ZSGSRD 29567
17-03-17 18:52:23.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.188 -07 000000431 INF: FPGA: Recv ZSGSRD 29575
17-03-17 18:52:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29571
17-03-17 18:52:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:23.208 -07 000000462 INF: FPGA: Recv ZSGSRD 29569
17-03-17 18:52:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:23.218 -07 000000512 INF: FPGA: Recv ZPIEZORD 25138
17-03-17 18:52:23.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:23.228 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.7 V.
17-03-17 18:52:23.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29570 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29570 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29566 (-129.5 uncal um), Max = 29575 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:52:23.228 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29570, posNoise = 5, negNoise = 4
17-03-17 18:52:23.228 -07 000000610 INF: Z Motor: After move to -0.130282, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:23.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:52:23.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:23.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:23.228 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:23.228 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:23.228 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:23.228 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:23.228 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:23.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:23.228 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:23.228 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:23.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:23.228 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:23.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:23.238 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:23.238 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:52:23.238 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:23.238 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:52:23.238 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:52:23.248 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:52:23.248 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:52:23.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28636 150\n [Camera]
17-03-17 18:52:23.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:23.838 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:23.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:23.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:23.838 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:23.838 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:52:23.838 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:23.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:23.848 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:23.848 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:23.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:52:24.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28636 780
17-03-17 18:52:24.178 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:24.228 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:52:24.228 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:52:24.228 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:24.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:52:24.228 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:52:24.228 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:24.228 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:24.238 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:24.238 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:52:24.238 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:52:24.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:24.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:24.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:24.378 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:24.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:52:24.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:24.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:24.378 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:24.378 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:24.378 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:52:24.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:52:24.568 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:24.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28636 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-17 18:52:24.568 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130962
17-03-17 18:52:24.568 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13096 mm
17-03-17 18:52:24.568 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:24.568 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:52:24.568 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:52:24.568 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:24.568 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = False)
17-03-17 18:52:24.568 -07 000000476 INF: Z Motor: Moving to -0.130964 mm, started at -0.130287 mm, distance = -0.68 um
17-03-17 18:52:24.568 -07 000000623 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:52:24.578 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:24.578 -07 000000486 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:24.578 -07 000000476 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-17 18:52:24.578 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:24.578 -07 000000486 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:52:24.578 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:52:24.588 -07 000000476 INF: FPGA: 'ZDACW 28609' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:52:24.588 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:24.588 -07 000000551 INF: FPGA: Recv ZDACR 28609
17-03-17 18:52:24.598 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:24.598 -07 000000476 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:52:24.598 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:24.758 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:52:24.758 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:52:24.758 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:24.768 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:52:24.768 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:52:24.768 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:24.768 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:24.768 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:52:24.768 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:52:24.778 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:52:24.968 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:52:24.968 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:52:25.008 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:25.008 -07 000000512 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:52:25.018 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:25.018 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:25.018 -07 000000486 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:52:25.018 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 18:52:25.968 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:25.968 -07 000000438 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:52:25.978 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:25.978 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:25.998 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:25.998 -07 000000486 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:25.998 -07 000000486 INF: Y Motor: Moved to 69.0278 after 1425 ms (table move)
17-03-17 18:52:25.998 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130964 mm (DAC = 28609)
17-03-17 18:52:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:25.998 -07 000000476 INF: FPGA: Recv ZSGSRD 29675
17-03-17 18:52:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.008 -07 000000569 INF: FPGA: Recv ZSGSRD 29670
17-03-17 18:52:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.018 -07 000000431 INF: FPGA: Recv ZSGSRD 29675
17-03-17 18:52:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.028 -07 000000512 INF: FPGA: Recv ZSGSRD 29678
17-03-17 18:52:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.038 -07 000000486 INF: FPGA: Recv ZSGSRD 29678
17-03-17 18:52:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.048 -07 000000476 INF: FPGA: Recv ZSGSRD 29678
17-03-17 18:52:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29672
17-03-17 18:52:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.068 -07 000000415 INF: FPGA: Recv ZSGSRD 29675
17-03-17 18:52:26.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.078 -07 000000424 INF: FPGA: Recv ZSGSRD 29674
17-03-17 18:52:26.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29679
17-03-17 18:52:26.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:26.098 -07 000000541 INF: FPGA: Recv ZPIEZORD 25323
17-03-17 18:52:26.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.108 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.6 V.
17-03-17 18:52:26.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29675 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29675 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29679 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:52:26.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29675, posNoise = 4, negNoise = 5
17-03-17 18:52:26.108 -07 000000610 INF: Z Motor: After move to -0.130964, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:26.108 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:52:26.108 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:26.158 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:52:26.158 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:26.158 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.130961847317891. ----------
17-03-17 18:52:26.158 -07 000000610 INF: Cycle	18	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:26.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28432, sync = True, waitForSettling = True)
17-03-17 18:52:26.158 -07 000000610 INF: Z Motor: Moving to -0.130153 mm, started at -0.130962 mm, distance = 0.81 um
17-03-17 18:52:26.158 -07 000000610 INF: FPGA: Xmit ZDACW 28432\n [Z Motor]
17-03-17 18:52:26.158 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:52:26.168 -07 000000610 INF: FPGA: 'ZDACW 28432' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:26.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:26.168 -07 000000502 INF: FPGA: Recv ZDACR 28432
17-03-17 18:52:26.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.328 -07 000000476 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:52:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.338 -07 000000608 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:52:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.348 -07 000000431 INF: FPGA: Recv ZSGSRD 29547
17-03-17 18:52:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.358 -07 000000424 INF: FPGA: Recv ZSGSRD 29553
17-03-17 18:52:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.368 -07 000000415 INF: FPGA: Recv ZSGSRD 29548
17-03-17 18:52:26.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.378 -07 000000541 INF: FPGA: Recv ZSGSRD 29550
17-03-17 18:52:26.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.388 -07 000000608 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:52:26.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.398 -07 000000462 INF: FPGA: Recv ZSGSRD 29550
17-03-17 18:52:26.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.408 -07 000000623 INF: FPGA: Recv ZSGSRD 29553
17-03-17 18:52:26.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:26.418 -07 000000415 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:52:26.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:26.428 -07 000000476 INF: FPGA: Recv ZPIEZORD 25154
17-03-17 18:52:26.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:26.438 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.6 V.
