17-03-17 15:58:43.546 -07 000000610 INF: Y Motor: Loading Y Motion Profile for 0.830 mm
17-03-17 15:58:43.546 -07 000000610 INF: Y Motor: The Y Motion Profile for 0.830 mm is already loaded, skipping
17-03-17 15:58:43.546 -07 000000610 INF: SipperMotor: Set Sipper Position Down
17-03-17 15:58:43.546 -07 000000610 INF: FPGA: Xmit SIPDOWN\n [SipperMotor]
17-03-17 15:58:51.786 -07 000000565 INF: FPGA: Recv SIPDOWN
17-03-17 15:58:51.786 -07 000000610 INF: FPGA: 'SIPDOWN' command took 0 ms to send, 8234 ms to get response, and 8241 ms overall
17-03-17 15:58:51.786 -07 000000565 INF: FlowRate: BUBEN2 reporting interval: 5000 ms
17-03-17 15:58:51.786 -07 000000565 INF: FPGA: Xmit BUBEN2 5000\n [FlowSensor]
17-03-17 15:58:51.796 -07 000000436 INF: FPGA: Recv @BUBEN2 683258
17-03-17 15:58:51.826 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 15:58:51.826 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 0.0000 mm, delta = 75.3806 mm
17-03-17 15:58:51.826 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 15:58:51.826 -07 000000558 INF: FPGA: Recv YRDPOS -1
17-03-17 15:58:51.836 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 15:58:51.836 -07 000000610 INF: Y Motor: Encoder = -1 = motor step -0.8 = -0.0005 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 15:58:51.836 -07 000000610 INF: Y Motor: Last commanded position = 0.0000 mm (0.0 steps), delta from last commanded position = 75.3806 mm (120608.9 steps). UsingTableMove = False
17-03-17 15:58:51.836 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 15:58:51.836 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 15:58:56.246 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.892268,
17-03-17 15:58:56.796 -07 000000436 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:58:56.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:00.696 -07 000000567 INF: FPGA: Recv YMVTO 154378 120636
17-03-17 15:59:00.696 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 8850 ms to get response, and 8857 ms overall
17-03-17 15:59:00.696 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 15:59:00.696 -07 000000610 INF: Y Motor: To move from 0.000 to 75.381 (75.381 mm) should take 120609 steps, but required 120636 steps (75.398 mm). Slippage = 0.017 mm (0.00%).
17-03-17 15:59:00.696 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 8858 ms, distance = 75.381 mm, average velocity = 8.510 mm/sec
17-03-17 15:59:01.606 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.904221,
17-03-17 15:59:01.796 -07 000000558 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:01.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:03.696 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 15:59:03.696 -07 000000421 INF: FPGA: Recv YRDPOS 154385
17-03-17 15:59:03.706 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 15:59:03.706 -07 000000610 INF: Y Motor: Encoder = 154385 = motor step 120613.3 = 75.3833 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 15:59:03.706 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.002721, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 15:59:03.706 -07 000000610 INF: Y Motor: Position error after settling = 6 encoder counts (0.003 mm), Delta during settling = 7 counts (0.003 mm)
17-03-17 15:59:03.706 -07 000000610 INF: Y Motor: Moved to 75.3833 after 11885 ms
17-03-17 15:59:03.746 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 15:59:03.746 -07 000000610 INF: ReagentValve: Go to position 15 - PumpToFlowcell start
17-03-17 15:59:03.746 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 15:59:03.776 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 15:59:03.776 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 15. Moving 12 positions.
