17-03-17 18:52:52.078 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:52:52.078 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:52:52.078 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 18:52:52.078 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:52.078 -07 000000502 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:52:52.088 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:52:52.088 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:52.088 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:52:52.088 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:52:52.088 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:52:52.198 -07 000000502 INF: FPGA: Recv YMVTO 154377 870
17-03-17 18:52:52.198 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 116 ms overall
17-03-17 18:52:52.198 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:52:52.198 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 18:52:52.198 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 18:52:55.068 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.016692,
17-03-17 18:52:55.198 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:52:55.198 -07 000000382 INF: FPGA: Recv YRDPOS 154379
17-03-17 18:52:55.208 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:52:55.208 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:52:55.218 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:52:55.218 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 18:52:55.218 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3139 ms
17-03-17 18:52:55.228 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 60° ===================
17-03-17 18:52:55.228 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:52:55.228 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:52:55.228 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:52:55.238 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:52:55.238 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:52:55.238 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-17 18:52:55.248 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:52:55.248 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 60° ===================
17-03-17 18:52:55.248 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:52:55.248 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:52:55.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:52:55.278 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:52:55.278 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:52:55.278 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:52:55.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:52:55.598 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:52:55.598 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:52:55.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:52:55.668 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:52:55.668 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:52:55.768 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:52:55.768 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:52:55.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:52:55.798 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:52:55.798 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:52:55.798 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:52:55.928 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:52:55.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:52:56.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:52:56.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=189, R2=200, Total=389. Warn if over 250 bubbles per interval.
17-03-17 18:52:59.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:52:59.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:52:59.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:52:59.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:52:59.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:00.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:00.028 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:53:00.028 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:53:00.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:00.188 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:53:00.188 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:53:00.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:00.348 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:53:00.348 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:53:00.348 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:53:00.428 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.05755,
17-03-17 18:53:00.478 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:53:00.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:00.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:00.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:00.968 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:53:00.968 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:53:01.638 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 5
17-03-17 18:53:01.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=5, R2=5, Total=10. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=194, R2=205, Total=399. Warn if over 250 bubbles per interval.
17-03-17 18:53:02.188 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:53:02.188 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:53:02.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:02.208 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:53:02.208 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:53:02.208 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:53:02.338 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:53:02.358 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:53:02.358 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:53:02.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:02.428 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:53:02.428 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:53:02.528 -07 000000610 INF: =================== Cycle #19, Pumping Reagent CMS (4) ===================
17-03-17 18:53:02.528 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:53:02.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:02.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:53:02.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:53:02.558 -07 000000610 INF: =================== Cycle #19, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:53:02.688 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:53:02.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:04.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:04.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:04.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:04.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:04.648 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:53:04.648 -07 000000610 INF: =================== Cycle #19, Pumping Reagent CMS (4) ===================
17-03-17 18:53:04.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:04.808 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:53:04.808 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:53:04.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:04.968 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:53:04.968 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:53:04.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:53:05.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:53:05.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:05.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:05.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:05.588 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:53:05.588 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:53:05.788 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.039839,
17-03-17 18:53:06.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:53:06.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=194, R2=206, Total=400. Warn if over 250 bubbles per interval.
17-03-17 18:53:06.808 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:53:06.808 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:53:06.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:06.828 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:53:06.828 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:53:06.828 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:53:06.978 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:53:06.998 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:53:06.998 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:53:07.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:07.068 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:53:07.068 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:53:07.168 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:53:07.168 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:53:07.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:07.198 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:53:07.198 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:53:07.198 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:53:07.328 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:53:07.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:08.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:08.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:08.268 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:53:08.268 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:53:08.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:08.428 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:53:08.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:53:08.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:08.588 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:53:08.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:53:08.588 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:53:08.718 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:53:08.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:09.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:09.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:09.208 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:53:09.208 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:53:09.208 -07 000000012 INF: WaitCommand(10000) start
17-03-17 18:53:09.208 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:53:09.208 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:53:10.428 -07 000000608 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:53:10.428 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-17 18:53:10.458 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:53:10.458 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:53:10.588 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:53:10.628 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:11.148 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.03576,
17-03-17 18:53:11.638 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:53:11.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=194, R2=206, Total=400. Warn if over 250 bubbles per interval.
17-03-17 18:53:12.158 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:12.188 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:12.608 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:12.638 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:12.638 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:53:12.638 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:53:12.638 -07 000000608 INF: ===================  ===================
17-03-17 18:53:16.508 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.001704,
17-03-17 18:53:16.638 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:53:16.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=194, R2=206, Total=400. Warn if over 250 bubbles per interval.
17-03-17 18:53:19.218 -07 000000012 INF: WaitCommand(10000) end
17-03-17 18:53:19.218 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:53:19.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:53:19.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:19.248 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:53:19.248 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:53:19.248 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:53:19.378 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:53:19.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:21.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:53:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=194, R2=206, Total=400. Warn if over 250 bubbles per interval.
17-03-17 18:53:21.868 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.981281,
17-03-17 18:53:25.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:25.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:25.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:26.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:26.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:26.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:26.638 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 6
17-03-17 18:53:26.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=6, R2=4, Total=10. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=200, R2=210, Total=410. Warn if over 250 bubbles per interval.
17-03-17 18:53:26.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:26.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:27.228 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.978563,
17-03-17 18:53:27.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:27.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:27.378 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:53:27.378 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:53:27.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:27.538 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:53:27.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:53:27.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:27.698 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:53:27.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:53:27.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:53:27.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:53:27.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:28.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:28.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:28.318 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:53:28.318 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:53:29.538 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:53:29.538 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:53:29.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:29.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:53:29.558 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:53:29.558 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:53:29.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:53:29.788 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:53:29.788 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:53:29.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:29.858 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:53:29.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:53:29.958 -07 000000610 INF: =================== Cycle #19, Pumping Reagent IMT (1) ===================
17-03-17 18:53:29.958 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:53:29.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:29.998 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:53:29.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:53:29.998 -07 000000610 INF: =================== Cycle #19, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:53:30.128 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:53:30.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:31.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:31.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:31.638 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:53:31.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=200, R2=211, Total=411. Warn if over 250 bubbles per interval.
17-03-17 18:53:32.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:32.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:32.088 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:53:32.088 -07 000000610 INF: =================== Cycle #19, Pumping Reagent IMT (1) ===================
17-03-17 18:53:32.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:32.248 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:53:32.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:53:32.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:32.408 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:53:32.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:53:32.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:53:32.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:53:32.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:32.588 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.955391,
17-03-17 18:53:32.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:33.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:33.028 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:53:33.028 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:53:34.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:53:34.248 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:53:34.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:34.268 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:53:34.268 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:53:34.268 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:53:34.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:53:34.518 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:53:34.518 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:53:34.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:53:34.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:53:34.588 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:53:34.688 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:53:34.688 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:53:34.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:34.718 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:53:34.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:53:34.718 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:53:34.848 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:53:34.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:53:35.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:35.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:35.788 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:53:35.788 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:53:35.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:35.948 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:53:35.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:53:36.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:53:36.108 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:53:36.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:53:36.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:53:36.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:53:36.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:36.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 18:53:36.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=203, R2=211, Total=414. Warn if over 250 bubbles per interval.
17-03-17 18:53:36.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:53:36.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:53:36.728 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:53:36.728 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:53:36.728 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 65° ===================
17-03-17 18:53:36.728 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:53:36.728 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:53:36.728 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:53:36.738 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:53:36.738 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:53:36.738 -07 000000476 INF: FPGA: Recv TEC2EN 
17-03-17 18:53:36.748 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:53:36.748 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 65° ===================
17-03-17 18:53:36.748 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:53:36.748 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:53:37.948 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.959467,
17-03-17 18:53:41.638 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:53:41.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=204, R2=211, Total=415. Warn if over 250 bubbles per interval.
17-03-17 18:53:43.308 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.973092,
17-03-17 18:53:46.638 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:53:46.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=204, R2=213, Total=417. Warn if over 250 bubbles per interval.
17-03-17 18:53:48.668 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.986717,
17-03-17 18:53:51.638 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 18:53:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=214, Total=419. Warn if over 250 bubbles per interval.
17-03-17 18:53:54.028 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.989471,
17-03-17 18:53:56.638 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:53:56.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=214, Total=419. Warn if over 250 bubbles per interval.
17-03-17 18:53:59.388 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.008536,
17-03-17 18:54:01.638 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:01.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=214, Total=419. Warn if over 250 bubbles per interval.
17-03-17 18:54:04.748 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.020806,
17-03-17 18:54:06.638 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:06.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=214, Total=419. Warn if over 250 bubbles per interval.
17-03-17 18:54:06.758 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:54:06.758 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:54:06.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:54:06.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:06.888 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:54:06.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:54:06.888 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:54:07.018 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:54:07.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:07.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:07.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:07.628 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 18:54:07.628 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:54:07.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:07.788 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:54:07.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:54:07.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:07.948 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:54:07.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:54:07.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:54:08.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:54:08.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:08.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:08.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:08.568 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:54:08.568 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:54:08.568 -07 000000502 INF: WaitCommand(30000) start
17-03-17 18:54:08.568 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:54:08.568 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:54:09.788 -07 000000569 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:54:09.788 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-17 18:54:09.818 -07 000000569 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:54:09.818 -07 000000569 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:54:09.948 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:54:09.988 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:10.108 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.993549,
17-03-17 18:54:11.638 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:54:11.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=215, Total=420. Warn if over 250 bubbles per interval.
17-03-17 18:54:12.328 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:12.358 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:12.778 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:12.808 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:12.808 -07 000000569 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:54:12.808 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:54:12.808 -07 000000569 INF: ===================  ===================
17-03-17 18:54:15.468 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.004458,
17-03-17 18:54:16.638 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:16.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=215, Total=420. Warn if over 250 bubbles per interval.
17-03-17 18:54:20.828 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.037119,
17-03-17 18:54:21.638 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=215, Total=420. Warn if over 250 bubbles per interval.
17-03-17 18:54:26.188 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.019446,
17-03-17 18:54:26.638 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:26.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=215, Total=420. Warn if over 250 bubbles per interval.
17-03-17 18:54:31.548 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.009895,
17-03-17 18:54:31.638 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:31.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=215, Total=420. Warn if over 250 bubbles per interval.
17-03-17 18:54:36.638 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:36.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=205, R2=215, Total=420. Warn if over 250 bubbles per interval.
17-03-17 18:54:36.908 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.989471,
17-03-17 18:54:38.578 -07 000000502 INF: WaitCommand(30000) end
17-03-17 18:54:38.578 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 22° ===================
17-03-17 18:54:38.578 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:54:38.578 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:54:38.578 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:54:38.588 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:54:38.588 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:54:38.588 -07 000000551 INF: FPGA: Recv TEC2EN 
17-03-17 18:54:38.598 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:54:38.598 -07 000000610 INF: =================== Cycle #19, Flow Cell Temp 22° ===================
17-03-17 18:54:38.598 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:54:38.598 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:54:38.598 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:54:38.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:38.638 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:54:38.638 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:54:38.638 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:54:38.768 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:54:38.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:41.638 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 7
17-03-17 18:54:41.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=7, R2=5, Total=12. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=212, R2=220, Total=432. Warn if over 250 bubbles per interval.
17-03-17 18:54:41.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:41.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:42.268 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.971733,
17-03-17 18:54:42.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:42.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:42.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:42.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:42.868 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:54:42.868 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:54:42.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:43.028 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:54:43.028 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:54:43.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:43.188 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:54:43.188 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:54:43.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:54:43.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:54:43.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:43.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:43.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:43.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:54:43.808 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:54:45.028 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:54:45.028 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:54:45.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:54:45.048 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:54:45.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:54:45.048 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:54:45.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:54:45.218 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:54:45.218 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:54:45.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:54:45.288 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:54:45.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:54:45.388 -07 000000610 INF: =================== Cycle #19, Pumping Reagent USM (2) ===================
17-03-17 18:54:45.388 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:54:45.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:45.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:54:45.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:54:45.418 -07 000000610 INF: =================== Cycle #19, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:54:45.548 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:54:45.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:46.638 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 18:54:46.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:54:47.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:47.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:47.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:47.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:47.508 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:54:47.508 -07 000000610 INF: =================== Cycle #19, Pumping Reagent USM (2) ===================
17-03-17 18:54:47.628 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.003063,
17-03-17 18:54:47.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:47.668 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:54:47.668 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:54:47.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:47.828 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:54:47.828 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:54:47.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:54:47.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:54:47.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:48.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:48.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:48.448 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:54:48.448 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:54:49.668 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:54:49.668 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:54:49.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:54:49.688 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:54:49.688 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:54:49.688 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:54:49.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:54:49.858 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:54:49.858 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:54:49.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:54:49.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:54:49.928 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:54:50.028 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:54:50.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:54:50.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:50.058 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:54:50.058 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:54:50.058 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:54:50.188 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:54:50.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:51.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:51.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:51.128 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:54:51.128 -07 000000610 INF: =================== Cycle #19, Pumping Reagent PR2 (3) ===================
17-03-17 18:54:51.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:51.288 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:54:51.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:54:51.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:54:51.448 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:54:51.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:54:51.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:54:51.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:54:51.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:51.638 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:54:52.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:52.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:52.068 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:54:52.068 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:54:52.068 -07 000000431 INF: WaitCommand(10000) start
17-03-17 18:54:52.068 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:54:52.068 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:54:52.988 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.989471,
17-03-17 18:54:53.288 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:54:53.288 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 18:54:53.318 -07 000000551 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:54:53.318 -07 000000551 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:54:53.448 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:54:53.488 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:55.018 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:55.048 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:54:55.468 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 18:54:55.498 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:54:55.498 -07 000000551 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:54:55.498 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:54:55.498 -07 000000551 INF: ===================  ===================
17-03-17 18:54:56.638 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:54:56.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:54:58.348 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.043918,
17-03-17 18:55:01.638 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:01.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:02.078 -07 000000431 INF: WaitCommand(10000) end
17-03-17 18:55:02.078 -07 000000610 INF: =================== Cycle #19, Imaging ===================
17-03-17 18:55:02.078 -07 000000610 INF: Imaging Cycle 19: ScanTilesCommand Cycle 19 time start.
17-03-17 18:55:02.078 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:55:02.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:55:02.108 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:55:02.108 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:55:02.108 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:55:02.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:55:02.428 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:55:02.428 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:55:02.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:55:02.498 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:55:02.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:02.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:02.498 -07 000000551 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:55:02.498 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:02.498 -07 000000551 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:55:02.498 -07 000000608 INF: FPGA: Recv EXLED1ON 
17-03-17 18:55:02.508 -07 000000551 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:55:02.508 -07 000000551 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:55:02.508 -07 000000382 INF: FPGA: Recv EXLED1ADCR 23230
17-03-17 18:55:02.518 -07 000000551 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:02.518 -07 000000551 INF: RedLED: Using Red data: Photodiode ADC 23230 --> 7.5 mW (old method), or 205.9 mW (new method). Difference = 198.4 mW
17-03-17 18:55:02.518 -07 000000551 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:55:02.518 -07 000000433 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:55:02.528 -07 000000551 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:02.528 -07 000000551 INF: RedLED: LED was on for 20 ms
17-03-17 18:55:02.528 -07 000000551 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 18:55:02.528 -07 000000551 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:55:02.528 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:02.528 -07 000000551 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:55:02.528 -07 000000486 INF: FPGA: Recv EXLED2ON 
17-03-17 18:55:02.538 -07 000000551 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:55:02.538 -07 000000551 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:55:02.538 -07 000000431 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 18:55:02.548 -07 000000551 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:02.548 -07 000000551 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 18:55:02.548 -07 000000551 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:55:02.548 -07 000000623 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:55:02.558 -07 000000551 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:02.558 -07 000000551 INF: GreenLED: LED was on for 19 ms
17-03-17 18:55:02.558 -07 000000551 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 18:55:02.558 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:55:02.558 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 18:55:02.568 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:02.568 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:55:03.068 -07 000000608 INF: FPGA: Recv EMOUT
17-03-17 18:55:03.068 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:55:03.068 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:55:03.068 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-17 18:55:03.078 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:03.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:55:03.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127332167457796. ------
17-03-17 18:55:03.078 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:03.078 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17928 mm
17-03-17 18:55:03.078 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:03.078 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:55:03.078 -07 000000415 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 18:55:03.078 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 39164, sync = True, waitForSettling = False)
17-03-17 18:55:03.078 -07 000000438 INF: Z Motor: Moving to -0.179281 mm, started at -0.127332 mm, distance = -51.95 um
17-03-17 18:55:03.078 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:03.088 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:03.088 -07 000000438 INF: FPGA: Xmit ZDACW 39164\n [Z Motor]
17-03-17 18:55:03.088 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:55:03.098 -07 000000438 INF: FPGA: 'ZDACW 39164' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:55:03.098 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:03.098 -07 000000512 INF: FPGA: Recv YRDPOS 154379
17-03-17 18:55:03.108 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:55:03.108 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:55:03.108 -07 000000415 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:03.108 -07 000000415 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:55:03.108 -07 000000415 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:55:03.118 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:03.118 -07 000000462 INF: FPGA: Recv ZDACR 39164
17-03-17 18:55:03.128 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:55:03.128 -07 000000438 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:55:03.128 -07 000000415 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:55:03.308 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:55:03.308 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 18:55:03.708 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.024884,
17-03-17 18:55:04.808 -07 000000502 INF: FPGA: Recv YMVTO 122703 24774
17-03-17 18:55:04.808 -07 000000415 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1702 ms overall
17-03-17 18:55:04.808 -07 000000415 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:55:04.808 -07 000000415 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24774 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:55:04.808 -07 000000415 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 18:55:06.638 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:06.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:07.658 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:07.658 -07 000000486 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:55:07.668 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:07.668 -07 000000415 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:07.688 -07 000000415 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:07.688 -07 000000415 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:55:07.688 -07 000000415 INF: Y Motor: Moved to 59.9116 after 4604 ms
17-03-17 18:55:07.688 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179281 mm (DAC = 39164)
17-03-17 18:55:07.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.688 -07 000000541 INF: FPGA: Recv ZSGSRD 37204
17-03-17 18:55:07.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:07.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.698 -07 000000476 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:55:07.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.708 -07 000000608 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:55:07.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.718 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.718 -07 000000561 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:55:07.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.728 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.728 -07 000000502 INF: FPGA: Recv ZSGSRD 37203
17-03-17 18:55:07.738 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.738 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.738 -07 000000476 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:55:07.748 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.748 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.748 -07 000000551 INF: FPGA: Recv ZSGSRD 37195
17-03-17 18:55:07.758 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.758 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.758 -07 000000561 INF: FPGA: Recv ZSGSRD 37201
17-03-17 18:55:07.768 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.768 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.768 -07 000000502 INF: FPGA: Recv ZSGSRD 37201
17-03-17 18:55:07.778 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.778 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:07.778 -07 000000382 INF: FPGA: Recv ZSGSRD 37200
17-03-17 18:55:07.788 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.788 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:07.788 -07 000000462 INF: FPGA: Recv ZPIEZORD 33552
17-03-17 18:55:07.798 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:07.798 -07 000000424 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.976 V. Piezo Error = -8.1 V.
17-03-17 18:55:07.798 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37199 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37200 (-178.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37195 (-178.4 uncal um), Max = 37204 (-178.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:55:07.798 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37199, posNoise = 5, negNoise = 4
17-03-17 18:55:07.798 -07 000000424 INF: Z Motor: After move to -0.179281, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:07.798 -07 000000424 INF: Z Motor: Settle wait time = 4606 ms, measure time = 107 ms (allowed 150 ms), total time = 4713 ms
17-03-17 18:55:07.798 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:07.848 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 18:55:07.848 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:07.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:07.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:07.848 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:07.848 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:07.848 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:55:07.848 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:07.848 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:07.848 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:55:07.878 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:55:07.878 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:55:07.878 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:55:07.878 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:55:07.888 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:55:07.888 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 18:55:07.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:55:07.938 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:55:08.138 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:55:08.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:55:08.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:55:08.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:55:08.178 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:55:08.178 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:55:08.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:55:08.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:55:08.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:08.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:55:08.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:55:08.378 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:08.378 -07 000000431 INF: Image SNR check: start
17-03-17 18:55:08.378 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:08.388 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:08.388 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:55:08.388 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=71.46]
17-03-17 18:55:08.388 -07 000000431 INF: Autofocus start
17-03-17 18:55:08.388 -07 000000431 INF: MeasureProfile start
17-03-17 18:55:08.408 -07 000000431 INF: MeasureProfile done
17-03-17 18:55:08.408 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:55:08.408 -07 000000431 INF: Autofocus finished
17-03-17 18:55:08.588 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:55:08.588 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:55:08.588 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179297619472501. ----------
17-03-17 18:55:08.588 -07 000000610 INF: Cycle	19	Tile	1	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:08.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37679, sync = True, waitForSettling = True)
17-03-17 18:55:08.598 -07 000000610 INF: Z Motor: Moving to -0.172483 mm, started at -0.179298 mm, distance = 6.81 um
17-03-17 18:55:08.598 -07 000000610 INF: FPGA: Xmit ZDACW 37679\n [Z Motor]
17-03-17 18:55:08.598 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:55:08.608 -07 000000610 INF: FPGA: 'ZDACW 37679' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:08.608 -07 000000551 INF: FPGA: Recv ZDACR 37679
17-03-17 18:55:08.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.768 -07 000000608 INF: FPGA: Recv ZSGSRD 36134
17-03-17 18:55:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.778 -07 000000569 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:55:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.788 -07 000000502 INF: FPGA: Recv ZSGSRD 36148
17-03-17 18:55:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.798 -07 000000551 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:55:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.808 -07 000000512 INF: FPGA: Recv ZSGSRD 36140
17-03-17 18:55:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.818 -07 000000608 INF: FPGA: Recv ZSGSRD 36133
17-03-17 18:55:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.828 -07 000000623 INF: FPGA: Recv ZSGSRD 36145
17-03-17 18:55:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.838 -07 000000415 INF: FPGA: Recv ZSGSRD 36142
17-03-17 18:55:08.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.848 -07 000000551 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:55:08.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:08.858 -07 000000512 INF: FPGA: Recv ZSGSRD 36143
17-03-17 18:55:08.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:08.868 -07 000000012 INF: FPGA: Recv ZPIEZORD 32127
17-03-17 18:55:08.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:08.878 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.9 V.
17-03-17 18:55:08.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36139 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36139 (-171.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36133 (-171.6 uncal um), Max = 36148 (-171.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:55:08.878 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36139, posNoise = 9, negNoise = 6
17-03-17 18:55:08.878 -07 000000610 INF: Z Motor: After move to -0.172483, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:08.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:55:08.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:08.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:08.878 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:08.878 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:08.878 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:08.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:08.878 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:08.878 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:08.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:55:08.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:08.878 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:08.878 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:55:08.888 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:08.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:08.898 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:55:08.898 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:55:08.908 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:55:08.908 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:08.908 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:55:08.908 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:08.918 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:55:08.918 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 18:55:08.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37855 150\n [Camera]
17-03-17 18:55:09.068 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.001704,
17-03-17 18:55:09.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:09.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:09.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:09.518 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:09.518 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:09.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:09.518 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:09.518 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:09.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 18:55:09.518 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:09.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:55:09.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37855 781
17-03-17 18:55:09.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:09.918 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:55:09.918 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:55:09.918 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:09.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:55:09.928 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:55:09.928 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:09.928 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:55:09.928 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:55:09.938 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:55:09.938 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:55:10.048 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:10.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:10.048 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:10.048 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:10.048 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:55:10.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:10.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:10.048 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:10.058 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:10.058 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1150028560, 0x0, 418435064) start.
17-03-17 18:55:10.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:55:10.238 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:10.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37855 150' command took 2 ms to send, 1318 ms to get response, and 1320 ms overall
17-03-17 18:55:10.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:55:10.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.172487954602234. ------
17-03-17 18:55:10.248 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:10.248 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17886 mm
17-03-17 18:55:10.248 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:10.248 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:10.248 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:55:10.248 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:55:10.248 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 39071, sync = True, waitForSettling = False)
17-03-17 18:55:10.258 -07 000000486 INF: Z Motor: Moving to -0.178856 mm, started at -0.172488 mm, distance = -6.37 um
17-03-17 18:55:10.258 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:10.258 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:10.258 -07 000000512 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:55:10.268 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:55:10.268 -07 000000561 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:10.268 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:10.268 -07 000000561 INF: Y Motor: Moving 1330 steps2
17-03-17 18:55:10.268 -07 000000486 INF: FPGA: Xmit ZDACW 39071\n [Z Motor]
17-03-17 18:55:10.268 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:55:10.278 -07 000000486 INF: FPGA: 'ZDACW 39071' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:10.278 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:55:10.288 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:10.298 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:10.298 -07 000000569 INF: FPGA: Recv ZDACR 39071
17-03-17 18:55:10.308 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:55:10.308 -07 000000486 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:55:10.448 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:55:10.448 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:55:10.448 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:10.458 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1150028560, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:55:10.458 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:55:10.458 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:10.458 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:55:10.458 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:55:10.468 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:55:10.468 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:55:10.478 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:55:10.478 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 226 ms overall
17-03-17 18:55:10.658 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:55:10.658 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:55:10.688 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:10.688 -07 000000623 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:55:10.698 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:10.698 -07 000000561 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:10.698 -07 000000561 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:55:10.698 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:55:11.638 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:11.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:11.648 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:11.648 -07 000000433 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:55:11.658 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:11.658 -07 000000561 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:11.678 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:11.678 -07 000000561 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:55:11.678 -07 000000561 INF: Y Motor: Moved to 60.7339 after 1421 ms (table move)
17-03-17 18:55:11.678 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178856 mm (DAC = 39071)
17-03-17 18:55:11.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.678 -07 000000438 INF: FPGA: Recv ZSGSRD 37132
17-03-17 18:55:11.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:11.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.688 -07 000000433 INF: FPGA: Recv ZSGSRD 37132
17-03-17 18:55:11.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.698 -07 000000502 INF: FPGA: Recv ZSGSRD 37128
17-03-17 18:55:11.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.708 -07 000000561 INF: FPGA: Recv ZSGSRD 37124
17-03-17 18:55:11.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.718 -07 000000512 INF: FPGA: Recv ZSGSRD 37131
17-03-17 18:55:11.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.728 -07 000000433 INF: FPGA: Recv ZSGSRD 37132
17-03-17 18:55:11.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.738 -07 000000502 INF: FPGA: Recv ZSGSRD 37136
17-03-17 18:55:11.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.748 -07 000000561 INF: FPGA: Recv ZSGSRD 37131
17-03-17 18:55:11.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.758 -07 000000608 INF: FPGA: Recv ZSGSRD 37129
17-03-17 18:55:11.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.768 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:11.768 -07 000000486 INF: FPGA: Recv ZSGSRD 37132
17-03-17 18:55:11.778 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.778 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:11.778 -07 000000382 INF: FPGA: Recv ZPIEZORD 33462
17-03-17 18:55:11.788 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:11.788 -07 000000551 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -8.1 V.
17-03-17 18:55:11.788 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37131 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37132 (-178.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37124 (-177.9 uncal um), Max = 37136 (-178.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:55:11.788 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37131, posNoise = 5, negNoise = 7
17-03-17 18:55:11.788 -07 000000551 INF: Z Motor: After move to -0.178856, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:11.788 -07 000000551 INF: Z Motor: Settle wait time = 1423 ms, measure time = 107 ms (allowed 150 ms), total time = 1530 ms
17-03-17 18:55:11.788 -07 000000551 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:11.838 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:55:11.838 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:11.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:11.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:11.838 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:11.838 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:11.838 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:55:11.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:11.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:55:11.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:55:11.848 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:55:11.848 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:55:11.858 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:55:11.858 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:55:11.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:55:11.908 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:55:12.098 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:55:12.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:55:12.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:55:12.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 18:55:12.138 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:55:12.148 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:55:12.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:55:12.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:55:12.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:12.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:55:12.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:55:12.248 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:12.248 -07 000000486 INF: Autofocus start
17-03-17 18:55:12.248 -07 000000486 INF: MeasureProfile start
17-03-17 18:55:12.248 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:12.258 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:12.258 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:55:12.258 -07 000000486 INF: MeasureProfile done
17-03-17 18:55:12.258 -07 000000486 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:55:12.258 -07 000000486 INF: Autofocus finished
17-03-17 18:55:12.458 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:55:12.458 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:55:12.458 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.178860773046861. ----------
17-03-17 18:55:12.458 -07 000000610 INF: Cycle	19	Tile	2	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:12.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37622, sync = True, waitForSettling = True)
17-03-17 18:55:12.468 -07 000000610 INF: Z Motor: Moving to -0.172222 mm, started at -0.178861 mm, distance = 6.64 um
17-03-17 18:55:12.468 -07 000000610 INF: FPGA: Xmit ZDACW 37622\n [Z Motor]
17-03-17 18:55:12.468 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:55:12.478 -07 000000610 INF: FPGA: 'ZDACW 37622' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:55:12.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:12.478 -07 000000502 INF: FPGA: Recv ZDACR 37622
17-03-17 18:55:12.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:12.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36094
17-03-17 18:55:12.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:12.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.648 -07 000000382 INF: FPGA: Recv ZSGSRD 36100
17-03-17 18:55:12.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.658 -07 000000486 INF: FPGA: Recv ZSGSRD 36100
17-03-17 18:55:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.668 -07 000000476 INF: FPGA: Recv ZSGSRD 36097
17-03-17 18:55:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36101
17-03-17 18:55:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.688 -07 000000012 INF: FPGA: Recv ZSGSRD 36098
17-03-17 18:55:12.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.698 -07 000000382 INF: FPGA: Recv ZSGSRD 36097
17-03-17 18:55:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.708 -07 000000561 INF: FPGA: Recv ZSGSRD 36106
17-03-17 18:55:12.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.718 -07 000000424 INF: FPGA: Recv ZSGSRD 36099
17-03-17 18:55:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:12.728 -07 000000541 INF: FPGA: Recv ZSGSRD 36099
17-03-17 18:55:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:12.738 -07 000000623 INF: FPGA: Recv ZPIEZORD 32078
17-03-17 18:55:12.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:12.748 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.9 V.
17-03-17 18:55:12.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36099 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36099 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36094 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:55:12.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36099, posNoise = 7, negNoise = 5
17-03-17 18:55:12.748 -07 000000610 INF: Z Motor: After move to -0.172222, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:12.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:55:12.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:12.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:12.748 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:12.748 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:12.748 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:12.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:12.748 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:12.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:12.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:12.748 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:12.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:12.748 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:12.758 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:55:12.758 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:12.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:12.758 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:12.768 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:55:12.768 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:12.768 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:55:12.778 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:12.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37799 150\n [Camera]
17-03-17 18:55:12.978 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:13.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:13.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:13.368 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:13.368 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:13.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:55:13.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:13.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:13.378 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:13.378 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:13.378 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:55:13.568 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37799 781
17-03-17 18:55:13.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:13.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:55:13.768 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:55:13.768 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:13.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:55:13.768 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:55:13.768 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:13.768 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:13.768 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:13.768 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:55:13.778 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:55:13.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:13.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:13.908 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:13.908 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:13.908 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:55:13.908 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:13.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:13.908 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:13.908 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:13.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 18:55:14.098 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:14.098 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:14.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37799 150' command took 2 ms to send, 1313 ms to get response, and 1322 ms overall
17-03-17 18:55:14.098 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172782
17-03-17 18:55:14.098 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17278 mm
17-03-17 18:55:14.098 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:14.098 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:55:14.098 -07 000000415 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:55:14.098 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:14.098 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37744, sync = True, waitForSettling = False)
17-03-17 18:55:14.098 -07 000000541 INF: Z Motor: Moving to -0.172781 mm, started at -0.172231 mm, distance = -0.55 um
17-03-17 18:55:14.108 -07 000000561 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:55:14.108 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:55:14.108 -07 000000415 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:14.108 -07 000000415 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:14.108 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:55:14.118 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:14.128 -07 000000541 INF: FPGA: Xmit ZDACW 37744\n [Z Motor]
17-03-17 18:55:14.128 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:55:14.138 -07 000000541 INF: FPGA: 'ZDACW 37744' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:55:14.138 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:14.138 -07 000000476 INF: FPGA: Recv ZDACR 37744
17-03-17 18:55:14.148 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:14.148 -07 000000541 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:55:14.308 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:55:14.308 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:55:14.308 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:14.308 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:55:14.308 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:55:14.308 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:14.318 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:14.318 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:55:14.318 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:55:14.318 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:55:14.428 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.971733,
17-03-17 18:55:14.488 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:55:14.488 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:55:14.528 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:14.528 -07 000000433 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:55:14.538 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:14.538 -07 000000415 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:14.538 -07 000000415 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:55:14.538 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.173 mm/sec
17-03-17 18:55:15.488 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:15.488 -07 000000541 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:55:15.498 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:15.498 -07 000000415 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:15.518 -07 000000415 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:15.518 -07 000000415 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:15.518 -07 000000415 INF: Y Motor: Moved to 61.5645 after 1412 ms (table move)
17-03-17 18:55:15.518 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172781 mm (DAC = 37744)
17-03-17 18:55:15.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.528 -07 000000431 INF: FPGA: Recv ZSGSRD 36187
17-03-17 18:55:15.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:55:15.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.538 -07 000000608 INF: FPGA: Recv ZSGSRD 36186
17-03-17 18:55:15.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.548 -07 000000382 INF: FPGA: Recv ZSGSRD 36183
17-03-17 18:55:15.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.558 -07 000000476 INF: FPGA: Recv ZSGSRD 36183
17-03-17 18:55:15.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.568 -07 000000561 INF: FPGA: Recv ZSGSRD 36192
17-03-17 18:55:15.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.578 -07 000000431 INF: FPGA: Recv ZSGSRD 36195
17-03-17 18:55:15.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.588 -07 000000623 INF: FPGA: Recv ZSGSRD 36189
17-03-17 18:55:15.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.598 -07 000000502 INF: FPGA: Recv ZSGSRD 36185
17-03-17 18:55:15.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.608 -07 000000438 INF: FPGA: Recv ZSGSRD 36188
17-03-17 18:55:15.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36183
17-03-17 18:55:15.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:15.628 -07 000000476 INF: FPGA: Recv ZPIEZORD 32225
17-03-17 18:55:15.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.638 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.8 V.