17-03-17 18:52:26.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29550 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29550 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29546 (-129.4 uncal um), Max = 29553 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:52:26.438 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29550, posNoise = 3, negNoise = 4
17-03-17 18:52:26.438 -07 000000610 INF: Z Motor: After move to -0.130153, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:26.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:52:26.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:26.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:26.438 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:26.438 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:26.438 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:26.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:26.438 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:26.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:26.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:26.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:26.438 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:26.438 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:26.448 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:52:26.448 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:26.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:26.448 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:26.458 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:52:26.458 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:52:26.458 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:52:26.458 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:26.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28609 150\n [Camera]
17-03-17 18:52:26.628 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:26.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:26.658 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:27.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:27.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:27.058 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:27.058 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:27.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:52:27.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:27.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:27.058 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:27.058 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:27.058 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:52:27.248 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28609 780
17-03-17 18:52:27.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:27.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:52:27.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:52:27.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:27.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:52:27.438 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:52:27.438 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:27.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:27.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:52:27.438 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:27.448 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:52:27.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:27.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:27.588 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:27.588 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:27.588 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:52:27.598 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:27.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:27.598 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:27.598 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:27.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:52:27.778 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:52:27.778 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:27.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28609 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-17 18:52:27.788 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130560
17-03-17 18:52:27.788 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13056 mm
17-03-17 18:52:27.788 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:27.788 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:52:27.788 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:52:27.788 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:27.788 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 28521, sync = True, waitForSettling = False)
17-03-17 18:52:27.788 -07 000000623 INF: Z Motor: Moving to -0.130561 mm, started at -0.130159 mm, distance = -0.40 um
17-03-17 18:52:27.788 -07 000000424 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:52:27.798 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:27.798 -07 000000608 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:27.798 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:27.798 -07 000000608 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:52:27.798 -07 000000623 INF: FPGA: Xmit ZDACW 28521\n [Z Motor]
17-03-17 18:52:27.798 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:52:27.808 -07 000000623 INF: FPGA: 'ZDACW 28521' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:52:27.808 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:27.818 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:27.818 -07 000000433 INF: FPGA: Recv ZDACR 28521
17-03-17 18:52:27.828 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:52:27.828 -07 000000623 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:52:27.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:52:27.978 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:52:27.978 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:27.978 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:52:27.978 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:52:27.978 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:27.978 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:27.978 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:27.978 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:52:27.988 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:52:28.188 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:52:28.188 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 393 ms overall
17-03-17 18:52:28.218 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:28.228 -07 000000541 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:52:28.228 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:28.228 -07 000000608 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:28.228 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:52:28.228 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 18:52:28.268 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.003063,
17-03-17 18:52:29.178 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:29.178 -07 000000433 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:52:29.188 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:29.188 -07 000000608 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:29.208 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:29.208 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:29.208 -07 000000608 INF: Y Motor: Moved to 69.8638 after 1416 ms (table move)
17-03-17 18:52:29.208 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130561 mm (DAC = 28521)
17-03-17 18:52:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.208 -07 000000541 INF: FPGA: Recv ZSGSRD 29612
17-03-17 18:52:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:52:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.218 -07 000000438 INF: FPGA: Recv ZSGSRD 29618
17-03-17 18:52:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.228 -07 000000382 INF: FPGA: Recv ZSGSRD 29618
17-03-17 18:52:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.238 -07 000000433 INF: FPGA: Recv ZSGSRD 29607
17-03-17 18:52:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29611
17-03-17 18:52:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.258 -07 000000012 INF: FPGA: Recv ZSGSRD 29616
17-03-17 18:52:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.268 -07 000000415 INF: FPGA: Recv ZSGSRD 29611
17-03-17 18:52:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29615
17-03-17 18:52:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.288 -07 000000561 INF: FPGA: Recv ZSGSRD 29608
17-03-17 18:52:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.298 -07 000000512 INF: FPGA: Recv ZSGSRD 29615
17-03-17 18:52:29.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:29.308 -07 000000382 INF: FPGA: Recv ZPIEZORD 25277
17-03-17 18:52:29.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.318 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.5 V.
17-03-17 18:52:29.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29613 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29607 (-129.7 uncal um), Max = 29618 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:52:29.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29613, posNoise = 5, negNoise = 6
17-03-17 18:52:29.318 -07 000000610 INF: Z Motor: After move to -0.130561, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:29.318 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 108 ms (allowed 150 ms), total time = 1525 ms
17-03-17 18:52:29.318 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:29.368 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 18:52:29.368 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:29.368 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.130563546165102. ----------
17-03-17 18:52:29.368 -07 000000610 INF: Cycle	18	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:29.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28344, sync = True, waitForSettling = True)
17-03-17 18:52:29.368 -07 000000610 INF: Z Motor: Moving to -0.129751 mm, started at -0.130564 mm, distance = 0.81 um
17-03-17 18:52:29.368 -07 000000610 INF: FPGA: Xmit ZDACW 28344\n [Z Motor]
17-03-17 18:52:29.368 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:52:29.378 -07 000000610 INF: FPGA: 'ZDACW 28344' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:52:29.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:29.378 -07 000000433 INF: FPGA: Recv ZDACR 28344
17-03-17 18:52:29.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:29.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.538 -07 000000561 INF: FPGA: Recv ZSGSRD 29486
17-03-17 18:52:29.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.548 -07 000000512 INF: FPGA: Recv ZSGSRD 29489
17-03-17 18:52:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.558 -07 000000476 INF: FPGA: Recv ZSGSRD 29477
17-03-17 18:52:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.568 -07 000000608 INF: FPGA: Recv ZSGSRD 29485
17-03-17 18:52:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.578 -07 000000462 INF: FPGA: Recv ZSGSRD 29486
17-03-17 18:52:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.588 -07 000000561 INF: FPGA: Recv ZSGSRD 29483
17-03-17 18:52:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29490
17-03-17 18:52:29.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.608 -07 000000476 INF: FPGA: Recv ZSGSRD 29488
17-03-17 18:52:29.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.618 -07 000000012 INF: FPGA: Recv ZSGSRD 29487
17-03-17 18:52:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:29.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29484
17-03-17 18:52:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:29.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:29.638 -07 000000623 INF: FPGA: Recv ZPIEZORD 25076
17-03-17 18:52:29.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:29.648 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.325 V. Piezo Error = -9.7 V.