17-03-17 15:59:03.776 -07 000000610 INF: ReagentValve: Xmit +0F\r
17-03-17 15:59:04.756 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 15:59:04.776 -07 000000610 INF: ReagentValve: Recv 0990\r
17-03-17 15:59:04.776 -07 000000610 INF: ReagentValve: Move+ from 3 to 15 took 2448 steps, expected 2450. Error = -2 steps (-0.1%)
17-03-17 15:59:04.826 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 15:59:04.846 -07 000000610 INF: ReagentValve: Recv 0F\r
17-03-17 15:59:04.846 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 15:59:04.946 -07 000000610 INF: =================== Pumping Reagent PW1 (15) ===================
17-03-17 15:59:04.946 -07 000000610 INF: LanePump: Pumping from 15, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 15:59:09.526 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:09.526 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:09.526 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:09.536 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.8936,
17-03-17 15:59:09.566 -07 000000610 INF: LanePump: Recv /0`3000(0x03)\r\n
17-03-17 15:59:09.566 -07 000000610 INF: LanePump: Current Position of Pump is: 3000
17-03-17 15:59:09.696 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:09.736 -07 000000610 INF: LanePump: Recv /0`3000(0x03)\r\n
17-03-17 15:59:09.736 -07 000000610 INF: LanePump: Current Position of Pump is: 3000
17-03-17 15:59:11.796 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:11.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:13.906 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:13.936 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:13.936 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 15:59:14.066 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 15:59:14.096 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:14.526 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:14.556 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:14.556 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 15:59:14.686 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:14.716 -07 000000610 INF: LanePump: Recv /0`3000(0x03)\r\n
17-03-17 15:59:14.716 -07 000000610 INF: LanePump: Current Position of Pump is: 3000
17-03-17 15:59:14.846 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 15:59:14.876 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:14.906 -07 000000558 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.880317,
17-03-17 15:59:16.796 -07 000000558 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:16.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:20.276 -07 000000586 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.896264,
17-03-17 15:59:21.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:21.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:25.296 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:25.326 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:25.646 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.87499,
17-03-17 15:59:25.746 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:25.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:26.196 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:26.226 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:26.646 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:26.676 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:26.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:26.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:27.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:27.126 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:27.126 -07 000000610 INF: LanePump: Waited 12249 ms for pump motion to complete
17-03-17 15:59:27.126 -07 000000610 INF: =================== Pumping Reagent PW1 (15), Aspirating port InputPort ===================
17-03-17 15:59:27.256 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 15:59:27.296 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:31.016 -07 000000558 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.880317,
17-03-17 15:59:31.796 -07 000000436 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:31.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:34.716 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:34.746 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:35.166 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:35.196 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:35.616 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:35.646 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:36.066 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:36.096 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:36.386 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.860377,
17-03-17 15:59:36.516 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:36.546 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:36.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:37.366 -07 000000436 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:37.366 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:37.376 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:37.376 -07 000000610 INF: LanePump: Waited 10079 ms for pump motion to complete
17-03-17 15:59:37.376 -07 000000610 INF: =================== Pumping Reagent PW1 (15) ===================
17-03-17 15:59:37.506 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:37.536 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 15:59:37.536 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 15:59:37.666 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:37.696 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 15:59:37.696 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 15:59:37.696 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 15:59:37.826 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 15:59:37.856 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:38.286 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:38.316 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:38.316 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 15:59:38.316 -07 000000610 INF: ===================  ===================
17-03-17 15:59:39.536 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 15:59:39.536 -07 000000610 INF: ReagentValve: Go to position 16 - PumpToFlowcell start
17-03-17 15:59:39.536 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 15:59:39.556 -07 000000610 INF: ReagentValve: Recv 0F\r
17-03-17 15:59:39.556 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 15 to 16. Moving 1 positions.
17-03-17 15:59:39.556 -07 000000610 INF: ReagentValve: Xmit +10\r
17-03-17 15:59:39.686 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 15:59:39.706 -07 000000610 INF: ReagentValve: Recv 00CC\r
17-03-17 15:59:39.706 -07 000000610 INF: ReagentValve: Move+ from 15 to 16 took 204 steps, expected 204. Error = 0 steps (0.0%)
17-03-17 15:59:39.756 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 15:59:39.776 -07 000000610 INF: ReagentValve: Recv 10\r
17-03-17 15:59:39.776 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 15:59:39.876 -07 000000610 INF: =================== Pumping Reagent PW2 (16) ===================
17-03-17 15:59:39.876 -07 000000610 INF: LanePump: Pumping from 16, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 15:59:39.876 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:39.906 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 15:59:39.906 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 15:59:40.036 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:40.066 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 15:59:40.066 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 15:59:41.756 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.857713,
17-03-17 15:59:41.796 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:41.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:44.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:44.266 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:44.266 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 15:59:44.396 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 15:59:44.426 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:44.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:44.886 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:44.886 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 15:59:45.016 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 15:59:45.046 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 15:59:45.046 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 15:59:45.176 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 15:59:45.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:46.806 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:46.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:47.116 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.866999,
17-03-17 15:59:51.026 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:51.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:51.476 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:51.506 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:51.796 -07 000000586 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:51.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:51.926 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:51.956 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:52.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:52.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:52.476 -07 000000436 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.873658,
17-03-17 15:59:52.826 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 15:59:52.856 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 15:59:52.856 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 15:59:52.856 -07 000000610 INF: =================== Pumping Reagent PW2 (16), Aspirating port InputPort ===================
17-03-17 15:59:52.986 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 15:59:53.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 15:59:56.796 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 15:59:56.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 15:59:57.836 -07 000000586 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.876321,
17-03-17 16:00:00.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:00.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:00.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:00.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:01.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:01.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:01.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:01.796 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:01.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:01.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:02.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:02.276 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:02.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:02.726 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:02.726 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 16:00:02.726 -07 000000610 INF: =================== Pumping Reagent PW2 (16) ===================
17-03-17 16:00:02.856 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:02.886 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:00:02.886 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:00:03.016 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:03.046 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:00:03.046 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:00:03.046 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:00:03.176 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:00:03.196 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.900224,
17-03-17 16:00:03.206 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:03.636 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:03.666 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:03.666 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:00:03.666 -07 000000610 INF: ===================  ===================
17-03-17 16:00:04.886 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 16:00:04.886 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 16:00:04.886 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:00:04.906 -07 000000610 INF: ReagentValve: Recv 10\r
17-03-17 16:00:04.906 -07 000000610 INF: ReagentValve: Taking longest path '-' from 16 to 3 to avoid 18. Moving 13 positions.