17-03-17 18:55:15.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36187 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36186 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36183 (-171.9 uncal um), Max = 36195 (-172.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:55:15.638 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36187, posNoise = 8, negNoise = 4
17-03-17 18:55:15.638 -07 000000610 INF: Z Motor: After move to -0.172781, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:15.638 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 117 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:55:15.638 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:15.678 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 18:55:15.678 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:15.678 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.172796316785039. ----------
17-03-17 18:55:15.678 -07 000000610 INF: Cycle	19	Tile	3	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:15.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37568, sync = True, waitForSettling = True)
17-03-17 18:55:15.678 -07 000000610 INF: Z Motor: Moving to -0.171975 mm, started at -0.172796 mm, distance = 0.82 um
17-03-17 18:55:15.678 -07 000000610 INF: FPGA: Xmit ZDACW 37568\n [Z Motor]
17-03-17 18:55:15.678 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:55:15.688 -07 000000610 INF: FPGA: 'ZDACW 37568' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:15.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:15.688 -07 000000476 INF: FPGA: Recv ZDACR 37568
17-03-17 18:55:15.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:15.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.848 -07 000000502 INF: FPGA: Recv ZSGSRD 36058
17-03-17 18:55:15.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.858 -07 000000512 INF: FPGA: Recv ZSGSRD 36066
17-03-17 18:55:15.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.888 -07 000000502 INF: FPGA: Recv ZSGSRD 36062
17-03-17 18:55:15.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:55:15.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.898 -07 000000438 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:55:15.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.918 -07 000000012 INF: FPGA: Recv ZSGSRD 36051
17-03-17 18:55:15.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:15.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.928 -07 000000608 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:55:15.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.938 -07 000000623 INF: FPGA: Recv ZSGSRD 36058
17-03-17 18:55:15.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.948 -07 000000462 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:55:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.958 -07 000000512 INF: FPGA: Recv ZSGSRD 36064
17-03-17 18:55:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:15.968 -07 000000424 INF: FPGA: Recv ZSGSRD 36064
17-03-17 18:55:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:15.978 -07 000000569 INF: FPGA: Recv ZPIEZORD 32043
17-03-17 18:55:15.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:15.988 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.9 V.
17-03-17 18:55:15.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36061 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36062 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36051 (-171.0 uncal um), Max = 36066 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:55:15.988 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36061, posNoise = 5, negNoise = 10
17-03-17 18:55:15.988 -07 000000610 INF: Z Motor: After move to -0.171975, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:15.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 306 ms)
17-03-17 18:55:15.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:15.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:15.988 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:15.988 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:15.988 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:15.988 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:15.988 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:15.988 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:15.988 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:15.988 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:15.988 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:15.988 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:15.988 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:15.988 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:15.998 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:15.998 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:15.998 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:55:15.998 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:55:15.998 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:55:16.008 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:55:16.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37744 150\n [Camera]
17-03-17 18:55:16.208 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:16.598 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:16.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:16.608 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:16.608 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:16.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 18:55:16.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:16.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:16.608 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:16.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:16.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 18:55:16.638 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:16.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:16.798 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37744 781
17-03-17 18:55:16.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:16.978 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:55:16.978 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:55:16.978 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:16.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:55:16.978 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:55:16.978 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:16.988 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:16.988 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:55:16.988 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:16.998 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:55:17.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:17.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:17.138 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:17.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:17.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:55:17.138 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:17.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:17.138 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:17.138 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:17.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:55:17.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:17.328 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:17.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37744 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-17 18:55:17.328 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172206
17-03-17 18:55:17.328 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17221 mm
17-03-17 18:55:17.328 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:17.338 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:55:17.338 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:55:17.338 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:17.338 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37618, sync = True, waitForSettling = False)
17-03-17 18:55:17.338 -07 000000424 INF: Z Motor: Moving to -0.172204 mm, started at -0.171987 mm, distance = -0.22 um
17-03-17 18:55:17.338 -07 000000608 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:55:17.348 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:17.348 -07 000000424 INF: FPGA: Xmit ZDACW 37618\n [Z Motor]
17-03-17 18:55:17.348 -07 000000382 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:17.348 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:17.348 -07 000000382 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:55:17.348 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:55:17.358 -07 000000424 INF: FPGA: 'ZDACW 37618' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:55:17.358 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:17.368 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:17.368 -07 000000569 INF: FPGA: Recv ZDACR 37618
17-03-17 18:55:17.378 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:17.378 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:55:17.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:55:17.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:55:17.528 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:17.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:55:17.528 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:55:17.528 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:17.528 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:17.528 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:55:17.528 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:17.538 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:55:17.728 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:55:17.728 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:55:17.768 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:17.768 -07 000000608 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:55:17.778 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:17.778 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:17.778 -07 000000382 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:55:17.778 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 18:55:18.728 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:18.728 -07 000000608 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:55:18.738 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.738 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:18.748 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:18.748 -07 000000382 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:18.748 -07 000000382 INF: Y Motor: Moved to 62.3960 after 1418 ms (table move)
17-03-17 18:55:18.758 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172204 mm (DAC = 37618)
17-03-17 18:55:18.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.758 -07 000000608 INF: FPGA: Recv ZSGSRD 36095
17-03-17 18:55:18.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:55:18.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.768 -07 000000476 INF: FPGA: Recv ZSGSRD 36093
17-03-17 18:55:18.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.778 -07 000000424 INF: FPGA: Recv ZSGSRD 36094
17-03-17 18:55:18.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.788 -07 000000424 INF: FPGA: Recv ZSGSRD 36095
17-03-17 18:55:18.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:55:18.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.798 -07 000000541 INF: FPGA: Recv ZSGSRD 36104
17-03-17 18:55:18.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36098
17-03-17 18:55:18.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.818 -07 000000012 INF: FPGA: Recv ZSGSRD 36094
17-03-17 18:55:18.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.828 -07 000000382 INF: FPGA: Recv ZSGSRD 36097
17-03-17 18:55:18.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.838 -07 000000424 INF: FPGA: Recv ZSGSRD 36095
17-03-17 18:55:18.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:18.848 -07 000000551 INF: FPGA: Recv ZSGSRD 36091
17-03-17 18:55:18.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:18.858 -07 000000541 INF: FPGA: Recv ZPIEZORD 32081
17-03-17 18:55:18.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.868 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.9 V.
17-03-17 18:55:18.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36096 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36095 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36091 (-171.3 uncal um), Max = 36104 (-171.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:55:18.868 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36096, posNoise = 8, negNoise = 5
17-03-17 18:55:18.868 -07 000000610 INF: Z Motor: After move to -0.172204, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:18.868 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 109 ms (allowed 150 ms), total time = 1529 ms
17-03-17 18:55:18.868 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:18.918 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:55:18.918 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:18.918 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.172211713480138. ----------
17-03-17 18:55:18.918 -07 000000610 INF: Cycle	19	Tile	4	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:18.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37442, sync = True, waitForSettling = True)
17-03-17 18:55:18.918 -07 000000610 INF: Z Motor: Moving to -0.171398 mm, started at -0.172212 mm, distance = 0.81 um
17-03-17 18:55:18.918 -07 000000610 INF: FPGA: Xmit ZDACW 37442\n [Z Motor]
17-03-17 18:55:18.918 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:55:18.928 -07 000000610 INF: FPGA: 'ZDACW 37442' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:18.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:18.928 -07 000000502 INF: FPGA: Recv ZDACR 37442
17-03-17 18:55:18.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:18.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:19.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35974
17-03-17 18:55:19.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:19.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35974
17-03-17 18:55:19.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.108 -07 000000431 INF: FPGA: Recv ZSGSRD 35973
17-03-17 18:55:19.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.118 -07 000000551 INF: FPGA: Recv ZSGSRD 35975
17-03-17 18:55:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.128 -07 000000502 INF: FPGA: Recv ZSGSRD 35974
17-03-17 18:55:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.138 -07 000000569 INF: FPGA: Recv ZSGSRD 35966
17-03-17 18:55:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.148 -07 000000382 INF: FPGA: Recv ZSGSRD 35967
17-03-17 18:55:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.158 -07 000000415 INF: FPGA: Recv ZSGSRD 35969
17-03-17 18:55:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.168 -07 000000476 INF: FPGA: Recv ZSGSRD 35978
17-03-17 18:55:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:19.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35973
17-03-17 18:55:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:19.188 -07 000000512 INF: FPGA: Recv ZPIEZORD 31902
17-03-17 18:55:19.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:19.198 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -9.0 V.
17-03-17 18:55:19.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35972 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35974 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35966 (-170.5 uncal um), Max = 35978 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:55:19.198 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35972, posNoise = 6, negNoise = 6
17-03-17 18:55:19.198 -07 000000610 INF: Z Motor: After move to -0.171398, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:19.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:55:19.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:19.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:19.198 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:19.198 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:19.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:19.198 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:19.198 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:19.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:19.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:19.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:19.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:19.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:19.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:55:19.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:19.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:55:19.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:19.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:55:19.218 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:55:19.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:55:19.218 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:55:19.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37618 150\n [Camera]
17-03-17 18:55:19.418 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:19.788 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.996267,
17-03-17 18:55:19.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:19.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:19.818 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:19.818 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:19.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:55:19.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:19.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:19.828 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:19.828 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:19.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:55:20.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37618 781
17-03-17 18:55:20.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:20.208 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:55:20.208 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:55:20.208 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:20.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:55:20.218 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:20.218 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:55:20.218 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:55:20.218 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:20.218 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:20.228 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:55:20.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:20.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:20.358 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:20.358 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:20.358 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:55:20.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:20.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:20.358 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:20.358 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:20.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:55:20.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:20.548 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:20.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37618 150' command took 2 ms to send, 1311 ms to get response, and 1320 ms overall
17-03-17 18:55:20.548 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.172044
17-03-17 18:55:20.548 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17204 mm
17-03-17 18:55:20.548 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:20.548 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:55:20.548 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:55:20.548 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:20.548 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37583, sync = True, waitForSettling = False)
17-03-17 18:55:20.548 -07 000000012 INF: Z Motor: Moving to -0.172044 mm, started at -0.171415 mm, distance = -0.63 um
17-03-17 18:55:20.558 -07 000000424 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:55:20.558 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:55:20.558 -07 000000569 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:20.558 -07 000000012 INF: FPGA: Xmit ZDACW 37583\n [Z Motor]
17-03-17 18:55:20.558 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:55:20.558 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:20.558 -07 000000569 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:55:20.568 -07 000000012 INF: FPGA: 'ZDACW 37583' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:55:20.568 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:20.568 -07 000000502 INF: FPGA: Recv ZDACR 37583
17-03-17 18:55:20.578 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:20.578 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:20.578 -07 000000012 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:55:20.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:55:20.738 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:55:20.738 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:20.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:55:20.738 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:55:20.738 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:20.738 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:20.738 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:55:20.738 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:20.748 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:55:20.948 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:55:20.948 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:55:20.988 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:20.988 -07 000000502 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:55:20.998 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:55:20.998 -07 000000569 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:20.998 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:55:20.998 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.123 mm/sec
17-03-17 18:55:21.638 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:21.948 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:21.948 -07 000000476 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:55:21.958 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:21.958 -07 000000569 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:21.978 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:21.978 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:21.978 -07 000000569 INF: Y Motor: Moved to 63.2251 after 1424 ms (table move)
17-03-17 18:55:21.978 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172044 mm (DAC = 37583)
17-03-17 18:55:21.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:21.978 -07 000000415 INF: FPGA: Recv ZSGSRD 36067
17-03-17 18:55:21.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:21.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:21.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36066
17-03-17 18:55:21.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:21.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:21.998 -07 000000433 INF: FPGA: Recv ZSGSRD 36067
17-03-17 18:55:22.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.008 -07 000000561 INF: FPGA: Recv ZSGSRD 36068
17-03-17 18:55:22.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.018 -07 000000569 INF: FPGA: Recv ZSGSRD 36074
17-03-17 18:55:22.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.028 -07 000000541 INF: FPGA: Recv ZSGSRD 36075
17-03-17 18:55:22.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36068
17-03-17 18:55:22.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.048 -07 000000551 INF: FPGA: Recv ZSGSRD 36072
17-03-17 18:55:22.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.058 -07 000000561 INF: FPGA: Recv ZSGSRD 36065
17-03-17 18:55:22.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.068 -07 000000462 INF: FPGA: Recv ZSGSRD 36069
17-03-17 18:55:22.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:22.078 -07 000000012 INF: FPGA: Recv ZPIEZORD 32078
17-03-17 18:55:22.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.088 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.8 V.
17-03-17 18:55:22.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36069 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36068 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36065 (-171.1 uncal um), Max = 36075 (-171.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:55:22.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36069, posNoise = 6, negNoise = 4
17-03-17 18:55:22.088 -07 000000610 INF: Z Motor: After move to -0.172044, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:22.088 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:55:22.088 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:22.138 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:55:22.138 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:22.138 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.172038259752311. ----------
17-03-17 18:55:22.138 -07 000000610 INF: Cycle	19	Tile	5	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:22.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37406, sync = True, waitForSettling = True)
17-03-17 18:55:22.138 -07 000000610 INF: Z Motor: Moving to -0.171234 mm, started at -0.172038 mm, distance = 0.80 um
17-03-17 18:55:22.138 -07 000000610 INF: FPGA: Xmit ZDACW 37406\n [Z Motor]
17-03-17 18:55:22.138 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:55:22.148 -07 000000610 INF: FPGA: 'ZDACW 37406' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:55:22.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:22.148 -07 000000551 INF: FPGA: Recv ZDACR 37406
17-03-17 18:55:22.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:22.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35945
17-03-17 18:55:22.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:22.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.318 -07 000000623 INF: FPGA: Recv ZSGSRD 35944
17-03-17 18:55:22.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.328 -07 000000512 INF: FPGA: Recv ZSGSRD 35944
17-03-17 18:55:22.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.338 -07 000000415 INF: FPGA: Recv ZSGSRD 35948
17-03-17 18:55:22.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.348 -07 000000551 INF: FPGA: Recv ZSGSRD 35947
17-03-17 18:55:22.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.358 -07 000000476 INF: FPGA: Recv ZSGSRD 35950
17-03-17 18:55:22.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.368 -07 000000623 INF: FPGA: Recv ZSGSRD 35941
17-03-17 18:55:22.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.378 -07 000000512 INF: FPGA: Recv ZSGSRD 35940
17-03-17 18:55:22.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35946
17-03-17 18:55:22.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:22.398 -07 000000486 INF: FPGA: Recv ZSGSRD 35944
17-03-17 18:55:22.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:22.408 -07 000000382 INF: FPGA: Recv ZPIEZORD 31881
17-03-17 18:55:22.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:22.418 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -9.0 V.
17-03-17 18:55:22.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35945 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35944 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35940 (-170.3 uncal um), Max = 35950 (-170.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:55:22.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35945, posNoise = 5, negNoise = 5
17-03-17 18:55:22.418 -07 000000610 INF: Z Motor: After move to -0.171234, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:22.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:55:22.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:22.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:22.418 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:22.418 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:22.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:22.418 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:22.418 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:22.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:22.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:22.418 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:22.418 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:22.418 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:22.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:22.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:22.428 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:22.428 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:22.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:55:22.438 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:55:22.438 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:55:22.438 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:55:22.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37583 150\n [Camera]
17-03-17 18:55:22.638 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:55:23.038 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:23.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:23.038 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:23.038 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:23.038 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:55:23.038 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:23.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:23.038 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:23.038 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:23.038 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 18:55:23.228 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37583 781
17-03-17 18:55:23.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:23.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:55:23.418 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:55:23.418 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:23.418 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:55:23.418 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:55:23.418 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:23.428 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:23.428 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:55:23.428 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:23.428 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:55:23.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:23.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:23.568 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:23.568 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:23.568 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 18:55:23.568 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:23.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:23.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:23.578 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:23.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 18:55:23.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:55:23.758 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:23.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37583 150' command took 2 ms to send, 1308 ms to get response, and 1320 ms overall
17-03-17 18:55:23.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:55:23.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.171241657446733. ------
17-03-17 18:55:23.768 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17765 mm
17-03-17 18:55:23.768 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:23.768 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:23.768 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:55:23.768 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:55:23.768 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38809, sync = True, waitForSettling = False)
17-03-17 18:55:23.768 -07 000000012 INF: Z Motor: Moving to -0.177656 mm, started at -0.171242 mm, distance = -6.41 um
17-03-17 18:55:23.768 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:23.778 -07 000000012 INF: FPGA: Xmit ZDACW 38809\n [Z Motor]
17-03-17 18:55:23.778 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:23.778 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:55:23.788 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:23.788 -07 000000012 INF: FPGA: 'ZDACW 38809' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:55:23.788 -07 000000512 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:55:23.798 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:55:23.798 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:55:23.798 -07 000000623 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:23.798 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:23.798 -07 000000623 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:55:23.808 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:23.808 -07 000000438 INF: FPGA: Recv ZDACR 38809
17-03-17 18:55:23.818 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:23.818 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:55:23.818 -07 000000012 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:55:23.948 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:55:23.948 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:55:23.948 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:23.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:55:23.958 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:55:23.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:23.958 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:23.958 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:55:23.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:23.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:55:23.998 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:55:23.998 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 18:55:24.188 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:55:24.188 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:55:24.228 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:24.228 -07 000000512 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:55:24.238 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:24.238 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:24.238 -07 000000623 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:55:24.238 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:55:25.148 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.000345,
17-03-17 18:55:25.188 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:25.188 -07 000000462 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:55:25.198 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:25.198 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:25.208 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:25.208 -07 000000623 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:25.208 -07 000000623 INF: Y Motor: Moved to 64.0576 after 1439 ms (table move)
17-03-17 18:55:25.208 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177656 mm (DAC = 38809)
17-03-17 18:55:25.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.218 -07 000000541 INF: FPGA: Recv ZSGSRD 36946
17-03-17 18:55:25.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:25.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.228 -07 000000012 INF: FPGA: Recv ZSGSRD 36946
17-03-17 18:55:25.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.238 -07 000000623 INF: FPGA: Recv ZSGSRD 36945
17-03-17 18:55:25.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.258 -07 000000623 INF: FPGA: Recv ZSGSRD 36938
17-03-17 18:55:25.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:55:25.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.258 -07 000000476 INF: FPGA: Recv ZSGSRD 36950
17-03-17 18:55:25.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36949
17-03-17 18:55:25.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.278 -07 000000462 INF: FPGA: Recv ZSGSRD 36950
17-03-17 18:55:25.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.288 -07 000000512 INF: FPGA: Recv ZSGSRD 36943
17-03-17 18:55:25.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.298 -07 000000433 INF: FPGA: Recv ZSGSRD 36941
17-03-17 18:55:25.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:25.308 -07 000000438 INF: FPGA: Recv ZSGSRD 36942
17-03-17 18:55:25.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.318 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:25.318 -07 000000476 INF: FPGA: Recv ZPIEZORD 33222
17-03-17 18:55:25.328 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:25.328 -07 000000561 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.922 V. Piezo Error = -8.2 V.
17-03-17 18:55:25.328 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36945 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36946 (-176.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36938 (-176.7 uncal um), Max = 36950 (-176.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:55:25.328 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36945, posNoise = 5, negNoise = 7
17-03-17 18:55:25.328 -07 000000561 INF: Z Motor: After move to -0.177656, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:25.328 -07 000000561 INF: Z Motor: Settle wait time = 1441 ms, measure time = 111 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:55:25.328 -07 000000561 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:25.368 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:55:25.368 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:25.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:25.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:25.368 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:25.368 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:25.368 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:55:25.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:25.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:55:25.368 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:55:25.378 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:55:25.378 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:55:25.388 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:55:25.388 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:55:25.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:55:25.438 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:55:25.638 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:55:25.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:55:25.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:55:25.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:55:25.678 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:55:25.678 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:55:25.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:55:25.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:55:25.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:25.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:55:25.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:55:25.778 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:25.778 -07 000000502 INF: Autofocus start
17-03-17 18:55:25.778 -07 000000502 INF: MeasureProfile start
17-03-17 18:55:25.778 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:25.788 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:25.788 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:55:25.788 -07 000000502 INF: MeasureProfile done
17-03-17 18:55:25.788 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:55:25.788 -07 000000502 INF: Autofocus finished
17-03-17 18:55:25.988 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:55:25.988 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:55:25.988 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.177665869588493. ----------
17-03-17 18:55:25.988 -07 000000610 INF: Cycle	19	Tile	6	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:25.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37341, sync = True, waitForSettling = True)
17-03-17 18:55:25.988 -07 000000610 INF: Z Motor: Moving to -0.170936 mm, started at -0.177666 mm, distance = 6.73 um
17-03-17 18:55:25.998 -07 000000610 INF: FPGA: Xmit ZDACW 37341\n [Z Motor]
17-03-17 18:55:25.998 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:55:26.008 -07 000000610 INF: FPGA: 'ZDACW 37341' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:26.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:26.008 -07 000000623 INF: FPGA: Recv ZDACR 37341
17-03-17 18:55:26.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:26.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.168 -07 000000551 INF: FPGA: Recv ZSGSRD 35899
17-03-17 18:55:26.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.178 -07 000000438 INF: FPGA: Recv ZSGSRD 35900
17-03-17 18:55:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.188 -07 000000569 INF: FPGA: Recv ZSGSRD 35902
17-03-17 18:55:26.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35897
17-03-17 18:55:26.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.208 -07 000000623 INF: FPGA: Recv ZSGSRD 35900
17-03-17 18:55:26.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.218 -07 000000512 INF: FPGA: Recv ZSGSRD 35901
17-03-17 18:55:26.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.228 -07 000000502 INF: FPGA: Recv ZSGSRD 35898
17-03-17 18:55:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35899
17-03-17 18:55:26.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.248 -07 000000486 INF: FPGA: Recv ZSGSRD 35893
17-03-17 18:55:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:26.258 -07 000000012 INF: FPGA: Recv ZSGSRD 35902
17-03-17 18:55:26.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:26.268 -07 000000512 INF: FPGA: Recv ZPIEZORD 31815
17-03-17 18:55:26.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:26.278 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -9.0 V.
17-03-17 18:55:26.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35899 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35900 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35893 (-170.0 uncal um), Max = 35902 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:55:26.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35899, posNoise = 3, negNoise = 6
17-03-17 18:55:26.278 -07 000000610 INF: Z Motor: After move to -0.170936, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:26.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:55:26.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:26.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:26.278 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:26.278 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:26.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:26.278 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:26.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:26.278 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:26.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:26.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:26.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:55:26.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:26.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 6 ms.
17-03-17 18:55:26.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:26.288 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:55:26.288 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:26.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:55:26.298 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:55:26.298 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:55:26.298 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:55:26.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37518 150\n [Camera]
17-03-17 18:55:26.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:26.638 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:26.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:26.898 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:26.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:26.898 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:26.898 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:26.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 18:55:26.898 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:26.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:26.898 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:27.048 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:27.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:55:27.088 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37518 781
17-03-17 18:55:27.238 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:27.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 18:55:27.298 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:55:27.308 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:27.308 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:27.308 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:55:27.418 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:55:27.418 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:55:27.418 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:27.428 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:27.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:27.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:27.428 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:27.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:27.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:27.428 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:27.428 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-17 18:55:27.438 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:27.438 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:55:27.448 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:27.448 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:55:27.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:55:27.618 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:27.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37518 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-17 18:55:27.618 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171511
17-03-17 18:55:27.618 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17151 mm
17-03-17 18:55:27.618 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:27.628 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:55:27.628 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:55:27.628 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:27.628 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37467, sync = True, waitForSettling = False)
17-03-17 18:55:27.628 -07 000000551 INF: Z Motor: Moving to -0.171513 mm, started at -0.170946 mm, distance = -0.57 um
17-03-17 18:55:27.628 -07 000000512 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:55:27.638 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:27.638 -07 000000486 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:27.638 -07 000000551 INF: FPGA: Xmit ZDACW 37467\n [Z Motor]
17-03-17 18:55:27.748 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:55:27.758 -07 000000551 INF: FPGA: 'ZDACW 37467' command took 115 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 18:55:27.758 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:27.758 -07 000000486 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:55:27.758 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:27.758 -07 000000462 INF: FPGA: Recv ZDACR 37467
17-03-17 18:55:27.768 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:27.768 -07 000000551 INF: Z Motor: MoveAbsStepped took 139 ms (did NOT wait for settling yet))
17-03-17 18:55:27.768 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:27.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:55:27.828 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:55:27.828 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:27.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:55:27.828 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:55:27.828 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:27.838 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:27.838 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:27.838 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:55:27.838 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:55:28.138 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:55:28.138 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 18:55:28.168 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:28.178 -07 000000608 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:55:28.178 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:55:28.178 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:28.178 -07 000000486 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:55:28.178 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.835 mm, average velocity = 2.152 mm/sec
17-03-17 18:55:29.128 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:29.128 -07 000000623 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:55:29.138 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:29.138 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:29.158 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:29.158 -07 000000486 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:29.158 -07 000000486 INF: Y Motor: Moved to 64.8794 after 1531 ms (table move)
17-03-17 18:55:29.158 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171513 mm (DAC = 37467)
17-03-17 18:55:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.158 -07 000000561 INF: FPGA: Recv ZSGSRD 35986
17-03-17 18:55:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.168 -07 000000476 INF: FPGA: Recv ZSGSRD 35982
17-03-17 18:55:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35986
17-03-17 18:55:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.188 -07 000000382 INF: FPGA: Recv ZSGSRD 35983
17-03-17 18:55:29.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.198 -07 000000512 INF: FPGA: Recv ZSGSRD 35990
17-03-17 18:55:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.208 -07 000000561 INF: FPGA: Recv ZSGSRD 35995
17-03-17 18:55:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.218 -07 000000415 INF: FPGA: Recv ZSGSRD 35991
17-03-17 18:55:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.228 -07 000000541 INF: FPGA: Recv ZSGSRD 35996
17-03-17 18:55:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.238 -07 000000382 INF: FPGA: Recv ZSGSRD 35988
17-03-17 18:55:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.248 -07 000000512 INF: FPGA: Recv ZSGSRD 35988
17-03-17 18:55:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:29.258 -07 000000561 INF: FPGA: Recv ZPIEZORD 31949
17-03-17 18:55:29.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.268 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.9 V.
17-03-17 18:55:29.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35988 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35988 (-170.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35982 (-170.6 uncal um), Max = 35996 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:55:29.268 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35988, posNoise = 8, negNoise = 6
17-03-17 18:55:29.268 -07 000000610 INF: Z Motor: After move to -0.171513, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:29.268 -07 000000610 INF: Z Motor: Settle wait time = 1533 ms, measure time = 108 ms (allowed 150 ms), total time = 1641 ms
17-03-17 18:55:29.268 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:29.318 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1691 ms
17-03-17 18:55:29.318 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:29.318 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.171517898568828. ----------
17-03-17 18:55:29.318 -07 000000610 INF: Cycle	19	Tile	7	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:29.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37290, sync = True, waitForSettling = True)
17-03-17 18:55:29.318 -07 000000610 INF: Z Motor: Moving to -0.170703 mm, started at -0.171518 mm, distance = 0.82 um
17-03-17 18:55:29.318 -07 000000610 INF: FPGA: Xmit ZDACW 37290\n [Z Motor]
17-03-17 18:55:29.318 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:55:29.328 -07 000000610 INF: FPGA: 'ZDACW 37290' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:29.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:29.328 -07 000000433 INF: FPGA: Recv ZDACR 37290
17-03-17 18:55:29.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.488 -07 000000569 INF: FPGA: Recv ZSGSRD 35860
17-03-17 18:55:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.498 -07 000000476 INF: FPGA: Recv ZSGSRD 35864
17-03-17 18:55:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.508 -07 000000462 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:55:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.518 -07 000000012 INF: FPGA: Recv ZSGSRD 35866
17-03-17 18:55:29.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35870
17-03-17 18:55:29.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.538 -07 000000431 INF: FPGA: Recv ZSGSRD 35860
17-03-17 18:55:29.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.548 -07 000000415 INF: FPGA: Recv ZSGSRD 35869
17-03-17 18:55:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.558 -07 000000462 INF: FPGA: Recv ZSGSRD 35861
17-03-17 18:55:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.568 -07 000000561 INF: FPGA: Recv ZSGSRD 35859
17-03-17 18:55:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:29.578 -07 000000512 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:55:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:29.588 -07 000000569 INF: FPGA: Recv ZPIEZORD 31802
17-03-17 18:55:29.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:29.598 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -9.0 V.
17-03-17 18:55:29.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35864 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35863 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35859 (-169.8 uncal um), Max = 35870 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:55:29.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35864, posNoise = 6, negNoise = 5
17-03-17 18:55:29.598 -07 000000610 INF: Z Motor: After move to -0.170703, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:29.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:55:29.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:29.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:29.598 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:29.598 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:29.598 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:29.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:29.598 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:29.598 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:29.598 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:29.598 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:29.598 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:29.598 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:29.608 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:29.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:29.608 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:29.608 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:29.618 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 18:55:29.618 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:29.618 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:55:29.618 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:29.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37467 150\n [Camera]
17-03-17 18:55:29.818 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:30.218 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:30.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:30.218 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:30.218 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:30.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:30.228 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:30.228 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:30.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:55:30.228 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:30.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:55:30.408 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37467 781
17-03-17 18:55:30.508 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.014009,
17-03-17 18:55:30.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:30.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:55:30.598 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:55:30.598 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:30.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:55:30.598 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:55:30.598 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:30.608 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:30.608 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:55:30.608 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:30.608 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:55:30.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:30.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:30.748 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:30.758 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:30.758 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:55:30.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:30.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:30.758 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:30.758 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:30.758 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) start.
17-03-17 18:55:30.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 18:55:30.948 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:30.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37467 150' command took 2 ms to send, 1312 ms to get response, and 1322 ms overall
17-03-17 18:55:30.948 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.171267
17-03-17 18:55:30.948 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17127 mm
17-03-17 18:55:30.948 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:30.948 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:55:30.948 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:55:30.948 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:30.948 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37413, sync = True, waitForSettling = False)
17-03-17 18:55:30.948 -07 000000561 INF: Z Motor: Moving to -0.171266 mm, started at -0.170721 mm, distance = -0.54 um
17-03-17 18:55:30.958 -07 000000561 INF: FPGA: Xmit ZDACW 37413\n [Z Motor]
17-03-17 18:55:30.958 -07 000000512 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:55:30.958 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:55:30.958 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:30.958 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:30.958 -07 000000438 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:55:30.958 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:55:30.968 -07 000000561 INF: FPGA: 'ZDACW 37413' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:30.968 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:30.978 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:30.978 -07 000000608 INF: FPGA: Recv ZDACR 37413
17-03-17 18:55:30.988 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:30.988 -07 000000561 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 18:55:31.138 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:55:31.138 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:55:31.138 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:31.138 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:31.138 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:55:31.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:55:31.138 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:55:31.138 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:31.148 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:31.148 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:55:31.338 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:55:31.338 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-17 18:55:31.378 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:31.378 -07 000000424 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:55:31.388 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:31.388 -07 000000438 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:31.388 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:55:31.388 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 18:55:31.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:31.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:32.338 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:32.338 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:55:32.348 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:32.348 -07 000000438 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:32.368 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:32.368 -07 000000438 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:32.368 -07 000000438 INF: Y Motor: Moved to 65.7148 after 1411 ms (table move)
17-03-17 18:55:32.368 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171266 mm (DAC = 37413)
17-03-17 18:55:32.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.368 -07 000000608 INF: FPGA: Recv ZSGSRD 35943
17-03-17 18:55:32.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:32.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.378 -07 000000512 INF: FPGA: Recv ZSGSRD 35948
17-03-17 18:55:32.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35948
17-03-17 18:55:32.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.398 -07 000000486 INF: FPGA: Recv ZSGSRD 35949
17-03-17 18:55:32.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.408 -07 000000551 INF: FPGA: Recv ZSGSRD 35953
17-03-17 18:55:32.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.418 -07 000000502 INF: FPGA: Recv ZSGSRD 35956
17-03-17 18:55:32.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.428 -07 000000561 INF: FPGA: Recv ZSGSRD 35954
17-03-17 18:55:32.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.438 -07 000000541 INF: FPGA: Recv ZSGSRD 35948
17-03-17 18:55:32.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.448 -07 000000382 INF: FPGA: Recv ZSGSRD 35945
17-03-17 18:55:32.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.458 -07 000000431 INF: FPGA: Recv ZSGSRD 35951
17-03-17 18:55:32.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:32.468 -07 000000502 INF: FPGA: Recv ZPIEZORD 31918
17-03-17 18:55:32.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.478 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -8.9 V.
17-03-17 18:55:32.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35950 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35948 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35943 (-170.4 uncal um), Max = 35956 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:55:32.478 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35950, posNoise = 6, negNoise = 7
17-03-17 18:55:32.478 -07 000000610 INF: Z Motor: After move to -0.171266, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:32.478 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 106 ms (allowed 150 ms), total time = 1521 ms
17-03-17 18:55:32.478 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:32.528 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:55:32.528 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:32.528 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.171273778507441. ----------
17-03-17 18:55:32.528 -07 000000610 INF: Cycle	19	Tile	8	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:32.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37237, sync = True, waitForSettling = True)
17-03-17 18:55:32.528 -07 000000610 INF: Z Motor: Moving to -0.170460 mm, started at -0.171274 mm, distance = 0.81 um
17-03-17 18:55:32.528 -07 000000610 INF: FPGA: Xmit ZDACW 37237\n [Z Motor]
17-03-17 18:55:32.528 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:55:32.538 -07 000000610 INF: FPGA: 'ZDACW 37237' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:32.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:32.538 -07 000000438 INF: FPGA: Recv ZDACR 37237
17-03-17 18:55:32.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35828
17-03-17 18:55:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.708 -07 000000476 INF: FPGA: Recv ZSGSRD 35829
17-03-17 18:55:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.718 -07 000000502 INF: FPGA: Recv ZSGSRD 35823
17-03-17 18:55:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35827
17-03-17 18:55:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.738 -07 000000569 INF: FPGA: Recv ZSGSRD 35826
17-03-17 18:55:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.748 -07 000000486 INF: FPGA: Recv ZSGSRD 35830
17-03-17 18:55:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.758 -07 000000512 INF: FPGA: Recv ZSGSRD 35822
17-03-17 18:55:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.768 -07 000000623 INF: FPGA: Recv ZSGSRD 35822
17-03-17 18:55:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.778 -07 000000502 INF: FPGA: Recv ZSGSRD 35823
17-03-17 18:55:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:32.788 -07 000000433 INF: FPGA: Recv ZSGSRD 35826
17-03-17 18:55:32.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:32.798 -07 000000486 INF: FPGA: Recv ZPIEZORD 31729
17-03-17 18:55:32.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:32.808 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.0 V.