17-03-17 18:52:29.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29486 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29486 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29477 (-128.9 uncal um), Max = 29490 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:52:29.648 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29486, posNoise = 4, negNoise = 9
17-03-17 18:52:29.648 -07 000000610 INF: Z Motor: After move to -0.129751, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:29.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:52:29.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:29.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:29.648 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:29.648 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:29.648 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:29.648 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:29.648 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:29.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:29.648 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:29.648 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:29.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:29.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:29.648 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:52:29.648 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:29.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:29.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:29.668 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:52:29.668 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:52:29.668 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:52:29.668 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:52:29.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28521 150\n [Camera]
17-03-17 18:52:29.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:30.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:30.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:30.278 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:30.278 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:30.278 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:52:30.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:30.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:30.288 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:30.288 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:30.288 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 18:52:30.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28521 780
17-03-17 18:52:30.618 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:30.678 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:52:30.678 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:52:30.678 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:30.688 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:30.688 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:52:30.688 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:52:30.688 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:52:30.688 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:30.688 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:30.698 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:52:30.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:30.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:30.808 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:30.808 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:30.808 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 18:52:30.818 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:30.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:30.818 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:30.818 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:30.818 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 18:52:30.998 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:30.998 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:31.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28521 150' command took 2 ms to send, 1310 ms to get response, and 1329 ms overall
17-03-17 18:52:31.008 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130123
17-03-17 18:52:31.008 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13012 mm
17-03-17 18:52:31.008 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:31.008 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:52:31.008 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:52:31.008 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 28425, sync = True, waitForSettling = False)
17-03-17 18:52:31.008 -07 000000486 INF: Z Motor: Moving to -0.130121 mm, started at -0.129748 mm, distance = -0.37 um
17-03-17 18:52:31.008 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:31.018 -07 000000486 INF: FPGA: Xmit ZDACW 28425\n [Z Motor]
17-03-17 18:52:31.018 -07 000000438 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:52:31.018 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:31.018 -07 000000382 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:31.018 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:31.018 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:52:31.018 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:52:31.028 -07 000000486 INF: FPGA: 'ZDACW 28425' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:52:31.028 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:31.038 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:31.038 -07 000000424 INF: FPGA: Recv ZDACR 28425
17-03-17 18:52:31.048 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:52:31.048 -07 000000486 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 18:52:31.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:52:31.198 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:52:31.198 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:31.198 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:52:31.198 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:52:31.198 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:31.198 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:31.198 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:31.198 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:52:31.208 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:52:31.398 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:52:31.398 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:52:31.438 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:31.438 -07 000000561 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:52:31.448 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:52:31.448 -07 000000382 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:31.448 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:52:31.448 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-17 18:52:31.628 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:31.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:32.398 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:32.398 -07 000000512 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:52:32.408 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:32.408 -07 000000382 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:32.428 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:32.428 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:32.428 -07 000000382 INF: Y Motor: Moved to 70.6890 after 1414 ms (table move)
17-03-17 18:52:32.428 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130121 mm (DAC = 28425)
17-03-17 18:52:32.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.428 -07 000000569 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:52:32.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:32.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.438 -07 000000415 INF: FPGA: Recv ZSGSRD 29541
17-03-17 18:52:32.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29545
17-03-17 18:52:32.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:52:32.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.468 -07 000000462 INF: FPGA: Recv ZSGSRD 29545
17-03-17 18:52:32.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.478 -07 000000476 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:52:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.488 -07 000000382 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:52:32.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.498 -07 000000608 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:52:32.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.508 -07 000000433 INF: FPGA: Recv ZSGSRD 29537
17-03-17 18:52:32.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.518 -07 000000541 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:52:32.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:32.528 -07 000000512 INF: FPGA: Recv ZPIEZORD 25219
17-03-17 18:52:32.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.538 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.5 V.
17-03-17 18:52:32.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29544 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29544 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29537 (-129.3 uncal um), Max = 29549 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:32.538 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29544, posNoise = 5, negNoise = 7
17-03-17 18:52:32.538 -07 000000610 INF: Z Motor: After move to -0.130121, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:32.538 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 107 ms (allowed 150 ms), total time = 1523 ms
17-03-17 18:52:32.538 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:32.588 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:52:32.588 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:32.588 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.130120275527321. ----------
17-03-17 18:52:32.588 -07 000000610 INF: Cycle	18	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:32.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28249, sync = True, waitForSettling = True)
17-03-17 18:52:32.588 -07 000000610 INF: Z Motor: Moving to -0.129316 mm, started at -0.130120 mm, distance = 0.80 um
17-03-17 18:52:32.588 -07 000000610 INF: FPGA: Xmit ZDACW 28249\n [Z Motor]
17-03-17 18:52:32.588 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:52:32.598 -07 000000610 INF: FPGA: 'ZDACW 28249' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:52:32.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:32.598 -07 000000012 INF: FPGA: Recv ZDACR 28249
17-03-17 18:52:32.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.758 -07 000000382 INF: FPGA: Recv ZSGSRD 29424
17-03-17 18:52:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.768 -07 000000438 INF: FPGA: Recv ZSGSRD 29414
17-03-17 18:52:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29426
17-03-17 18:52:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29411
17-03-17 18:52:32.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.798 -07 000000541 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:52:32.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.808 -07 000000608 INF: FPGA: Recv ZSGSRD 29425
17-03-17 18:52:32.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.818 -07 000000433 INF: FPGA: Recv ZSGSRD 29413
17-03-17 18:52:32.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.828 -07 000000382 INF: FPGA: Recv ZSGSRD 29416
17-03-17 18:52:32.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.838 -07 000000012 INF: FPGA: Recv ZSGSRD 29419
17-03-17 18:52:32.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:32.848 -07 000000569 INF: FPGA: Recv ZSGSRD 29412
17-03-17 18:52:32.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:32.858 -07 000000608 INF: FPGA: Recv ZPIEZORD 25010
17-03-17 18:52:32.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:32.868 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.7 V.
17-03-17 18:52:32.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29418 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29417 (-128.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29411 (-128.5 uncal um), Max = 29426 (-128.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:32.868 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29418, posNoise = 8, negNoise = 7
17-03-17 18:52:32.868 -07 000000610 INF: Z Motor: After move to -0.129316, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:32.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:52:32.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:32.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:32.868 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:32.868 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:32.868 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:32.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:32.868 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:32.868 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:32.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:32.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:32.868 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:32.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:32.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:52:32.868 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:32.878 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:52:32.878 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:32.878 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:52:32.878 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:52:32.878 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:52:32.878 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:52:32.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28425 150\n [Camera]
17-03-17 18:52:33.088 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:52:33.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:52:33.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:52:33.488 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:33.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:33.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 18:52:33.488 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:52:33.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:52:33.488 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:33.488 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:33.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 18:52:33.628 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.978563,
17-03-17 18:52:33.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28425 780
17-03-17 18:52:33.828 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:33.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:52:33.868 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:52:33.868 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:33.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:52:33.868 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:52:33.868 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:33.878 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:33.878 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:33.878 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:52:33.878 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:52:34.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:34.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:34.018 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:34.018 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:34.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 18:52:34.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:34.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:34.018 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:34.018 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:34.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 18:52:34.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:34.208 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:34.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28425 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-17 18:52:34.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:52:34.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129310824797459. ------
17-03-17 18:52:34.208 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:34.208 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13593 mm
17-03-17 18:52:34.218 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:34.218 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:34.218 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:52:34.218 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:52:34.218 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:52:34.218 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:34.218 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29694, sync = True, waitForSettling = False)
17-03-17 18:52:34.218 -07 000000433 INF: Z Motor: Moving to -0.135930 mm, started at -0.129311 mm, distance = -6.62 um
17-03-17 18:52:34.218 -07 000000561 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:52:34.228 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:34.228 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:52:34.228 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:34.228 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:34.228 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:52:34.238 -07 000000433 INF: FPGA: Xmit ZDACW 29694\n [Z Motor]
17-03-17 18:52:34.238 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:52:34.248 -07 000000433 INF: FPGA: 'ZDACW 29694' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:52:34.248 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:34.248 -07 000000561 INF: FPGA: Recv ZDACR 29694
17-03-17 18:52:34.258 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:34.258 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:34.258 -07 000000433 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:52:34.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:52:34.398 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:52:34.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:34.398 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:52:34.398 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:52:34.398 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:34.398 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:34.398 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:52:34.408 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:34.418 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:52:34.428 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:52:34.428 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 18:52:34.628 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:52:34.628 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 18:52:34.668 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:34.668 -07 000000476 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:52:34.678 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:52:34.678 -07 000000415 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:34.678 -07 000000415 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:52:34.678 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 18:52:35.628 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:35.628 -07 000000382 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:52:35.638 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:35.638 -07 000000415 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:35.658 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:35.658 -07 000000415 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:35.658 -07 000000415 INF: Y Motor: Moved to 71.5195 after 1437 ms (table move)
17-03-17 18:52:35.658 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135930 mm (DAC = 29694)
17-03-17 18:52:35.658 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.658 -07 000000415 INF: FPGA: Recv ZSGSRD 30445
17-03-17 18:52:35.668 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:52:35.668 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.668 -07 000000433 INF: FPGA: Recv ZSGSRD 30442
17-03-17 18:52:35.678 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.678 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.678 -07 000000502 INF: FPGA: Recv ZSGSRD 30448
17-03-17 18:52:35.688 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.688 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.688 -07 000000569 INF: FPGA: Recv ZSGSRD 30452
17-03-17 18:52:35.698 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.698 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.698 -07 000000486 INF: FPGA: Recv ZSGSRD 30453
17-03-17 18:52:35.708 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.708 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.708 -07 000000433 INF: FPGA: Recv ZSGSRD 30454
17-03-17 18:52:35.718 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.718 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30455
17-03-17 18:52:35.728 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.728 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30449
17-03-17 18:52:35.738 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.738 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.738 -07 000000541 INF: FPGA: Recv ZSGSRD 30444
17-03-17 18:52:35.748 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.748 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:35.748 -07 000000476 INF: FPGA: Recv ZSGSRD 30446
17-03-17 18:52:35.758 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.758 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:35.758 -07 000000502 INF: FPGA: Recv ZPIEZORD 26377
17-03-17 18:52:35.768 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:35.768 -07 000000608 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.0 V.