17-03-17 16:00:04.906 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 16:00:05.976 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:00:05.996 -07 000000610 INF: ReagentValve: Recv 0A70\r
17-03-17 16:00:05.996 -07 000000610 INF: ReagentValve: Move- from 16 to 3 took 2672 steps, expected 2654. Error = 18 steps (0.7%)
17-03-17 16:00:06.046 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:00:06.066 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:00:06.066 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:00:06.166 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:00:06.166 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 750 µL, calling command Pumping to Flow Cell #1
17-03-17 16:00:06.166 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:06.196 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:00:06.196 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:00:06.326 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:06.356 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:00:06.356 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:00:06.796 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:06.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:08.556 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.957298,
17-03-17 16:00:10.526 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:10.556 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:10.556 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:00:10.686 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:00:10.716 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:11.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:11.176 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:11.176 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:00:11.306 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:11.336 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:00:11.336 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:00:11.466 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:00:11.506 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:11.796 -07 000000586 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:11.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:13.916 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.985141,
17-03-17 16:00:16.796 -07 000000586 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:16.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:17.326 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:17.356 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:17.776 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:17.806 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:18.226 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:18.256 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:18.676 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:18.706 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:19.126 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:19.156 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:19.156 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 16:00:19.156 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:00:19.276 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.963925,
17-03-17 16:00:19.286 -07 000000610 INF: LanePump: Xmit /1V400IA3000R\r
17-03-17 16:00:19.326 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:21.796 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:21.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:24.636 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.962592,
17-03-17 16:00:26.796 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:26.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:29.996 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.986474,
17-03-17 16:00:31.796 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:31.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:32.746 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:32.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:33.196 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:33.226 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:33.646 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:33.676 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:34.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:34.126 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:34.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:34.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:34.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:35.406 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:35.406 -07 000000610 INF: LanePump: Waited 16079 ms for pump motion to complete
17-03-17 16:00:35.406 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:00:35.536 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:35.566 -07 000000610 INF: LanePump: Recv /0`3000(0x03)\r\n
17-03-17 16:00:35.566 -07 000000610 INF: LanePump: Current Position of Pump is: 3000
17-03-17 16:00:35.696 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:35.706 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 5.002361,
17-03-17 16:00:35.726 -07 000000610 INF: LanePump: Recv /0`3000(0x03)\r\n
17-03-17 16:00:35.726 -07 000000610 INF: LanePump: Current Position of Pump is: 3000
17-03-17 16:00:35.726 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Dispensing port OutputPort ===================
17-03-17 16:00:36.796 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:36.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:37.566 -07 000000610 INF: AsyncDelayTimer waited 1840ms
17-03-17 16:00:37.566 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:37.596 -07 000000610 INF: LanePump: Recv /0`3000(0x03)\r\n
17-03-17 16:00:37.596 -07 000000610 INF: LanePump: Current Position of Pump is: 3000
17-03-17 16:00:37.726 -07 000000610 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 16:00:37.766 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:41.066 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.993102,
17-03-17 16:00:41.186 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:41.216 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:41.636 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:41.666 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:41.796 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:41.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:42.086 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:42.116 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:42.116 -07 000000610 INF: LanePump: Waited 4349 ms for pump motion to complete
17-03-17 16:00:42.116 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:00:42.116 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:00:42.246 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 16:00:42.286 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:00:46.426 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.991769,
17-03-17 16:00:46.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:46.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:51.786 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.991769,
17-03-17 16:00:51.796 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:51.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:55.706 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:56.206 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:56.206 -07 000000610 INF: LanePump: Waited 13919 ms for pump motion to complete
17-03-17 16:00:56.206 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:00:56.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:56.366 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:00:56.366 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:00:56.496 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:56.526 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:00:56.526 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:00:56.526 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:00:56.656 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:00:56.686 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:56.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:00:56.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:00:57.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:00:57.146 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:00:57.146 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:00:57.146 -07 000000610 INF: ===================  ===================
17-03-17 16:00:57.146 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 5.007657,
17-03-17 16:00:57.146 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:00:57.146 -07 000000610 INF: =================== Dispense to DispenseToWaste, Dispensing port OutputPort ===================
17-03-17 16:00:58.366 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 16:00:58.366 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:00:58.396 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:00:58.396 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:00:58.526 -07 000000610 INF: LanePump: Xmit /1V500OA0R\r
17-03-17 16:00:58.566 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:01.796 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:01.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:02.506 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.981178,