17-03-17 18:55:32.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35826 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35826 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35822 (-169.6 uncal um), Max = 35830 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:55:32.808 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35826, posNoise = 4, negNoise = 4
17-03-17 18:55:32.808 -07 000000610 INF: Z Motor: After move to -0.170460, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:32.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:55:32.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:32.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:32.808 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:32.808 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:32.808 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:32.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:32.808 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:32.808 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:32.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:32.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:32.808 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:55:32.808 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:32.818 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 18:55:32.818 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:32.818 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:32.818 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:32.828 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:55:32.828 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:32.828 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:55:32.828 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:32.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37413 150\n [Camera]
17-03-17 18:55:33.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:33.428 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:33.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:33.428 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:33.428 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:33.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:55:33.428 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:33.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:33.428 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:33.428 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:33.428 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:55:33.618 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37413 781
17-03-17 18:55:33.768 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:33.828 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:55:33.828 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:55:33.828 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:33.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:55:33.828 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:55:33.828 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:33.828 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:33.828 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:55:33.828 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:33.838 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:55:33.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:33.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:33.958 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:33.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:33.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:55:33.968 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:33.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:33.968 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:33.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:33.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 18:55:34.148 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:34.158 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:34.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37413 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:55:34.158 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170734
17-03-17 18:55:34.158 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17073 mm
17-03-17 18:55:34.158 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:34.158 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:55:34.158 -07 000000608 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:55:34.158 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:34.158 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37297, sync = True, waitForSettling = False)
17-03-17 18:55:34.158 -07 000000569 INF: Z Motor: Moving to -0.170735 mm, started at -0.170477 mm, distance = -0.26 um
17-03-17 18:55:34.158 -07 000000561 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:55:34.168 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:34.168 -07 000000569 INF: FPGA: Xmit ZDACW 37297\n [Z Motor]
17-03-17 18:55:34.168 -07 000000608 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:34.168 -07 000000608 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:34.168 -07 000000608 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:55:34.168 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:55:34.178 -07 000000569 INF: FPGA: 'ZDACW 37297' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:55:34.178 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:34.178 -07 000000551 INF: FPGA: Recv ZDACR 37297
17-03-17 18:55:34.188 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:34.188 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:34.188 -07 000000569 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 18:55:34.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:55:34.348 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:55:34.348 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:34.348 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:55:34.348 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:55:34.348 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:34.348 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:34.348 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:55:34.348 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:34.358 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:55:34.558 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:55:34.558 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 18:55:34.598 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:34.598 -07 000000502 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:55:34.608 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:34.608 -07 000000608 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:34.608 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:55:34.608 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.105 mm/sec
17-03-17 18:55:35.558 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:35.558 -07 000000382 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:55:35.568 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:35.568 -07 000000608 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:35.588 -07 000000608 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:35.588 -07 000000608 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:55:35.588 -07 000000608 INF: Y Motor: Moved to 66.5400 after 1427 ms (table move)
17-03-17 18:55:35.588 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170735 mm (DAC = 37297)
17-03-17 18:55:35.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.588 -07 000000424 INF: FPGA: Recv ZSGSRD 35862
17-03-17 18:55:35.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:35.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.598 -07 000000502 INF: FPGA: Recv ZSGSRD 35866
17-03-17 18:55:35.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35868
17-03-17 18:55:35.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.618 -07 000000462 INF: FPGA: Recv ZSGSRD 35876
17-03-17 18:55:35.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.628 -07 000000486 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:55:35.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.638 -07 000000382 INF: FPGA: Recv ZSGSRD 35872
17-03-17 18:55:35.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.648 -07 000000502 INF: FPGA: Recv ZSGSRD 35870
17-03-17 18:55:35.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.658 -07 000000569 INF: FPGA: Recv ZSGSRD 35861
17-03-17 18:55:35.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.668 -07 000000561 INF: FPGA: Recv ZSGSRD 35869
17-03-17 18:55:35.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35863
17-03-17 18:55:35.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:35.688 -07 000000382 INF: FPGA: Recv ZPIEZORD 31800
17-03-17 18:55:35.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.698 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -9.0 V.
17-03-17 18:55:35.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35867 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35861 (-169.8 uncal um), Max = 35876 (-169.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:55:35.698 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 9, negNoise = 6
17-03-17 18:55:35.698 -07 000000610 INF: Z Motor: After move to -0.170735, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:35.698 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:55:35.698 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:35.748 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 18:55:35.748 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:35.748 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.170740568899675. ----------
17-03-17 18:55:35.748 -07 000000610 INF: Cycle	19	Tile	9	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:35.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37120, sync = True, waitForSettling = True)
17-03-17 18:55:35.748 -07 000000610 INF: Z Motor: Moving to -0.169924 mm, started at -0.170741 mm, distance = 0.82 um
17-03-17 18:55:35.748 -07 000000610 INF: FPGA: Xmit ZDACW 37120\n [Z Motor]
17-03-17 18:55:35.748 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:55:35.758 -07 000000610 INF: FPGA: 'ZDACW 37120' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:55:35.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:35.758 -07 000000476 INF: FPGA: Recv ZDACR 37120
17-03-17 18:55:35.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:35.868 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.990831,
17-03-17 18:55:35.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.918 -07 000000462 INF: FPGA: Recv ZSGSRD 35746
17-03-17 18:55:35.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.928 -07 000000561 INF: FPGA: Recv ZSGSRD 35747
17-03-17 18:55:35.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.938 -07 000000551 INF: FPGA: Recv ZSGSRD 35742
17-03-17 18:55:35.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35740
17-03-17 18:55:35.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.958 -07 000000486 INF: FPGA: Recv ZSGSRD 35740
17-03-17 18:55:35.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.968 -07 000000462 INF: FPGA: Recv ZSGSRD 35740
17-03-17 18:55:35.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.978 -07 000000561 INF: FPGA: Recv ZSGSRD 35739
17-03-17 18:55:35.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.988 -07 000000424 INF: FPGA: Recv ZSGSRD 35734
17-03-17 18:55:35.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:35.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:35.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35748
17-03-17 18:55:36.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:36.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:36.008 -07 000000486 INF: FPGA: Recv ZSGSRD 35743
17-03-17 18:55:36.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:36.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:36.018 -07 000000623 INF: FPGA: Recv ZPIEZORD 31614
17-03-17 18:55:36.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:36.028 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.1 V.
17-03-17 18:55:36.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35742 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35741 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35734 (-169.0 uncal um), Max = 35748 (-169.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:55:36.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35742, posNoise = 6, negNoise = 8
17-03-17 18:55:36.028 -07 000000610 INF: Z Motor: After move to -0.169924, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:36.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:55:36.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:36.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:36.028 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:36.028 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:36.028 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:36.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:36.028 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:36.028 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:36.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:36.028 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:36.028 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:36.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:36.038 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:36.038 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:36.038 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:55:36.038 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:36.048 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:55:36.048 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:55:36.048 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:55:36.048 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:55:36.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37297 150\n [Camera]
17-03-17 18:55:36.258 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:36.638 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:36.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:36.648 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:36.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:36.648 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:36.648 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:36.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:55:36.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:36.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:36.658 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:36.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:36.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:55:36.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37297 781
17-03-17 18:55:36.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:37.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:55:37.028 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:55:37.028 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:37.028 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:55:37.038 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:55:37.038 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:37.038 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:37.038 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:55:37.038 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:37.048 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:55:37.178 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:37.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:37.188 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:37.188 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:37.188 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:55:37.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:37.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:37.188 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:37.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:37.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:55:37.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:55:37.378 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:37.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37297 150' command took 2 ms to send, 1311 ms to get response, and 1320 ms overall
17-03-17 18:55:37.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:55:37.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.169937542381955. ------
17-03-17 18:55:37.378 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:37.378 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17673 mm
17-03-17 18:55:37.378 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:37.378 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:37.388 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:55:37.388 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:55:37.388 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38606, sync = True, waitForSettling = False)
17-03-17 18:55:37.388 -07 000000476 INF: Z Motor: Moving to -0.176727 mm, started at -0.169938 mm, distance = -6.79 um
17-03-17 18:55:37.388 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:55:37.388 -07 000000551 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:55:37.398 -07 000000476 INF: FPGA: Xmit ZDACW 38606\n [Z Motor]
17-03-17 18:55:37.398 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:55:37.408 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:37.408 -07 000000476 INF: FPGA: 'ZDACW 38606' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:55:37.408 -07 000000433 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:55:37.418 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:55:37.418 -07 000000551 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:37.418 -07 000000551 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:37.418 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:55:37.418 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:37.418 -07 000000431 INF: FPGA: Recv ZDACR 38606
17-03-17 18:55:37.428 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:37.428 -07 000000476 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:55:37.428 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:37.568 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:55:37.568 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:55:37.568 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:37.568 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:55:37.568 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:55:37.568 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:37.568 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:37.568 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:55:37.568 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:37.578 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:55:37.588 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:55:37.588 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:55:37.798 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:55:37.798 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 18:55:37.838 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:37.838 -07 000000569 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:55:37.848 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:55:37.848 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:37.848 -07 000000551 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:55:37.848 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.172 mm/sec
17-03-17 18:55:38.798 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:38.798 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:55:38.808 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:38.808 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:38.828 -07 000000551 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:38.828 -07 000000551 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:38.828 -07 000000551 INF: Y Motor: Moved to 67.3726 after 1439 ms (table move)
17-03-17 18:55:38.828 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176727 mm (DAC = 38606)
17-03-17 18:55:38.828 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.828 -07 000000486 INF: FPGA: Recv ZSGSRD 36800
17-03-17 18:55:38.838 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:38.838 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36800
17-03-17 18:55:38.848 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.848 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36801
17-03-17 18:55:38.858 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.858 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.858 -07 000000512 INF: FPGA: Recv ZSGSRD 36802
17-03-17 18:55:38.868 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.868 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.868 -07 000000569 INF: FPGA: Recv ZSGSRD 36805
17-03-17 18:55:38.878 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.878 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.878 -07 000000433 INF: FPGA: Recv ZSGSRD 36801
17-03-17 18:55:38.888 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.888 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.888 -07 000000502 INF: FPGA: Recv ZSGSRD 36800
17-03-17 18:55:38.898 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.898 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.898 -07 000000561 INF: FPGA: Recv ZSGSRD 36795
17-03-17 18:55:38.908 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.908 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.908 -07 000000382 INF: FPGA: Recv ZSGSRD 36796
17-03-17 18:55:38.918 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.918 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:38.918 -07 000000433 INF: FPGA: Recv ZSGSRD 36798
17-03-17 18:55:38.928 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.928 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:38.928 -07 000000462 INF: FPGA: Recv ZPIEZORD 33022
17-03-17 18:55:38.938 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:38.938 -07 000000424 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.4 V.
17-03-17 18:55:38.938 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36800 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36800 (-175.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36795 (-175.8 uncal um), Max = 36805 (-175.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:55:38.938 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36800, posNoise = 5, negNoise = 5
17-03-17 18:55:38.938 -07 000000424 INF: Z Motor: After move to -0.176727, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:38.938 -07 000000424 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:55:38.938 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:38.988 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:55:38.988 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:38.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:38.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:38.988 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:38.988 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:38.988 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:55:38.988 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:38.988 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:38.988 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:55:38.998 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:55:38.998 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:55:39.008 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:55:39.008 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:55:39.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:55:39.058 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:55:39.258 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:55:39.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:55:39.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:55:39.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:55:39.298 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:55:39.298 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:55:39.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:55:39.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:55:39.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:39.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:55:39.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:55:39.398 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:39.398 -07 000000623 INF: Autofocus start
17-03-17 18:55:39.398 -07 000000623 INF: MeasureProfile start
17-03-17 18:55:39.398 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:39.408 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:39.408 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:55:39.408 -07 000000623 INF: MeasureProfile done
17-03-17 18:55:39.408 -07 000000623 INF: X=-32  Z correction [um]=-0.2344
17-03-17 18:55:39.408 -07 000000623 INF: Autofocus finished
17-03-17 18:55:39.608 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:55:39.608 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:55:39.608 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176734358827938. ----------
17-03-17 18:55:39.608 -07 000000610 INF: Cycle	19	Tile	10	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:39.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37068, sync = True, waitForSettling = True)
17-03-17 18:55:39.618 -07 000000610 INF: Z Motor: Moving to -0.169686 mm, started at -0.176734 mm, distance = 7.05 um
17-03-17 18:55:39.618 -07 000000610 INF: FPGA: Xmit ZDACW 37068\n [Z Motor]
17-03-17 18:55:39.618 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:55:39.628 -07 000000610 INF: FPGA: 'ZDACW 37068' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:39.628 -07 000000486 INF: FPGA: Recv ZDACR 37068
17-03-17 18:55:39.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:39.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.788 -07 000000502 INF: FPGA: Recv ZSGSRD 35706
17-03-17 18:55:39.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:39.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.798 -07 000000623 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:55:39.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.808 -07 000000415 INF: FPGA: Recv ZSGSRD 35700
17-03-17 18:55:39.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.818 -07 000000512 INF: FPGA: Recv ZSGSRD 35703
17-03-17 18:55:39.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.828 -07 000000382 INF: FPGA: Recv ZSGSRD 35708
17-03-17 18:55:39.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.838 -07 000000433 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:55:39.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.848 -07 000000569 INF: FPGA: Recv ZSGSRD 35702
17-03-17 18:55:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.858 -07 000000012 INF: FPGA: Recv ZSGSRD 35708
17-03-17 18:55:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.868 -07 000000551 INF: FPGA: Recv ZSGSRD 35706
17-03-17 18:55:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:39.878 -07 000000476 INF: FPGA: Recv ZSGSRD 35703
17-03-17 18:55:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:39.888 -07 000000623 INF: FPGA: Recv ZPIEZORD 31597
17-03-17 18:55:39.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:39.898 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -9.1 V.
17-03-17 18:55:39.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35704 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35703 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35700 (-168.8 uncal um), Max = 35708 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:55:39.898 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35704, posNoise = 4, negNoise = 4
17-03-17 18:55:39.898 -07 000000610 INF: Z Motor: After move to -0.169686, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:39.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:55:39.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:39.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:39.898 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:39.898 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:39.898 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:39.898 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:39.898 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:39.898 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:39.898 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:39.898 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:39.898 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:39.898 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:39.898 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:55:39.908 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:39.908 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:39.908 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:39.908 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:55:39.908 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:55:39.908 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:55:39.908 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:55:39.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37244 150\n [Camera]
17-03-17 18:55:40.118 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:40.518 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:40.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:40.518 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:40.518 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:40.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:55:40.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:40.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:40.518 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:40.518 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:40.518 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:55:40.708 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37244 781
17-03-17 18:55:40.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:40.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:55:40.898 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:55:40.898 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:40.898 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:55:40.898 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:55:40.898 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:40.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:40.908 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:55:40.908 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:55:40.918 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:55:41.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-17 18:55:41.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-17 18:55:41.048 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:41.048 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:41.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:55:41.048 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-17 18:55:41.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-17 18:55:41.048 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:41.048 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:41.048 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:55:41.228 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.962185,
17-03-17 18:55:41.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:41.238 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:41.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37244 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-17 18:55:41.238 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169491
17-03-17 18:55:41.248 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16949 mm
17-03-17 18:55:41.248 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:41.248 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:55:41.248 -07 000000424 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:55:41.248 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37025, sync = True, waitForSettling = False)
17-03-17 18:55:41.248 -07 000000476 INF: Z Motor: Moving to -0.169490 mm, started at -0.169693 mm, distance = 0.20 um
17-03-17 18:55:41.268 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:41.268 -07 000000551 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:55:41.278 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:55:41.278 -07 000000424 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:41.278 -07 000000476 INF: FPGA: Xmit ZDACW 37025\n [Z Motor]
17-03-17 18:55:41.278 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:55:41.278 -07 000000424 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:41.278 -07 000000424 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:55:41.288 -07 000000476 INF: FPGA: 'ZDACW 37025' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 18:55:41.288 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:41.298 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:41.298 -07 000000433 INF: FPGA: Recv ZDACR 37025
17-03-17 18:55:41.308 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:41.308 -07 000000476 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:55:41.428 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:55:41.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:55:41.428 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:55:41.428 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:41.428 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:55:41.428 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:41.438 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:41.438 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:55:41.438 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:55:41.438 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:55:41.638 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:41.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:41.668 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:55:41.668 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 386 ms overall
17-03-17 18:55:41.698 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:41.698 -07 000000569 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:55:41.708 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:41.708 -07 000000424 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:41.708 -07 000000424 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:55:41.708 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.171 mm/sec
17-03-17 18:55:42.658 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:42.658 -07 000000382 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:55:42.668 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:42.668 -07 000000424 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:42.688 -07 000000424 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:42.688 -07 000000424 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:42.688 -07 000000424 INF: Y Motor: Moved to 68.2056 after 1437 ms (table move)
17-03-17 18:55:42.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169490 mm (DAC = 37025)
17-03-17 18:55:42.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.698 -07 000000462 INF: FPGA: Recv ZSGSRD 35668
17-03-17 18:55:42.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:55:42.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.708 -07 000000486 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:55:42.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:42.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35678
17-03-17 18:55:42.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.738 -07 000000012 INF: FPGA: Recv ZSGSRD 35672
17-03-17 18:55:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.758 -07 000000512 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:55:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:55:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.778 -07 000000433 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:55:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.788 -07 000000438 INF: FPGA: Recv ZSGSRD 35669
17-03-17 18:55:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35670
17-03-17 18:55:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:42.808 -07 000000551 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:55:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:42.818 -07 000000012 INF: FPGA: Recv ZPIEZORD 31575
17-03-17 18:55:42.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.828 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.0 V.
17-03-17 18:55:42.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35674 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35674 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35668 (-168.6 uncal um), Max = 35680 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:55:42.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35674, posNoise = 6, negNoise = 6
17-03-17 18:55:42.828 -07 000000610 INF: Z Motor: After move to -0.169490, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:42.828 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 137 ms (allowed 150 ms), total time = 1575 ms
17-03-17 18:55:42.828 -07 000000610 INF: Z Motor: Waiting extra 13 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:42.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:55:42.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:42.848 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.169500695956315. ----------
17-03-17 18:55:42.848 -07 000000610 INF: Cycle	19	Tile	11	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:42.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36849, sync = True, waitForSettling = True)
17-03-17 18:55:42.848 -07 000000610 INF: Z Motor: Moving to -0.168684 mm, started at -0.169501 mm, distance = 0.82 um
17-03-17 18:55:42.848 -07 000000610 INF: FPGA: Xmit ZDACW 36849\n [Z Motor]
17-03-17 18:55:42.848 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:55:42.858 -07 000000610 INF: FPGA: 'ZDACW 36849' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:55:42.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:42.858 -07 000000512 INF: FPGA: Recv ZDACR 36849
17-03-17 18:55:42.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:42.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.018 -07 000000569 INF: FPGA: Recv ZSGSRD 35550
17-03-17 18:55:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.028 -07 000000486 INF: FPGA: Recv ZSGSRD 35547
17-03-17 18:55:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.038 -07 000000551 INF: FPGA: Recv ZSGSRD 35547
17-03-17 18:55:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.048 -07 000000382 INF: FPGA: Recv ZSGSRD 35548
17-03-17 18:55:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.058 -07 000000561 INF: FPGA: Recv ZSGSRD 35553
17-03-17 18:55:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.068 -07 000000569 INF: FPGA: Recv ZSGSRD 35550
17-03-17 18:55:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.078 -07 000000486 INF: FPGA: Recv ZSGSRD 35547
17-03-17 18:55:43.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.088 -07 000000551 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:55:43.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.098 -07 000000623 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:55:43.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:43.108 -07 000000561 INF: FPGA: Recv ZSGSRD 35548
17-03-17 18:55:43.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:43.118 -07 000000476 INF: FPGA: Recv ZPIEZORD 31406
17-03-17 18:55:43.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:43.128 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.1 V.
17-03-17 18:55:43.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35548 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35548 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35546 (-167.8 uncal um), Max = 35553 (-167.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:55:43.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35548, posNoise = 5, negNoise = 2
17-03-17 18:55:43.128 -07 000000610 INF: Z Motor: After move to -0.168684, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:43.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:55:43.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:43.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:43.128 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:43.128 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:43.128 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:43.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:43.128 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:43.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:43.128 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:55:43.128 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:43.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:55:43.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:43.138 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:43.138 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:43.138 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:43.138 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:43.148 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:55:43.148 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:55:43.148 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:55:43.148 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:55:43.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37025 150\n [Camera]
17-03-17 18:55:43.348 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:43.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-17 18:55:43.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-17 18:55:43.748 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:43.748 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:43.748 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:55:43.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-17 18:55:43.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-17 18:55:43.748 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:43.748 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:43.748 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 18:55:43.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37025 781
17-03-17 18:55:44.088 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 18:55:44.128 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:55:44.128 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:55:44.128 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:44.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:55:44.128 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:55:44.128 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:44.128 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:44.128 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:55:44.128 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:44.138 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:55:44.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:44.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:44.278 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:44.278 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:44.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 18:55:44.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:44.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:44.288 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:44.288 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:44.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 18:55:44.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:44.468 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:44.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37025 150' command took 2 ms to send, 1308 ms to get response, and 1320 ms overall
17-03-17 18:55:44.468 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169352
17-03-17 18:55:44.478 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16935 mm
17-03-17 18:55:44.478 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:44.478 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 36995, sync = True, waitForSettling = False)
17-03-17 18:55:44.478 -07 000000486 INF: Z Motor: Moving to -0.169352 mm, started at -0.168691 mm, distance = -0.66 um
17-03-17 18:55:44.478 -07 000000486 INF: FPGA: Xmit ZDACW 36995\n [Z Motor]
17-03-17 18:55:44.478 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:55:44.478 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:55:44.478 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:55:44.488 -07 000000486 INF: FPGA: 'ZDACW 36995' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:44.488 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:44.488 -07 000000476 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:55:44.498 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:55:44.498 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:44.498 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:44.498 -07 000000608 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:55:44.498 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:44.498 -07 000000438 INF: FPGA: Recv ZDACR 36995
17-03-17 18:55:44.508 -07 000000486 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:44.508 -07 000000486 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 18:55:44.508 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:44.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:55:44.668 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:55:44.668 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:44.668 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:55:44.668 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:55:44.668 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:44.678 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:55:44.678 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:44.678 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:55:44.678 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:55:44.878 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:55:44.878 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 18:55:44.918 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:44.928 -07 000000623 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:55:44.928 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:55:44.928 -07 000000608 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:44.928 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:55:44.928 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 18:55:45.878 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:45.878 -07 000000512 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:55:45.888 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:45.888 -07 000000608 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:45.908 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:45.908 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:45.908 -07 000000608 INF: Y Motor: Moved to 69.0278 after 1428 ms (table move)
17-03-17 18:55:45.908 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169352 mm (DAC = 36995)
17-03-17 18:55:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.908 -07 000000476 INF: FPGA: Recv ZSGSRD 35656
17-03-17 18:55:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.918 -07 000000462 INF: FPGA: Recv ZSGSRD 35649
17-03-17 18:55:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.928 -07 000000569 INF: FPGA: Recv ZSGSRD 35653
17-03-17 18:55:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35650
17-03-17 18:55:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.948 -07 000000512 INF: FPGA: Recv ZSGSRD 35656
17-03-17 18:55:45.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.958 -07 000000433 INF: FPGA: Recv ZSGSRD 35657
17-03-17 18:55:45.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.968 -07 000000431 INF: FPGA: Recv ZSGSRD 35649
17-03-17 18:55:45.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35652
17-03-17 18:55:45.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35648
17-03-17 18:55:45.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:45.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:45.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35655
17-03-17 18:55:46.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:46.008 -07 000000382 INF: FPGA: Recv ZPIEZORD 31585
17-03-17 18:55:46.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.018 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -9.0 V.
17-03-17 18:55:46.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35652 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35652 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35648 (-168.5 uncal um), Max = 35657 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:55:46.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35652, posNoise = 5, negNoise = 4
17-03-17 18:55:46.018 -07 000000610 INF: Z Motor: After move to -0.169352, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:46.018 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:55:46.018 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:46.068 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 18:55:46.068 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:46.068 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.169359363289197. ----------
17-03-17 18:55:46.068 -07 000000610 INF: Cycle	19	Tile	12	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:46.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36818, sync = True, waitForSettling = True)
17-03-17 18:55:46.068 -07 000000610 INF: Z Motor: Moving to -0.168542 mm, started at -0.169359 mm, distance = 0.82 um
17-03-17 18:55:46.068 -07 000000610 INF: FPGA: Xmit ZDACW 36818\n [Z Motor]
17-03-17 18:55:46.068 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:55:46.078 -07 000000610 INF: FPGA: 'ZDACW 36818' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:46.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:46.078 -07 000000561 INF: FPGA: Recv ZDACR 36818
17-03-17 18:55:46.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:46.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.238 -07 000000512 INF: FPGA: Recv ZSGSRD 35526
17-03-17 18:55:46.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:46.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.248 -07 000000415 INF: FPGA: Recv ZSGSRD 35519
17-03-17 18:55:46.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35527
17-03-17 18:55:46.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.278 -07 000000382 INF: FPGA: Recv ZSGSRD 35531
17-03-17 18:55:46.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:46.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.288 -07 000000512 INF: FPGA: Recv ZSGSRD 35522
17-03-17 18:55:46.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35522
17-03-17 18:55:46.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.308 -07 000000623 INF: FPGA: Recv ZSGSRD 35528
17-03-17 18:55:46.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35530
17-03-17 18:55:46.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.328 -07 000000424 INF: FPGA: Recv ZSGSRD 35528
17-03-17 18:55:46.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:46.338 -07 000000512 INF: FPGA: Recv ZSGSRD 35526
17-03-17 18:55:46.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:46.348 -07 000000502 INF: FPGA: Recv ZPIEZORD 31390
17-03-17 18:55:46.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:46.358 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.1 V.
17-03-17 18:55:46.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35526 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35526 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35519 (-167.6 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:55:46.358 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35526, posNoise = 5, negNoise = 7
17-03-17 18:55:46.358 -07 000000610 INF: Z Motor: After move to -0.168542, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:46.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 18:55:46.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:46.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:46.358 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:46.358 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:46.358 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:46.358 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:46.358 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:46.358 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:46.358 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:46.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:46.358 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:46.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:46.368 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:46.368 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:46.368 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:46.368 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:46.378 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:55:46.378 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:46.378 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:55:46.378 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:55:46.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36995 150\n [Camera]
17-03-17 18:55:46.588 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.966297,
17-03-17 18:55:46.588 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:46.638 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:46.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:46.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:46.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:46.978 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:46.978 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:46.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 18:55:46.988 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:46.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:46.988 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:46.988 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:46.988 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 18:55:47.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36995 781
17-03-17 18:55:47.328 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:47.358 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:55:47.358 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:55:47.358 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:47.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:55:47.358 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:55:47.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:47.368 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:47.368 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:55:47.368 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:47.378 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:55:47.518 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:47.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:47.518 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:47.518 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:47.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 18:55:47.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:47.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:47.518 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:47.518 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:47.518 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 18:55:47.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:47.708 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:47.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36995 150' command took 2 ms to send, 1312 ms to get response, and 1321 ms overall
17-03-17 18:55:47.708 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168864
17-03-17 18:55:47.708 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16886 mm
17-03-17 18:55:47.708 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:47.708 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:55:47.708 -07 000000623 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:55:47.708 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:47.708 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 36888, sync = True, waitForSettling = False)
17-03-17 18:55:47.708 -07 000000502 INF: Z Motor: Moving to -0.168862 mm, started at -0.168550 mm, distance = -0.31 um
17-03-17 18:55:47.718 -07 000000502 INF: FPGA: Xmit ZDACW 36888\n [Z Motor]
17-03-17 18:55:47.718 -07 000000512 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:55:47.718 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:55:47.718 -07 000000623 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:47.718 -07 000000623 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:47.718 -07 000000623 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:55:47.718 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:55:47.728 -07 000000502 INF: FPGA: 'ZDACW 36888' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:47.728 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:47.728 -07 000000512 INF: FPGA: Recv ZDACR 36888
17-03-17 18:55:47.738 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:47.738 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:47.738 -07 000000502 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:55:47.898 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:55:47.898 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:55:47.898 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:47.898 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:55:47.898 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:55:47.898 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:47.908 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:47.908 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:47.908 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:55:47.908 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:55:48.108 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:55:48.108 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:55:48.148 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:48.148 -07 000000561 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:55:48.158 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:48.158 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:48.158 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:55:48.158 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-17 18:55:49.108 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:49.108 -07 000000512 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:55:49.118 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.118 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:49.138 -07 000000623 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:49.138 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:49.138 -07 000000623 INF: Y Motor: Moved to 69.8638 after 1421 ms (table move)
17-03-17 18:55:49.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168862 mm (DAC = 36888)
17-03-17 18:55:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35588
17-03-17 18:55:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.148 -07 000000541 INF: FPGA: Recv ZSGSRD 35565
17-03-17 18:55:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.158 -07 000000415 INF: FPGA: Recv ZSGSRD 35572
17-03-17 18:55:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35576
17-03-17 18:55:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.178 -07 000000382 INF: FPGA: Recv ZSGSRD 35576
17-03-17 18:55:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35578
17-03-17 18:55:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.198 -07 000000541 INF: FPGA: Recv ZSGSRD 35577
17-03-17 18:55:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.208 -07 000000462 INF: FPGA: Recv ZSGSRD 35572
17-03-17 18:55:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.218 -07 000000561 INF: FPGA: Recv ZSGSRD 35572
17-03-17 18:55:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.228 -07 000000382 INF: FPGA: Recv ZSGSRD 35573
17-03-17 18:55:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:49.238 -07 000000431 INF: FPGA: Recv ZPIEZORD 31455
17-03-17 18:55:49.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.248 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.1 V.
17-03-17 18:55:49.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35575 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35574 (-168.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 35565 (-167.9 uncal um), Max = 35588 (-168.1 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:55:49.248 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35575, posNoise = 13, negNoise = 10
17-03-17 18:55:49.248 -07 000000610 INF: Z Motor: After move to -0.168862, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:49.248 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 110 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:55:49.248 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:49.288 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 18:55:49.288 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:49.288 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.168864698954281. ----------
17-03-17 18:55:49.288 -07 000000610 INF: Cycle	19	Tile	13	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:49.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36712, sync = True, waitForSettling = True)
17-03-17 18:55:49.288 -07 000000610 INF: Z Motor: Moving to -0.168057 mm, started at -0.168865 mm, distance = 0.81 um
17-03-17 18:55:49.288 -07 000000610 INF: FPGA: Xmit ZDACW 36712\n [Z Motor]
17-03-17 18:55:49.288 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:55:49.298 -07 000000610 INF: FPGA: 'ZDACW 36712' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:49.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:49.298 -07 000000486 INF: FPGA: Recv ZDACR 36712
17-03-17 18:55:49.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.458 -07 000000424 INF: FPGA: Recv ZSGSRD 35449
17-03-17 18:55:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.468 -07 000000476 INF: FPGA: Recv ZSGSRD 35452
17-03-17 18:55:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.478 -07 000000512 INF: FPGA: Recv ZSGSRD 35455
17-03-17 18:55:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.488 -07 000000431 INF: FPGA: Recv ZSGSRD 35451
17-03-17 18:55:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.498 -07 000000623 INF: FPGA: Recv ZSGSRD 35453
17-03-17 18:55:49.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.508 -07 000000608 INF: FPGA: Recv ZSGSRD 35452
17-03-17 18:55:49.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.518 -07 000000433 INF: FPGA: Recv ZSGSRD 35453
17-03-17 18:55:49.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.528 -07 000000551 INF: FPGA: Recv ZSGSRD 35448
17-03-17 18:55:49.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.538 -07 000000431 INF: FPGA: Recv ZSGSRD 35445
17-03-17 18:55:49.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:49.548 -07 000000623 INF: FPGA: Recv ZSGSRD 35446
17-03-17 18:55:49.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:49.558 -07 000000561 INF: FPGA: Recv ZPIEZORD 31288
17-03-17 18:55:49.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:49.568 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.2 V.
17-03-17 18:55:49.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35450 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35452 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35445 (-167.2 uncal um), Max = 35455 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:55:49.568 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35450, posNoise = 5, negNoise = 5
17-03-17 18:55:49.568 -07 000000610 INF: Z Motor: After move to -0.168057, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:49.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:55:49.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:49.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:49.568 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:49.568 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:49.568 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:49.568 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:49.568 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:49.568 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:49.568 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:49.568 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:49.568 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:49.568 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:49.578 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:49.578 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:49.578 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:55:49.578 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:49.588 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:55:49.588 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:55:49.588 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:55:49.588 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:55:49.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36888 150\n [Camera]
17-03-17 18:55:49.788 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:50.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:50.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:50.188 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:50.188 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:50.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 18:55:50.198 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:50.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:50.198 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:50.198 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:50.198 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-17 18:55:50.378 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36888 781
17-03-17 18:55:50.528 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:50.578 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:55:50.578 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:55:50.578 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:50.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:55:50.578 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:55:50.578 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:50.578 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:50.578 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:55:50.588 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:50.588 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:55:50.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:50.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:50.718 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:50.718 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:50.728 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 18:55:50.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:50.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:50.728 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:50.728 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:50.728 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) start.