17-03-17 18:52:35.768 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30449 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30448 (-135.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30442 (-135.1 uncal um), Max = 30455 (-135.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:35.768 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30449, posNoise = 6, negNoise = 7
17-03-17 18:52:35.768 -07 000000608 INF: Z Motor: After move to -0.135930, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:35.768 -07 000000608 INF: Z Motor: Settle wait time = 1441 ms, measure time = 106 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:52:35.768 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:35.818 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:52:35.818 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:35.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:35.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:35.818 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:35.818 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:52:35.818 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:35.818 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:35.818 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:35.818 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:52:35.828 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:35.828 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:52:35.838 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:52:35.838 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:52:35.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:52:35.888 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:52:36.088 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:52:36.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:52:36.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:52:36.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 18:52:36.128 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:52:36.128 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:52:36.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:52:36.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:52:36.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:36.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:52:36.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:52:36.228 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:36.228 -07 000000382 INF: Autofocus start
17-03-17 18:52:36.228 -07 000000382 INF: MeasureProfile start
17-03-17 18:52:36.228 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:36.238 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:52:36.238 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:52:36.238 -07 000000382 INF: MeasureProfile done
17-03-17 18:52:36.238 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:52:36.238 -07 000000382 INF: Autofocus finished
17-03-17 18:52:36.438 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:52:36.438 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:52:36.438 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135934187515614. ----------
17-03-17 18:52:36.438 -07 000000610 INF: Cycle	18	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:36.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28219, sync = True, waitForSettling = True)
17-03-17 18:52:36.448 -07 000000610 INF: Z Motor: Moving to -0.129178 mm, started at -0.135934 mm, distance = 6.76 um
17-03-17 18:52:36.448 -07 000000610 INF: FPGA: Xmit ZDACW 28219\n [Z Motor]
17-03-17 18:52:36.448 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:52:36.458 -07 000000610 INF: FPGA: 'ZDACW 28219' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:36.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:36.458 -07 000000431 INF: FPGA: Recv ZDACR 28219
17-03-17 18:52:36.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29401
17-03-17 18:52:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:36.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.628 -07 000000486 INF: FPGA: Recv ZSGSRD 29397
17-03-17 18:52:36.628 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:36.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:36.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.638 -07 000000382 INF: FPGA: Recv ZSGSRD 29393
17-03-17 18:52:36.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.648 -07 000000502 INF: FPGA: Recv ZSGSRD 29401
17-03-17 18:52:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.658 -07 000000476 INF: FPGA: Recv ZSGSRD 29400
17-03-17 18:52:36.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.668 -07 000000433 INF: FPGA: Recv ZSGSRD 29402
17-03-17 18:52:36.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.678 -07 000000623 INF: FPGA: Recv ZSGSRD 29394
17-03-17 18:52:36.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.688 -07 000000512 INF: FPGA: Recv ZSGSRD 29393
17-03-17 18:52:36.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.698 -07 000000486 INF: FPGA: Recv ZSGSRD 29406
17-03-17 18:52:36.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:36.708 -07 000000476 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:52:36.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:36.718 -07 000000433 INF: FPGA: Recv ZPIEZORD 24981
17-03-17 18:52:36.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:36.728 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.7 V.
17-03-17 18:52:36.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29398 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29398 (-128.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29393 (-128.4 uncal um), Max = 29406 (-128.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:52:36.728 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29398, posNoise = 8, negNoise = 5
17-03-17 18:52:36.728 -07 000000610 INF: Z Motor: After move to -0.129178, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:36.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:52:36.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:36.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:36.728 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:36.728 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:36.728 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:36.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:36.728 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:36.728 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:36.728 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:52:36.728 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:36.728 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:36.728 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:36.738 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:36.738 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:36.738 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:36.738 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:36.748 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:52:36.748 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:52:36.748 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:52:36.748 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:52:36.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28395 150\n [Camera]
17-03-17 18:52:36.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:37.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:37.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:37.348 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:37.348 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:37.348 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 18:52:37.348 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:37.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:37.348 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:37.348 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:37.348 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-17 18:52:37.538 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28395 780
17-03-17 18:52:37.688 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:37.728 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:52:37.728 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:52:37.728 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:37.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:52:37.728 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:52:37.728 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:37.728 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:37.728 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:52:37.738 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:52:37.738 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:52:37.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:37.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:37.878 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:37.878 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:37.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 18:52:37.878 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:37.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:37.878 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:38.038 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:38.038 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:52:38.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:52:38.068 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:38.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28395 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-17 18:52:38.068 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129191
17-03-17 18:52:38.068 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12919 mm
17-03-17 18:52:38.068 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:38.068 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:52:38.068 -07 000000608 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:52:38.068 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:38.068 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28222, sync = True, waitForSettling = False)
17-03-17 18:52:38.068 -07 000000561 INF: Z Motor: Moving to -0.129192 mm, started at -0.129182 mm, distance = -0.01 um
17-03-17 18:52:38.078 -07 000000561 INF: FPGA: Xmit ZDACW 28222\n [Z Motor]
17-03-17 18:52:38.078 -07 000000433 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:52:38.078 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:52:38.078 -07 000000608 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:38.078 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:52:38.078 -07 000000608 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:38.078 -07 000000608 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:52:38.088 -07 000000561 INF: FPGA: 'ZDACW 28222' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:38.088 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:38.088 -07 000000433 INF: FPGA: Recv ZDACR 28222
17-03-17 18:52:38.098 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:38.098 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:38.098 -07 000000561 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 18:52:38.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 412 ms.