17-03-17 16:01:03.486 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:03.516 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:03.936 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:03.966 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:04.386 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:04.416 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:04.836 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:04.866 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:04.866 -07 000000610 INF: LanePump: Waited 6299 ms for pump motion to complete
17-03-17 16:01:04.866 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:04.866 -07 000000610 INF: ===================  ===================
17-03-17 16:01:04.866 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - PumpToFlowcell start
17-03-17 16:01:04.866 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:01:04.886 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:01:04.886 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 16:01:04.886 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 16:01:05.176 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:01:05.196 -07 000000610 INF: ReagentValve: Recv 0264\r
17-03-17 16:01:05.196 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 612 steps, expected 612. Error = 0 steps (0.0%)
17-03-17 16:01:05.246 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:01:05.266 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 16:01:05.266 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:01:05.366 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24) ===================
17-03-17 16:01:05.366 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24), Aspirating port BypassPort ===================
17-03-17 16:01:05.366 -07 000000610 INF: LanePump: Xmit /1V400BP1500R\r
17-03-17 16:01:05.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:06.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:06.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:07.866 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.990437,
17-03-17 16:01:11.536 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:11.566 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:11.796 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:11.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:11.986 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:12.016 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:12.436 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:12.466 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:12.886 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:12.916 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:13.226 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.990437,
17-03-17 16:01:13.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:13.366 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:13.366 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 16:01:13.366 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24) ===================
17-03-17 16:01:13.496 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:14.036 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:01:14.036 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:01:14.036 -07 000000610 INF: ===================  ===================
17-03-17 16:01:14.036 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:14.036 -07 000000610 INF: =================== Dispense to DispenseToWaste, Dispensing port OutputPort ===================
17-03-17 16:01:14.166 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:14.196 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:01:14.196 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:01:14.326 -07 000000610 INF: LanePump: Xmit /1V500OA0R\r
17-03-17 16:01:14.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:16.796 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:16.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:18.586 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.999695,
17-03-17 16:01:19.286 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:19.316 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:19.736 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:19.766 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:20.186 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:20.216 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:20.636 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:20.666 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:20.666 -07 000000610 INF: LanePump: Waited 6299 ms for pump motion to complete
17-03-17 16:01:20.666 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:20.666 -07 000000610 INF: ===================  ===================
17-03-17 16:01:20.666 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:20.666 -07 000000610 INF: =================== Dispense to DispenseToWaste, Dispensing port OutputPort ===================
17-03-17 16:01:20.796 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:20.826 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 16:01:20.826 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 16:01:20.956 -07 000000610 INF: LanePump: Xmit /1V500OA0R\r
17-03-17 16:01:20.996 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:21.426 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:21.456 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:21.456 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:01:21.456 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:21.456 -07 000000610 INF: ===================  ===================
17-03-17 16:01:21.456 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24) ===================
17-03-17 16:01:21.456 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24), Aspirating port BypassPort ===================
17-03-17 16:01:21.586 -07 000000610 INF: LanePump: Xmit /1V400BP1500R\r
17-03-17 16:01:21.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:21.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:21.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:23.946 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.998398,
17-03-17 16:01:26.796 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:26.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:27.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:27.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:28.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:28.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:28.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:28.686 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:29.106 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:29.136 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:29.306 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.981178,
17-03-17 16:01:29.556 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:29.586 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:29.586 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 16:01:29.586 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24) ===================
17-03-17 16:01:29.716 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:29.746 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:01:29.746 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:01:29.746 -07 000000610 INF: ===================  ===================
17-03-17 16:01:29.746 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:29.746 -07 000000610 INF: =================== Dispense to DispenseToWaste, Dispensing port OutputPort ===================
17-03-17 16:01:29.876 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:29.916 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:01:29.916 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:01:30.046 -07 000000610 INF: LanePump: Xmit /1V500OA0R\r
17-03-17 16:01:30.086 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:31.796 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:31.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:34.666 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.993102,
17-03-17 16:01:35.006 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:35.036 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:35.456 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:35.486 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:35.906 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:35.936 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:36.356 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:36.386 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:36.386 -07 000000610 INF: LanePump: Waited 6299 ms for pump motion to complete
17-03-17 16:01:36.386 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:36.386 -07 000000610 INF: ===================  ===================
17-03-17 16:01:36.386 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:36.386 -07 000000610 INF: =================== Dispense to DispenseToWaste, Dispensing port OutputPort ===================
17-03-17 16:01:36.516 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:36.546 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 16:01:36.546 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 16:01:36.676 -07 000000610 INF: LanePump: Xmit /1V500OA0R\r
17-03-17 16:01:36.716 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:36.796 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:36.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:37.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:37.176 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:37.176 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:01:37.176 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:37.176 -07 000000610 INF: ===================  ===================