17-03-17 18:55:50.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:55:50.918 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:50.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36888 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:55:51.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:55:51.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.168061672436561. ------
17-03-17 18:55:51.078 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:51.078 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17446 mm
17-03-17 18:55:51.078 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:51.078 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:55:51.088 -07 000000438 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:55:51.088 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:51.088 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:55:51.088 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:51.088 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38110, sync = True, waitForSettling = False)
17-03-17 18:55:51.088 -07 000000462 INF: Z Motor: Moving to -0.174456 mm, started at -0.168062 mm, distance = -6.39 um
17-03-17 18:55:51.088 -07 000000561 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:55:51.098 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:51.098 -07 000000462 INF: FPGA: Xmit ZDACW 38110\n [Z Motor]
17-03-17 18:55:51.098 -07 000000438 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:51.098 -07 000000438 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:51.098 -07 000000438 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:55:51.098 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:55:51.108 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:55:51.108 -07 000000462 INF: FPGA: 'ZDACW 38110' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:55:51.118 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:51.128 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:51.128 -07 000000476 INF: FPGA: Recv ZDACR 38110
17-03-17 18:55:51.138 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:55:51.138 -07 000000462 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:55:51.138 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 410 ms.
17-03-17 18:55:51.138 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:55:51.138 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:51.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) end. Duration was 409 ms.
17-03-17 18:55:51.138 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:55:51.138 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:51.138 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:55:51.138 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 18:55:51.138 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:51.148 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 423 ms.
17-03-17 18:55:51.308 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:55:51.308 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:55:51.488 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:55:51.488 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:55:51.528 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:51.528 -07 000000424 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:55:51.538 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:55:51.538 -07 000000438 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:51.538 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:55:51.538 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 18:55:51.638 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:51.948 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.96762,
17-03-17 18:55:52.488 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:52.488 -07 000000382 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:55:52.498 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:52.498 -07 000000438 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:52.518 -07 000000438 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:52.518 -07 000000438 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:52.518 -07 000000438 INF: Y Motor: Moved to 70.6890 after 1430 ms (table move)
17-03-17 18:55:52.518 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174456 mm (DAC = 38110)
17-03-17 18:55:52.518 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.518 -07 000000476 INF: FPGA: Recv ZSGSRD 36442
17-03-17 18:55:52.528 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:52.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.528 -07 000000012 INF: FPGA: Recv ZSGSRD 36440
17-03-17 18:55:52.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.538 -07 000000462 INF: FPGA: Recv ZSGSRD 36442
17-03-17 18:55:52.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.548 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.548 -07 000000623 INF: FPGA: Recv ZSGSRD 36442
17-03-17 18:55:52.558 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.558 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.558 -07 000000561 INF: FPGA: Recv ZSGSRD 36447
17-03-17 18:55:52.568 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.568 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.568 -07 000000486 INF: FPGA: Recv ZSGSRD 36451
17-03-17 18:55:52.578 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.578 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.578 -07 000000476 INF: FPGA: Recv ZSGSRD 36449
17-03-17 18:55:52.588 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.588 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.588 -07 000000433 INF: FPGA: Recv ZSGSRD 36449
17-03-17 18:55:52.598 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.598 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.598 -07 000000561 INF: FPGA: Recv ZSGSRD 36446
17-03-17 18:55:52.608 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:52.608 -07 000000431 INF: FPGA: Recv ZSGSRD 36438
17-03-17 18:55:52.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.618 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:52.618 -07 000000569 INF: FPGA: Recv ZPIEZORD 32609
17-03-17 18:55:52.628 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:52.628 -07 000000502 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.815 V. Piezo Error = -8.5 V.
17-03-17 18:55:52.628 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36445 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36444 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36438 (-173.5 uncal um), Max = 36451 (-173.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:55:52.628 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36445, posNoise = 6, negNoise = 7
17-03-17 18:55:52.628 -07 000000502 INF: Z Motor: After move to -0.174456, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:52.628 -07 000000502 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:55:52.628 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:52.678 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:55:52.678 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:52.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:52.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:52.678 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:52.678 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:52.678 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:55:52.678 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:52.678 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:52.678 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:55:52.688 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:55:52.688 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:55:52.698 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:55:52.698 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:55:52.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:55:52.748 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:55:52.948 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:55:52.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:55:52.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:55:52.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:55:52.988 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:55:52.988 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:55:52.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:55:53.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:55:53.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:53.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:55:53.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:55:53.088 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:55:53.088 -07 000000012 INF: Autofocus start
17-03-17 18:55:53.088 -07 000000012 INF: MeasureProfile start
17-03-17 18:55:53.088 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:55:53.098 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:53.098 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:55:53.098 -07 000000012 INF: MeasureProfile done
17-03-17 18:55:53.098 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:55:53.098 -07 000000012 INF: Autofocus finished
17-03-17 18:55:53.298 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:55:53.298 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:55:53.298 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174453763517613. ----------
17-03-17 18:55:53.298 -07 000000610 INF: Cycle	19	Tile	14	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:53.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36625, sync = True, waitForSettling = True)
17-03-17 18:55:53.308 -07 000000610 INF: Z Motor: Moving to -0.167659 mm, started at -0.174454 mm, distance = 6.80 um
17-03-17 18:55:53.308 -07 000000610 INF: FPGA: Xmit ZDACW 36625\n [Z Motor]
17-03-17 18:55:53.308 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:55:53.318 -07 000000610 INF: FPGA: 'ZDACW 36625' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:55:53.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:53.318 -07 000000512 INF: FPGA: Recv ZDACR 36625
17-03-17 18:55:53.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:53.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.478 -07 000000012 INF: FPGA: Recv ZSGSRD 35395
17-03-17 18:55:53.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:53.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.488 -07 000000382 INF: FPGA: Recv ZSGSRD 35390
17-03-17 18:55:53.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.498 -07 000000433 INF: FPGA: Recv ZSGSRD 35389
17-03-17 18:55:53.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.508 -07 000000561 INF: FPGA: Recv ZSGSRD 35385
17-03-17 18:55:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.518 -07 000000623 INF: FPGA: Recv ZSGSRD 35389
17-03-17 18:55:53.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.528 -07 000000012 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:55:53.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.538 -07 000000541 INF: FPGA: Recv ZSGSRD 35381
17-03-17 18:55:53.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.548 -07 000000551 INF: FPGA: Recv ZSGSRD 35385
17-03-17 18:55:53.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.558 -07 000000561 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:55:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:53.568 -07 000000438 INF: FPGA: Recv ZSGSRD 35388
17-03-17 18:55:53.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:53.578 -07 000000012 INF: FPGA: Recv ZPIEZORD 31165
17-03-17 18:55:53.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:53.588 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.3 V.
17-03-17 18:55:53.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35388 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35388 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35381 (-166.7 uncal um), Max = 35395 (-166.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:55:53.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35388, posNoise = 7, negNoise = 7
17-03-17 18:55:53.588 -07 000000610 INF: Z Motor: After move to -0.167659, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:53.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:55:53.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:53.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:53.588 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:53.588 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:53.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:53.588 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:53.588 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:53.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:53.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:53.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:53.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:53.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:53.598 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:53.598 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:53.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:55:53.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:53.608 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:55:53.608 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:55:53.608 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:55:53.608 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:55:53.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36802 150\n [Camera]
17-03-17 18:55:53.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:54.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:54.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:54.208 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:54.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:54.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:54.208 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:54.208 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:54.208 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:55:54.218 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:54.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:55:54.398 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36802 781
17-03-17 18:55:54.548 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:54.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:55:54.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:55:54.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:54.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:54.588 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:55:54.588 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:55:54.588 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:55:54.588 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:54.588 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:54.598 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:55:54.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:54.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:54.738 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:54.858 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:54.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:54.858 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:54.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:55:54.858 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:54.858 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:54.858 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:55:54.928 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:55:54.928 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:54.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36802 150' command took 2 ms to send, 1316 ms to get response, and 1321 ms overall
17-03-17 18:55:54.928 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168310
17-03-17 18:55:54.928 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16831 mm
17-03-17 18:55:54.928 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:54.938 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:55:54.938 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:55:54.938 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:54.938 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 36767, sync = True, waitForSettling = False)
17-03-17 18:55:54.938 -07 000000486 INF: Z Motor: Moving to -0.168309 mm, started at -0.167663 mm, distance = -0.65 um
17-03-17 18:55:54.938 -07 000000431 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:55:54.948 -07 000000486 INF: FPGA: Xmit ZDACW 36767\n [Z Motor]
17-03-17 18:55:54.948 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:55:54.948 -07 000000462 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:54.948 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:55:54.948 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:54.948 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:55:54.958 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:54.958 -07 000000486 INF: FPGA: 'ZDACW 36767' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:55:54.968 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:54.968 -07 000000415 INF: FPGA: Recv ZDACR 36767
17-03-17 18:55:54.978 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:54.978 -07 000000486 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:55:55.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:55:55.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:55:55.238 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:55.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:55:55.238 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:55:55.238 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:55.238 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:55.238 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:55.238 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 18:55:55.248 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:55:55.328 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:55:55.328 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 18:55:55.368 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:55.368 -07 000000541 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:55:55.378 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:55.378 -07 000000462 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:55.378 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:55:55.378 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.214 mm/sec
17-03-17 18:55:56.328 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:56.328 -07 000000431 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:55:56.338 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.338 -07 000000462 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:56.358 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:56.358 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:56.358 -07 000000462 INF: Y Motor: Moved to 71.5195 after 1418 ms (table move)
17-03-17 18:55:56.358 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168309 mm (DAC = 36767)
17-03-17 18:55:56.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.358 -07 000000438 INF: FPGA: Recv ZSGSRD 35488
17-03-17 18:55:56.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:56.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.368 -07 000000551 INF: FPGA: Recv ZSGSRD 35480
17-03-17 18:55:56.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.378 -07 000000433 INF: FPGA: Recv ZSGSRD 35488
17-03-17 18:55:56.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.388 -07 000000569 INF: FPGA: Recv ZSGSRD 35491
17-03-17 18:55:56.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.398 -07 000000462 INF: FPGA: Recv ZSGSRD 35495
17-03-17 18:55:56.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35491
17-03-17 18:55:56.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35502
17-03-17 18:55:56.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.428 -07 000000608 INF: FPGA: Recv ZSGSRD 35495
17-03-17 18:55:56.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.438 -07 000000512 INF: FPGA: Recv ZSGSRD 35487
17-03-17 18:55:56.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.448 -07 000000462 INF: FPGA: Recv ZSGSRD 35487
17-03-17 18:55:56.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:56.458 -07 000000623 INF: FPGA: Recv ZPIEZORD 31379
17-03-17 18:55:56.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.468 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.1 V.
17-03-17 18:55:56.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35490 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35490 (-167.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 35480 (-167.4 uncal um), Max = 35502 (-167.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:55:56.468 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35490, posNoise = 12, negNoise = 10
17-03-17 18:55:56.468 -07 000000610 INF: Z Motor: After move to -0.168309, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:56.468 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 107 ms (allowed 150 ms), total time = 1526 ms
17-03-17 18:55:56.468 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:56.518 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 18:55:56.518 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:56.518 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.168318640922231. ----------
17-03-17 18:55:56.518 -07 000000610 INF: Cycle	19	Tile	15	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:56.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36591, sync = True, waitForSettling = True)
17-03-17 18:55:56.518 -07 000000610 INF: Z Motor: Moving to -0.167503 mm, started at -0.168319 mm, distance = 0.82 um
17-03-17 18:55:56.518 -07 000000610 INF: FPGA: Xmit ZDACW 36591\n [Z Motor]
17-03-17 18:55:56.518 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:55:56.528 -07 000000610 INF: FPGA: 'ZDACW 36591' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:55:56.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:56.528 -07 000000541 INF: FPGA: Recv ZDACR 36591
17-03-17 18:55:56.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:56.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:55:56.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:55:56.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.688 -07 000000486 INF: FPGA: Recv ZSGSRD 35361
17-03-17 18:55:56.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:56.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.698 -07 000000476 INF: FPGA: Recv ZSGSRD 35371
17-03-17 18:55:56.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35364
17-03-17 18:55:56.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.718 -07 000000462 INF: FPGA: Recv ZSGSRD 35362
17-03-17 18:55:56.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35366
17-03-17 18:55:56.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.738 -07 000000551 INF: FPGA: Recv ZSGSRD 35365
17-03-17 18:55:56.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.748 -07 000000433 INF: FPGA: Recv ZSGSRD 35358
17-03-17 18:55:56.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.758 -07 000000486 INF: FPGA: Recv ZSGSRD 35358
17-03-17 18:55:56.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.768 -07 000000462 INF: FPGA: Recv ZSGSRD 35366
17-03-17 18:55:56.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:56.778 -07 000000623 INF: FPGA: Recv ZSGSRD 35369
17-03-17 18:55:56.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:56.788 -07 000000424 INF: FPGA: Recv ZPIEZORD 31181
17-03-17 18:55:56.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:56.798 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.2 V.
17-03-17 18:55:56.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35364 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35364 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35358 (-166.6 uncal um), Max = 35371 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:55:56.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35364, posNoise = 7, negNoise = 6
17-03-17 18:55:56.798 -07 000000610 INF: Z Motor: After move to -0.167503, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:56.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:55:56.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:55:56.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:55:56.798 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:55:56.798 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:55:56.798 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:55:56.798 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:55:56.798 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:55:56.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:55:56.798 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:55:56.798 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:55:56.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:55:56.798 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:55:56.808 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:55:56.808 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:55:56.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:55:56.808 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:55:56.808 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:55:56.808 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:55:56.818 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:55:56.818 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:55:56.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36767 150\n [Camera]
17-03-17 18:55:57.018 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:55:57.308 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.99219,
17-03-17 18:55:57.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:55:57.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:55:57.418 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:57.418 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:57.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) start.
17-03-17 18:55:57.418 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:55:57.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:55:57.418 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:57.418 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:57.418 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:55:57.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36767 781
17-03-17 18:55:57.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:55:57.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:55:57.798 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:55:57.798 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:57.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:55:57.798 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:55:57.798 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:57.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:57.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:55:57.798 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:57.808 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:55:57.948 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:55:57.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:55:57.948 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:55:57.948 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:55:57.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:55:57.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:55:57.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:55:57.948 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:55:57.948 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:55:57.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:55:58.138 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:55:58.138 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:55:58.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36767 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-17 18:55:58.138 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167402
17-03-17 18:55:58.138 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16740 mm
17-03-17 18:55:58.138 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:55:58.148 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:55:58.148 -07 000000433 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:55:58.148 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:58.148 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 36569, sync = True, waitForSettling = False)
17-03-17 18:55:58.148 -07 000000012 INF: Z Motor: Moving to -0.167402 mm, started at -0.167509 mm, distance = 0.11 um
17-03-17 18:55:58.148 -07 000000623 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:55:58.158 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:58.158 -07 000000012 INF: FPGA: Xmit ZDACW 36569\n [Z Motor]
17-03-17 18:55:58.158 -07 000000433 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:58.158 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:55:58.158 -07 000000433 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:55:58.158 -07 000000433 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:55:58.168 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:55:58.168 -07 000000012 INF: FPGA: 'ZDACW 36569' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:55:58.178 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:58.178 -07 000000486 INF: FPGA: Recv ZDACR 36569
17-03-17 18:55:58.188 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:55:58.188 -07 000000012 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:55:58.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:55:58.348 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:55:58.348 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:58.348 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:55:58.348 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:55:58.348 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:55:58.348 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:55:58.348 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:55:58.358 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:55:58.358 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:55:58.538 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:55:58.538 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:55:58.578 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:58.578 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:55:58.588 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:55:58.588 -07 000000433 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:58.588 -07 000000433 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:55:58.588 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.196 mm/sec
17-03-17 18:55:59.538 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:55:59.538 -07 000000569 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:55:59.548 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:59.548 -07 000000433 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:55:59.568 -07 000000433 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:55:59.568 -07 000000433 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:55:59.568 -07 000000433 INF: Y Motor: Moved to 72.3501 after 1420 ms (table move)
17-03-17 18:55:59.568 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167402 mm (DAC = 36569)
17-03-17 18:55:59.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.568 -07 000000462 INF: FPGA: Recv ZSGSRD 35343
17-03-17 18:55:59.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:59.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35352
17-03-17 18:55:59.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35345
17-03-17 18:55:59.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.598 -07 000000502 INF: FPGA: Recv ZSGSRD 35349
17-03-17 18:55:59.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.608 -07 000000433 INF: FPGA: Recv ZSGSRD 35348
17-03-17 18:55:59.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.618 -07 000000462 INF: FPGA: Recv ZSGSRD 35351
17-03-17 18:55:59.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.628 -07 000000476 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:55:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.638 -07 000000561 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:55:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.648 -07 000000012 INF: FPGA: Recv ZSGSRD 35352
17-03-17 18:55:59.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35343
17-03-17 18:55:59.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:59.668 -07 000000551 INF: FPGA: Recv ZPIEZORD 31150
17-03-17 18:55:59.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.678 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.3 V.
17-03-17 18:55:59.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35348 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35348 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35343 (-166.5 uncal um), Max = 35352 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:55:59.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35348, posNoise = 4, negNoise = 5
17-03-17 18:55:59.678 -07 000000610 INF: Z Motor: After move to -0.167402, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:55:59.678 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 106 ms (allowed 150 ms), total time = 1529 ms
17-03-17 18:55:59.678 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:55:59.728 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:55:59.728 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:55:59.728 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.167406402798101. ----------
17-03-17 18:55:59.728 -07 000000610 INF: Cycle	19	Tile	16	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:55:59.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36392, sync = True, waitForSettling = True)
17-03-17 18:55:59.728 -07 000000610 INF: Z Motor: Moving to -0.166592 mm, started at -0.167406 mm, distance = 0.81 um
17-03-17 18:55:59.728 -07 000000610 INF: FPGA: Xmit ZDACW 36392\n [Z Motor]
17-03-17 18:55:59.728 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:55:59.738 -07 000000610 INF: FPGA: 'ZDACW 36392' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:55:59.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:55:59.738 -07 000000502 INF: FPGA: Recv ZDACR 36392
17-03-17 18:55:59.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:55:59.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35223
17-03-17 18:55:59.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:55:59.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35226
17-03-17 18:55:59.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.918 -07 000000424 INF: FPGA: Recv ZSGSRD 35221
17-03-17 18:55:59.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.928 -07 000000623 INF: FPGA: Recv ZSGSRD 35228
17-03-17 18:55:59.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.938 -07 000000502 INF: FPGA: Recv ZSGSRD 35225
17-03-17 18:55:59.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.948 -07 000000462 INF: FPGA: Recv ZSGSRD 35225
17-03-17 18:55:59.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.958 -07 000000486 INF: FPGA: Recv ZSGSRD 35222
17-03-17 18:55:59.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.968 -07 000000512 INF: FPGA: Recv ZSGSRD 35220
17-03-17 18:55:59.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.978 -07 000000623 INF: FPGA: Recv ZSGSRD 35223
17-03-17 18:55:59.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:55:59.988 -07 000000012 INF: FPGA: Recv ZSGSRD 35219
17-03-17 18:55:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:55:59.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:55:59.998 -07 000000382 INF: FPGA: Recv ZPIEZORD 31008
17-03-17 18:56:00.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:00.008 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.3 V.
17-03-17 18:56:00.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35223 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35223 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35219 (-165.7 uncal um), Max = 35228 (-165.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:56:00.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35223, posNoise = 5, negNoise = 4
17-03-17 18:56:00.008 -07 000000610 INF: Z Motor: After move to -0.166592, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:00.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:56:00.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:00.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:00.008 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:00.008 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:00.008 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:00.008 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:00.008 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:00.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:00.008 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:00.008 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:00.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:00.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:00.018 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:00.018 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:00.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:56:00.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:00.028 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:56:00.028 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:56:00.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:56:00.028 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:56:00.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36569 150\n [Camera]
17-03-17 18:56:00.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:00.628 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:00.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:00.628 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:00.628 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:00.628 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:56:00.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:00.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:00.628 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:00.628 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:00.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:56:00.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36569 781
17-03-17 18:56:00.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:01.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:56:01.008 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:56:01.008 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:01.008 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:56:01.008 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:56:01.008 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:01.008 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:01.008 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:56:01.008 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:01.018 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:56:01.158 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:01.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:01.158 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:01.288 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:01.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:01.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:56:01.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:01.288 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:01.288 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:01.288 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) start.
17-03-17 18:56:01.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:56:01.348 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:01.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36569 150' command took 2 ms to send, 1309 ms to get response, and 1321 ms overall
17-03-17 18:56:01.358 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167160
17-03-17 18:56:01.358 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16716 mm
17-03-17 18:56:01.358 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:01.358 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:56:01.358 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:56:01.358 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:01.358 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36516, sync = True, waitForSettling = False)
17-03-17 18:56:01.358 -07 000000431 INF: Z Motor: Moving to -0.167160 mm, started at -0.166603 mm, distance = -0.56 um
17-03-17 18:56:01.358 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:56:01.368 -07 000000431 INF: FPGA: Xmit ZDACW 36516\n [Z Motor]
17-03-17 18:56:01.368 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:01.368 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:01.368 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:01.368 -07 000000502 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:56:01.368 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:56:01.378 -07 000000431 INF: FPGA: 'ZDACW 36516' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:56:01.378 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:01.378 -07 000000433 INF: FPGA: Recv ZDACR 36516
17-03-17 18:56:01.388 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:01.388 -07 000000431 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 18:56:01.388 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:01.638 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:01.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:01.668 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:56:01.668 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:56:01.668 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:01.668 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:56:01.668 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:56:01.668 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:01.678 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:01.678 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 18:56:01.678 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:01.688 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:56:01.758 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:56:01.758 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 18:56:01.798 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:01.798 -07 000000438 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:56:01.808 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:01.808 -07 000000502 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:01.808 -07 000000502 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:56:01.808 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 18:56:02.668 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.999021,
17-03-17 18:56:02.758 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:02.758 -07 000000512 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:56:02.768 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:02.768 -07 000000502 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:02.788 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:02.788 -07 000000502 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:02.788 -07 000000502 INF: Y Motor: Moved to 73.1768 after 1427 ms (table move)
17-03-17 18:56:02.788 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167160 mm (DAC = 36516)
17-03-17 18:56:02.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.788 -07 000000424 INF: FPGA: Recv ZSGSRD 35313
17-03-17 18:56:02.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:02.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.798 -07 000000382 INF: FPGA: Recv ZSGSRD 35307
17-03-17 18:56:02.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.808 -07 000000431 INF: FPGA: Recv ZSGSRD 35311
17-03-17 18:56:02.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.818 -07 000000438 INF: FPGA: Recv ZSGSRD 35314
17-03-17 18:56:02.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.828 -07 000000433 INF: FPGA: Recv ZSGSRD 35311
17-03-17 18:56:02.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.838 -07 000000424 INF: FPGA: Recv ZSGSRD 35314
17-03-17 18:56:02.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.848 -07 000000012 INF: FPGA: Recv ZSGSRD 35308
17-03-17 18:56:02.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.858 -07 000000431 INF: FPGA: Recv ZSGSRD 35308
17-03-17 18:56:02.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.868 -07 000000438 INF: FPGA: Recv ZSGSRD 35310
17-03-17 18:56:02.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:02.878 -07 000000486 INF: FPGA: Recv ZSGSRD 35309
17-03-17 18:56:02.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:02.888 -07 000000608 INF: FPGA: Recv ZPIEZORD 31142
17-03-17 18:56:02.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.898 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.2 V.
17-03-17 18:56:02.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35310 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35310 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35307 (-166.3 uncal um), Max = 35314 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:56:02.898 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35310, posNoise = 4, negNoise = 3
17-03-17 18:56:02.898 -07 000000610 INF: Z Motor: After move to -0.167160, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:02.898 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:56:02.898 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:02.948 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 18:56:02.948 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:02.948 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.167162282736714. ----------
17-03-17 18:56:02.948 -07 000000610 INF: Cycle	19	Tile	17	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:02.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36339, sync = True, waitForSettling = True)
17-03-17 18:56:02.948 -07 000000610 INF: Z Motor: Moving to -0.166349 mm, started at -0.167162 mm, distance = 0.81 um
17-03-17 18:56:02.948 -07 000000610 INF: FPGA: Xmit ZDACW 36339\n [Z Motor]
17-03-17 18:56:02.958 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:56:02.958 -07 000000610 INF: FPGA: 'ZDACW 36339' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:02.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:02.958 -07 000000382 INF: FPGA: Recv ZDACR 36339
17-03-17 18:56:02.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:02.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:03.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.118 -07 000000608 INF: FPGA: Recv ZSGSRD 35182
17-03-17 18:56:03.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.128 -07 000000433 INF: FPGA: Recv ZSGSRD 35192
17-03-17 18:56:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35184
17-03-17 18:56:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.148 -07 000000462 INF: FPGA: Recv ZSGSRD 35185
17-03-17 18:56:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:56:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.168 -07 000000551 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:56:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35184
17-03-17 18:56:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.188 -07 000000415 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:56:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.198 -07 000000462 INF: FPGA: Recv ZSGSRD 35186
17-03-17 18:56:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:03.208 -07 000000476 INF: FPGA: Recv ZSGSRD 35188
17-03-17 18:56:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:03.218 -07 000000502 INF: FPGA: Recv ZPIEZORD 30960
17-03-17 18:56:03.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:03.228 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.3 V.
17-03-17 18:56:03.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35185 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35184 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35181 (-165.5 uncal um), Max = 35192 (-165.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:56:03.228 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35185, posNoise = 7, negNoise = 4
17-03-17 18:56:03.228 -07 000000610 INF: Z Motor: After move to -0.166349, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:03.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:56:03.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:03.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:03.228 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:03.228 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:03.228 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:03.228 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:03.228 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:03.228 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:03.228 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:03.228 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:03.228 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:03.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:03.238 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:03.238 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:03.238 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:56:03.238 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:03.248 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:56:03.248 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:56:03.248 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:56:03.248 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:56:03.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36516 150\n [Camera]
17-03-17 18:56:03.458 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:56:03.848 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:03.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:03.848 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:03.848 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:03.848 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) start.
17-03-17 18:56:03.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:03.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:03.858 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:03.858 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:03.858 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:56:04.038 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36516 781
17-03-17 18:56:04.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:04.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:56:04.238 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:56:04.238 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:04.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:56:04.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:56:04.238 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:04.238 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:04.238 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:56:04.238 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:04.248 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:56:04.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:04.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:04.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:04.388 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:04.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:04.388 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:04.388 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:04.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:56:04.388 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:04.388 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:56:04.568 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:56:04.578 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:04.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36516 150' command took 2 ms to send, 1310 ms to get response, and 1321 ms overall
17-03-17 18:56:04.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:56:04.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.166359256218994. ------
17-03-17 18:56:04.578 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:04.578 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17283 mm
17-03-17 18:56:04.578 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:04.588 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:04.588 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:56:04.588 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:56:04.588 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 37755, sync = True, waitForSettling = False)
17-03-17 18:56:04.588 -07 000000486 INF: Z Motor: Moving to -0.172831 mm, started at -0.166359 mm, distance = -6.47 um
17-03-17 18:56:04.588 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:56:04.588 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:56:04.598 -07 000000486 INF: FPGA: Xmit ZDACW 37755\n [Z Motor]
17-03-17 18:56:04.598 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:56:04.608 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:04.608 -07 000000486 INF: FPGA: 'ZDACW 37755' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:56:04.608 -07 000000502 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:56:04.618 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:56:04.618 -07 000000382 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:04.618 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:04.618 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:04.618 -07 000000382 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:56:04.618 -07 000000438 INF: FPGA: Recv ZDACR 37755
17-03-17 18:56:04.628 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:04.628 -07 000000486 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:56:04.628 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:04.758 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:56:04.758 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:56:04.758 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:04.768 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:04.768 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:56:04.768 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:56:04.768 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:04.768 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:04.768 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:56:04.778 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:56:04.788 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:56:04.788 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:56:04.998 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:56:04.998 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 387 ms overall
17-03-17 18:56:05.028 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:05.028 -07 000000486 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:56:05.038 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:56:05.038 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:05.038 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:56:05.038 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.180 mm/sec
17-03-17 18:56:05.988 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:05.988 -07 000000415 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:56:05.998 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:05.998 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:06.008 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:06.008 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:06.008 -07 000000382 INF: Y Motor: Moved to 74.0088 after 1422 ms (table move)
17-03-17 18:56:06.008 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172831 mm (DAC = 37755)
17-03-17 18:56:06.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.018 -07 000000438 INF: FPGA: Recv ZSGSRD 36198
17-03-17 18:56:06.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:56:06.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.018 -07 000000415 INF: FPGA: Recv ZSGSRD 36198
17-03-17 18:56:06.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:56:06.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.028 -07 000000012 INF: FPGA: Recv ZSGSRD 36191
17-03-17 18:56:06.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.038 -07 000000433 INF: FPGA: Recv ZSGSRD 36192
17-03-17 18:56:06.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.048 -07 000000438 INF: FPGA: Recv ZSGSRD 36191
17-03-17 18:56:06.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36195
17-03-17 18:56:06.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.068 -07 000000476 INF: FPGA: Recv ZSGSRD 36196
17-03-17 18:56:06.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36199
17-03-17 18:56:06.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.088 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.088 -07 000000415 INF: FPGA: Recv ZSGSRD 36188
17-03-17 18:56:06.098 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.098 -07 000000382 INF: FPGA: Recv ZSGSRD 36189
17-03-17 18:56:06.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.108 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:06.108 -07 000000433 INF: FPGA: Recv ZPIEZORD 32325
17-03-17 18:56:06.118 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.118 -07 000000569 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.6 V.
17-03-17 18:56:06.118 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36194 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36194 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36188 (-171.9 uncal um), Max = 36199 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:56:06.118 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36194, posNoise = 5, negNoise = 6
17-03-17 18:56:06.118 -07 000000569 INF: Z Motor: After move to -0.172831, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:06.118 -07 000000569 INF: Z Motor: Settle wait time = 1425 ms, measure time = 103 ms (allowed 150 ms), total time = 1528 ms
17-03-17 18:56:06.118 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:06.168 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 18:56:06.168 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:06.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:06.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:06.168 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:06.168 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:06.168 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:56:06.168 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:06.168 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:06.168 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:56:06.178 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:06.178 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:56:06.188 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:56:06.188 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:56:06.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:56:06.238 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:56:06.438 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:56:06.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:56:06.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:56:06.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:56:06.478 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:56:06.478 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:56:06.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 286 ms overall
17-03-17 18:56:06.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:56:06.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:06.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:56:06.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:56:06.578 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:06.578 -07 000000502 INF: Autofocus start
17-03-17 18:56:06.578 -07 000000502 INF: MeasureProfile start
17-03-17 18:56:06.578 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:06.588 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:06.588 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:56:06.588 -07 000000502 INF: MeasureProfile done
17-03-17 18:56:06.588 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:56:06.588 -07 000000502 INF: Autofocus finished
17-03-17 18:56:06.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:06.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:06.788 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:56:06.788 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:56:06.788 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172841286270031. ----------
17-03-17 18:56:06.788 -07 000000610 INF: Cycle	19	Tile	18	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:06.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36270, sync = True, waitForSettling = True)
17-03-17 18:56:06.798 -07 000000610 INF: Z Motor: Moving to -0.166033 mm, started at -0.172841 mm, distance = 6.81 um
17-03-17 18:56:06.798 -07 000000610 INF: FPGA: Xmit ZDACW 36270\n [Z Motor]
17-03-17 18:56:06.798 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:56:06.808 -07 000000610 INF: FPGA: 'ZDACW 36270' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:06.808 -07 000000512 INF: FPGA: Recv ZDACR 36270
17-03-17 18:56:06.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:06.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.968 -07 000000608 INF: FPGA: Recv ZSGSRD 35134
17-03-17 18:56:06.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:06.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35136
17-03-17 18:56:06.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.988 -07 000000012 INF: FPGA: Recv ZSGSRD 35135
17-03-17 18:56:06.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:06.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:06.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35136
17-03-17 18:56:07.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:07.008 -07 000000382 INF: FPGA: Recv ZSGSRD 35134
17-03-17 18:56:07.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:07.018 -07 000000462 INF: FPGA: Recv ZSGSRD 35136
17-03-17 18:56:07.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:07.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35138
17-03-17 18:56:07.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:07.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35139
17-03-17 18:56:07.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:07.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35137
17-03-17 18:56:07.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:07.058 -07 000000502 INF: FPGA: Recv ZSGSRD 35136
17-03-17 18:56:07.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:07.068 -07 000000486 INF: FPGA: Recv ZPIEZORD 30884
17-03-17 18:56:07.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:07.078 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -9.4 V.