17-03-17 18:52:38.288 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:52:38.288 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:38.298 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:52:38.298 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 18:52:38.418 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:52:38.418 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:52:38.418 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:38.428 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:38.428 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 550 ms.
17-03-17 18:52:38.468 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:52:38.468 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:52:38.508 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:38.508 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:52:38.518 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:38.518 -07 000000608 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:38.518 -07 000000608 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:52:38.518 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 18:52:38.988 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 3.971733,
17-03-17 18:52:39.468 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:39.468 -07 000000476 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:52:39.478 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:39.478 -07 000000608 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:39.498 -07 000000608 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:39.498 -07 000000608 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:39.498 -07 000000608 INF: Y Motor: Moved to 72.3501 after 1422 ms (table move)
17-03-17 18:52:39.498 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129192 mm (DAC = 28222)
17-03-17 18:52:39.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.498 -07 000000462 INF: FPGA: Recv ZSGSRD 29399
17-03-17 18:52:39.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:39.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:52:39.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.518 -07 000000561 INF: FPGA: Recv ZSGSRD 29400
17-03-17 18:52:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.528 -07 000000382 INF: FPGA: Recv ZSGSRD 29402
17-03-17 18:52:39.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.538 -07 000000433 INF: FPGA: Recv ZSGSRD 29402
17-03-17 18:52:39.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.548 -07 000000431 INF: FPGA: Recv ZSGSRD 29400
17-03-17 18:52:39.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.558 -07 000000623 INF: FPGA: Recv ZSGSRD 29410
17-03-17 18:52:39.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.568 -07 000000561 INF: FPGA: Recv ZSGSRD 29399
17-03-17 18:52:39.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29402
17-03-17 18:52:39.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.588 -07 000000476 INF: FPGA: Recv ZSGSRD 29397
17-03-17 18:52:39.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:39.598 -07 000000438 INF: FPGA: Recv ZPIEZORD 25035
17-03-17 18:52:39.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:52:39.608 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.6 V.
17-03-17 18:52:39.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29401 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29400 (-128.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29396 (-128.4 uncal um), Max = 29410 (-128.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:52:39.608 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29401, posNoise = 9, negNoise = 5
17-03-17 18:52:39.608 -07 000000610 INF: Z Motor: After move to -0.129192, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:39.608 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 107 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:52:39.608 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:39.658 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 18:52:39.658 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:39.658 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.129201613191049. ----------
17-03-17 18:52:39.658 -07 000000610 INF: Cycle	18	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:39.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28045, sync = True, waitForSettling = True)
17-03-17 18:52:39.658 -07 000000610 INF: Z Motor: Moving to -0.128382 mm, started at -0.129202 mm, distance = 0.82 um
17-03-17 18:52:39.658 -07 000000610 INF: FPGA: Xmit ZDACW 28045\n [Z Motor]
17-03-17 18:52:39.658 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:52:39.668 -07 000000610 INF: FPGA: 'ZDACW 28045' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:39.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:39.668 -07 000000551 INF: FPGA: Recv ZDACR 28045
17-03-17 18:52:39.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:39.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.828 -07 000000424 INF: FPGA: Recv ZSGSRD 29275
17-03-17 18:52:39.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:39.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.838 -07 000000438 INF: FPGA: Recv ZSGSRD 29275
17-03-17 18:52:39.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.848 -07 000000012 INF: FPGA: Recv ZSGSRD 29265
17-03-17 18:52:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.858 -07 000000502 INF: FPGA: Recv ZSGSRD 29280
17-03-17 18:52:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.868 -07 000000415 INF: FPGA: Recv ZSGSRD 29272
17-03-17 18:52:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.878 -07 000000382 INF: FPGA: Recv ZSGSRD 29276
17-03-17 18:52:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.888 -07 000000486 INF: FPGA: Recv ZSGSRD 29277
17-03-17 18:52:39.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.898 -07 000000012 INF: FPGA: Recv ZSGSRD 29269
17-03-17 18:52:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.908 -07 000000623 INF: FPGA: Recv ZSGSRD 29274
17-03-17 18:52:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:39.918 -07 000000415 INF: FPGA: Recv ZSGSRD 29272
17-03-17 18:52:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:39.928 -07 000000424 INF: FPGA: Recv ZPIEZORD 24878
17-03-17 18:52:39.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:39.938 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.279 V. Piezo Error = -9.6 V.
17-03-17 18:52:39.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29274 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29274 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29265 (-127.6 uncal um), Max = 29280 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:52:39.938 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29274, posNoise = 6, negNoise = 9
17-03-17 18:52:39.938 -07 000000610 INF: Z Motor: After move to -0.128382, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:39.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:52:39.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:39.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:39.938 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:39.938 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:39.938 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:39.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:39.938 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:39.938 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:39.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:39.938 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:39.938 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:39.938 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:39.948 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:39.948 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:39.948 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:39.948 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:39.958 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:52:39.958 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:52:39.958 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:52:39.958 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:52:39.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28222 150\n [Camera]
17-03-17 18:52:40.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:40.548 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:40.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:40.548 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:40.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:40.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:40.558 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:40.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:52:40.558 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:40.568 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:40.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:52:40.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28222 780
17-03-17 18:52:40.898 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:52:40.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:52:40.938 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:52:40.938 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:40.938 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:40.938 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:52:40.948 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:52:40.948 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:52:40.948 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:40.948 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:40.958 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:52:41.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-17 18:52:41.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-17 18:52:41.088 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:41.088 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-17 18:52:41.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-17 18:52:41.088 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:41.208 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:41.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:52:41.208 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:41.208 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:52:41.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:41.278 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:41.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28222 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:52:41.278 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128949
17-03-17 18:52:41.278 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12895 mm
17-03-17 18:52:41.278 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:41.278 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:52:41.278 -07 000000476 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:52:41.278 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:41.278 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 28169, sync = True, waitForSettling = False)
17-03-17 18:52:41.278 -07 000000415 INF: Z Motor: Moving to -0.128949 mm, started at -0.128386 mm, distance = -0.56 um
17-03-17 18:52:41.288 -07 000000415 INF: FPGA: Xmit ZDACW 28169\n [Z Motor]
17-03-17 18:52:41.288 -07 000000512 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:52:41.288 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:52:41.288 -07 000000476 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:41.288 -07 000000476 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:41.288 -07 000000476 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:52:41.288 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:52:41.298 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:41.298 -07 000000415 INF: FPGA: 'ZDACW 28169' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:52:41.308 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:41.308 -07 000000433 INF: FPGA: Recv ZDACR 28169
17-03-17 18:52:41.318 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:52:41.318 -07 000000415 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:52:41.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:52:41.598 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:52:41.598 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:41.598 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:52:41.598 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:52:41.598 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:41.608 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:41.608 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 18:52:41.608 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:41.608 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 18:52:41.628 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:41.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:41.668 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:52:41.668 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:52:41.708 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:41.708 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:52:41.718 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:41.718 -07 000000476 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:41.718 -07 000000476 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 18:52:41.718 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.183 mm/sec
17-03-17 18:52:42.668 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:42.668 -07 000000512 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:52:42.678 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.678 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:42.698 -07 000000476 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:42.698 -07 000000476 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:52:42.698 -07 000000476 INF: Y Motor: Moved to 73.1768 after 1413 ms (table move)
17-03-17 18:52:42.698 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128949 mm (DAC = 28169)
17-03-17 18:52:42.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.698 -07 000000438 INF: FPGA: Recv ZSGSRD 29358
17-03-17 18:52:42.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:42.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.708 -07 000000431 INF: FPGA: Recv ZSGSRD 29353
17-03-17 18:52:42.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.718 -07 000000502 INF: FPGA: Recv ZSGSRD 29358
17-03-17 18:52:42.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.728 -07 000000561 INF: FPGA: Recv ZSGSRD 29362
17-03-17 18:52:42.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.738 -07 000000551 INF: FPGA: Recv ZSGSRD 29365
17-03-17 18:52:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.748 -07 000000433 INF: FPGA: Recv ZSGSRD 29368
17-03-17 18:52:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.758 -07 000000431 INF: FPGA: Recv ZSGSRD 29366
17-03-17 18:52:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.768 -07 000000502 INF: FPGA: Recv ZSGSRD 29366
17-03-17 18:52:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.778 -07 000000561 INF: FPGA: Recv ZSGSRD 29357
17-03-17 18:52:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:42.788 -07 000000551 INF: FPGA: Recv ZSGSRD 29356
17-03-17 18:52:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:42.798 -07 000000382 INF: FPGA: Recv ZPIEZORD 24998
17-03-17 18:52:42.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.808 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -9.6 V.