17-03-17 16:01:37.176 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24) ===================
17-03-17 16:01:37.176 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24), Aspirating port BypassPort ===================
17-03-17 16:01:37.306 -07 000000610 INF: LanePump: Xmit /1V400BP1500R\r
17-03-17 16:01:37.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:40.026 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.997065,
17-03-17 16:01:41.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:41.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:43.476 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:43.506 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:43.926 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:43.956 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:44.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:44.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:44.826 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:44.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:45.276 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:45.306 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:45.306 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 16:01:45.306 -07 000000610 INF: =================== Aspirate from Aspirate from Bypass (24) ===================
17-03-17 16:01:45.386 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 5.007657,
17-03-17 16:01:45.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:45.466 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:01:45.466 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:01:45.466 -07 000000610 INF: ===================  ===================
17-03-17 16:01:45.466 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:45.466 -07 000000610 INF: =================== Dispense to DispenseToWaste, Dispensing port OutputPort ===================
17-03-17 16:01:45.596 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:45.626 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:01:45.626 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:01:45.756 -07 000000610 INF: LanePump: Xmit /1V500OA0R\r
17-03-17 16:01:45.796 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:46.796 -07 000000515 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:46.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:50.716 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:50.746 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:50.746 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.999695,
17-03-17 16:01:51.166 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:51.196 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:51.616 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:51.646 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:51.796 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:51.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:01:52.066 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:01:52.096 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:01:52.096 -07 000000610 INF: LanePump: Waited 6299 ms for pump motion to complete
17-03-17 16:01:52.096 -07 000000610 INF: =================== Dispense to DispenseToWaste ===================
17-03-17 16:01:52.096 -07 000000610 INF: ===================  ===================
17-03-17 16:01:52.096 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:01:52.096 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:01:52.116 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 16:01:52.116 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 8. Moving 8 positions.
17-03-17 16:01:52.116 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:01:52.806 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:01:52.826 -07 000000610 INF: ReagentValve: Recv 0677\r
17-03-17 16:01:52.826 -07 000000610 INF: ReagentValve: Move+ from 24 to 8 took 1655 steps, expected 1633. Error = 22 steps (1.3%)
17-03-17 16:01:52.876 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:01:52.896 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:01:52.896 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:01:52.996 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:01:52.996 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 16:01:52.996 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:01:53.026 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 16:01:53.026 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 16:01:53.026 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:01:53.156 -07 000000610 INF: LanePump: Xmit /1V50IP1800R\r
17-03-17 16:01:53.196 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:01:56.106 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.981178,
17-03-17 16:01:56.796 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:01:56.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:01.466 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.97718,
17-03-17 16:02:01.796 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:01.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:06.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:06.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:06.826 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.96922,
17-03-17 16:02:11.796 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:11.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:12.186 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.970552,
17-03-17 16:02:16.796 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:16.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:17.546 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.962592,
17-03-17 16:02:21.796 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:21.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:22.906 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.948006,
17-03-17 16:02:26.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:26.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:29.146 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.953336,
17-03-17 16:02:31.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:31.796 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:34.506 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.961296,
17-03-17 16:02:36.796 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:36.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:39.866 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.970552,
17-03-17 16:02:41.796 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:41.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:45.226 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.957298,
17-03-17 16:02:46.796 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:46.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:50.636 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.96659,
17-03-17 16:02:51.806 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:51.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:02:55.996 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.950671,
17-03-17 16:02:56.806 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:02:56.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:01.356 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.954669,
17-03-17 16:03:01.806 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:01.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:03.616 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:03.646 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:04.066 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:04.096 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:04.516 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:04.546 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:04.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:04.996 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:05.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:05.446 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:05.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:05.896 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:06.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:06.346 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:03:06.346 -07 000000610 INF: LanePump: Waited 73148 ms for pump motion to complete
17-03-17 16:03:06.346 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:03:06.476 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:03:06.506 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:03:06.506 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:03:06.636 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:03:06.666 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:03:06.666 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:03:06.666 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:03:06.716 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.940083,
17-03-17 16:03:06.796 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:03:06.806 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:06.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:06.826 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:03:07.256 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:07.286 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:03:07.286 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:03:07.286 -07 000000610 INF: ===================  ===================
17-03-17 16:03:07.286 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 16:03:07.286 -07 000000610 INF: =================== Flow Cell Temp 40°, FC temperature to 40° ===================