17-03-17 18:56:07.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35136 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35136 (-165.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35134 (-165.2 uncal um), Max = 35139 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:56:07.078 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35136, posNoise = 3, negNoise = 2
17-03-17 18:56:07.078 -07 000000610 INF: Z Motor: After move to -0.166033, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:07.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:56:07.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:07.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:07.078 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:07.078 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:07.078 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:07.078 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:07.078 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:07.078 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:07.078 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:07.078 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:07.078 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:07.078 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:07.078 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:07.078 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:07.078 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:56:07.078 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:07.098 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:56:07.098 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:56:07.098 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:56:07.098 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:56:07.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36446 150\n [Camera]
17-03-17 18:56:07.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:07.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:56:07.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:56:07.698 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:07.698 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:07.698 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:56:07.698 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:56:07.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:56:07.698 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:07.698 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:07.698 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:56:07.888 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36446 781
17-03-17 18:56:08.028 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.018051,
17-03-17 18:56:08.038 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:08.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:56:08.078 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:56:08.078 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:08.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:56:08.078 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:56:08.078 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:08.078 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:08.078 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:08.078 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:56:08.088 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:56:08.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:08.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:08.228 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:08.238 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:08.238 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:56:08.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:08.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:08.238 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:08.238 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:08.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:56:08.418 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:56:08.418 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:08.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36446 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-17 18:56:08.428 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166436
17-03-17 18:56:08.428 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16644 mm
17-03-17 18:56:08.428 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:08.428 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:56:08.428 -07 000000512 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:56:08.428 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:08.428 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36358, sync = True, waitForSettling = False)
17-03-17 18:56:08.428 -07 000000569 INF: Z Motor: Moving to -0.166436 mm, started at -0.166044 mm, distance = -0.39 um
17-03-17 18:56:08.428 -07 000000551 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:56:08.438 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:56:08.438 -07 000000512 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:08.438 -07 000000512 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:08.438 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:56:08.438 -07 000000569 INF: FPGA: Xmit ZDACW 36358\n [Z Motor]
17-03-17 18:56:08.438 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:56:08.448 -07 000000569 INF: FPGA: 'ZDACW 36358' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:56:08.448 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:08.448 -07 000000623 INF: FPGA: Recv ZDACR 36358
17-03-17 18:56:08.458 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:08.458 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:08.458 -07 000000569 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 18:56:08.618 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:56:08.618 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:56:08.618 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:08.618 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:56:08.618 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:56:08.618 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:08.628 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:08.628 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:08.628 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:56:08.628 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:56:08.828 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:56:08.828 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:56:08.858 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:08.858 -07 000000462 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:56:08.868 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:08.868 -07 000000512 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:08.868 -07 000000512 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:56:08.868 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:56:09.818 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:09.818 -07 000000431 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:56:09.828 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.828 -07 000000512 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:09.838 -07 000000512 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:09.838 -07 000000512 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:56:09.838 -07 000000512 INF: Y Motor: Moved to 74.8330 after 1408 ms (table move)
17-03-17 18:56:09.838 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166436 mm (DAC = 36358)
17-03-17 18:56:09.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35199
17-03-17 18:56:09.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:56:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.848 -07 000000486 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:56:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.858 -07 000000476 INF: FPGA: Recv ZSGSRD 35190
17-03-17 18:56:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.868 -07 000000012 INF: FPGA: Recv ZSGSRD 35195
17-03-17 18:56:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.878 -07 000000512 INF: FPGA: Recv ZSGSRD 35198
17-03-17 18:56:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.888 -07 000000431 INF: FPGA: Recv ZSGSRD 35196
17-03-17 18:56:09.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.898 -07 000000424 INF: FPGA: Recv ZSGSRD 35201
17-03-17 18:56:09.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.908 -07 000000476 INF: FPGA: Recv ZSGSRD 35205
17-03-17 18:56:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.918 -07 000000012 INF: FPGA: Recv ZSGSRD 35208
17-03-17 18:56:09.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:09.928 -07 000000623 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:56:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:56:09.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:09.938 -07 000000486 INF: FPGA: Recv ZPIEZORD 31027
17-03-17 18:56:09.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:09.948 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.2 V.
17-03-17 18:56:09.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35200 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35200 (-165.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35190 (-165.5 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:56:09.948 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35200, posNoise = 8, negNoise = 10
17-03-17 18:56:09.948 -07 000000610 INF: Z Motor: After move to -0.166436, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:09.948 -07 000000610 INF: Z Motor: Settle wait time = 1410 ms, measure time = 104 ms (allowed 150 ms), total time = 1514 ms
17-03-17 18:56:09.948 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:09.998 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1566 ms
17-03-17 18:56:09.998 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:09.998 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.166455619401121. ----------
17-03-17 18:56:09.998 -07 000000610 INF: Cycle	19	Tile	19	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:09.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36181, sync = True, waitForSettling = True)
17-03-17 18:56:09.998 -07 000000610 INF: Z Motor: Moving to -0.165626 mm, started at -0.166456 mm, distance = 0.83 um
17-03-17 18:56:09.998 -07 000000610 INF: FPGA: Xmit ZDACW 36181\n [Z Motor]
17-03-17 18:56:09.998 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:56:10.008 -07 000000610 INF: FPGA: 'ZDACW 36181' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:10.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:10.008 -07 000000486 INF: FPGA: Recv ZDACR 36181
17-03-17 18:56:10.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:10.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.168 -07 000000382 INF: FPGA: Recv ZSGSRD 35075
17-03-17 18:56:10.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:10.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.178 -07 000000462 INF: FPGA: Recv ZSGSRD 35067
17-03-17 18:56:10.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.188 -07 000000541 INF: FPGA: Recv ZSGSRD 35074
17-03-17 18:56:10.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.198 -07 000000438 INF: FPGA: Recv ZSGSRD 35068
17-03-17 18:56:10.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35073
17-03-17 18:56:10.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.218 -07 000000382 INF: FPGA: Recv ZSGSRD 35083
17-03-17 18:56:10.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.228 -07 000000415 INF: FPGA: Recv ZSGSRD 35068
17-03-17 18:56:10.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35073
17-03-17 18:56:10.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.248 -07 000000438 INF: FPGA: Recv ZSGSRD 35076
17-03-17 18:56:10.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:10.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35066
17-03-17 18:56:10.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:10.268 -07 000000382 INF: FPGA: Recv ZPIEZORD 30851
17-03-17 18:56:10.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:10.278 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.521 V. Piezo Error = -9.3 V.
17-03-17 18:56:10.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35072 (-164.8 uncal um), Error = 0.9 uncal um, Median = 35073 (-164.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35066 (-164.7 uncal um), Max = 35083 (-164.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:56:10.278 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35072, posNoise = 11, negNoise = 6
17-03-17 18:56:10.278 -07 000000610 INF: Z Motor: After move to -0.165626, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:10.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:56:10.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:10.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:10.278 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:10.278 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:10.278 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:10.278 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:10.278 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:10.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:10.278 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:56:10.278 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:10.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:10.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:10.288 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:10.288 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:10.288 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:56:10.288 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:10.298 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:56:10.298 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:56:10.298 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:56:10.298 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:56:10.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36358 150\n [Camera]
17-03-17 18:56:10.498 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:56:10.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:10.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:10.898 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:10.898 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:10.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:56:10.898 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:10.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:10.898 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:10.898 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:10.898 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:56:11.088 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36358 781
17-03-17 18:56:11.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:11.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:56:11.278 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:56:11.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:11.288 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:11.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:56:11.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:56:11.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:11.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:56:11.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:56:11.298 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:56:11.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:11.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:11.428 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:11.428 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:11.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:56:11.428 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:11.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:11.428 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:11.428 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:11.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:56:11.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:11.618 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:11.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36358 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:56:11.638 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:11.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:11.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:56:11.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:56:11.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:11.808 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:56:11.808 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:56:11.808 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:11.818 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:11.818 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:56:11.818 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:56:11.818 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:11.828 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:56:11.858 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:56:11.858 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:56:11.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:56:11.898 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:56:11.908 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:56:11.908 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 18:56:11.918 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:11.918 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:56:12.418 -07 000000012 INF: FPGA: Recv EMIN
17-03-17 18:56:12.418 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:56:12.418 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:56:12.418 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 18:56:12.428 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:12.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:56:12.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8330078125, Z-Position -0.165633320246975. ------
17-03-17 18:56:12.428 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:12.428 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14019 mm
17-03-17 18:56:12.428 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:12.438 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:12.438 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:12.438 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30625, sync = True, waitForSettling = False)
17-03-17 18:56:12.438 -07 000000608 INF: Z Motor: Moving to -0.140192 mm, started at -0.165633 mm, distance = 25.44 um
17-03-17 18:56:12.438 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:56:12.438 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:56:12.438 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 74.8330 mm, delta = -14.9204 mm
17-03-17 18:56:12.448 -07 000000608 INF: FPGA: Xmit ZDACW 30625\n [Z Motor]
17-03-17 18:56:12.448 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:56:12.458 -07 000000608 INF: FPGA: 'ZDACW 30625' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:56:12.458 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:12.458 -07 000000541 INF: FPGA: Recv YRDPOS 153259
17-03-17 18:56:12.468 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:56:12.468 -07 000000462 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:12.468 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:12.468 -07 000000462 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:56:12.468 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:56:12.468 -07 000000012 INF: FPGA: Recv ZDACR 30625
17-03-17 18:56:12.478 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:12.478 -07 000000608 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:56:12.478 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:56:12.638 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:56:12.638 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 18:56:13.388 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.014009,
17-03-17 18:56:14.098 -07 000000476 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 18:56:14.098 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1636 ms overall
17-03-17 18:56:14.098 -07 000000462 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:56:14.098 -07 000000462 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:56:14.098 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1637 ms, distance = 14.920 mm, average velocity = 9.114 mm/sec
17-03-17 18:56:16.638 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:16.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:16.948 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:16.948 -07 000000623 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:56:16.958 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:16.958 -07 000000462 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:16.978 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:16.978 -07 000000462 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:56:16.978 -07 000000462 INF: Y Motor: Moved to 59.9116 after 4545 ms
17-03-17 18:56:16.988 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140192 mm (DAC = 30625)
17-03-17 18:56:16.988 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:16.988 -07 000000541 INF: FPGA: Recv ZSGSRD 31116
17-03-17 18:56:16.998 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:56:16.998 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:16.998 -07 000000623 INF: FPGA: Recv ZSGSRD 31109
17-03-17 18:56:17.008 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.008 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.008 -07 000000433 INF: FPGA: Recv ZSGSRD 31113
17-03-17 18:56:17.018 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.018 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.018 -07 000000561 INF: FPGA: Recv ZSGSRD 31111
17-03-17 18:56:17.028 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.028 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.028 -07 000000382 INF: FPGA: Recv ZSGSRD 31118
17-03-17 18:56:17.038 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.038 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.038 -07 000000486 INF: FPGA: Recv ZSGSRD 31111
17-03-17 18:56:17.048 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.048 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.048 -07 000000502 INF: FPGA: Recv ZSGSRD 31109
17-03-17 18:56:17.058 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.058 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.058 -07 000000561 INF: FPGA: Recv ZSGSRD 31117
17-03-17 18:56:17.068 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.068 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.068 -07 000000623 INF: FPGA: Recv ZSGSRD 31112
17-03-17 18:56:17.078 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.078 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.078 -07 000000486 INF: FPGA: Recv ZSGSRD 31117
17-03-17 18:56:17.088 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.088 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:17.088 -07 000000438 INF: FPGA: Recv ZPIEZORD 26696
17-03-17 18:56:17.098 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.098 -07 000000551 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.673 V. Piezo Error = -9.7 V.
17-03-17 18:56:17.098 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31113 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31112 (-139.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31109 (-139.4 uncal um), Max = 31118 (-139.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:56:17.098 -07 000000551 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31113, posNoise = 5, negNoise = 4
17-03-17 18:56:17.098 -07 000000551 INF: Z Motor: After move to -0.140192, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:17.098 -07 000000551 INF: Z Motor: Settle wait time = 4549 ms, measure time = 110 ms (allowed 150 ms), total time = 4659 ms
17-03-17 18:56:17.098 -07 000000551 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:17.138 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 18:56:17.138 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:17.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:17.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:17.138 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:17.138 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:17.148 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:56:17.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:17.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:56:17.148 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:56:17.168 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 18:56:17.168 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:56:17.168 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:17.168 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:56:17.178 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:56:17.178 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 18:56:17.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:56:17.228 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:56:17.418 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:56:17.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:56:17.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:56:17.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:56:17.458 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:56:17.468 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:56:17.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:56:17.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:56:17.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:17.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:56:17.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:56:17.568 -07 000000431 INF: Image SNR check: start
17-03-17 18:56:17.568 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:17.568 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:17.578 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:17.578 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:56:17.588 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=69.92]
17-03-17 18:56:17.588 -07 000000431 INF: Autofocus start
17-03-17 18:56:17.588 -07 000000431 INF: MeasureProfile start
17-03-17 18:56:17.598 -07 000000431 INF: MeasureProfile done
17-03-17 18:56:17.598 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:56:17.598 -07 000000431 INF: Autofocus finished
17-03-17 18:56:17.778 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:56:17.778 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:56:17.778 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140199864377744. ----------
17-03-17 18:56:17.788 -07 000000610 INF: Cycle	19	Tile	1	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:17.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29149, sync = True, waitForSettling = True)
17-03-17 18:56:17.788 -07 000000610 INF: Z Motor: Moving to -0.133436 mm, started at -0.140200 mm, distance = 6.76 um
17-03-17 18:56:17.788 -07 000000610 INF: FPGA: Xmit ZDACW 29149\n [Z Motor]
17-03-17 18:56:17.788 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:56:17.798 -07 000000610 INF: FPGA: 'ZDACW 29149' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:17.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:17.798 -07 000000608 INF: FPGA: Recv ZDACR 29149
17-03-17 18:56:17.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:17.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.958 -07 000000551 INF: FPGA: Recv ZSGSRD 30065
17-03-17 18:56:17.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:17.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.968 -07 000000541 INF: FPGA: Recv ZSGSRD 30058
17-03-17 18:56:17.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30062
17-03-17 18:56:17.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30057
17-03-17 18:56:17.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:17.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:17.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30063
17-03-17 18:56:18.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:18.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:18.008 -07 000000462 INF: FPGA: Recv ZSGSRD 30070
17-03-17 18:56:18.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:18.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:18.018 -07 000000502 INF: FPGA: Recv ZSGSRD 30055
17-03-17 18:56:18.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:18.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:18.028 -07 000000486 INF: FPGA: Recv ZSGSRD 30057
17-03-17 18:56:18.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:18.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:18.038 -07 000000512 INF: FPGA: Recv ZSGSRD 30062
17-03-17 18:56:18.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:18.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:18.048 -07 000000431 INF: FPGA: Recv ZSGSRD 30065
17-03-17 18:56:18.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:18.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:18.058 -07 000000438 INF: FPGA: Recv ZPIEZORD 25572
17-03-17 18:56:18.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:18.068 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.9 V.
17-03-17 18:56:18.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30061 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30062 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30055 (-132.6 uncal um), Max = 30070 (-132.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:56:18.068 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30061, posNoise = 9, negNoise = 6
17-03-17 18:56:18.068 -07 000000610 INF: Z Motor: After move to -0.133436, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:18.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:56:18.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:18.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:18.068 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:18.068 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:18.068 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:18.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:18.068 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:18.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:18.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:18.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:18.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:18.068 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:56:18.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:18.068 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:18.088 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:56:18.088 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:56:18.088 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 18:56:18.088 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:18.098 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:56:18.098 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:18.098 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:56:18.098 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 18:56:18.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29326 150\n [Camera]
17-03-17 18:56:18.308 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:18.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:56:18.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:56:18.698 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:18.698 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:18.698 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:56:18.708 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:56:18.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:56:18.708 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:18.708 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:18.708 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:56:18.748 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.007176,
17-03-17 18:56:18.888 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29326 781
17-03-17 18:56:19.038 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:19.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:56:19.098 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:56:19.098 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:19.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:56:19.098 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:56:19.098 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:19.108 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:19.108 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:56:19.108 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:19.108 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:56:19.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:19.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:19.238 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:19.238 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:19.238 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:19.238 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:56:19.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:19.238 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:19.238 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:19.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:56:19.428 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:19.428 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:19.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29326 150' command took 2 ms to send, 1311 ms to get response, and 1320 ms overall
17-03-17 18:56:19.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:56:19.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133441593204611. ------
17-03-17 18:56:19.428 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:19.428 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13989 mm
17-03-17 18:56:19.428 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:19.428 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30560, sync = True, waitForSettling = False)
17-03-17 18:56:19.428 -07 000000415 INF: Z Motor: Moving to -0.139895 mm, started at -0.133442 mm, distance = -6.45 um
17-03-17 18:56:19.428 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:56:19.428 -07 000000569 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:56:19.438 -07 000000415 INF: FPGA: Xmit ZDACW 30560\n [Z Motor]
17-03-17 18:56:19.438 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:19.438 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 18:56:19.438 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:56:19.448 -07 000000415 INF: FPGA: 'ZDACW 30560' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:19.448 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:56:19.458 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:19.458 -07 000000561 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:56:19.468 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:56:19.468 -07 000000569 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:19.468 -07 000000569 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:19.468 -07 000000569 INF: Y Motor: Moving 1330 steps1
17-03-17 18:56:19.468 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:19.468 -07 000000424 INF: FPGA: Recv ZDACR 30560
17-03-17 18:56:19.478 -07 000000415 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:56:19.478 -07 000000415 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:56:19.478 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:19.638 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:56:19.638 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:56:19.638 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:19.638 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:56:19.638 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:56:19.638 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:19.648 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:19.648 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:56:19.648 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 18:56:19.648 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:56:19.648 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:56:19.648 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:56:19.848 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:56:19.848 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:56:19.878 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:19.878 -07 000000382 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:56:19.888 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:19.888 -07 000000569 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:19.888 -07 000000569 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:56:19.888 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.831 mm, average velocity = 2.147 mm/sec
17-03-17 18:56:20.838 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:20.838 -07 000000382 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:56:20.848 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:20.848 -07 000000569 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:20.868 -07 000000569 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:20.868 -07 000000569 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:20.868 -07 000000569 INF: Y Motor: Moved to 60.7334 after 1431 ms (table move)
17-03-17 18:56:20.868 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139895 mm (DAC = 30560)
17-03-17 18:56:20.868 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.868 -07 000000608 INF: FPGA: Recv ZSGSRD 31069
17-03-17 18:56:20.878 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:20.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.878 -07 000000382 INF: FPGA: Recv ZSGSRD 31060
17-03-17 18:56:20.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.888 -07 000000476 INF: FPGA: Recv ZSGSRD 31067
17-03-17 18:56:20.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.898 -07 000000431 INF: FPGA: Recv ZSGSRD 31067
17-03-17 18:56:20.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.908 -07 000000608 INF: FPGA: Recv ZSGSRD 31072
17-03-17 18:56:20.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.918 -07 000000462 INF: FPGA: Recv ZSGSRD 31075
17-03-17 18:56:20.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.928 -07 000000012 INF: FPGA: Recv ZSGSRD 31066
17-03-17 18:56:20.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.938 -07 000000431 INF: FPGA: Recv ZSGSRD 31064
17-03-17 18:56:20.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.948 -07 000000608 INF: FPGA: Recv ZSGSRD 31062
17-03-17 18:56:20.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:20.958 -07 000000623 INF: FPGA: Recv ZSGSRD 31060
17-03-17 18:56:20.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.968 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:20.968 -07 000000512 INF: FPGA: Recv ZPIEZORD 26909
17-03-17 18:56:20.978 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:20.978 -07 000000551 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.663 V. Piezo Error = -9.1 V.
17-03-17 18:56:20.978 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31066 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31066 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31060 (-139.1 uncal um), Max = 31075 (-139.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:56:20.978 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31066, posNoise = 9, negNoise = 6
17-03-17 18:56:20.978 -07 000000551 INF: Z Motor: After move to -0.139895, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:20.978 -07 000000551 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:56:20.978 -07 000000551 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:21.028 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:56:21.028 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:21.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:21.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:21.028 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:21.028 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:21.028 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:56:21.028 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:21.028 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:56:21.028 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:56:21.028 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:21.028 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:56:21.048 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:56:21.048 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:56:21.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:56:21.098 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:56:21.298 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:56:21.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:56:21.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:56:21.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 18:56:21.328 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:56:21.338 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:56:21.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:56:21.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:56:21.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:21.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:56:21.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:56:21.438 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:21.438 -07 000000561 INF: Autofocus start
17-03-17 18:56:21.438 -07 000000561 INF: MeasureProfile start
17-03-17 18:56:21.438 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:21.448 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:21.448 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:56:21.448 -07 000000561 INF: MeasureProfile done
17-03-17 18:56:21.448 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:56:21.448 -07 000000561 INF: Autofocus finished
17-03-17 18:56:21.638 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:21.648 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:56:21.648 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:56:21.648 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139897926407081. ----------
17-03-17 18:56:21.648 -07 000000610 INF: Cycle	19	Tile	2	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:21.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29084, sync = True, waitForSettling = True)
17-03-17 18:56:21.658 -07 000000610 INF: Z Motor: Moving to -0.133138 mm, started at -0.139898 mm, distance = 6.76 um
17-03-17 18:56:21.658 -07 000000610 INF: FPGA: Xmit ZDACW 29084\n [Z Motor]
17-03-17 18:56:21.658 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:56:21.668 -07 000000610 INF: FPGA: 'ZDACW 29084' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:21.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:21.668 -07 000000476 INF: FPGA: Recv ZDACR 29084
17-03-17 18:56:21.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:21.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.828 -07 000000561 INF: FPGA: Recv ZSGSRD 30016
17-03-17 18:56:21.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.838 -07 000000415 INF: FPGA: Recv ZSGSRD 30022
17-03-17 18:56:21.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.848 -07 000000382 INF: FPGA: Recv ZSGSRD 30012
17-03-17 18:56:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.858 -07 000000486 INF: FPGA: Recv ZSGSRD 30015
17-03-17 18:56:21.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.868 -07 000000431 INF: FPGA: Recv ZSGSRD 30009
17-03-17 18:56:21.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.878 -07 000000424 INF: FPGA: Recv ZSGSRD 30017
17-03-17 18:56:21.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.888 -07 000000462 INF: FPGA: Recv ZSGSRD 30021
17-03-17 18:56:21.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.898 -07 000000476 INF: FPGA: Recv ZSGSRD 30013
17-03-17 18:56:21.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.908 -07 000000541 INF: FPGA: Recv ZSGSRD 30018
17-03-17 18:56:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:21.918 -07 000000012 INF: FPGA: Recv ZSGSRD 30018
17-03-17 18:56:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:21.928 -07 000000415 INF: FPGA: Recv ZPIEZORD 25568
17-03-17 18:56:21.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:21.938 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.8 V.
17-03-17 18:56:21.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30016 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30016 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30009 (-132.3 uncal um), Max = 30022 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:21.938 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30016, posNoise = 6, negNoise = 7
17-03-17 18:56:21.938 -07 000000610 INF: Z Motor: After move to -0.133138, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:21.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:56:21.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:21.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:21.938 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:21.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:21.938 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:21.938 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:21.938 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:21.938 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:21.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:21.938 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:21.938 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:56:21.938 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:21.938 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:56:21.948 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:21.948 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:56:21.948 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:21.958 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:56:21.958 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:56:21.958 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:56:21.958 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:56:21.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29261 150\n [Camera]
17-03-17 18:56:22.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:56:22.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:22.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:22.558 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:22.558 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:22.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:56:22.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:22.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:22.558 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:22.558 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:22.558 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:56:22.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29261 781
17-03-17 18:56:22.898 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:22.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:56:22.958 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:56:22.958 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:22.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:56:22.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:56:22.958 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:22.958 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:22.958 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:56:22.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:22.968 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:56:23.088 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:23.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:23.088 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:23.088 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:23.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:56:23.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:23.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:23.088 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:23.088 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:23.088 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 18:56:23.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:23.278 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:23.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29261 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-17 18:56:23.278 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133848
17-03-17 18:56:23.278 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13385 mm
17-03-17 18:56:23.278 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:23.288 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29239, sync = True, waitForSettling = False)
17-03-17 18:56:23.288 -07 000000438 INF: Z Motor: Moving to -0.133848 mm, started at -0.133153 mm, distance = -0.70 um
17-03-17 18:56:23.288 -07 000000438 INF: FPGA: Xmit ZDACW 29239\n [Z Motor]
17-03-17 18:56:23.288 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:56:23.288 -07 000000569 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:56:23.288 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:56:23.298 -07 000000438 INF: FPGA: 'ZDACW 29239' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:23.298 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:23.298 -07 000000486 INF: FPGA: Recv ZDACR 29239
17-03-17 18:56:23.308 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:23.308 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:23.308 -07 000000438 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 18:56:23.308 -07 000000012 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:56:23.318 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:56:23.318 -07 000000569 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:23.318 -07 000000569 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:23.318 -07 000000569 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:56:23.318 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:23.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:56:23.498 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:56:23.498 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:23.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 18:56:23.498 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:56:23.498 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:23.498 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:23.498 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:56:23.498 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:56:23.508 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:56:23.698 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:56:23.698 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 18:56:23.728 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:23.728 -07 000000512 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:56:23.738 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:23.738 -07 000000569 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:23.738 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:56:23.738 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-17 18:56:24.108 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.989471,
17-03-17 18:56:24.688 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:24.688 -07 000000382 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:56:24.698 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:24.698 -07 000000569 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:24.718 -07 000000569 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:24.718 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:24.718 -07 000000569 INF: Y Motor: Moved to 61.5645 after 1428 ms (table move)
17-03-17 18:56:24.718 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133848 mm (DAC = 29239)
17-03-17 18:56:24.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.718 -07 000000486 INF: FPGA: Recv ZSGSRD 30119
17-03-17 18:56:24.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:24.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.728 -07 000000382 INF: FPGA: Recv ZSGSRD 30130
17-03-17 18:56:24.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.738 -07 000000424 INF: FPGA: Recv ZSGSRD 30118
17-03-17 18:56:24.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.748 -07 000000476 INF: FPGA: Recv ZSGSRD 30123
17-03-17 18:56:24.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.758 -07 000000512 INF: FPGA: Recv ZSGSRD 30128
17-03-17 18:56:24.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.768 -07 000000433 INF: FPGA: Recv ZSGSRD 30125
17-03-17 18:56:24.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.778 -07 000000462 INF: FPGA: Recv ZSGSRD 30129
17-03-17 18:56:24.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.788 -07 000000415 INF: FPGA: Recv ZSGSRD 30129
17-03-17 18:56:24.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30133
17-03-17 18:56:24.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:24.808 -07 000000561 INF: FPGA: Recv ZSGSRD 30121
17-03-17 18:56:24.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:24.818 -07 000000433 INF: FPGA: Recv ZPIEZORD 25760
17-03-17 18:56:24.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.828 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.462 V. Piezo Error = -9.6 V.
17-03-17 18:56:24.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30126 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30126 (-133.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30118 (-133.0 uncal um), Max = 30133 (-133.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:56:24.828 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30126, posNoise = 7, negNoise = 8
17-03-17 18:56:24.828 -07 000000610 INF: Z Motor: After move to -0.133848, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:24.828 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 107 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:56:24.828 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:24.878 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:56:24.878 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:24.878 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.133859166993826. ----------
17-03-17 18:56:24.878 -07 000000610 INF: Cycle	19	Tile	3	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:24.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29062, sync = True, waitForSettling = True)
17-03-17 18:56:24.878 -07 000000610 INF: Z Motor: Moving to -0.133037 mm, started at -0.133859 mm, distance = 0.82 um
17-03-17 18:56:24.878 -07 000000610 INF: FPGA: Xmit ZDACW 29062\n [Z Motor]
17-03-17 18:56:24.878 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:56:24.888 -07 000000610 INF: FPGA: 'ZDACW 29062' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:56:24.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:24.888 -07 000000541 INF: FPGA: Recv ZDACR 29062
17-03-17 18:56:24.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:24.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.048 -07 000000433 INF: FPGA: Recv ZSGSRD 29999
17-03-17 18:56:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30004
17-03-17 18:56:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.068 -07 000000561 INF: FPGA: Recv ZSGSRD 30002
17-03-17 18:56:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.078 -07 000000424 INF: FPGA: Recv ZSGSRD 30000
17-03-17 18:56:25.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.088 -07 000000569 INF: FPGA: Recv ZSGSRD 29995
17-03-17 18:56:25.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.098 -07 000000433 INF: FPGA: Recv ZSGSRD 30000
17-03-17 18:56:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.108 -07 000000382 INF: FPGA: Recv ZSGSRD 30006
17-03-17 18:56:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29997
17-03-17 18:56:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.128 -07 000000424 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:56:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:25.138 -07 000000569 INF: FPGA: Recv ZSGSRD 30000
17-03-17 18:56:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:25.148 -07 000000433 INF: FPGA: Recv ZPIEZORD 25604
17-03-17 18:56:25.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:25.158 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.435 V. Piezo Error = -9.6 V.
17-03-17 18:56:25.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 30000 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30000 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29993 (-132.2 uncal um), Max = 30006 (-132.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:25.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30000, posNoise = 6, negNoise = 7
17-03-17 18:56:25.158 -07 000000610 INF: Z Motor: After move to -0.133037, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:25.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:56:25.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:25.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:25.158 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:25.158 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:25.158 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:25.158 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:25.158 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:25.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:25.158 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:56:25.158 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:25.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 18:56:25.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:25.168 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:56:25.168 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:25.168 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:25.168 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:25.178 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:56:25.178 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:56:25.178 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:56:25.178 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:56:25.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29239 150\n [Camera]
17-03-17 18:56:25.378 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:25.768 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:25.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:25.778 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:25.778 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:25.778 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 18:56:25.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:25.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:25.778 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:25.778 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:25.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 18:56:25.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29239 781
17-03-17 18:56:26.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:26.148 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:56:26.148 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:56:26.148 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:26.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:56:26.148 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:56:26.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:26.158 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:26.158 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:26.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:56:26.158 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:56:26.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:26.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:26.308 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:26.308 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:26.308 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 18:56:26.308 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:26.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:26.308 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:26.308 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:26.308 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 18:56:26.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:26.498 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:26.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29239 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:56:26.498 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133429
17-03-17 18:56:26.498 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13343 mm
17-03-17 18:56:26.498 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:26.498 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:56:26.498 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:56:26.498 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29148, sync = True, waitForSettling = False)
17-03-17 18:56:26.498 -07 000000541 INF: Z Motor: Moving to -0.133431 mm, started at -0.133050 mm, distance = -0.38 um
17-03-17 18:56:26.498 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:26.508 -07 000000541 INF: FPGA: Xmit ZDACW 29148\n [Z Motor]
17-03-17 18:56:26.508 -07 000000431 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:56:26.508 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:56:26.508 -07 000000561 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:26.508 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:26.508 -07 000000561 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:56:26.508 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:56:26.518 -07 000000541 INF: FPGA: 'ZDACW 29148' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:56:26.518 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:26.528 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:26.528 -07 000000551 INF: FPGA: Recv ZDACR 29148
17-03-17 18:56:26.538 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:26.538 -07 000000541 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:56:26.638 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:26.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:26.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:56:26.688 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:56:26.688 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:26.698 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:56:26.698 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:56:26.698 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:26.698 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:26.698 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:26.698 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:56:26.698 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:56:26.888 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:56:26.888 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:56:26.928 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:26.928 -07 000000502 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:56:26.938 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:26.938 -07 000000561 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:26.938 -07 000000561 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:56:26.938 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.171 mm/sec
17-03-17 18:56:27.888 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:27.888 -07 000000486 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:56:27.898 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:27.898 -07 000000561 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:27.918 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:27.918 -07 000000561 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:27.918 -07 000000561 INF: Y Motor: Moved to 62.3960 after 1411 ms (table move)
17-03-17 18:56:27.918 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133431 mm (DAC = 29148)
17-03-17 18:56:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.918 -07 000000431 INF: FPGA: Recv ZSGSRD 30062
17-03-17 18:56:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.928 -07 000000462 INF: FPGA: Recv ZSGSRD 30058
17-03-17 18:56:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.938 -07 000000512 INF: FPGA: Recv ZSGSRD 30063
17-03-17 18:56:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.948 -07 000000433 INF: FPGA: Recv ZSGSRD 30066
17-03-17 18:56:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.958 -07 000000561 INF: FPGA: Recv ZSGSRD 30052
17-03-17 18:56:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.968 -07 000000382 INF: FPGA: Recv ZSGSRD 30053
17-03-17 18:56:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30061
17-03-17 18:56:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.988 -07 000000541 INF: FPGA: Recv ZSGSRD 30055
17-03-17 18:56:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:27.998 -07 000000476 INF: FPGA: Recv ZSGSRD 30059
17-03-17 18:56:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.008 -07 000000012 INF: FPGA: Recv ZSGSRD 30063
17-03-17 18:56:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:28.018 -07 000000502 INF: FPGA: Recv ZPIEZORD 25710
17-03-17 18:56:28.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.028 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.6 V.
17-03-17 18:56:28.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30059 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30060 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30052 (-132.6 uncal um), Max = 30066 (-132.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:28.028 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30059, posNoise = 7, negNoise = 7
17-03-17 18:56:28.028 -07 000000610 INF: Z Motor: After move to -0.133431, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:28.028 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 108 ms (allowed 150 ms), total time = 1521 ms
17-03-17 18:56:28.028 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:28.078 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 18:56:28.078 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:28.078 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.133428744780328. ----------
17-03-17 18:56:28.078 -07 000000610 INF: Cycle	19	Tile	4	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:28.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28971, sync = True, waitForSettling = True)
17-03-17 18:56:28.078 -07 000000610 INF: Z Motor: Moving to -0.132621 mm, started at -0.133429 mm, distance = 0.81 um
17-03-17 18:56:28.078 -07 000000610 INF: FPGA: Xmit ZDACW 28971\n [Z Motor]
17-03-17 18:56:28.078 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:56:28.088 -07 000000610 INF: FPGA: 'ZDACW 28971' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:56:28.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:28.088 -07 000000623 INF: FPGA: Recv ZDACR 28971
17-03-17 18:56:28.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:28.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:28.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29936
17-03-17 18:56:28.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:28.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.258 -07 000000486 INF: FPGA: Recv ZSGSRD 29928
17-03-17 18:56:28.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.268 -07 000000433 INF: FPGA: Recv ZSGSRD 29934
17-03-17 18:56:28.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.278 -07 000000561 INF: FPGA: Recv ZSGSRD 29937
17-03-17 18:56:28.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.288 -07 000000438 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:56:28.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29935
17-03-17 18:56:28.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.308 -07 000000415 INF: FPGA: Recv ZSGSRD 29934
17-03-17 18:56:28.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.318 -07 000000623 INF: FPGA: Recv ZSGSRD 29936
17-03-17 18:56:28.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.328 -07 000000608 INF: FPGA: Recv ZSGSRD 29935
17-03-17 18:56:28.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:28.338 -07 000000486 INF: FPGA: Recv ZSGSRD 29933
17-03-17 18:56:28.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:28.348 -07 000000569 INF: FPGA: Recv ZPIEZORD 25516
17-03-17 18:56:28.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:28.358 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -9.7 V.
17-03-17 18:56:28.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29933 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29934 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29925 (-131.8 uncal um), Max = 29937 (-131.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:56:28.358 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29933, posNoise = 4, negNoise = 8
17-03-17 18:56:28.358 -07 000000610 INF: Z Motor: After move to -0.132621, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:28.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:56:28.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:28.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:28.358 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:28.358 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:28.358 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:28.358 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:28.358 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:28.358 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:28.358 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:56:28.358 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:28.358 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:28.358 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:28.368 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:28.368 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:28.368 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:56:28.368 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:28.378 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:56:28.378 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:56:28.378 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:56:28.378 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:56:28.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29148 150\n [Camera]
17-03-17 18:56:28.578 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:28.978 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:28.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:28.978 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:28.978 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:28.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 18:56:28.978 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:28.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:28.978 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:28.978 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:28.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 18:56:29.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29148 781
17-03-17 18:56:29.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:29.358 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:56:29.358 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:56:29.358 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:29.358 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:56:29.358 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:56:29.358 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:29.358 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:29.368 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:56:29.368 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:29.368 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:56:29.468 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.981281,
17-03-17 18:56:29.508 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:29.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:29.508 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:29.508 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:29.508 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 18:56:29.518 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:29.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:29.518 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:29.518 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:29.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 3087011888, 0x0, 418435064) start.