17-03-17 18:52:42.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29361 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29360 (-128.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29353 (-128.1 uncal um), Max = 29368 (-128.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:52:42.808 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29361, posNoise = 7, negNoise = 8
17-03-17 18:52:42.808 -07 000000610 INF: Z Motor: After move to -0.128949, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:42.808 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 106 ms (allowed 150 ms), total time = 1521 ms
17-03-17 18:52:42.808 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:42.858 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 18:52:42.858 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:42.858 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.128944644705378. ----------
17-03-17 18:52:42.858 -07 000000610 INF: Cycle	18	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:42.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27992, sync = True, waitForSettling = True)
17-03-17 18:52:42.858 -07 000000610 INF: Z Motor: Moving to -0.128139 mm, started at -0.128945 mm, distance = 0.81 um
17-03-17 18:52:42.858 -07 000000610 INF: FPGA: Xmit ZDACW 27992\n [Z Motor]
17-03-17 18:52:42.858 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:52:42.868 -07 000000610 INF: FPGA: 'ZDACW 27992' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:42.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:42.868 -07 000000502 INF: FPGA: Recv ZDACR 27992
17-03-17 18:52:42.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:42.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.028 -07 000000512 INF: FPGA: Recv ZSGSRD 29232
17-03-17 18:52:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29233
17-03-17 18:52:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.048 -07 000000569 INF: FPGA: Recv ZSGSRD 29234
17-03-17 18:52:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.058 -07 000000438 INF: FPGA: Recv ZSGSRD 29236
17-03-17 18:52:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.068 -07 000000551 INF: FPGA: Recv ZSGSRD 29240
17-03-17 18:52:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.078 -07 000000433 INF: FPGA: Recv ZSGSRD 29241
17-03-17 18:52:43.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.088 -07 000000476 INF: FPGA: Recv ZSGSRD 29236
17-03-17 18:52:43.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.098 -07 000000541 INF: FPGA: Recv ZSGSRD 29228
17-03-17 18:52:43.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.108 -07 000000608 INF: FPGA: Recv ZSGSRD 29237
17-03-17 18:52:43.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:43.118 -07 000000502 INF: FPGA: Recv ZSGSRD 29229
17-03-17 18:52:43.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:43.128 -07 000000462 INF: FPGA: Recv ZPIEZORD 24810
17-03-17 18:52:43.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:43.138 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.7 V.
17-03-17 18:52:43.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29235 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29235 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29228 (-127.3 uncal um), Max = 29241 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:43.138 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29235, posNoise = 6, negNoise = 7
17-03-17 18:52:43.138 -07 000000610 INF: Z Motor: After move to -0.128139, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:43.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:52:43.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:43.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:43.138 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:43.138 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:43.138 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:43.138 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:43.138 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:43.138 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:43.138 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:43.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:43.138 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:43.138 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:43.148 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:43.148 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:43.148 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:43.148 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:43.158 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:52:43.158 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:52:43.158 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:52:43.158 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:43.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28169 150\n [Camera]
17-03-17 18:52:43.368 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:43.758 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:43.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:43.758 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:43.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:43.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:43.768 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:43.768 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:43.768 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:52:43.768 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:43.768 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:52:43.948 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28169 780
17-03-17 18:52:44.098 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:44.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 365 ms.
17-03-17 18:52:44.138 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 366 ms.
17-03-17 18:52:44.138 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:44.138 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:44.138 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:52:44.138 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:52:44.138 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:44.148 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:44.148 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:52:44.148 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:52:44.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-17 18:52:44.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-17 18:52:44.298 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:44.298 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-17 18:52:44.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-17 18:52:44.298 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:44.298 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:44.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:52:44.298 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:44.298 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:52:44.348 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.005817,
17-03-17 18:52:44.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 18:52:44.488 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:44.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28169 150' command took 2 ms to send, 1313 ms to get response, and 1322 ms overall
17-03-17 18:52:44.488 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128579
17-03-17 18:52:44.488 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12858 mm
17-03-17 18:52:44.488 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:44.488 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:52:44.488 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:52:44.488 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:44.488 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28088, sync = True, waitForSettling = False)
17-03-17 18:52:44.488 -07 000000512 INF: Z Motor: Moving to -0.128579 mm, started at -0.128135 mm, distance = -0.44 um
17-03-17 18:52:44.498 -07 000000512 INF: FPGA: Xmit ZDACW 28088\n [Z Motor]
17-03-17 18:52:44.498 -07 000000486 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:52:44.498 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:52:44.498 -07 000000382 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:44.498 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:44.498 -07 000000382 INF: Y Motor: Moving 1353 steps-33
17-03-17 18:52:44.498 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:52:44.508 -07 000000512 INF: FPGA: 'ZDACW 28088' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:52:44.508 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:44.508 -07 000000502 INF: FPGA: Recv ZDACR 28088
17-03-17 18:52:44.518 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:44.518 -07 000000512 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:52:44.518 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:44.678 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:52:44.678 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:52:44.678 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:44.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:52:44.688 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:52:44.688 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:44.688 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:44.688 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:52:44.688 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:44.698 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:52:44.888 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:52:44.898 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 398 ms overall
17-03-17 18:52:44.918 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:44.928 -07 000000512 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:52:44.928 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:52:44.928 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:44.928 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:52:44.928 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.120 mm/sec
17-03-17 18:52:45.878 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:45.878 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:52:45.888 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:45.888 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:45.898 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:45.898 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:45.898 -07 000000382 INF: Y Motor: Moved to 74.0088 after 1407 ms (table move)
17-03-17 18:52:45.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128579 mm (DAC = 28088)
17-03-17 18:52:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.908 -07 000000476 INF: FPGA: Recv ZSGSRD 29308
17-03-17 18:52:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:52:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.908 -07 000000415 INF: FPGA: Recv ZSGSRD 29309
17-03-17 18:52:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29302
17-03-17 18:52:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.928 -07 000000382 INF: FPGA: Recv ZSGSRD 29301
17-03-17 18:52:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.938 -07 000000462 INF: FPGA: Recv ZSGSRD 29302
17-03-17 18:52:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.948 -07 000000541 INF: FPGA: Recv ZSGSRD 29312
17-03-17 18:52:45.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.958 -07 000000415 INF: FPGA: Recv ZSGSRD 29308
17-03-17 18:52:45.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.968 -07 000000502 INF: FPGA: Recv ZSGSRD 29304
17-03-17 18:52:45.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.978 -07 000000512 INF: FPGA: Recv ZSGSRD 29309
17-03-17 18:52:45.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:45.988 -07 000000561 INF: FPGA: Recv ZSGSRD 29304
17-03-17 18:52:45.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:45.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:45.998 -07 000000012 INF: FPGA: Recv ZPIEZORD 24914
17-03-17 18:52:46.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.008 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.6 V.