17-03-17 16:03:07.286 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 40000000\n [FlowCellTempControl]
17-03-17 16:03:07.286 -07 000000532 INF: FPGA: Recv TEC2TEMP 
17-03-17 16:03:07.296 -07 000000610 INF: FPGA: 'TEC2TEMP 0 40000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 16:03:07.296 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 16:03:07.296 -07 000000545 INF: FPGA: Recv TEC2EN 
17-03-17 16:03:07.306 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 16:03:07.306 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 16:03:07.306 -07 000000610 INF: WaitCommand(30000) start
17-03-17 16:03:11.806 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:11.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:12.076 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.958631,
17-03-17 16:03:16.806 -07 000000514 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:16.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:17.436 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.948006,
17-03-17 16:03:21.806 -07 000000514 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:21.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:22.796 -07 000000515 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.921466,
17-03-17 16:03:26.806 -07 000000572 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:26.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:28.156 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.910845,
17-03-17 16:03:31.806 -07 000000515 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:31.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:33.516 -07 000000515 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.912213,
17-03-17 16:03:36.806 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:36.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:37.316 -07 000000610 INF: WaitCommand(30000) end
17-03-17 16:03:37.316 -07 000000610 INF: ===================  ===================
17-03-17 16:03:37.316 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:03:37.316 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:03:37.316 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:03:37.336 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:03:37.336 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 5. Moving 3 positions.
17-03-17 16:03:37.336 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:03:37.636 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:03:37.656 -07 000000610 INF: ReagentValve: Recv 0277\r
17-03-17 16:03:37.656 -07 000000610 INF: ReagentValve: Move- from 8 to 5 took 631 steps, expected 612. Error = 19 steps (3.1%)
17-03-17 16:03:37.706 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:03:37.726 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:03:37.726 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:03:37.826 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:03:37.826 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 16:03:37.826 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:03:37.856 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:03:37.856 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:03:37.986 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:03:38.016 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:03:38.016 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:03:38.876 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.934753,
17-03-17 16:03:41.806 -07 000000464 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:41.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:42.186 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:42.216 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:03:42.216 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:03:42.346 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:03:42.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:42.806 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:42.836 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:03:42.836 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:03:42.966 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:03:42.996 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:03:42.996 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:03:43.126 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:03:43.166 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:44.236 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.926795,
17-03-17 16:03:46.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:46.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:48.986 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:49.016 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:49.436 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:49.466 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:49.886 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:49.916 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:50.276 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.942712,
17-03-17 16:03:50.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:50.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:50.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:50.816 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:03:50.816 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 16:03:50.816 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:03:50.946 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 16:03:50.986 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:51.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:03:51.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=0, R2=0, Total=0. Bubbles this run: R1=0, R2=0, Total=0. Warn if over 250 bubbles per interval.
17-03-17 16:03:55.636 -07 000000631 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.920134,
17-03-17 16:03:56.806 -07 000000572 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-17 16:03:56.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=4, R2=3, Total=7. Warn if over 250 bubbles per interval.
17-03-17 16:03:58.406 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:58.436 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:58.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:58.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:59.306 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:59.336 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:03:59.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:03:59.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:00.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:00.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:00.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:00.686 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:00.686 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 16:04:00.686 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:04:00.816 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:00.846 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:00.846 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:00.976 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:00.996 -07 000000588 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.908216,
17-03-17 16:04:01.006 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:01.006 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:01.006 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:04:01.136 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:04:01.166 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:01.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:01.626 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:01.626 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:04:01.626 -07 000000610 INF: ===================  ===================
17-03-17 16:04:01.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 16:04:01.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=4, R2=5, Total=9. Warn if over 250 bubbles per interval.
17-03-17 16:04:02.846 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 16:04:02.846 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:04:02.846 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:04:02.866 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:04:02.866 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 7. Moving 2 positions.
17-03-17 16:04:02.866 -07 000000610 INF: ReagentValve: Xmit +07\r
17-03-17 16:04:03.086 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:04:03.106 -07 000000610 INF: ReagentValve: Recv 01A9\r
17-03-17 16:04:03.106 -07 000000610 INF: ReagentValve: Move+ from 5 to 7 took 425 steps, expected 408. Error = 17 steps (4.2%)
17-03-17 16:04:03.156 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:04:03.176 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:04:03.176 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:04:03.276 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:04:03.276 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 16:04:03.276 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:03.306 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:03.306 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:03.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:03.466 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:03.466 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:06.356 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.930757,
17-03-17 16:04:06.806 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:06.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=4, R2=5, Total=9. Warn if over 250 bubbles per interval.