17-03-17 18:56:29.708 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:56:29.708 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:29.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29148 150' command took 2 ms to send, 1310 ms to get response, and 1321 ms overall
17-03-17 18:56:29.708 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133370
17-03-17 18:56:29.708 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13337 mm
17-03-17 18:56:29.708 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:29.708 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:56:29.708 -07 000000551 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:56:29.708 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:29.708 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29135, sync = True, waitForSettling = False)
17-03-17 18:56:29.708 -07 000000569 INF: Z Motor: Moving to -0.133371 mm, started at -0.132619 mm, distance = -0.75 um
17-03-17 18:56:29.708 -07 000000486 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:56:29.718 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:29.718 -07 000000551 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:29.718 -07 000000551 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:29.718 -07 000000551 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:56:29.718 -07 000000569 INF: FPGA: Xmit ZDACW 29135\n [Z Motor]
17-03-17 18:56:29.718 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:56:29.728 -07 000000569 INF: FPGA: 'ZDACW 29135' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:56:29.728 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:29.728 -07 000000502 INF: FPGA: Recv ZDACR 29135
17-03-17 18:56:29.738 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:29.738 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:29.738 -07 000000569 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 18:56:30.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 3087011888, 0x0, 418435064) end. Duration was 532 ms.
17-03-17 18:56:30.048 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-17 18:56:30.048 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:30.048 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 535 ms.
17-03-17 18:56:30.048 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 18:56:30.048 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:30.058 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:30.058 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:30.058 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-17 18:56:30.058 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms.
17-03-17 18:56:30.108 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:56:30.108 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:56:30.148 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:30.148 -07 000000486 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:56:30.158 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:30.158 -07 000000551 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:30.158 -07 000000551 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:56:30.158 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.102 mm/sec
17-03-17 18:56:31.108 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:31.108 -07 000000569 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:56:31.118 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.118 -07 000000551 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:31.138 -07 000000551 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:31.138 -07 000000551 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:31.138 -07 000000551 INF: Y Motor: Moved to 63.2251 after 1426 ms (table move)
17-03-17 18:56:31.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133371 mm (DAC = 29135)
17-03-17 18:56:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:56:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.148 -07 000000569 INF: FPGA: Recv ZSGSRD 30043
17-03-17 18:56:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.158 -07 000000012 INF: FPGA: Recv ZSGSRD 30044
17-03-17 18:56:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.168 -07 000000462 INF: FPGA: Recv ZSGSRD 30054
17-03-17 18:56:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.178 -07 000000424 INF: FPGA: Recv ZSGSRD 30057
17-03-17 18:56:31.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.188 -07 000000541 INF: FPGA: Recv ZSGSRD 30057
17-03-17 18:56:31.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.198 -07 000000382 INF: FPGA: Recv ZSGSRD 30054
17-03-17 18:56:31.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.208 -07 000000433 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:56:31.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.218 -07 000000608 INF: FPGA: Recv ZSGSRD 30049
17-03-17 18:56:31.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.228 -07 000000569 INF: FPGA: Recv ZSGSRD 30050
17-03-17 18:56:31.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:31.238 -07 000000541 INF: FPGA: Recv ZPIEZORD 25679
17-03-17 18:56:31.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.248 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.6 V.
17-03-17 18:56:31.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30050 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30050 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30043 (-132.5 uncal um), Max = 30057 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:31.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30050, posNoise = 7, negNoise = 7
17-03-17 18:56:31.248 -07 000000610 INF: Z Motor: After move to -0.133371, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:31.248 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 106 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:56:31.248 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:31.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:56:31.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:31.298 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.133370926871052. ----------
17-03-17 18:56:31.298 -07 000000610 INF: Cycle	19	Tile	5	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:31.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28958, sync = True, waitForSettling = True)
17-03-17 18:56:31.298 -07 000000610 INF: Z Motor: Moving to -0.132561 mm, started at -0.133371 mm, distance = 0.81 um
17-03-17 18:56:31.298 -07 000000610 INF: FPGA: Xmit ZDACW 28958\n [Z Motor]
17-03-17 18:56:31.298 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:56:31.308 -07 000000610 INF: FPGA: 'ZDACW 28958' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:31.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:31.308 -07 000000569 INF: FPGA: Recv ZDACR 28958
17-03-17 18:56:31.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:31.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.468 -07 000000438 INF: FPGA: Recv ZSGSRD 29923
17-03-17 18:56:31.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:31.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.478 -07 000000608 INF: FPGA: Recv ZSGSRD 29929
17-03-17 18:56:31.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.488 -07 000000462 INF: FPGA: Recv ZSGSRD 29926
17-03-17 18:56:31.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29932
17-03-17 18:56:31.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.508 -07 000000569 INF: FPGA: Recv ZSGSRD 29928
17-03-17 18:56:31.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.518 -07 000000433 INF: FPGA: Recv ZSGSRD 29920
17-03-17 18:56:31.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.528 -07 000000608 INF: FPGA: Recv ZSGSRD 29923
17-03-17 18:56:31.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29927
17-03-17 18:56:31.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.548 -07 000000512 INF: FPGA: Recv ZSGSRD 29925
17-03-17 18:56:31.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:31.558 -07 000000569 INF: FPGA: Recv ZSGSRD 29923
17-03-17 18:56:31.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:31.568 -07 000000433 INF: FPGA: Recv ZPIEZORD 25525
17-03-17 18:56:31.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:31.578 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.7 V.
17-03-17 18:56:31.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29926 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29926 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29920 (-131.8 uncal um), Max = 29932 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:56:31.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29926, posNoise = 6, negNoise = 6
17-03-17 18:56:31.578 -07 000000610 INF: Z Motor: After move to -0.132561, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:31.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:56:31.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:31.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:31.578 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:31.578 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:31.578 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:31.578 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:31.578 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:31.578 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:31.578 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:31.578 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:31.578 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:31.578 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:31.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:31.588 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:31.588 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:56:31.588 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:31.598 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 18:56:31.598 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:56:31.598 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:56:31.598 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:56:31.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29135 150\n [Camera]
17-03-17 18:56:31.638 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:31.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:31.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:32.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-17 18:56:32.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-17 18:56:32.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-17 18:56:32.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:32.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-17 18:56:32.208 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:32.218 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:32.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:56:32.218 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:32.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:56:32.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29135 781
17-03-17 18:56:32.548 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:32.588 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:56:32.588 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:56:32.588 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:32.588 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:56:32.588 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:56:32.588 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:32.588 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:32.588 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:56:32.598 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:32.598 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:56:32.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:32.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:32.738 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:32.738 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:32.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:32.738 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:32.748 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:32.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:56:32.748 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:32.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:56:32.928 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:32.928 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:32.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29135 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:56:32.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:56:32.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132574324565473. ------
17-03-17 18:56:32.928 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:32.928 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13907 mm
17-03-17 18:56:32.928 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:33.048 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:33.048 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 18:56:33.048 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:56:33.048 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:56:33.048 -07 000000476 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:56:33.048 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30380, sync = True, waitForSettling = False)
17-03-17 18:56:33.048 -07 000000551 INF: Z Motor: Moving to -0.139071 mm, started at -0.132574 mm, distance = -6.50 um
17-03-17 18:56:33.058 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:33.058 -07 000000608 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:56:33.068 -07 000000551 INF: FPGA: Xmit ZDACW 30380\n [Z Motor]
17-03-17 18:56:33.068 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:56:33.068 -07 000000476 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:33.068 -07 000000476 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:33.068 -07 000000476 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:56:33.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:56:33.078 -07 000000551 INF: FPGA: 'ZDACW 30380' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:56:33.078 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:33.078 -07 000000012 INF: FPGA: Recv ZDACR 30380
17-03-17 18:56:33.088 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:33.088 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:33.088 -07 000000551 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:56:33.128 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:56:33.128 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:56:33.128 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:33.128 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:56:33.128 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:56:33.128 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:33.128 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:33.128 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:56:33.138 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:33.138 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:56:33.248 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:56:33.248 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:56:33.458 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:56:33.458 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:56:33.498 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:33.498 -07 000000012 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:56:33.508 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:33.508 -07 000000476 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:33.508 -07 000000476 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:56:33.508 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 18:56:34.458 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:34.458 -07 000000486 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:56:34.468 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:34.468 -07 000000476 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:34.478 -07 000000476 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:34.478 -07 000000476 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:34.478 -07 000000476 INF: Y Motor: Moved to 64.0576 after 1430 ms (table move)
17-03-17 18:56:34.478 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139071 mm (DAC = 30380)
17-03-17 18:56:34.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.488 -07 000000424 INF: FPGA: Recv ZSGSRD 30937
17-03-17 18:56:34.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.498 -07 000000012 INF: FPGA: Recv ZSGSRD 30940
17-03-17 18:56:34.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.518 -07 000000382 INF: FPGA: Recv ZSGSRD 30945
17-03-17 18:56:34.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:34.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.528 -07 000000569 INF: FPGA: Recv ZSGSRD 30947
17-03-17 18:56:34.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.538 -07 000000424 INF: FPGA: Recv ZSGSRD 30939
17-03-17 18:56:34.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.548 -07 000000438 INF: FPGA: Recv ZSGSRD 30931
17-03-17 18:56:34.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.558 -07 000000462 INF: FPGA: Recv ZSGSRD 30930
17-03-17 18:56:34.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.568 -07 000000486 INF: FPGA: Recv ZSGSRD 30936
17-03-17 18:56:34.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.578 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.578 -07 000000431 INF: FPGA: Recv ZSGSRD 30938
17-03-17 18:56:34.588 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:34.588 -07 000000415 INF: FPGA: Recv ZSGSRD 30941
17-03-17 18:56:34.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.598 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:34.598 -07 000000541 INF: FPGA: Recv ZPIEZORD 26854
17-03-17 18:56:34.608 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:34.608 -07 000000433 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.0 V.
17-03-17 18:56:34.608 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30938 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30938 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30930 (-138.2 uncal um), Max = 30947 (-138.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:56:34.608 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30938, posNoise = 9, negNoise = 8
17-03-17 18:56:34.608 -07 000000433 INF: Z Motor: After move to -0.139071, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:34.608 -07 000000433 INF: Z Motor: Settle wait time = 1434 ms, measure time = 120 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:56:34.608 -07 000000433 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:34.638 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 18:56:34.638 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:34.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:34.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:34.638 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:34.638 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:34.638 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:56:34.638 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:34.638 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:34.638 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:56:34.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:34.648 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:56:34.658 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:56:34.658 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:56:34.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:56:34.708 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:56:34.828 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.004458,
17-03-17 18:56:34.908 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:56:34.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:56:34.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:56:34.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:56:34.948 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:56:34.948 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:56:34.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:56:35.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:56:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:35.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:56:35.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:56:35.048 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:35.048 -07 000000424 INF: Autofocus start
17-03-17 18:56:35.048 -07 000000424 INF: MeasureProfile start
17-03-17 18:56:35.048 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:35.058 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:35.058 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:56:35.058 -07 000000424 INF: MeasureProfile done
17-03-17 18:56:35.058 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:56:35.058 -07 000000424 INF: Autofocus finished
17-03-17 18:56:35.258 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:56:35.258 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 18:56:35.258 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.139075627252935. ----------
17-03-17 18:56:35.268 -07 000000610 INF: Cycle	19	Tile	6	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:35.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28888, sync = True, waitForSettling = True)
17-03-17 18:56:35.268 -07 000000610 INF: Z Motor: Moving to -0.132241 mm, started at -0.139076 mm, distance = 6.83 um
17-03-17 18:56:35.268 -07 000000610 INF: FPGA: Xmit ZDACW 28888\n [Z Motor]
17-03-17 18:56:35.268 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:56:35.278 -07 000000610 INF: FPGA: 'ZDACW 28888' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:35.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:35.278 -07 000000486 INF: FPGA: Recv ZDACR 28888
17-03-17 18:56:35.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.438 -07 000000541 INF: FPGA: Recv ZSGSRD 29877
17-03-17 18:56:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.448 -07 000000433 INF: FPGA: Recv ZSGSRD 29881
17-03-17 18:56:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29877
17-03-17 18:56:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.468 -07 000000561 INF: FPGA: Recv ZSGSRD 29875
17-03-17 18:56:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.478 -07 000000462 INF: FPGA: Recv ZSGSRD 29871
17-03-17 18:56:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.488 -07 000000382 INF: FPGA: Recv ZSGSRD 29875
17-03-17 18:56:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.498 -07 000000433 INF: FPGA: Recv ZSGSRD 29878
17-03-17 18:56:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.508 -07 000000424 INF: FPGA: Recv ZSGSRD 29877
17-03-17 18:56:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29876
17-03-17 18:56:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:35.528 -07 000000569 INF: FPGA: Recv ZSGSRD 29875
17-03-17 18:56:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:35.538 -07 000000608 INF: FPGA: Recv ZPIEZORD 25423
17-03-17 18:56:35.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:35.548 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.8 V.
17-03-17 18:56:35.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29876 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29876 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29871 (-131.4 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:56:35.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29876, posNoise = 5, negNoise = 5
17-03-17 18:56:35.548 -07 000000610 INF: Z Motor: After move to -0.132241, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:35.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:56:35.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:35.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:35.548 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:35.548 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:35.548 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:35.548 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:35.548 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:35.548 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:35.548 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:56:35.548 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:35.548 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:35.548 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:35.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:56:35.558 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:35.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:35.558 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:35.568 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:56:35.568 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:56:35.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:56:35.568 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:56:35.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29065 150\n [Camera]
17-03-17 18:56:35.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:36.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:36.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:36.168 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:36.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:36.168 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:36.178 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:36.178 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:36.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:56:36.178 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:36.178 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:56:36.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29065 782
17-03-17 18:56:36.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:36.548 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 18:56:36.548 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:56:36.548 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:36.548 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:56:36.548 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:56:36.548 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:36.558 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:36.558 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:36.558 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:56:36.558 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:56:36.638 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:36.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:36.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:36.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:36.708 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:36.708 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:36.708 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:56:36.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:36.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:36.708 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:36.708 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:36.708 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) start.
17-03-17 18:56:36.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:36.898 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:36.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29065 150' command took 2 ms to send, 1311 ms to get response, and 1321 ms overall
17-03-17 18:56:36.898 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132793
17-03-17 18:56:36.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13279 mm
17-03-17 18:56:36.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:36.898 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:56:36.898 -07 000000551 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:56:36.898 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29009, sync = True, waitForSettling = False)
17-03-17 18:56:36.898 -07 000000431 INF: Z Motor: Moving to -0.132795 mm, started at -0.132253 mm, distance = -0.54 um
17-03-17 18:56:36.898 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:36.908 -07 000000431 INF: FPGA: Xmit ZDACW 29009\n [Z Motor]
17-03-17 18:56:36.908 -07 000000486 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:56:36.908 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:56:36.908 -07 000000551 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:36.908 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:56:36.908 -07 000000551 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:36.908 -07 000000551 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:56:36.918 -07 000000431 INF: FPGA: 'ZDACW 29009' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:56:36.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:36.918 -07 000000623 INF: FPGA: Recv ZDACR 29009
17-03-17 18:56:36.928 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:36.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:36.928 -07 000000431 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:56:37.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 18:56:37.118 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:56:37.118 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:37.118 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 18:56:37.118 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:56:37.118 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:37.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:56:37.128 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 12 ms.
17-03-17 18:56:37.128 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-17 18:56:37.138 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 423 ms.
17-03-17 18:56:37.308 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:56:37.308 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-17 18:56:37.348 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:37.358 -07 000000623 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:56:37.358 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:56:37.358 -07 000000551 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:37.358 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:56:37.358 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.835 mm, average velocity = 2.114 mm/sec
17-03-17 18:56:38.308 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:38.308 -07 000000476 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:56:38.318 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:38.318 -07 000000551 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:38.338 -07 000000551 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:38.338 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:38.338 -07 000000551 INF: Y Motor: Moved to 64.8794 after 1433 ms (table move)
17-03-17 18:56:38.338 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132795 mm (DAC = 29009)
17-03-17 18:56:38.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.338 -07 000000476 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:56:38.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:38.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.348 -07 000000431 INF: FPGA: Recv ZSGSRD 29957
17-03-17 18:56:38.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.358 -07 000000623 INF: FPGA: Recv ZSGSRD 29962
17-03-17 18:56:38.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:56:38.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:56:38.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.388 -07 000000476 INF: FPGA: Recv ZSGSRD 29962
17-03-17 18:56:38.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.398 -07 000000512 INF: FPGA: Recv ZSGSRD 29962
17-03-17 18:56:38.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.408 -07 000000431 INF: FPGA: Recv ZSGSRD 29955
17-03-17 18:56:38.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.418 -07 000000541 INF: FPGA: Recv ZSGSRD 29954
17-03-17 18:56:38.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.428 -07 000000551 INF: FPGA: Recv ZSGSRD 29958
17-03-17 18:56:38.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:38.438 -07 000000623 INF: FPGA: Recv ZPIEZORD 25602
17-03-17 18:56:38.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.448 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -9.6 V.
17-03-17 18:56:38.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29961 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29962 (-132.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29954 (-132.0 uncal um), Max = 29970 (-132.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:38.448 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29961, posNoise = 9, negNoise = 7
17-03-17 18:56:38.448 -07 000000610 INF: Z Motor: After move to -0.132795, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:38.448 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:56:38.448 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:38.498 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:56:38.498 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:38.498 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.132799171990435. ----------
17-03-17 18:56:38.498 -07 000000610 INF: Cycle	19	Tile	7	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:38.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28832, sync = True, waitForSettling = True)
17-03-17 18:56:38.498 -07 000000610 INF: Z Motor: Moving to -0.131984 mm, started at -0.132799 mm, distance = 0.81 um
17-03-17 18:56:38.498 -07 000000610 INF: FPGA: Xmit ZDACW 28832\n [Z Motor]
17-03-17 18:56:38.508 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:56:38.508 -07 000000610 INF: FPGA: 'ZDACW 28832' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 18:56:38.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:38.508 -07 000000569 INF: FPGA: Recv ZDACR 28832
17-03-17 18:56:38.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:56:38.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.668 -07 000000415 INF: FPGA: Recv ZSGSRD 29834
17-03-17 18:56:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.678 -07 000000486 INF: FPGA: Recv ZSGSRD 29839
17-03-17 18:56:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.688 -07 000000541 INF: FPGA: Recv ZSGSRD 29841
17-03-17 18:56:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.698 -07 000000502 INF: FPGA: Recv ZSGSRD 29833
17-03-17 18:56:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.708 -07 000000569 INF: FPGA: Recv ZSGSRD 29832
17-03-17 18:56:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.718 -07 000000433 INF: FPGA: Recv ZSGSRD 29835
17-03-17 18:56:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.728 -07 000000431 INF: FPGA: Recv ZSGSRD 29838
17-03-17 18:56:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.738 -07 000000541 INF: FPGA: Recv ZSGSRD 29829
17-03-17 18:56:38.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.748 -07 000000012 INF: FPGA: Recv ZSGSRD 29837
17-03-17 18:56:38.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:38.758 -07 000000569 INF: FPGA: Recv ZSGSRD 29838
17-03-17 18:56:38.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:38.768 -07 000000424 INF: FPGA: Recv ZPIEZORD 25411
17-03-17 18:56:38.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:38.778 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.7 V.
17-03-17 18:56:38.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29836 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29836 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29829 (-131.2 uncal um), Max = 29841 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:38.778 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29836, posNoise = 5, negNoise = 7
17-03-17 18:56:38.778 -07 000000610 INF: Z Motor: After move to -0.131984, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:38.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:56:38.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:38.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:38.778 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:38.778 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:38.778 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:38.778 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:38.778 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:38.778 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:38.778 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:38.778 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:38.778 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:38.778 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:38.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:56:38.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:38.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:38.788 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:38.798 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:56:38.798 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:56:38.798 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:56:38.798 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:56:38.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29009 150\n [Camera]
17-03-17 18:56:38.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:39.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:39.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:39.398 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:39.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:39.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) start.
17-03-17 18:56:39.398 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:39.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:39.398 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:39.398 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:39.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:56:39.588 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29009 781
17-03-17 18:56:39.738 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:39.778 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:56:39.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:56:39.778 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:56:39.778 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:39.778 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:56:39.778 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:39.778 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:39.778 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:39.778 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:56:39.788 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:56:39.928 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:39.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:39.928 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:39.928 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:39.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:56:39.928 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:39.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:39.928 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:39.928 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:39.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:56:40.118 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:40.118 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:40.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29009 150' command took 2 ms to send, 1318 ms to get response, and 1320 ms overall
17-03-17 18:56:40.118 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132599
17-03-17 18:56:40.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13260 mm
17-03-17 18:56:40.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:40.128 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:56:40.128 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:56:40.128 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:40.128 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 28966, sync = True, waitForSettling = False)
17-03-17 18:56:40.128 -07 000000623 INF: Z Motor: Moving to -0.132598 mm, started at -0.131996 mm, distance = -0.60 um
17-03-17 18:56:40.128 -07 000000561 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:56:40.138 -07 000000623 INF: FPGA: Xmit ZDACW 28966\n [Z Motor]
17-03-17 18:56:40.138 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:40.138 -07 000000462 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:40.138 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:40.138 -07 000000462 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:56:40.138 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:56:40.148 -07 000000623 INF: FPGA: 'ZDACW 28966' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:56:40.148 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:40.148 -07 000000569 INF: FPGA: Recv ZDACR 28966
17-03-17 18:56:40.158 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:40.158 -07 000000623 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 18:56:40.158 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:40.188 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.001704,
17-03-17 18:56:40.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:56:40.318 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:56:40.318 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:40.318 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:56:40.318 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:56:40.318 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:40.318 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:40.318 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:56:40.328 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:40.328 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:56:40.528 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:56:40.528 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:56:40.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:40.568 -07 000000438 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:56:40.578 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:40.578 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:40.578 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:56:40.578 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 18:56:41.528 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:41.528 -07 000000561 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:56:41.538 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:41.538 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:41.558 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:41.558 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:41.558 -07 000000462 INF: Y Motor: Moved to 65.7148 after 1426 ms (table move)
17-03-17 18:56:41.558 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132598 mm (DAC = 28966)
17-03-17 18:56:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.558 -07 000000551 INF: FPGA: Recv ZSGSRD 29934
17-03-17 18:56:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.568 -07 000000424 INF: FPGA: Recv ZSGSRD 29930
17-03-17 18:56:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.578 -07 000000486 INF: FPGA: Recv ZSGSRD 29930
17-03-17 18:56:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.588 -07 000000623 INF: FPGA: Recv ZSGSRD 29935
17-03-17 18:56:41.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29938
17-03-17 18:56:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.608 -07 000000462 INF: FPGA: Recv ZSGSRD 29936
17-03-17 18:56:41.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.618 -07 000000561 INF: FPGA: Recv ZSGSRD 29927
17-03-17 18:56:41.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.628 -07 000000486 INF: FPGA: Recv ZSGSRD 29928
17-03-17 18:56:41.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.638 -07 000000382 INF: FPGA: Recv ZSGSRD 29929
17-03-17 18:56:41.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:41.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:41.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29927
17-03-17 18:56:41.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:41.658 -07 000000569 INF: FPGA: Recv ZPIEZORD 25556
17-03-17 18:56:41.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.668 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -9.6 V.
17-03-17 18:56:41.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29931 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29930 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29927 (-131.8 uncal um), Max = 29938 (-131.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:56:41.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29931, posNoise = 7, negNoise = 4
17-03-17 18:56:41.668 -07 000000610 INF: Z Motor: After move to -0.132598, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:41.668 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:56:41.668 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:41.718 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 18:56:41.718 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:41.718 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.132606445626182. ----------
17-03-17 18:56:41.718 -07 000000610 INF: Cycle	19	Tile	8	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:41.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28790, sync = True, waitForSettling = True)
17-03-17 18:56:41.718 -07 000000610 INF: Z Motor: Moving to -0.131792 mm, started at -0.132606 mm, distance = 0.81 um
17-03-17 18:56:41.718 -07 000000610 INF: FPGA: Xmit ZDACW 28790\n [Z Motor]
17-03-17 18:56:41.718 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:56:41.728 -07 000000610 INF: FPGA: 'ZDACW 28790' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:41.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:41.728 -07 000000608 INF: FPGA: Recv ZDACR 28790
17-03-17 18:56:41.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:41.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.888 -07 000000431 INF: FPGA: Recv ZSGSRD 29806
17-03-17 18:56:41.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:41.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.898 -07 000000433 INF: FPGA: Recv ZSGSRD 29810
17-03-17 18:56:41.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.908 -07 000000512 INF: FPGA: Recv ZSGSRD 29804
17-03-17 18:56:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.918 -07 000000476 INF: FPGA: Recv ZSGSRD 29807
17-03-17 18:56:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.928 -07 000000462 INF: FPGA: Recv ZSGSRD 29804
17-03-17 18:56:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.938 -07 000000431 INF: FPGA: Recv ZSGSRD 29808
17-03-17 18:56:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.948 -07 000000433 INF: FPGA: Recv ZSGSRD 29803
17-03-17 18:56:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.958 -07 000000486 INF: FPGA: Recv ZSGSRD 29806
17-03-17 18:56:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.968 -07 000000569 INF: FPGA: Recv ZSGSRD 29807
17-03-17 18:56:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:41.978 -07 000000551 INF: FPGA: Recv ZSGSRD 29802
17-03-17 18:56:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:41.988 -07 000000431 INF: FPGA: Recv ZPIEZORD 25401
17-03-17 18:56:41.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:41.998 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.7 V.
17-03-17 18:56:41.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29802 (-131.0 uncal um), Max = 29810 (-131.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:56:41.998 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 4, negNoise = 4
17-03-17 18:56:41.998 -07 000000610 INF: Z Motor: After move to -0.131792, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:41.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:56:41.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:41.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:41.998 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:41.998 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:41.998 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:41.998 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:41.998 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:41.998 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:41.998 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:56:41.998 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:41.998 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:56:41.998 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:42.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:56:42.008 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:42.008 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:56:42.008 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:42.018 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:56:42.018 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:56:42.018 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:56:42.018 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:56:42.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28966 150\n [Camera]
17-03-17 18:56:42.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:42.618 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:42.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:42.618 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:42.618 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:42.618 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:56:42.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:42.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:42.628 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:42.628 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:42.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:56:42.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28966 781
17-03-17 18:56:42.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 18:56:42.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:56:42.998 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:56:42.998 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:42.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:56:42.998 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:56:42.998 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:42.998 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:43.008 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:43.008 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:56:43.008 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:56:43.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:43.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:43.158 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:43.158 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:43.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:56:43.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:43.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:43.158 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:43.158 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:43.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:56:43.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:56:43.348 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:43.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28966 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-17 18:56:43.348 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.132089
17-03-17 18:56:43.348 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13209 mm
17-03-17 18:56:43.348 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:43.348 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:56:43.348 -07 000000382 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:56:43.348 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:43.348 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28855, sync = True, waitForSettling = False)
17-03-17 18:56:43.348 -07 000000569 INF: Z Motor: Moving to -0.132090 mm, started at -0.131803 mm, distance = -0.29 um
17-03-17 18:56:43.348 -07 000000541 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:56:43.358 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:56:43.358 -07 000000382 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:43.358 -07 000000569 INF: FPGA: Xmit ZDACW 28855\n [Z Motor]
17-03-17 18:56:43.358 -07 000000382 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:43.358 -07 000000382 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:56:43.358 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:56:43.368 -07 000000569 INF: FPGA: 'ZDACW 28855' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:56:43.368 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:43.378 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:43.378 -07 000000476 INF: FPGA: Recv ZDACR 28855
17-03-17 18:56:43.388 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:43.388 -07 000000569 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:56:43.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:56:43.538 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:56:43.538 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:43.538 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:56:43.538 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:56:43.538 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:43.538 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:43.538 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:56:43.538 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:43.548 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:56:43.738 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:56:43.738 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:56:43.778 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:43.778 -07 000000569 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:56:43.788 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:43.788 -07 000000382 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:43.788 -07 000000382 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:56:43.788 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.165 mm/sec
17-03-17 18:56:44.738 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:44.738 -07 000000569 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:56:44.748 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.748 -07 000000382 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:44.768 -07 000000382 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:44.768 -07 000000382 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:44.768 -07 000000382 INF: Y Motor: Moved to 66.5400 after 1415 ms (table move)
17-03-17 18:56:44.768 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132090 mm (DAC = 28855)
17-03-17 18:56:44.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.768 -07 000000462 INF: FPGA: Recv ZSGSRD 29844
17-03-17 18:56:44.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:44.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.778 -07 000000433 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:56:44.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:44.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.788 -07 000000476 INF: FPGA: Recv ZSGSRD 29844
17-03-17 18:56:44.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.798 -07 000000608 INF: FPGA: Recv ZSGSRD 29861
17-03-17 18:56:44.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.808 -07 000000382 INF: FPGA: Recv ZSGSRD 29852
17-03-17 18:56:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.818 -07 000000462 INF: FPGA: Recv ZSGSRD 29853
17-03-17 18:56:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.828 -07 000000438 INF: FPGA: Recv ZSGSRD 29855
17-03-17 18:56:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.838 -07 000000561 INF: FPGA: Recv ZSGSRD 29848
17-03-17 18:56:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.848 -07 000000415 INF: FPGA: Recv ZSGSRD 29847
17-03-17 18:56:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:44.858 -07 000000512 INF: FPGA: Recv ZSGSRD 29843
17-03-17 18:56:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:44.868 -07 000000476 INF: FPGA: Recv ZPIEZORD 25501
17-03-17 18:56:44.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.878 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.6 V.
17-03-17 18:56:44.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29850 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29849 (-131.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29843 (-131.3 uncal um), Max = 29861 (-131.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:44.878 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29850, posNoise = 11, negNoise = 7
17-03-17 18:56:44.878 -07 000000610 INF: Z Motor: After move to -0.132090, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:44.878 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 106 ms (allowed 150 ms), total time = 1522 ms
17-03-17 18:56:44.878 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:44.928 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 18:56:44.928 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:44.928 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.1320860844427. ----------
17-03-17 18:56:44.928 -07 000000610 INF: Cycle	19	Tile	9	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:44.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28678, sync = True, waitForSettling = True)
17-03-17 18:56:44.928 -07 000000610 INF: Z Motor: Moving to -0.131279 mm, started at -0.132086 mm, distance = 0.81 um
17-03-17 18:56:44.928 -07 000000610 INF: FPGA: Xmit ZDACW 28678\n [Z Motor]
17-03-17 18:56:44.928 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:56:44.938 -07 000000610 INF: FPGA: 'ZDACW 28678' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:56:44.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:44.938 -07 000000486 INF: FPGA: Recv ZDACR 28678
17-03-17 18:56:44.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:44.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:45.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.098 -07 000000551 INF: FPGA: Recv ZSGSRD 29726
17-03-17 18:56:45.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:45.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.108 -07 000000415 INF: FPGA: Recv ZSGSRD 29733
17-03-17 18:56:45.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.118 -07 000000561 INF: FPGA: Recv ZSGSRD 29733
17-03-17 18:56:45.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.128 -07 000000608 INF: FPGA: Recv ZSGSRD 29721
17-03-17 18:56:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.138 -07 000000512 INF: FPGA: Recv ZSGSRD 29728
17-03-17 18:56:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.148 -07 000000551 INF: FPGA: Recv ZSGSRD 29721
17-03-17 18:56:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.158 -07 000000486 INF: FPGA: Recv ZSGSRD 29721
17-03-17 18:56:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.168 -07 000000561 INF: FPGA: Recv ZSGSRD 29725
17-03-17 18:56:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.178 -07 000000382 INF: FPGA: Recv ZSGSRD 29723
17-03-17 18:56:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:45.188 -07 000000476 INF: FPGA: Recv ZSGSRD 29727
17-03-17 18:56:45.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:45.198 -07 000000431 INF: FPGA: Recv ZPIEZORD 25321
17-03-17 18:56:45.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:45.208 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.7 V.