17-03-17 18:52:46.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29306 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29306 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29301 (-127.8 uncal um), Max = 29312 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:52:46.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29306, posNoise = 6, negNoise = 5
17-03-17 18:52:46.008 -07 000000610 INF: Z Motor: After move to -0.128579, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:46.008 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 103 ms (allowed 150 ms), total time = 1512 ms
17-03-17 18:52:46.008 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:46.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1564 ms
17-03-17 18:52:46.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:46.058 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.128591313037582. ----------
17-03-17 18:52:46.058 -07 000000610 INF: Cycle	18	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:46.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27911, sync = True, waitForSettling = True)
17-03-17 18:52:46.058 -07 000000610 INF: Z Motor: Moving to -0.127768 mm, started at -0.128591 mm, distance = 0.82 um
17-03-17 18:52:46.058 -07 000000610 INF: FPGA: Xmit ZDACW 27911\n [Z Motor]
17-03-17 18:52:46.058 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:52:46.068 -07 000000610 INF: FPGA: 'ZDACW 27911' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:52:46.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:46.068 -07 000000541 INF: FPGA: Recv ZDACR 27911
17-03-17 18:52:46.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:46.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.228 -07 000000433 INF: FPGA: Recv ZSGSRD 29176
17-03-17 18:52:46.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:46.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.238 -07 000000486 INF: FPGA: Recv ZSGSRD 29174
17-03-17 18:52:46.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.248 -07 000000476 INF: FPGA: Recv ZSGSRD 29179
17-03-17 18:52:46.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.258 -07 000000561 INF: FPGA: Recv ZSGSRD 29177
17-03-17 18:52:46.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:46.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29184
17-03-17 18:52:46.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.278 -07 000000438 INF: FPGA: Recv ZSGSRD 29182
17-03-17 18:52:46.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:46.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.288 -07 000000415 INF: FPGA: Recv ZSGSRD 29175
17-03-17 18:52:46.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29178
17-03-17 18:52:46.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.308 -07 000000551 INF: FPGA: Recv ZSGSRD 29177
17-03-17 18:52:46.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:46.318 -07 000000561 INF: FPGA: Recv ZSGSRD 29182
17-03-17 18:52:46.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:46.328 -07 000000438 INF: FPGA: Recv ZPIEZORD 24738
17-03-17 18:52:46.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:46.338 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.7 V.
17-03-17 18:52:46.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29178 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29178 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29174 (-127.0 uncal um), Max = 29184 (-127.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:52:46.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29178, posNoise = 6, negNoise = 4
17-03-17 18:52:46.338 -07 000000610 INF: Z Motor: After move to -0.127768, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:46.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:52:46.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:46.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:46.338 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:46.338 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:46.338 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:46.338 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:46.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:46.338 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:46.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:52:46.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:46.338 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:46.338 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:46.348 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:46.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:46.348 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:52:46.348 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:46.358 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:52:46.358 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:46.358 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:52:46.358 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:52:46.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28088 150\n [Camera]
17-03-17 18:52:46.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:46.628 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:46.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:46.958 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:46.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:46.958 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:46.958 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:46.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 18:52:46.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:46.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:46.958 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:46.958 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:46.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1057230896, 0x0, 418435064) start.
17-03-17 18:52:47.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28088 780
17-03-17 18:52:47.298 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:47.358 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:52:47.358 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:52:47.358 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:47.368 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1057230896, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:52:47.368 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:52:47.368 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:47.368 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:47.368 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:52:47.368 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:47.378 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:52:47.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 18:52:47.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 18:52:47.498 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:47.498 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:47.498 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1092653160, 0x0, 391868352) start.
17-03-17 18:52:47.498 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 18:52:47.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 18:52:47.498 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:47.498 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:47.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1128075424, 0x0, 418435064) start.
17-03-17 18:52:47.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:52:47.688 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:47.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28088 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 18:52:47.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:52:47.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127769013883436. ------
17-03-17 18:52:47.688 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:47.698 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13408 mm
17-03-17 18:52:47.698 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:52:47.698 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:47.698 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29289, sync = True, waitForSettling = False)
17-03-17 18:52:47.698 -07 000000512 INF: Z Motor: Moving to -0.134076 mm, started at -0.127769 mm, distance = -6.31 um
17-03-17 18:52:47.698 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:52:47.698 -07 000000415 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:52:47.708 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:47.708 -07 000000512 INF: FPGA: Xmit ZDACW 29289\n [Z Motor]
17-03-17 18:52:47.708 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:52:47.718 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:47.718 -07 000000512 INF: FPGA: 'ZDACW 29289' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:52:47.718 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:52:47.728 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:52:47.728 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:52:47.728 -07 000000415 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:47.728 -07 000000415 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:52:47.728 -07 000000415 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:52:47.738 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:47.738 -07 000000623 INF: FPGA: Recv ZDACR 29289
17-03-17 18:52:47.748 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:52:47.748 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:52:47.748 -07 000000512 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:52:47.878 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1092653160, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:52:47.878 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:52:47.878 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:47.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1128075424, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:52:47.878 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:52:47.878 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:47.878 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:47.878 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:52:47.878 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:47.888 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:52:47.928 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:52:47.928 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:52:48.118 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:52:48.118 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:52:48.148 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:48.148 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:52:48.158 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:48.158 -07 000000415 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:48.158 -07 000000415 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:52:48.158 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:52:49.108 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:49.108 -07 000000438 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:52:49.118 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.118 -07 000000415 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:49.128 -07 000000415 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:49.128 -07 000000415 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:52:49.128 -07 000000415 INF: Y Motor: Moved to 74.8325 after 1431 ms (table move)
17-03-17 18:52:49.128 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134076 mm (DAC = 29289)
17-03-17 18:52:49.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.138 -07 000000462 INF: FPGA: Recv ZSGSRD 30158
17-03-17 18:52:49.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:52:49.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.138 -07 000000608 INF: FPGA: Recv ZSGSRD 30171
17-03-17 18:52:49.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:52:49.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.148 -07 000000502 INF: FPGA: Recv ZSGSRD 30160
17-03-17 18:52:49.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.158 -07 000000512 INF: FPGA: Recv ZSGSRD 30155
17-03-17 18:52:49.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.168 -07 000000438 INF: FPGA: Recv ZSGSRD 30156
17-03-17 18:52:49.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.178 -07 000000486 INF: FPGA: Recv ZSGSRD 30164
17-03-17 18:52:49.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30165
17-03-17 18:52:49.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.198 -07 000000502 INF: FPGA: Recv ZSGSRD 30159
17-03-17 18:52:49.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30167
17-03-17 18:52:49.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:49.218 -07 000000486 INF: FPGA: Recv ZSGSRD 30164
17-03-17 18:52:49.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.228 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:49.228 -07 000000415 INF: FPGA: Recv ZPIEZORD 26034
17-03-17 18:52:49.238 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:49.238 -07 000000541 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.469 V. Piezo Error = -9.1 V.