17-03-17 16:04:07.636 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:07.666 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:07.666 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:04:07.796 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:04:07.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:08.256 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:08.286 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:08.286 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:04:08.416 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:08.446 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:08.446 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:08.576 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:04:08.616 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:11.716 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.94138,
17-03-17 16:04:11.806 -07 000000572 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:11.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=4, R2=5, Total=9. Warn if over 250 bubbles per interval.
17-03-17 16:04:14.436 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:14.466 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:14.886 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:14.916 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:15.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:15.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:15.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:15.816 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:16.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:16.266 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:16.266 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 16:04:16.266 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:04:16.396 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 16:04:16.436 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:16.806 -07 000000631 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:16.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=4, R2=5, Total=9. Warn if over 250 bubbles per interval.
17-03-17 16:04:17.076 -07 000000572 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.910845,
17-03-17 16:04:21.806 -07 000000514 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 16:04:21.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:22.436 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.908216,
17-03-17 16:04:23.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:23.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:24.306 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:24.336 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:24.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:24.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:25.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:25.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:25.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:25.686 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:26.106 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:26.136 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:26.136 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 16:04:26.136 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:04:26.266 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:26.296 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:26.296 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:26.426 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:26.456 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:26.456 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:26.456 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:04:26.586 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:04:26.616 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:26.806 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:26.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:27.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:27.076 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:27.076 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:04:27.076 -07 000000610 INF: ===================  ===================
17-03-17 16:04:27.796 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.904221,
17-03-17 16:04:28.296 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 16:04:28.296 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 16:04:28.296 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:04:28.316 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:04:28.316 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 3. Moving 4 positions.
17-03-17 16:04:28.316 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 16:04:28.696 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:04:28.716 -07 000000610 INF: ReagentValve: Recv 0345\r
17-03-17 16:04:28.716 -07 000000610 INF: ReagentValve: Move- from 7 to 3 took 837 steps, expected 817. Error = 20 steps (2.4%)
17-03-17 16:04:28.766 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:04:28.786 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:04:28.786 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:04:28.886 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:04:28.886 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 16:04:28.886 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:28.916 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:28.916 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:29.046 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:29.076 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:29.076 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:31.806 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:31.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:33.156 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.910845,
17-03-17 16:04:33.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:33.276 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:33.276 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:04:33.406 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:04:33.436 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:33.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:33.896 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:33.896 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:04:34.026 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:34.056 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:34.056 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:34.186 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:04:34.226 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:36.806 -07 000000567 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:36.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:38.516 -07 000000572 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.905552,
17-03-17 16:04:40.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:40.076 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:40.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:40.526 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:40.946 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:40.976 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:41.396 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:41.426 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:41.806 -07 000000588 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:41.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:41.846 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:41.876 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:41.876 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 16:04:41.876 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:04:42.006 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 16:04:42.046 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:43.876 -07 000000567 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.889604,
17-03-17 16:04:46.806 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:46.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:49.236 -07 000000633 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.872326,
17-03-17 16:04:49.466 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:49.496 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:49.916 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:49.946 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:50.366 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:50.396 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:50.816 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:50.846 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:51.266 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:51.296 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:04:51.716 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:51.746 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:51.746 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 16:04:51.746 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:04:51.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:51.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:51.876 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:51.906 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:51.906 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:52.036 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:04:52.066 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:04:52.066 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:04:52.066 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:04:52.196 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:04:52.226 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:52.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:04:52.686 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:04:52.686 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:04:52.686 -07 000000610 INF: ===================  ===================
17-03-17 16:04:52.686 -07 000000610 INF: =================== Flow Cell Temp 75° ===================
17-03-17 16:04:52.686 -07 000000610 INF: =================== Flow Cell Temp 75°, FC temperature to 75° ===================
17-03-17 16:04:52.686 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 75000000\n [FlowCellTempControl]
17-03-17 16:04:52.686 -07 000000529 INF: FPGA: Recv TEC2TEMP 
17-03-17 16:04:52.696 -07 000000610 INF: FPGA: 'TEC2TEMP 0 75000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 16:04:52.696 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 16:04:52.696 -07 000000529 INF: FPGA: Recv TEC2EN 
17-03-17 16:04:52.706 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 16:04:52.706 -07 000000610 INF: =================== Flow Cell Temp 75° ===================
17-03-17 16:04:52.706 -07 000000610 INF: WaitCommand(30000) start
17-03-17 16:04:54.596 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.870995,
17-03-17 16:04:56.806 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:04:56.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:04:59.956 -07 000000633 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.864336,
17-03-17 16:05:01.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:01.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:05.316 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.872326,
17-03-17 16:05:06.906 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:06.906 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:10.676 -07 000000633 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.870995,
17-03-17 16:05:11.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:11.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:16.036 -07 000000572 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.905552,
17-03-17 16:05:16.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:16.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:21.396 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.8936,
17-03-17 16:05:21.806 -07 000000588 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:21.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:22.716 -07 000000610 INF: WaitCommand(30000) end
17-03-17 16:05:22.716 -07 000000610 INF: ===================  ===================
17-03-17 16:05:22.716 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:05:22.716 -07 000000610 INF: ReagentValve: Go to position 17 - PumpToFlowcell start
17-03-17 16:05:22.716 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:05:22.736 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:05:22.736 -07 000000610 INF: ReagentValve: Taking longest path '+' from 3 to 17 to avoid 18. Moving 14 positions.