17-03-17 18:56:45.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29726 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29726 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29721 (-130.5 uncal um), Max = 29733 (-130.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:56:45.208 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29726, posNoise = 7, negNoise = 5
17-03-17 18:56:45.208 -07 000000610 INF: Z Motor: After move to -0.131279, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:45.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:56:45.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:45.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:45.208 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:45.208 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:45.208 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:45.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:45.208 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:45.208 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:45.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:45.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:45.208 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:45.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:45.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:45.218 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:45.218 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:56:45.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:45.228 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:56:45.228 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:56:45.228 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:56:45.228 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:56:45.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28855 150\n [Camera]
17-03-17 18:56:45.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:45.548 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.008536,
17-03-17 18:56:45.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:45.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:45.828 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:45.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:45.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:45.828 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:45.828 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:56:45.838 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:45.968 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:45.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:56:46.018 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28855 781
17-03-17 18:56:46.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:46.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:56:46.228 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:56:46.228 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:46.228 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:46.228 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:56:46.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:56:46.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 18:56:46.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:46.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:56:46.338 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 18:56:46.368 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:46.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:46.368 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:46.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:46.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:46.368 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:46.378 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:46.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:56:46.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:46.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:56:46.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:56:46.558 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:46.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28855 150' command took 2 ms to send, 1311 ms to get response, and 1321 ms overall
17-03-17 18:56:46.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:56:46.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131289482137121. ------
17-03-17 18:56:46.558 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:46.558 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13798 mm
17-03-17 18:56:46.558 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:46.568 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:56:46.568 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:56:46.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:46.568 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:46.568 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:46.568 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30143, sync = True, waitForSettling = False)
17-03-17 18:56:46.568 -07 000000382 INF: Z Motor: Moving to -0.137986 mm, started at -0.131289 mm, distance = -6.70 um
17-03-17 18:56:46.568 -07 000000561 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:56:46.578 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:46.578 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:46.578 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:46.578 -07 000000462 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:56:46.578 -07 000000382 INF: FPGA: Xmit ZDACW 30143\n [Z Motor]
17-03-17 18:56:46.578 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:56:46.588 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:56:46.588 -07 000000382 INF: FPGA: 'ZDACW 30143' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:56:46.598 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:46.608 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:46.608 -07 000000424 INF: FPGA: Recv ZDACR 30143
17-03-17 18:56:46.618 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:56:46.618 -07 000000382 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:56:46.638 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:46.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:46.748 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:56:46.748 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:56:46.748 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:46.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:56:46.748 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:56:46.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:46.758 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:46.758 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:56:46.758 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:46.768 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:56:46.788 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:56:46.788 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:56:46.968 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:56:46.968 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:56:47.008 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:47.008 -07 000000608 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:56:47.018 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:47.018 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:47.018 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:56:47.018 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:56:47.968 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:47.968 -07 000000433 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:56:47.978 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:47.978 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:47.998 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:47.998 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:47.998 -07 000000462 INF: Y Motor: Moved to 67.3726 after 1431 ms (table move)
17-03-17 18:56:47.998 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137986 mm (DAC = 30143)
17-03-17 18:56:47.998 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:47.998 -07 000000551 INF: FPGA: Recv ZSGSRD 30768
17-03-17 18:56:48.008 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:48.008 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.008 -07 000000512 INF: FPGA: Recv ZSGSRD 30770
17-03-17 18:56:48.018 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.018 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.018 -07 000000486 INF: FPGA: Recv ZSGSRD 30768
17-03-17 18:56:48.028 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.028 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.028 -07 000000502 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:56:48.038 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.038 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.038 -07 000000569 INF: FPGA: Recv ZSGSRD 30774
17-03-17 18:56:48.048 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.048 -07 000000415 INF: FPGA: Recv ZSGSRD 30773
17-03-17 18:56:48.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.058 -07 000000462 INF: FPGA: Recv ZSGSRD 30771
17-03-17 18:56:48.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.068 -07 000000608 INF: FPGA: Recv ZSGSRD 30771
17-03-17 18:56:48.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.078 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.078 -07 000000569 INF: FPGA: Recv ZSGSRD 30763
17-03-17 18:56:48.088 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.088 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:48.088 -07 000000415 INF: FPGA: Recv ZSGSRD 30765
17-03-17 18:56:48.098 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.098 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:48.098 -07 000000431 INF: FPGA: Recv ZPIEZORD 26700
17-03-17 18:56:48.108 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.108 -07 000000623 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -9.0 V.
17-03-17 18:56:48.108 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30769 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30769 (-137.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30763 (-137.2 uncal um), Max = 30774 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:56:48.108 -07 000000623 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30769, posNoise = 5, negNoise = 6
17-03-17 18:56:48.108 -07 000000623 INF: Z Motor: After move to -0.137986, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:48.108 -07 000000623 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 18:56:48.108 -07 000000623 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:48.158 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 18:56:48.158 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:48.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:48.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:48.158 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:48.158 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:48.158 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:56:48.158 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:48.168 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:48.168 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:56:48.168 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:48.168 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:56:48.178 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:56:48.178 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:56:48.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:56:48.228 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:56:48.428 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:56:48.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:56:48.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:56:48.538 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:56:48.538 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:56:48.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 341 ms to get response, and 353 ms overall
17-03-17 18:56:48.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 18:56:48.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:56:48.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:48.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:56:48.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-17 18:56:48.738 -07 000000476 INF: Autofocus start
17-03-17 18:56:48.738 -07 000000476 INF: MeasureProfile start
17-03-17 18:56:48.738 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:56:48.738 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:56:48.748 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:48.748 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:56:48.748 -07 000000476 INF: MeasureProfile done
17-03-17 18:56:48.748 -07 000000476 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:56:48.748 -07 000000476 INF: Autofocus finished
17-03-17 18:56:48.948 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:56:48.948 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:56:48.948 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137989935400978. ----------
17-03-17 18:56:48.958 -07 000000610 INF: Cycle	19	Tile	10	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:48.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28684, sync = True, waitForSettling = True)
17-03-17 18:56:48.958 -07 000000610 INF: Z Motor: Moving to -0.131307 mm, started at -0.137990 mm, distance = 6.68 um
17-03-17 18:56:48.958 -07 000000610 INF: FPGA: Xmit ZDACW 28684\n [Z Motor]
17-03-17 18:56:48.958 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:56:48.968 -07 000000610 INF: FPGA: 'ZDACW 28684' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:48.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:48.968 -07 000000438 INF: FPGA: Recv ZDACR 28684
17-03-17 18:56:48.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:48.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:49.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29728
17-03-17 18:56:49.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.138 -07 000000476 INF: FPGA: Recv ZSGSRD 29730
17-03-17 18:56:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.148 -07 000000415 INF: FPGA: Recv ZSGSRD 29730
17-03-17 18:56:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.158 -07 000000502 INF: FPGA: Recv ZSGSRD 29729
17-03-17 18:56:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.168 -07 000000551 INF: FPGA: Recv ZSGSRD 29727
17-03-17 18:56:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.178 -07 000000486 INF: FPGA: Recv ZSGSRD 29731
17-03-17 18:56:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.188 -07 000000608 INF: FPGA: Recv ZSGSRD 29727
17-03-17 18:56:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29732
17-03-17 18:56:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.208 -07 000000502 INF: FPGA: Recv ZSGSRD 29726
17-03-17 18:56:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:49.218 -07 000000569 INF: FPGA: Recv ZSGSRD 29729
17-03-17 18:56:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:49.228 -07 000000438 INF: FPGA: Recv ZPIEZORD 25313
17-03-17 18:56:49.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:49.238 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.7 V.
17-03-17 18:56:49.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29729 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29729 (-130.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29726 (-130.5 uncal um), Max = 29732 (-130.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:56:49.238 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29729, posNoise = 3, negNoise = 3
17-03-17 18:56:49.238 -07 000000610 INF: Z Motor: After move to -0.131307, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:49.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:56:49.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:49.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:49.238 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:49.238 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:49.238 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:49.238 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:49.238 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:49.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:49.238 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:49.238 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:49.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:49.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:49.248 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:56:49.248 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:49.248 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:49.248 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:49.258 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:56:49.258 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:56:49.258 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:56:49.258 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:56:49.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28860 150\n [Camera]
17-03-17 18:56:49.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:49.858 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:49.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:49.858 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:49.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:49.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:49.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:49.858 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:49.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) start.
17-03-17 18:56:49.868 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:49.868 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:56:50.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28860 781
17-03-17 18:56:50.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:50.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:56:50.238 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:56:50.238 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:50.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:56:50.238 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:56:50.238 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:50.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:50.238 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:56:50.238 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:50.248 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:56:50.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:50.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:50.388 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:50.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:50.398 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:50.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:50.398 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) start.
17-03-17 18:56:50.398 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:50.398 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:50.398 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:56:50.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:56:50.578 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:50.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28860 150' command took 4 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-17 18:56:50.588 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131258
17-03-17 18:56:50.588 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13126 mm
17-03-17 18:56:50.588 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:50.588 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:56:50.588 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:56:50.588 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 28673, sync = True, waitForSettling = False)
17-03-17 18:56:50.588 -07 000000551 INF: Z Motor: Moving to -0.131257 mm, started at -0.131309 mm, distance = 0.05 um
17-03-17 18:56:50.598 -07 000000551 INF: FPGA: Xmit ZDACW 28673\n [Z Motor]
17-03-17 18:56:50.598 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:56:50.608 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:50.608 -07 000000551 INF: FPGA: 'ZDACW 28673' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:56:50.608 -07 000000608 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:56:50.618 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:56:50.618 -07 000000561 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:50.618 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:50.618 -07 000000502 INF: FPGA: Recv ZDACR 28673
17-03-17 18:56:50.618 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:50.618 -07 000000561 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:56:50.628 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:50.628 -07 000000551 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 18:56:50.628 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:50.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:56:50.778 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:56:50.778 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:50.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:56:50.778 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:56:50.778 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:50.788 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:56:50.788 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:56:50.788 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:56:50.798 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:56:50.908 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.031682,
17-03-17 18:56:50.998 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:56:50.998 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:56:51.038 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:51.038 -07 000000502 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:56:51.048 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:51.048 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:51.048 -07 000000561 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:56:51.048 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.188 mm/sec
17-03-17 18:56:51.638 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:51.998 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:51.998 -07 000000551 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:56:52.008 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.008 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:52.018 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:52.018 -07 000000561 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:52.018 -07 000000561 INF: Y Motor: Moved to 68.2056 after 1432 ms (table move)
17-03-17 18:56:52.028 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131257 mm (DAC = 28673)
17-03-17 18:56:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.028 -07 000000424 INF: FPGA: Recv ZSGSRD 29722
17-03-17 18:56:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:56:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.038 -07 000000541 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:56:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.048 -07 000000569 INF: FPGA: Recv ZSGSRD 29727
17-03-17 18:56:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.058 -07 000000561 INF: FPGA: Recv ZSGSRD 29724
17-03-17 18:56:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.068 -07 000000415 INF: FPGA: Recv ZSGSRD 29725
17-03-17 18:56:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.088 -07 000000438 INF: FPGA: Recv ZSGSRD 29720
17-03-17 18:56:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.098 -07 000000608 INF: FPGA: Recv ZSGSRD 29716
17-03-17 18:56:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.108 -07 000000424 INF: FPGA: Recv ZSGSRD 29717
17-03-17 18:56:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.118 -07 000000551 INF: FPGA: Recv ZSGSRD 29723
17-03-17 18:56:52.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.128 -07 000000462 INF: FPGA: Recv ZSGSRD 29733
17-03-17 18:56:52.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:52.138 -07 000000012 INF: FPGA: Recv ZPIEZORD 25358
17-03-17 18:56:52.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.148 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.375 V. Piezo Error = -9.6 V.
17-03-17 18:56:52.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29722 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29722 (-130.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29715 (-130.4 uncal um), Max = 29733 (-130.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:52.148 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29722, posNoise = 11, negNoise = 7
17-03-17 18:56:52.148 -07 000000610 INF: Z Motor: After move to -0.131257, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:52.148 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 118 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:56:52.148 -07 000000610 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:52.188 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:56:52.188 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:52.188 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.131263785288554. ----------
17-03-17 18:56:52.188 -07 000000610 INF: Cycle	19	Tile	11	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:52.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28496, sync = True, waitForSettling = True)
17-03-17 18:56:52.188 -07 000000610 INF: Z Motor: Moving to -0.130446 mm, started at -0.131264 mm, distance = 0.82 um
17-03-17 18:56:52.188 -07 000000610 INF: FPGA: Xmit ZDACW 28496\n [Z Motor]
17-03-17 18:56:52.188 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:56:52.198 -07 000000610 INF: FPGA: 'ZDACW 28496' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:52.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:52.198 -07 000000623 INF: FPGA: Recv ZDACR 28496
17-03-17 18:56:52.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:52.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.358 -07 000000424 INF: FPGA: Recv ZSGSRD 29595
17-03-17 18:56:52.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:52.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.368 -07 000000431 INF: FPGA: Recv ZSGSRD 29595
17-03-17 18:56:52.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.378 -07 000000502 INF: FPGA: Recv ZSGSRD 29594
17-03-17 18:56:52.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.398 -07 000000486 INF: FPGA: Recv ZSGSRD 29596
17-03-17 18:56:52.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:52.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.408 -07 000000476 INF: FPGA: Recv ZSGSRD 29592
17-03-17 18:56:52.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.428 -07 000000486 INF: FPGA: Recv ZSGSRD 29601
17-03-17 18:56:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:52.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.438 -07 000000476 INF: FPGA: Recv ZSGSRD 29601
17-03-17 18:56:52.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.458 -07 000000012 INF: FPGA: Recv ZSGSRD 29594
17-03-17 18:56:52.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:56:52.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.468 -07 000000462 INF: FPGA: Recv ZSGSRD 29596
17-03-17 18:56:52.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:52.498 -07 000000424 INF: FPGA: Recv ZSGSRD 29594
17-03-17 18:56:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:56:52.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:52.508 -07 000000561 INF: FPGA: Recv ZPIEZORD 25170
17-03-17 18:56:52.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:52.518 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.7 V.
17-03-17 18:56:52.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29596 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29595 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29592 (-129.6 uncal um), Max = 29601 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:56:52.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29596, posNoise = 5, negNoise = 4
17-03-17 18:56:52.518 -07 000000610 INF: Z Motor: After move to -0.130446, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:52.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 325 ms)
17-03-17 18:56:52.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:52.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:52.518 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:52.518 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:52.518 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:52.518 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:52.518 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:52.518 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:52.518 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:56:52.518 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:52.518 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:52.518 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:52.518 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:56:52.518 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:52.528 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:56:52.528 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:52.528 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:56:52.528 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:56:52.538 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:56:52.538 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:56:52.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28673 150\n [Camera]
17-03-17 18:56:52.738 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:53.128 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:53.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:53.128 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:53.138 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:53.138 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:56:53.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:53.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:53.138 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:53.138 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:53.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:56:53.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28673 781
17-03-17 18:56:53.478 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:53.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:56:53.508 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:56:53.508 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:53.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:56:53.518 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:56:53.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:53.518 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:53.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:53.518 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:56:53.528 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:56:53.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:53.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:53.668 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:53.668 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:53.668 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:56:53.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:53.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:53.788 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:53.788 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:53.788 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:56:53.858 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:53.858 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:53.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28673 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-17 18:56:53.858 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131130
17-03-17 18:56:53.858 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13113 mm
17-03-17 18:56:53.858 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:53.858 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:56:53.858 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:56:53.858 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28645, sync = True, waitForSettling = False)
17-03-17 18:56:53.858 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:53.858 -07 000000012 INF: Z Motor: Moving to -0.131128 mm, started at -0.130454 mm, distance = -0.67 um
17-03-17 18:56:53.868 -07 000000012 INF: FPGA: Xmit ZDACW 28645\n [Z Motor]
17-03-17 18:56:53.868 -07 000000382 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:56:53.868 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 18:56:53.868 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:53.868 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:53.868 -07 000000608 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:56:53.868 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:56:53.878 -07 000000012 INF: FPGA: 'ZDACW 28645' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:56:53.878 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:53.878 -07 000000382 INF: FPGA: Recv ZDACR 28645
17-03-17 18:56:53.888 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:53.888 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:53.888 -07 000000012 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:56:54.068 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:56:54.068 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:56:54.068 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:54.078 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:54.078 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:56:54.188 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:56:54.188 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:56:54.188 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:54.198 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:54.198 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:56:54.258 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:56:54.258 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:56:54.298 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:54.298 -07 000000486 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:56:54.308 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:54.308 -07 000000608 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:54.308 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:56:54.308 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-17 18:56:55.258 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:55.258 -07 000000623 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:56:55.268 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:55.268 -07 000000608 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:55.288 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:55.288 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:55.288 -07 000000608 INF: Y Motor: Moved to 69.0278 after 1424 ms (table move)
17-03-17 18:56:55.288 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131128 mm (DAC = 28645)
17-03-17 18:56:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.288 -07 000000433 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:56:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.298 -07 000000623 INF: FPGA: Recv ZSGSRD 29699
17-03-17 18:56:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.308 -07 000000431 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:56:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.318 -07 000000462 INF: FPGA: Recv ZSGSRD 29697
17-03-17 18:56:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.328 -07 000000561 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:56:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.338 -07 000000424 INF: FPGA: Recv ZSGSRD 29704
17-03-17 18:56:55.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.348 -07 000000551 INF: FPGA: Recv ZSGSRD 29704
17-03-17 18:56:55.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.358 -07 000000512 INF: FPGA: Recv ZSGSRD 29699
17-03-17 18:56:55.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.368 -07 000000476 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:56:55.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.378 -07 000000561 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:56:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:55.388 -07 000000433 INF: FPGA: Recv ZPIEZORD 25322
17-03-17 18:56:55.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.398 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.6 V.
17-03-17 18:56:55.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29700 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29699 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29694 (-130.3 uncal um), Max = 29707 (-130.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:56:55.398 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29700, posNoise = 7, negNoise = 6
17-03-17 18:56:55.398 -07 000000610 INF: Z Motor: After move to -0.131128, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:55.398 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 106 ms (allowed 150 ms), total time = 1532 ms
17-03-17 18:56:55.398 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:55.448 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 18:56:55.448 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:55.448 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.131122452621435. ----------
17-03-17 18:56:55.448 -07 000000610 INF: Cycle	19	Tile	12	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:55.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28469, sync = True, waitForSettling = True)
17-03-17 18:56:55.448 -07 000000610 INF: Z Motor: Moving to -0.130323 mm, started at -0.131122 mm, distance = 0.80 um
17-03-17 18:56:55.448 -07 000000610 INF: FPGA: Xmit ZDACW 28469\n [Z Motor]
17-03-17 18:56:55.448 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:56:55.458 -07 000000610 INF: FPGA: 'ZDACW 28469' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:56:55.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:55.458 -07 000000415 INF: FPGA: Recv ZDACR 28469
17-03-17 18:56:55.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:55.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.618 -07 000000433 INF: FPGA: Recv ZSGSRD 29582
17-03-17 18:56:55.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:55.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29574
17-03-17 18:56:55.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.638 -07 000000512 INF: FPGA: Recv ZSGSRD 29579
17-03-17 18:56:55.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.648 -07 000000438 INF: FPGA: Recv ZSGSRD 29576
17-03-17 18:56:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.658 -07 000000415 INF: FPGA: Recv ZSGSRD 29581
17-03-17 18:56:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29584
17-03-17 18:56:55.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.678 -07 000000608 INF: FPGA: Recv ZSGSRD 29573
17-03-17 18:56:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.688 -07 000000561 INF: FPGA: Recv ZSGSRD 29577
17-03-17 18:56:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.698 -07 000000623 INF: FPGA: Recv ZSGSRD 29577
17-03-17 18:56:55.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:55.708 -07 000000415 INF: FPGA: Recv ZSGSRD 29573
17-03-17 18:56:55.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:55.718 -07 000000424 INF: FPGA: Recv ZPIEZORD 25162
17-03-17 18:56:55.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:55.728 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -9.7 V.
17-03-17 18:56:55.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29578 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29577 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29573 (-129.5 uncal um), Max = 29584 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:56:55.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29578, posNoise = 6, negNoise = 5
17-03-17 18:56:55.728 -07 000000610 INF: Z Motor: After move to -0.130323, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:55.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:56:55.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:55.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:55.728 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:55.728 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:55.728 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:55.728 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:55.728 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:55.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:55.728 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:56:55.728 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:55.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:55.728 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:55.738 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:55.738 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:55.738 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:56:55.738 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:55.748 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:56:55.748 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:56:55.748 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:56:55.748 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:56:55.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28645 150\n [Camera]
17-03-17 18:56:55.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:56.268 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.037119,
17-03-17 18:56:56.348 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:56.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:56.348 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:56.348 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:56.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:56:56.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:56.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:56.348 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:56.348 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:56.348 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) start.
17-03-17 18:56:56.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28645 781
17-03-17 18:56:56.638 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:56:56.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:56:56.688 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:56:56.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:56:56.728 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:56:56.728 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:56.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:56:56.728 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:56:56.728 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:56.728 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:56.728 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:56:56.728 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:56.738 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:56:56.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:56:56.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:56:56.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:56.878 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:56.878 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:56:56.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:56:56.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:56:56.888 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:56.888 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:56.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:56:57.068 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:56:57.078 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:56:57.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28645 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:56:57.078 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130728
17-03-17 18:56:57.078 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13073 mm
17-03-17 18:56:57.078 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:56:57.078 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:56:57.078 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:56:57.078 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:57.078 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28557, sync = True, waitForSettling = False)
17-03-17 18:56:57.078 -07 000000012 INF: Z Motor: Moving to -0.130726 mm, started at -0.130339 mm, distance = -0.39 um
17-03-17 18:56:57.078 -07 000000541 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:56:57.088 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:56:57.088 -07 000000012 INF: FPGA: Xmit ZDACW 28557\n [Z Motor]
17-03-17 18:56:57.088 -07 000000569 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:57.088 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:56:57.088 -07 000000569 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:56:57.088 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:56:57.098 -07 000000012 INF: FPGA: 'ZDACW 28557' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:56:57.098 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:57.098 -07 000000502 INF: FPGA: Recv ZDACR 28557
17-03-17 18:56:57.108 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:56:57.108 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:57.108 -07 000000012 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 18:56:57.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:56:57.268 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:56:57.268 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:57.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:56:57.268 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:56:57.268 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:57.268 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:57.268 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:56:57.268 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:56:57.278 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:56:57.488 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:56:57.488 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 18:56:57.518 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:57.518 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:56:57.528 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:56:57.528 -07 000000569 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:57.528 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:56:57.528 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.845 mm, average velocity = 2.107 mm/sec
17-03-17 18:56:58.478 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:56:58.478 -07 000000608 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:56:58.488 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:58.488 -07 000000569 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:56:58.508 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:56:58.508 -07 000000569 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:56:58.508 -07 000000569 INF: Y Motor: Moved to 69.8638 after 1426 ms (table move)
17-03-17 18:56:58.508 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130726 mm (DAC = 28557)
17-03-17 18:56:58.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.508 -07 000000608 INF: FPGA: Recv ZSGSRD 29645
17-03-17 18:56:58.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:56:58.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29632
17-03-17 18:56:58.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.528 -07 000000433 INF: FPGA: Recv ZSGSRD 29641
17-03-17 18:56:58.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.538 -07 000000476 INF: FPGA: Recv ZSGSRD 29633
17-03-17 18:56:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29635
17-03-17 18:56:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.558 -07 000000608 INF: FPGA: Recv ZSGSRD 29643
17-03-17 18:56:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.568 -07 000000502 INF: FPGA: Recv ZSGSRD 29641
17-03-17 18:56:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.578 -07 000000431 INF: FPGA: Recv ZSGSRD 29646
17-03-17 18:56:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.588 -07 000000415 INF: FPGA: Recv ZSGSRD 29634
17-03-17 18:56:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.598 -07 000000438 INF: FPGA: Recv ZSGSRD 29640
17-03-17 18:56:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:58.608 -07 000000433 INF: FPGA: Recv ZPIEZORD 25287
17-03-17 18:56:58.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.618 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.6 V.
17-03-17 18:56:58.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29639 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29632 (-129.9 uncal um), Max = 29646 (-130.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:56:58.618 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29639, posNoise = 7, negNoise = 7
17-03-17 18:56:58.618 -07 000000610 INF: Z Motor: After move to -0.130726, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:58.618 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:56:58.618 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:56:58.668 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 18:56:58.668 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:56:58.668 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.130730575680788. ----------
17-03-17 18:56:58.668 -07 000000610 INF: Cycle	19	Tile	13	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:56:58.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28381, sync = True, waitForSettling = True)
17-03-17 18:56:58.668 -07 000000610 INF: Z Motor: Moving to -0.129920 mm, started at -0.130731 mm, distance = 0.81 um
17-03-17 18:56:58.668 -07 000000610 INF: FPGA: Xmit ZDACW 28381\n [Z Motor]
17-03-17 18:56:58.668 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:56:58.678 -07 000000610 INF: FPGA: 'ZDACW 28381' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:56:58.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:56:58.678 -07 000000433 INF: FPGA: Recv ZDACR 28381
17-03-17 18:56:58.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:56:58.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.838 -07 000000512 INF: FPGA: Recv ZSGSRD 29514
17-03-17 18:56:58.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:56:58.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.848 -07 000000569 INF: FPGA: Recv ZSGSRD 29511
17-03-17 18:56:58.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.858 -07 000000424 INF: FPGA: Recv ZSGSRD 29514
17-03-17 18:56:58.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.868 -07 000000438 INF: FPGA: Recv ZSGSRD 29508
17-03-17 18:56:58.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.878 -07 000000433 INF: FPGA: Recv ZSGSRD 29514
17-03-17 18:56:58.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.888 -07 000000512 INF: FPGA: Recv ZSGSRD 29518
17-03-17 18:56:58.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.898 -07 000000561 INF: FPGA: Recv ZSGSRD 29513
17-03-17 18:56:58.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.908 -07 000000415 INF: FPGA: Recv ZSGSRD 29511
17-03-17 18:56:58.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.918 -07 000000569 INF: FPGA: Recv ZSGSRD 29512
17-03-17 18:56:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:56:58.928 -07 000000433 INF: FPGA: Recv ZSGSRD 29509
17-03-17 18:56:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:56:58.938 -07 000000512 INF: FPGA: Recv ZPIEZORD 25092
17-03-17 18:56:58.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:56:58.948 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.7 V.
17-03-17 18:56:58.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29512 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29512 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29508 (-129.1 uncal um), Max = 29518 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:56:58.948 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29512, posNoise = 6, negNoise = 4
17-03-17 18:56:58.948 -07 000000610 INF: Z Motor: After move to -0.129920, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:56:58.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:56:58.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:56:58.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:56:58.948 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:56:58.948 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:56:58.948 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:56:58.948 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:56:58.948 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:56:58.948 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:56:58.948 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:56:58.948 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:56:58.948 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:56:58.948 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:56:58.958 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:56:58.958 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:56:58.958 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:56:58.958 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:56:58.968 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:56:58.968 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:56:58.968 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:56:58.968 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:56:58.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28557 150\n [Camera]
17-03-17 18:56:59.178 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:56:59.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:56:59.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:56:59.568 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:56:59.568 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:56:59.568 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:56:59.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:56:59.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:56:59.578 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:56:59.688 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:56:59.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:56:59.758 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28557 781
17-03-17 18:56:59.908 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:56:59.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:56:59.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:56:59.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:56:59.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:56:59.958 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:57:00.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:57:00.068 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:57:00.068 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:00.068 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:57:00.078 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 18:57:00.098 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:57:00.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:57:00.108 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:00.108 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:57:00.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:57:00.108 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:00.108 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:00.108 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:57:00.108 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:00.108 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:57:00.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:57:00.298 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:57:00.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28557 150' command took 2 ms to send, 1311 ms to get response, and 1320 ms overall
17-03-17 18:57:00.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:57:00.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129914700738784. ------
17-03-17 18:57:00.298 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:57:00.298 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13629 mm
17-03-17 18:57:00.298 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:57:00.298 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:57:00.308 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:57:00.308 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:57:00.308 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:57:00.308 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:57:00.308 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29773, sync = True, waitForSettling = False)
17-03-17 18:57:00.308 -07 000000012 INF: Z Motor: Moving to -0.136292 mm, started at -0.129915 mm, distance = -6.38 um
17-03-17 18:57:00.318 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:00.318 -07 000000512 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:57:00.328 -07 000000012 INF: FPGA: Xmit ZDACW 29773\n [Z Motor]
17-03-17 18:57:00.328 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:57:00.328 -07 000000502 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:00.328 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:57:00.328 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:57:00.328 -07 000000502 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:57:00.338 -07 000000012 INF: FPGA: 'ZDACW 29773' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:57:00.338 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:00.338 -07 000000382 INF: FPGA: Recv ZDACR 29773
17-03-17 18:57:00.348 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:57:00.348 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:00.348 -07 000000012 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:57:00.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:57:00.488 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:57:00.488 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:00.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:57:00.488 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:57:00.488 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:00.488 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:00.488 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:57:00.488 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:57:00.498 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:57:00.508 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:57:00.508 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 18:57:00.718 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:57:00.718 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:57:00.758 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:00.758 -07 000000462 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:57:00.768 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:57:00.768 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:00.768 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:57:00.768 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 18:57:01.628 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.997626,
17-03-17 18:57:01.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:01.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:01.718 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:01.718 -07 000000561 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:57:01.728 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:01.728 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:01.748 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:57:01.748 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:57:01.748 -07 000000502 INF: Y Motor: Moved to 70.6890 after 1439 ms (table move)
17-03-17 18:57:01.748 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136292 mm (DAC = 29773)
17-03-17 18:57:01.748 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.748 -07 000000608 INF: FPGA: Recv ZSGSRD 30500
17-03-17 18:57:01.758 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:57:01.758 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.758 -07 000000561 INF: FPGA: Recv ZSGSRD 30499
17-03-17 18:57:01.768 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.768 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.768 -07 000000382 INF: FPGA: Recv ZSGSRD 30506
17-03-17 18:57:01.778 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.778 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.778 -07 000000431 INF: FPGA: Recv ZSGSRD 30511
17-03-17 18:57:01.788 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.788 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30512
17-03-17 18:57:01.798 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.798 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.798 -07 000000476 INF: FPGA: Recv ZSGSRD 30507
17-03-17 18:57:01.808 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.808 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.808 -07 000000382 INF: FPGA: Recv ZSGSRD 30509
17-03-17 18:57:01.818 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.818 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.818 -07 000000415 INF: FPGA: Recv ZSGSRD 30500
17-03-17 18:57:01.828 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.828 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.828 -07 000000561 INF: FPGA: Recv ZSGSRD 30505
17-03-17 18:57:01.838 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:01.838 -07 000000623 INF: FPGA: Recv ZSGSRD 30501
17-03-17 18:57:01.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.848 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:01.848 -07 000000424 INF: FPGA: Recv ZPIEZORD 26444
17-03-17 18:57:01.858 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:01.858 -07 000000569 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -8.9 V.
17-03-17 18:57:01.858 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30505 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30506 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30499 (-135.5 uncal um), Max = 30512 (-135.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:57:01.858 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30505, posNoise = 7, negNoise = 6
17-03-17 18:57:01.858 -07 000000569 INF: Z Motor: After move to -0.136292, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:01.858 -07 000000569 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:57:01.858 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:57:01.908 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:57:01.908 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:57:01.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:01.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:01.908 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:01.908 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:57:01.908 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:01.908 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:01.908 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:57:01.908 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:57:01.908 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:57:01.908 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:57:01.928 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:57:01.928 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:57:01.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:57:01.978 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:57:02.178 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:57:02.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:57:02.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:57:02.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600604488, 0x0, 559484976) start.
17-03-17 18:57:02.218 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:57:02.218 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:57:02.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:57:02.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600604488, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:57:02.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:02.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:57:02.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 18:57:02.318 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:57:02.318 -07 000000502 INF: Autofocus start
17-03-17 18:57:02.318 -07 000000502 INF: MeasureProfile start
17-03-17 18:57:02.318 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:57:02.328 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:57:02.328 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:57:02.328 -07 000000502 INF: MeasureProfile done
17-03-17 18:57:02.328 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:57:02.328 -07 000000502 INF: Autofocus finished
17-03-17 18:57:02.528 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:57:02.528 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:57:02.528 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136293943395553. ----------
17-03-17 18:57:02.528 -07 000000610 INF: Cycle	19	Tile	14	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:57:02.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28280, sync = True, waitForSettling = True)
17-03-17 18:57:02.538 -07 000000610 INF: Z Motor: Moving to -0.129458 mm, started at -0.136294 mm, distance = 6.84 um
17-03-17 18:57:02.538 -07 000000610 INF: FPGA: Xmit ZDACW 28280\n [Z Motor]
17-03-17 18:57:02.538 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:57:02.548 -07 000000610 INF: FPGA: 'ZDACW 28280' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:02.548 -07 000000569 INF: FPGA: Recv ZDACR 28280
17-03-17 18:57:02.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:57:02.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.708 -07 000000512 INF: FPGA: Recv ZSGSRD 29442
17-03-17 18:57:02.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:02.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.718 -07 000000382 INF: FPGA: Recv ZSGSRD 29442
17-03-17 18:57:02.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:57:02.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.728 -07 000000462 INF: FPGA: Recv ZSGSRD 29445
17-03-17 18:57:02.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.738 -07 000000608 INF: FPGA: Recv ZSGSRD 29444
17-03-17 18:57:02.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.748 -07 000000415 INF: FPGA: Recv ZSGSRD 29435
17-03-17 18:57:02.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.758 -07 000000551 INF: FPGA: Recv ZSGSRD 29443
17-03-17 18:57:02.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.768 -07 000000512 INF: FPGA: Recv ZSGSRD 29441
17-03-17 18:57:02.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.778 -07 000000541 INF: FPGA: Recv ZSGSRD 29446
17-03-17 18:57:02.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29443
17-03-17 18:57:02.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:02.798 -07 000000415 INF: FPGA: Recv ZSGSRD 29441
17-03-17 18:57:02.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:02.808 -07 000000551 INF: FPGA: Recv ZPIEZORD 25046
17-03-17 18:57:02.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:02.818 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -9.6 V.
17-03-17 18:57:02.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29442 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29442 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29435 (-128.6 uncal um), Max = 29446 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:57:02.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29442, posNoise = 4, negNoise = 7
17-03-17 18:57:02.818 -07 000000610 INF: Z Motor: After move to -0.129458, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:02.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:57:02.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:02.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:02.818 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:02.818 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:02.818 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:57:02.818 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:02.818 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:57:02.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:57:02.818 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:57:02.818 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:57:02.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:57:02.818 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:57:02.818 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:57:02.818 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:57:02.828 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:57:02.828 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:57:02.838 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:57:02.838 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:57:02.838 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:57:02.838 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:57:02.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28457 150\n [Camera]
17-03-17 18:57:03.038 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:57:03.438 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:57:03.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:57:03.438 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:03.438 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:03.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:57:03.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:57:03.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:57:03.438 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:03.438 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:03.438 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) start.