17-03-17 18:52:49.238 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30162 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30162 (-133.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30155 (-133.3 uncal um), Max = 30171 (-133.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:49.238 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30162, posNoise = 9, negNoise = 7
17-03-17 18:52:49.238 -07 000000541 INF: Z Motor: After move to -0.134076, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:49.238 -07 000000541 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:52:49.238 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:52:49.288 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:52:49.288 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:52:49.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:49.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:49.288 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:49.288 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:49.298 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:52:49.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:49.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:52:49.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:52:49.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:52:49.298 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:52:49.308 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 18:52:49.308 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:52:49.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:52:49.358 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:52:49.558 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:52:49.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:52:49.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:52:49.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:52:49.598 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:52:49.598 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:52:49.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 18:52:49.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:52:49.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:49.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:52:49.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:52:49.708 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.016692,
17-03-17 18:52:49.798 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:52:49.798 -07 000000541 INF: Autofocus start
17-03-17 18:52:49.798 -07 000000541 INF: MeasureProfile start
17-03-17 18:52:49.798 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:52:49.808 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:52:49.808 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:52:49.928 -07 000000541 INF: MeasureProfile done
17-03-17 18:52:49.928 -07 000000541 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:52:49.928 -07 000000541 INF: Autofocus finished
17-03-17 18:52:50.008 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:52:50.008 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 79 ms to get response, and 203 ms overall
17-03-17 18:52:50.008 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134090438630929. ----------
17-03-17 18:52:50.018 -07 000000610 INF: Cycle	18	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-17 18:52:50.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27813, sync = True, waitForSettling = True)
17-03-17 18:52:50.018 -07 000000610 INF: Z Motor: Moving to -0.127320 mm, started at -0.134090 mm, distance = 6.77 um
17-03-17 18:52:50.018 -07 000000610 INF: FPGA: Xmit ZDACW 27813\n [Z Motor]
17-03-17 18:52:50.018 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:52:50.028 -07 000000610 INF: FPGA: 'ZDACW 27813' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:52:50.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:52:50.028 -07 000000512 INF: FPGA: Recv ZDACR 27813
17-03-17 18:52:50.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:52:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.188 -07 000000433 INF: FPGA: Recv ZSGSRD 29114
17-03-17 18:52:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.198 -07 000000438 INF: FPGA: Recv ZSGSRD 29118
17-03-17 18:52:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.208 -07 000000415 INF: FPGA: Recv ZSGSRD 29109
17-03-17 18:52:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.218 -07 000000569 INF: FPGA: Recv ZSGSRD 29109
17-03-17 18:52:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29107
17-03-17 18:52:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.238 -07 000000431 INF: FPGA: Recv ZSGSRD 29110
17-03-17 18:52:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29109
17-03-17 18:52:50.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.258 -07 000000476 INF: FPGA: Recv ZSGSRD 29103
17-03-17 18:52:50.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.268 -07 000000502 INF: FPGA: Recv ZSGSRD 29113
17-03-17 18:52:50.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:52:50.278 -07 000000382 INF: FPGA: Recv ZSGSRD 29105
17-03-17 18:52:50.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:52:50.288 -07 000000431 INF: FPGA: Recv ZPIEZORD 24633
17-03-17 18:52:50.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:50.298 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.8 V.
17-03-17 18:52:50.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29110 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29109 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29103 (-126.5 uncal um), Max = 29118 (-126.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:52:50.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29110, posNoise = 8, negNoise = 7
17-03-17 18:52:50.298 -07 000000610 INF: Z Motor: After move to -0.127320, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:52:50.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:52:50.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:52:50.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:52:50.298 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:52:50.298 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:52:50.298 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:52:50.298 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:52:50.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:52:50.298 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:52:50.298 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:52:50.298 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:52:50.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:52:50.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:52:50.298 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:52:50.298 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:52:50.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:52:50.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:52:50.318 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:52:50.318 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:52:50.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:52:50.318 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:52:50.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 27990 150\n [Camera]
17-03-17 18:52:50.518 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:52:50.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:52:50.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:52:50.918 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:50.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:52:50.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:52:50.918 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:50.918 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:50.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:52:50.928 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:50.928 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:52:51.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27990 780
17-03-17 18:52:51.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:52:51.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 18:52:51.298 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 18:52:51.298 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:51.298 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 18:52:51.298 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:52:51.298 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:51.298 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:51.298 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:52:51.298 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:52:51.308 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:52:51.448 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:52:51.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:52:51.448 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:52:51.448 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:52:51.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:52:51.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:52:51.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:52:51.458 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:52:51.568 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:52:51.568 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:52:51.638 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 17. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:51.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:52:51.638 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:52:51.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 27990 150' command took 2 ms to send, 1308 ms to get response, and 1320 ms overall
17-03-17 18:52:51.828 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:52:51.828 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:52:51.828 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:51.838 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:52:51.838 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:52:51.838 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:52:51.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:52:51.948 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:52:51.948 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:52:51.948 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:52:51.948 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:52:51.948 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 18:52:51.958 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:52:51.998 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:52:52.008 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 18:52:52.008 -07 000000610 INF: Imaging Cycle 18: ScanTilesCommand Cycle 18 time end. Duration was 139344 ms.
17-03-17 18:52:52.008 -07 000000610 INF: =================== Cycle #18 ===================
17-03-17 18:52:52.008 -07 000000610 INF: ===================  ===================
17-03-17 18:52:52.008 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:52:52.018 -07 000000569 INF: FPGA: Recv EXLED1ADCR 21
17-03-17 18:52:52.018 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:52.018 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 21 --> 0.0 mW (old method), or 1.5 mW (new method). Difference = 1.5 mW
17-03-17 18:52:52.018 -07 000000438 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 18, FrontChillerTemperature: 4.016692, FrontChillerHeatSinkTemperature: 0.464988, AmbientTemperature: 18.83166, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.78689, GreenLEDSensorTemperature: 25.39996, PhotodiodePowerAdcGreen: 21, PhotodiodePowerMwGreen: 1.471122
17-03-17 18:52:52.028 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.