17-03-17 18:57:03.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28457 781
17-03-17 18:57:03.778 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:57:03.818 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:57:03.818 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:57:03.818 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:03.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:57:03.818 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:57:03.818 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:03.818 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:03.818 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:57:03.818 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:03.828 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:57:03.968 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:57:03.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:57:03.968 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:04.088 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:57:04.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:57:04.098 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:04.098 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:04.098 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:57:04.098 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:04.098 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:57:04.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:57:04.168 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:57:04.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28457 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-17 18:57:04.168 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.130129
17-03-17 18:57:04.168 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13013 mm
17-03-17 18:57:04.168 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:57:04.168 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:57:04.168 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:57:04.168 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:04.168 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28427, sync = True, waitForSettling = False)
17-03-17 18:57:04.168 -07 000000424 INF: Z Motor: Moving to -0.130130 mm, started at -0.129465 mm, distance = -0.67 um
17-03-17 18:57:04.168 -07 000000502 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:57:04.178 -07 000000424 INF: FPGA: Xmit ZDACW 28427\n [Z Motor]
17-03-17 18:57:04.178 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:57:04.178 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:04.178 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:57:04.178 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:57:04.178 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:57:04.188 -07 000000424 INF: FPGA: 'ZDACW 28427' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:57:04.188 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:57:04.198 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:04.198 -07 000000512 INF: FPGA: Recv ZDACR 28427
17-03-17 18:57:04.208 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:57:04.208 -07 000000424 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:57:04.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:57:04.468 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:57:04.468 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:04.478 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:04.478 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:57:04.478 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:57:04.478 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:04.478 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:04.478 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 18:57:04.478 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:57:04.558 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:57:04.558 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 18:57:04.598 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:04.598 -07 000000502 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:57:04.608 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:04.608 -07 000000415 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:04.608 -07 000000415 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:57:04.608 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec
17-03-17 18:57:05.558 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:05.558 -07 000000012 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:57:05.568 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:05.568 -07 000000415 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:05.588 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:57:05.588 -07 000000415 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:57:05.588 -07 000000415 INF: Y Motor: Moved to 71.5200 after 1416 ms (table move)
17-03-17 18:57:05.588 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130130 mm (DAC = 28427)
17-03-17 18:57:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.588 -07 000000561 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:57:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:57:05.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:57:05.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.608 -07 000000486 INF: FPGA: Recv ZSGSRD 29542
17-03-17 18:57:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.618 -07 000000569 INF: FPGA: Recv ZSGSRD 29545
17-03-17 18:57:05.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.628 -07 000000415 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:57:05.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.638 -07 000000561 INF: FPGA: Recv ZSGSRD 29545
17-03-17 18:57:05.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.648 -07 000000512 INF: FPGA: Recv ZSGSRD 29554
17-03-17 18:57:05.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.658 -07 000000431 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:57:05.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.668 -07 000000569 INF: FPGA: Recv ZSGSRD 29550
17-03-17 18:57:05.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.678 -07 000000623 INF: FPGA: Recv ZSGSRD 29545
17-03-17 18:57:05.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:05.688 -07 000000382 INF: FPGA: Recv ZPIEZORD 25202
17-03-17 18:57:05.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.698 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.5 V.
17-03-17 18:57:05.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29548 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29546 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29542 (-129.3 uncal um), Max = 29554 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:57:05.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29548, posNoise = 6, negNoise = 6
17-03-17 18:57:05.698 -07 000000610 INF: Z Motor: After move to -0.130130, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:05.698 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 107 ms (allowed 150 ms), total time = 1524 ms
17-03-17 18:57:05.698 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:57:05.748 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:57:05.748 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:57:05.748 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.130145972375888. ----------
17-03-17 18:57:05.748 -07 000000610 INF: Cycle	19	Tile	15	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:57:05.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28250, sync = True, waitForSettling = True)
17-03-17 18:57:05.748 -07 000000610 INF: Z Motor: Moving to -0.129320 mm, started at -0.130146 mm, distance = 0.83 um
17-03-17 18:57:05.748 -07 000000610 INF: FPGA: Xmit ZDACW 28250\n [Z Motor]
17-03-17 18:57:05.748 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:57:05.758 -07 000000610 INF: FPGA: 'ZDACW 28250' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:57:05.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:05.758 -07 000000486 INF: FPGA: Recv ZDACR 28250
17-03-17 18:57:05.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:57:05.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.918 -07 000000541 INF: FPGA: Recv ZSGSRD 29421
17-03-17 18:57:05.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.928 -07 000000424 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:57:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.938 -07 000000476 INF: FPGA: Recv ZSGSRD 29421
17-03-17 18:57:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:57:05.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.958 -07 000000512 INF: FPGA: Recv ZSGSRD 29424
17-03-17 18:57:05.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.968 -07 000000541 INF: FPGA: Recv ZSGSRD 29411
17-03-17 18:57:05.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.978 -07 000000424 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:57:05.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.988 -07 000000623 INF: FPGA: Recv ZSGSRD 29419
17-03-17 18:57:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:05.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:05.998 -07 000000012 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:57:06.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:06.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:06.008 -07 000000512 INF: FPGA: Recv ZSGSRD 29421
17-03-17 18:57:06.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:06.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:06.018 -07 000000541 INF: FPGA: Recv ZPIEZORD 25057
17-03-17 18:57:06.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:06.028 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.6 V.
17-03-17 18:57:06.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29420 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29420 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29411 (-128.5 uncal um), Max = 29424 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:57:06.028 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29420, posNoise = 4, negNoise = 9
17-03-17 18:57:06.028 -07 000000610 INF: Z Motor: After move to -0.129320, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:06.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:57:06.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:06.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:06.028 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:06.028 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:06.028 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:57:06.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:57:06.028 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:57:06.028 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:06.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:57:06.028 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:57:06.028 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:57:06.028 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:57:06.038 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:57:06.038 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:57:06.038 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:57:06.038 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:57:06.048 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:57:06.048 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:57:06.048 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:57:06.048 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:57:06.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28427 150\n [Camera]
17-03-17 18:57:06.248 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:57:06.638 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:06.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:06.648 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:57:06.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:57:06.648 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:57:06.648 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:06.648 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:06.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:57:06.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:57:06.648 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:06.648 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:06.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) start.
17-03-17 18:57:06.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28427 781
17-03-17 18:57:06.988 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.975845,
17-03-17 18:57:06.988 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:57:07.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:57:07.028 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:57:07.028 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:07.038 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:57:07.038 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:57:07.038 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:07.038 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:07.038 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:07.038 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:57:07.038 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:57:07.178 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:57:07.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:57:07.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:07.178 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:07.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:57:07.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:57:07.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:57:07.178 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:07.178 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:07.178 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:57:07.368 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 18:57:07.368 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:57:07.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28427 150' command took 2 ms to send, 1318 ms to get response, and 1323 ms overall
17-03-17 18:57:07.368 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129335
17-03-17 18:57:07.378 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12934 mm
17-03-17 18:57:07.378 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:57:07.488 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28253, sync = True, waitForSettling = False)
17-03-17 18:57:07.488 -07 000000382 INF: Z Motor: Moving to -0.129334 mm, started at -0.129324 mm, distance = -0.01 um
17-03-17 18:57:07.498 -07 000000382 INF: FPGA: Xmit ZDACW 28253\n [Z Motor]
17-03-17 18:57:07.498 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:57:07.498 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:57:07.498 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:57:07.508 -07 000000382 INF: FPGA: 'ZDACW 28253' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:07.508 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:07.508 -07 000000424 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:57:07.518 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:57:07.518 -07 000000012 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:07.518 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:57:07.518 -07 000000012 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:57:07.518 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:07.518 -07 000000462 INF: FPGA: Recv ZDACR 28253
17-03-17 18:57:07.528 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:57:07.528 -07 000000382 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 18:57:07.528 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:57:07.568 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:57:07.568 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:57:07.568 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:07.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:57:07.568 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:57:07.568 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:07.568 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:07.568 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:07.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:57:07.578 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:57:07.898 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:57:07.898 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:57:07.938 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:07.938 -07 000000438 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:57:07.948 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:57:07.948 -07 000000012 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:07.948 -07 000000012 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:57:07.948 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.172 mm/sec
17-03-17 18:57:08.898 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:08.898 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:57:08.908 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:08.908 -07 000000012 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:08.928 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:57:08.928 -07 000000012 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:57:08.928 -07 000000012 INF: Y Motor: Moved to 72.3501 after 1429 ms (table move)
17-03-17 18:57:08.928 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129334 mm (DAC = 28253)
17-03-17 18:57:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.928 -07 000000541 INF: FPGA: Recv ZSGSRD 29415
17-03-17 18:57:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:57:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.938 -07 000000462 INF: FPGA: Recv ZSGSRD 29418
17-03-17 18:57:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.948 -07 000000623 INF: FPGA: Recv ZSGSRD 29422
17-03-17 18:57:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:08.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.958 -07 000000608 INF: FPGA: Recv ZSGSRD 29422
17-03-17 18:57:08.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:08.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.968 -07 000000569 INF: FPGA: Recv ZSGSRD 29423
17-03-17 18:57:08.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:08.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29424
17-03-17 18:57:08.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:08.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29429
17-03-17 18:57:08.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:08.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:08.998 -07 000000486 INF: FPGA: Recv ZSGSRD 29424
17-03-17 18:57:09.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.008 -07 000000431 INF: FPGA: Recv ZSGSRD 29419
17-03-17 18:57:09.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.018 -07 000000569 INF: FPGA: Recv ZSGSRD 29420
17-03-17 18:57:09.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:09.028 -07 000000433 INF: FPGA: Recv ZPIEZORD 25061
17-03-17 18:57:09.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.038 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.6 V.
17-03-17 18:57:09.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29422 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29422 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29415 (-128.5 uncal um), Max = 29429 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:57:09.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29422, posNoise = 7, negNoise = 7
17-03-17 18:57:09.038 -07 000000610 INF: Z Motor: After move to -0.129334, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:09.038 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 18:57:09.038 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:57:09.088 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 18:57:09.088 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:57:09.088 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.129336521646026. ----------
17-03-17 18:57:09.088 -07 000000610 INF: Cycle	19	Tile	16	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:57:09.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28077, sync = True, waitForSettling = True)
17-03-17 18:57:09.088 -07 000000610 INF: Z Motor: Moving to -0.128528 mm, started at -0.129337 mm, distance = 0.81 um
17-03-17 18:57:09.088 -07 000000610 INF: FPGA: Xmit ZDACW 28077\n [Z Motor]
17-03-17 18:57:09.088 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:57:09.098 -07 000000610 INF: FPGA: 'ZDACW 28077' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:57:09.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:09.098 -07 000000433 INF: FPGA: Recv ZDACR 28077
17-03-17 18:57:09.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:57:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.258 -07 000000431 INF: FPGA: Recv ZSGSRD 29295
17-03-17 18:57:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.268 -07 000000462 INF: FPGA: Recv ZSGSRD 29295
17-03-17 18:57:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29299
17-03-17 18:57:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.288 -07 000000433 INF: FPGA: Recv ZSGSRD 29295
17-03-17 18:57:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.298 -07 000000438 INF: FPGA: Recv ZSGSRD 29295
17-03-17 18:57:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.308 -07 000000512 INF: FPGA: Recv ZSGSRD 29299
17-03-17 18:57:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.318 -07 000000382 INF: FPGA: Recv ZSGSRD 29299
17-03-17 18:57:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.328 -07 000000438 INF: FPGA: Recv ZSGSRD 29298
17-03-17 18:57:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29296
17-03-17 18:57:09.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:09.348 -07 000000476 INF: FPGA: Recv ZSGSRD 29298
17-03-17 18:57:09.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:09.358 -07 000000431 INF: FPGA: Recv ZPIEZORD 24898
17-03-17 18:57:09.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:09.368 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.7 V.
17-03-17 18:57:09.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29297 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29297 (-127.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29295 (-127.7 uncal um), Max = 29299 (-127.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:57:09.368 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29297, posNoise = 2, negNoise = 2
17-03-17 18:57:09.368 -07 000000610 INF: Z Motor: After move to -0.128528, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:09.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:57:09.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:09.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:09.368 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:09.368 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:09.368 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:57:09.368 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:57:09.368 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:57:09.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:09.368 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:57:09.368 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:57:09.368 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:57:09.368 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:57:09.368 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:57:09.368 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:57:09.378 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:57:09.378 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:57:09.388 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 18:57:09.388 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:57:09.388 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:57:09.388 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:57:09.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28253 150\n [Camera]
17-03-17 18:57:09.588 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:57:09.988 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:57:09.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:57:09.988 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:09.988 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:57:09.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:57:09.988 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:09.988 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:09.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:57:09.998 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:09.998 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 18:57:10.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28253 781
17-03-17 18:57:10.328 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:57:10.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:57:10.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:57:10.388 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:10.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:57:10.398 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:57:10.398 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:10.398 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:10.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:57:10.398 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:10.408 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:57:10.518 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:57:10.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:57:10.518 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:10.518 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:10.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) start.
17-03-17 18:57:10.528 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:57:10.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:57:10.528 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:10.528 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:10.528 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) start.
17-03-17 18:57:10.718 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 18:57:10.718 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:57:10.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28253 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 18:57:10.718 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129094
17-03-17 18:57:10.718 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12909 mm
17-03-17 18:57:10.718 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:57:10.718 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:57:10.718 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:57:10.718 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:10.718 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28200, sync = True, waitForSettling = False)
17-03-17 18:57:10.718 -07 000000569 INF: Z Motor: Moving to -0.129091 mm, started at -0.128533 mm, distance = -0.56 um
17-03-17 18:57:10.728 -07 000000512 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:57:10.728 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:57:10.728 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:10.728 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:57:10.728 -07 000000502 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:57:10.728 -07 000000569 INF: FPGA: Xmit ZDACW 28200\n [Z Motor]
17-03-17 18:57:10.728 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:57:10.738 -07 000000569 INF: FPGA: 'ZDACW 28200' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:57:10.738 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:57:10.748 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:10.748 -07 000000415 INF: FPGA: Recv ZDACR 28200
17-03-17 18:57:10.758 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:57:10.758 -07 000000569 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:57:10.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1097731232, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:57:10.908 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:57:10.908 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:10.908 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1133153496, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:57:10.908 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:57:10.908 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:10.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:10.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:57:10.908 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:10.918 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:57:11.118 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:57:11.118 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 18:57:11.148 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:11.148 -07 000000486 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:57:11.158 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:57:11.158 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:11.158 -07 000000502 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 18:57:11.158 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.160 mm/sec
17-03-17 18:57:11.638 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:11.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:12.108 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:12.108 -07 000000486 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:57:12.118 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:12.118 -07 000000502 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:12.138 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:57:12.138 -07 000000502 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:57:12.138 -07 000000502 INF: Y Motor: Moved to 73.1768 after 1414 ms (table move)
17-03-17 18:57:12.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129091 mm (DAC = 28200)
17-03-17 18:57:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:57:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:57:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.148 -07 000000462 INF: FPGA: Recv ZSGSRD 29383
17-03-17 18:57:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.158 -07 000000431 INF: FPGA: Recv ZSGSRD 29376
17-03-17 18:57:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.168 -07 000000012 INF: FPGA: Recv ZSGSRD 29380
17-03-17 18:57:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29383
17-03-17 18:57:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.188 -07 000000476 INF: FPGA: Recv ZSGSRD 29394
17-03-17 18:57:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29388
17-03-17 18:57:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.208 -07 000000551 INF: FPGA: Recv ZSGSRD 29383
17-03-17 18:57:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.218 -07 000000569 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:57:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.228 -07 000000502 INF: FPGA: Recv ZSGSRD 29382
17-03-17 18:57:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:12.238 -07 000000476 INF: FPGA: Recv ZPIEZORD 25053
17-03-17 18:57:12.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.248 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.5 V.
17-03-17 18:57:12.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29384 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29383 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29376 (-128.3 uncal um), Max = 29394 (-128.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:57:12.248 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29384, posNoise = 10, negNoise = 8
17-03-17 18:57:12.248 -07 000000610 INF: Z Motor: After move to -0.129091, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:12.248 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 106 ms (allowed 150 ms), total time = 1522 ms
17-03-17 18:57:12.248 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:57:12.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 18:57:12.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:57:12.298 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.129092401584639. ----------
17-03-17 18:57:12.298 -07 000000610 INF: Cycle	19	Tile	17	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:57:12.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28024, sync = True, waitForSettling = True)
17-03-17 18:57:12.298 -07 000000610 INF: Z Motor: Moving to -0.128286 mm, started at -0.129092 mm, distance = 0.81 um
17-03-17 18:57:12.298 -07 000000610 INF: FPGA: Xmit ZDACW 28024\n [Z Motor]
17-03-17 18:57:12.298 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:57:12.308 -07 000000610 INF: FPGA: 'ZDACW 28024' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:57:12.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:12.308 -07 000000438 INF: FPGA: Recv ZDACR 28024
17-03-17 18:57:12.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:57:12.348 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 3.971733,
17-03-17 18:57:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:57:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:12.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.478 -07 000000512 INF: FPGA: Recv ZSGSRD 29262
17-03-17 18:57:12.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.488 -07 000000424 INF: FPGA: Recv ZSGSRD 29257
17-03-17 18:57:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.498 -07 000000623 INF: FPGA: Recv ZSGSRD 29265
17-03-17 18:57:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.508 -07 000000569 INF: FPGA: Recv ZSGSRD 29263
17-03-17 18:57:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29258
17-03-17 18:57:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29264
17-03-17 18:57:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.538 -07 000000424 INF: FPGA: Recv ZSGSRD 29249
17-03-17 18:57:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.548 -07 000000438 INF: FPGA: Recv ZSGSRD 29257
17-03-17 18:57:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:12.558 -07 000000569 INF: FPGA: Recv ZSGSRD 29256
17-03-17 18:57:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:12.568 -07 000000486 INF: FPGA: Recv ZPIEZORD 24862
17-03-17 18:57:12.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:12.578 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.7 V.
17-03-17 18:57:12.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29258 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29258 (-127.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29249 (-127.5 uncal um), Max = 29265 (-127.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:57:12.578 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29258, posNoise = 7, negNoise = 9
17-03-17 18:57:12.578 -07 000000610 INF: Z Motor: After move to -0.128286, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:12.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 18:57:12.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:12.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:12.578 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:12.578 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:12.578 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:57:12.578 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:57:12.578 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:12.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:57:12.578 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:57:12.578 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:57:12.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:57:12.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:57:12.588 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:57:12.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:57:12.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:57:12.588 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:57:12.598 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:57:12.598 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:57:12.598 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:57:12.598 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:57:12.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28200 150\n [Camera]
17-03-17 18:57:12.808 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:57:13.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:57:13.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:57:13.198 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:13.198 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:13.198 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:57:13.198 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:57:13.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:57:13.208 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:13.208 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:13.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:57:13.388 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28200 781
17-03-17 18:57:13.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:57:13.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:57:13.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:57:13.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:13.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:57:13.578 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:57:13.578 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:13.578 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:13.588 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:57:13.588 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:57:13.588 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:57:13.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:57:13.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:57:13.738 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:13.738 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:13.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:57:13.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:57:13.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:57:13.738 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:13.738 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:13.738 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:57:13.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:57:13.928 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:57:13.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28200 150' command took 2 ms to send, 1311 ms to get response, and 1321 ms overall
17-03-17 18:57:13.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:57:13.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128282950854777. ------
17-03-17 18:57:13.938 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:57:13.938 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13472 mm
17-03-17 18:57:13.938 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:57:13.938 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:57:13.948 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:13.948 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:57:13.948 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:57:13.948 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:57:13.948 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29430, sync = True, waitForSettling = False)
17-03-17 18:57:13.948 -07 000000012 INF: Z Motor: Moving to -0.134722 mm, started at -0.128283 mm, distance = -6.44 um
17-03-17 18:57:13.958 -07 000000012 INF: FPGA: Xmit ZDACW 29430\n [Z Motor]
17-03-17 18:57:13.958 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:57:13.968 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:13.968 -07 000000012 INF: FPGA: 'ZDACW 29430' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:57:13.968 -07 000000502 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:57:13.978 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:57:13.978 -07 000000382 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:13.978 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:57:13.978 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:13.978 -07 000000382 INF: Y Motor: Moving 1353 steps-33
17-03-17 18:57:13.978 -07 000000486 INF: FPGA: Recv ZDACR 29430
17-03-17 18:57:13.988 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:57:13.988 -07 000000012 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:57:13.988 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:57:14.118 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:57:14.118 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:57:14.118 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:14.118 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:57:14.118 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:57:14.118 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:14.128 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:14.128 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:14.128 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:57:14.128 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:57:14.148 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:57:14.148 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:57:14.358 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:57:14.358 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 387 ms overall
17-03-17 18:57:14.388 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:14.388 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:57:14.398 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:57:14.398 -07 000000382 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:14.398 -07 000000382 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:57:14.398 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.186 mm/sec
17-03-17 18:57:15.348 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:15.348 -07 000000502 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:57:15.358 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:15.358 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:15.368 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:57:15.368 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:57:15.368 -07 000000382 INF: Y Motor: Moved to 74.0088 after 1425 ms (table move)
17-03-17 18:57:15.368 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134722 mm (DAC = 29430)
17-03-17 18:57:15.368 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.378 -07 000000551 INF: FPGA: Recv ZSGSRD 30265
17-03-17 18:57:15.378 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:57:15.378 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.378 -07 000000561 INF: FPGA: Recv ZSGSRD 30266
17-03-17 18:57:15.388 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:57:15.388 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.388 -07 000000569 INF: FPGA: Recv ZSGSRD 30266
17-03-17 18:57:15.398 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.398 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.398 -07 000000438 INF: FPGA: Recv ZSGSRD 30260
17-03-17 18:57:15.408 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.408 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.408 -07 000000502 INF: FPGA: Recv ZSGSRD 30258
17-03-17 18:57:15.418 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.418 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.418 -07 000000569 INF: FPGA: Recv ZSGSRD 30265
17-03-17 18:57:15.428 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.428 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30267
17-03-17 18:57:15.438 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.438 -07 000000382 INF: FPGA: Recv ZSGSRD 30261
17-03-17 18:57:15.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.448 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.448 -07 000000424 INF: FPGA: Recv ZSGSRD 30256
17-03-17 18:57:15.458 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:15.458 -07 000000569 INF: FPGA: Recv ZSGSRD 30261
17-03-17 18:57:15.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.468 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:15.468 -07 000000431 INF: FPGA: Recv ZPIEZORD 26172
17-03-17 18:57:15.478 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:15.478 -07 000000476 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.0 V.
17-03-17 18:57:15.478 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30262 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30263 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30256 (-133.9 uncal um), Max = 30267 (-134.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:57:15.478 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30262, posNoise = 5, negNoise = 6
17-03-17 18:57:15.478 -07 000000476 INF: Z Motor: After move to -0.134722, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:15.478 -07 000000476 INF: Z Motor: Settle wait time = 1427 ms, measure time = 102 ms (allowed 150 ms), total time = 1529 ms
17-03-17 18:57:15.478 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:57:15.528 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 18:57:15.528 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:57:15.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:15.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:15.528 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:15.528 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:15.528 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:57:15.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:15.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:57:15.528 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:57:15.538 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:57:15.538 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:57:15.548 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:57:15.548 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:57:15.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:57:15.598 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:57:15.798 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:57:15.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:57:15.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:57:15.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:57:15.838 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:57:15.838 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:57:15.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:57:15.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:57:15.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:15.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:57:15.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:57:15.938 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:57:15.938 -07 000000415 INF: Autofocus start
17-03-17 18:57:15.938 -07 000000415 INF: MeasureProfile start
17-03-17 18:57:15.938 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:57:15.948 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:57:15.948 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:57:15.948 -07 000000415 INF: MeasureProfile done
17-03-17 18:57:15.948 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:57:15.948 -07 000000415 INF: Autofocus finished
17-03-17 18:57:16.148 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:57:16.148 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:57:16.148 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134732859845105. ----------
17-03-17 18:57:16.148 -07 000000610 INF: Cycle	19	Tile	18	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:57:16.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27925, sync = True, waitForSettling = True)
17-03-17 18:57:16.158 -07 000000610 INF: Z Motor: Moving to -0.127832 mm, started at -0.134733 mm, distance = 6.90 um
17-03-17 18:57:16.158 -07 000000610 INF: FPGA: Xmit ZDACW 27925\n [Z Motor]
17-03-17 18:57:16.158 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:57:16.168 -07 000000610 INF: FPGA: 'ZDACW 27925' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:16.168 -07 000000462 INF: FPGA: Recv ZDACR 27925
17-03-17 18:57:16.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:57:16.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.328 -07 000000551 INF: FPGA: Recv ZSGSRD 29191
17-03-17 18:57:16.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:16.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.338 -07 000000476 INF: FPGA: Recv ZSGSRD 29187
17-03-17 18:57:16.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.348 -07 000000608 INF: FPGA: Recv ZSGSRD 29194
17-03-17 18:57:16.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.358 -07 000000486 INF: FPGA: Recv ZSGSRD 29188
17-03-17 18:57:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.368 -07 000000512 INF: FPGA: Recv ZSGSRD 29187
17-03-17 18:57:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.378 -07 000000569 INF: FPGA: Recv ZSGSRD 29186
17-03-17 18:57:16.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29187
17-03-17 18:57:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.398 -07 000000541 INF: FPGA: Recv ZSGSRD 29189
17-03-17 18:57:16.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29189
17-03-17 18:57:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:16.418 -07 000000012 INF: FPGA: Recv ZSGSRD 29189
17-03-17 18:57:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:16.428 -07 000000561 INF: FPGA: Recv ZPIEZORD 24785
17-03-17 18:57:16.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:16.438 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.261 V. Piezo Error = -9.7 V.
17-03-17 18:57:16.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29189 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29188 (-127.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29186 (-127.0 uncal um), Max = 29194 (-127.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:57:16.438 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29189, posNoise = 5, negNoise = 3
17-03-17 18:57:16.438 -07 000000610 INF: Z Motor: After move to -0.127832, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:16.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:57:16.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:16.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:16.438 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:16.438 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:16.438 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:57:16.438 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:16.438 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:57:16.438 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:57:16.438 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:57:16.438 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:57:16.438 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:57:16.438 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:57:16.448 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:57:16.448 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:57:16.448 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:57:16.448 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:57:16.448 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:57:16.448 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:57:16.458 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:57:16.458 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:57:16.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28102 150\n [Camera]
17-03-17 18:57:16.638 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:16.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 18. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:16.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:57:17.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:57:17.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:57:17.058 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:17.058 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:17.058 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:57:17.058 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:57:17.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:57:17.058 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:17.058 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:17.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:57:17.248 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28102 781
17-03-17 18:57:17.398 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:57:17.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:57:17.438 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:57:17.438 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:17.438 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:57:17.438 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:57:17.438 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:17.438 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:17.438 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:57:17.438 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:17.448 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:57:17.588 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:57:17.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:57:17.588 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:17.588 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:17.588 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:57:17.588 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:57:17.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:57:17.588 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:17.588 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:17.588 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:57:17.708 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.003063,
17-03-17 18:57:17.838 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-17 18:57:17.838 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:57:17.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28102 150' command took 2 ms to send, 1374 ms to get response, and 1380 ms overall
17-03-17 18:57:17.838 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.128139
17-03-17 18:57:17.838 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12814 mm
17-03-17 18:57:17.838 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:57:17.838 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:57:17.838 -07 000000431 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:57:17.848 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:17.848 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 27992, sync = True, waitForSettling = False)
17-03-17 18:57:17.848 -07 000000541 INF: Z Motor: Moving to -0.128139 mm, started at -0.127840 mm, distance = -0.30 um
17-03-17 18:57:17.848 -07 000000561 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:57:17.858 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:17.858 -07 000000431 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:17.858 -07 000000431 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:57:17.858 -07 000000431 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:57:17.868 -07 000000541 INF: FPGA: Xmit ZDACW 27992\n [Z Motor]
17-03-17 18:57:17.868 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:57:17.878 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:57:17.878 -07 000000541 INF: FPGA: 'ZDACW 27992' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:57:17.898 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:17.898 -07 000000512 INF: FPGA: Recv ZDACR 27992
17-03-17 18:57:17.908 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:57:17.908 -07 000000541 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 18:57:17.978 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:57:17.978 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:57:17.978 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:17.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:57:17.978 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:57:17.978 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:17.978 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:17.988 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:57:17.988 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:57:17.988 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:57:18.248 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 18:57:18.248 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:57:18.268 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:18.278 -07 000000433 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:57:18.278 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:57:18.278 -07 000000431 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:18.278 -07 000000431 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:57:18.278 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:57:19.228 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:19.228 -07 000000438 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:57:19.238 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:19.238 -07 000000431 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:19.248 -07 000000431 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:57:19.248 -07 000000431 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:57:19.248 -07 000000431 INF: Y Motor: Moved to 74.8325 after 1405 ms (table move)
17-03-17 18:57:19.248 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128139 mm (DAC = 27992)
17-03-17 18:57:19.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29235
17-03-17 18:57:19.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:57:19.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.298 -07 000000512 INF: FPGA: Recv ZSGSRD 29232
17-03-17 18:57:19.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:57:19.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.308 -07 000000551 INF: FPGA: Recv ZSGSRD 29236
17-03-17 18:57:19.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.328 -07 000000462 INF: FPGA: Recv ZSGSRD 29247
17-03-17 18:57:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:57:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29239
17-03-17 18:57:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.348 -07 000000382 INF: FPGA: Recv ZSGSRD 29242
17-03-17 18:57:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.358 -07 000000541 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:57:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.368 -07 000000623 INF: FPGA: Recv ZSGSRD 29232
17-03-17 18:57:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.378 -07 000000438 INF: FPGA: Recv ZSGSRD 29237
17-03-17 18:57:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.388 -07 000000433 INF: FPGA: Recv ZSGSRD 29235
17-03-17 18:57:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:19.398 -07 000000382 INF: FPGA: Recv ZPIEZORD 24841
17-03-17 18:57:19.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.6 V.
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29237 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29236 (-127.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29231 (-127.3 uncal um), Max = 29247 (-127.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29237, posNoise = 10, negNoise = 6
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: After move to -0.128139, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: Settle wait time = 1407 ms, measure time = 153 ms (allowed 150 ms), total time = 1560 ms
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 18:57:19.408 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1563 ms
17-03-17 18:57:19.408 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:57:19.408 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.1281480423998. ----------
17-03-17 18:57:19.408 -07 000000610 INF: Cycle	19	Tile	19	Exposure Settings		A	396	G	190	T	190	C	396
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27815, sync = True, waitForSettling = True)
17-03-17 18:57:19.408 -07 000000610 INF: Z Motor: Moving to -0.127329 mm, started at -0.128148 mm, distance = 0.82 um
17-03-17 18:57:19.408 -07 000000610 INF: FPGA: Xmit ZDACW 27815\n [Z Motor]
17-03-17 18:57:19.408 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:57:19.418 -07 000000610 INF: FPGA: 'ZDACW 27815' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:57:19.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:57:19.418 -07 000000382 INF: FPGA: Recv ZDACR 27815
17-03-17 18:57:19.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:57:19.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.578 -07 000000551 INF: FPGA: Recv ZSGSRD 29113
17-03-17 18:57:19.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:19.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.588 -07 000000424 INF: FPGA: Recv ZSGSRD 29110
17-03-17 18:57:19.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.598 -07 000000424 INF: FPGA: Recv ZSGSRD 29113
17-03-17 18:57:19.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.608 -07 000000431 INF: FPGA: Recv ZSGSRD 29111
17-03-17 18:57:19.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.618 -07 000000476 INF: FPGA: Recv ZSGSRD 29111
17-03-17 18:57:19.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29114
17-03-17 18:57:19.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.638 -07 000000433 INF: FPGA: Recv ZSGSRD 29109
17-03-17 18:57:19.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.648 -07 000000424 INF: FPGA: Recv ZSGSRD 29111
17-03-17 18:57:19.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.658 -07 000000512 INF: FPGA: Recv ZSGSRD 29112
17-03-17 18:57:19.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:57:19.668 -07 000000433 INF: FPGA: Recv ZSGSRD 29108
17-03-17 18:57:19.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:57:19.678 -07 000000502 INF: FPGA: Recv ZPIEZORD 24732
17-03-17 18:57:19.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:19.688 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.6 V.
17-03-17 18:57:19.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29111 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29111 (-126.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29108 (-126.5 uncal um), Max = 29114 (-126.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:57:19.688 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29111, posNoise = 3, negNoise = 3
17-03-17 18:57:19.688 -07 000000610 INF: Z Motor: After move to -0.127329, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:57:19.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:57:19.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:57:19.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:57:19.688 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:57:19.688 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:57:19.688 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:57:19.688 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:57:19.688 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:57:19.688 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:57:19.688 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:57:19.688 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:57:19.688 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:57:19.688 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:57:19.688 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:57:19.688 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:57:19.698 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:57:19.698 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:57:19.698 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:57:19.698 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:57:19.708 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:57:19.708 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:57:19.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 27992 150\n [Camera]
17-03-17 18:57:19.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:57:20.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-17 18:57:20.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-17 18:57:20.308 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:20.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-17 18:57:20.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-17 18:57:20.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:20.308 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:20.308 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:57:20.318 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:20.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) start.
17-03-17 18:57:20.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27992 781
17-03-17 18:57:20.648 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:57:20.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:57:20.688 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:57:20.688 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:20.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1097731232, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:57:20.688 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:57:20.688 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:20.698 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:20.698 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:57:20.698 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:57:20.708 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:57:20.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-17 18:57:20.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-17 18:57:20.838 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:57:20.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-17 18:57:20.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-17 18:57:20.838 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:57:20.848 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:57:20.848 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) start.
17-03-17 18:57:20.848 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:57:20.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:57:21.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-17 18:57:21.028 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:57:21.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 27992 150' command took 2 ms to send, 1314 ms to get response, and 1321 ms overall
17-03-17 18:57:21.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1133153496, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:57:21.218 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:57:21.228 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:57:21.228 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:21.228 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:57:21.228 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:57:21.228 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:21.228 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:57:21.228 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:57:21.228 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:57:21.238 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:57:21.268 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:57:21.268 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:57:21.318 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:57:21.328 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 18:57:21.328 -07 000000610 INF: Imaging Cycle 19: ScanTilesCommand Cycle 19 time end. Duration was 139247 ms.
17-03-17 18:57:21.328 -07 000000610 INF: =================== Cycle #19 ===================
17-03-17 18:57:21.328 -07 000000610 INF: ===================  ===================
17-03-17 18:57:21.328 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:57:21.338 -07 000000476 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 18:57:21.338 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:57:21.338 -07 000000608 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 18:57:21.338 -07 000000608 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 19, FrontChillerTemperature: 4.003063, FrontChillerHeatSinkTemperature: 0.464988, AmbientTemperature: 18.85441, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.84667, GreenLEDSensorTemperature: 25.00534, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 18:57:21.348 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.