17-03-17 16:05:22.736 -07 000000610 INF: ReagentValve: Xmit +11\r
17-03-17 16:05:23.886 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:05:23.906 -07 000000610 INF: ReagentValve: Recv 0B3C\r
17-03-17 16:05:23.906 -07 000000610 INF: ReagentValve: Move+ from 3 to 17 took 2876 steps, expected 2858. Error = 18 steps (0.6%)
17-03-17 16:05:23.956 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:05:23.976 -07 000000610 INF: ReagentValve: Recv 11\r
17-03-17 16:05:23.976 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:05:24.076 -07 000000610 INF: =================== Pumping Reagent TMP (17) ===================
17-03-17 16:05:24.076 -07 000000610 INF: LanePump: Pumping from 17, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 16:05:24.076 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:05:24.106 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:05:24.106 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:05:24.236 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:05:24.266 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:05:24.266 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:05:26.756 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.89756,
17-03-17 16:05:26.806 -07 000000572 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:26.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:28.436 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:28.466 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:05:28.466 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:05:28.596 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:05:28.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:29.056 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:29.086 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:05:29.086 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:05:29.216 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:05:29.246 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:05:29.246 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:05:29.376 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:05:29.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:31.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:31.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:32.116 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.882945,
17-03-17 16:05:35.226 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:35.256 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:35.676 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:35.706 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:36.126 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:36.156 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:36.576 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:36.606 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:36.806 -07 000000588 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:36.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:37.026 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:37.056 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:05:37.056 -07 000000610 INF: LanePump: Waited 7650 ms for pump motion to complete
17-03-17 16:05:37.056 -07 000000610 INF: =================== Pumping Reagent TMP (17), Aspirating port InputPort ===================
17-03-17 16:05:37.186 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 16:05:37.226 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:37.476 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.873658,
17-03-17 16:05:41.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:41.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:42.836 -07 000000572 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.881649,
17-03-17 16:05:44.646 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:44.676 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:45.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:45.126 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:45.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:45.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:45.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:46.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:46.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:46.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:05:46.806 -07 000000588 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:46.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:46.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:46.926 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:05:46.926 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 16:05:46.926 -07 000000610 INF: =================== Pumping Reagent TMP (17) ===================
17-03-17 16:05:47.056 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:05:47.086 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:05:47.086 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:05:47.216 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:05:47.246 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:05:47.246 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:05:47.246 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:05:47.376 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:05:47.406 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:05:47.836 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:05:47.866 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:05:47.866 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:05:47.866 -07 000000610 INF: ===================  ===================
17-03-17 16:05:47.866 -07 000000610 INF: WaitCommand(300000) start
17-03-17 16:05:48.196 -07 000000572 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.856382,
17-03-17 16:05:51.806 -07 000000572 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:51.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:53.556 -07 000000572 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.872326,
17-03-17 16:05:56.806 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:05:56.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:05:58.916 -07 000000588 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.881649,
17-03-17 16:06:01.916 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:01.916 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:04.276 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.889604,
17-03-17 16:06:06.806 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:06.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:09.636 -07 000000633 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.876321,
17-03-17 16:06:11.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:11.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:14.996 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.888272,
17-03-17 16:06:16.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:16.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:20.356 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.880317,
17-03-17 16:06:21.806 -07 000000572 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:21.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:25.716 -07 000000588 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.882945,
17-03-17 16:06:26.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:26.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:31.076 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.852387,
17-03-17 16:06:31.806 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:31.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:36.436 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.839108,
17-03-17 16:06:36.806 -07 000000588 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:36.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:41.796 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.828456,
17-03-17 16:06:41.806 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:41.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:46.806 -07 000000529 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:46.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:47.156 -07 000000514 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.85505,
17-03-17 16:06:51.806 -07 000000514 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:51.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:52.516 -07 000000529 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.841734,
17-03-17 16:06:56.806 -07 000000588 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:06:56.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:06:57.876 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.839108,
17-03-17 16:07:01.806 -07 000000025 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:01.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:03.236 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.848392,
17-03-17 16:07:06.806 -07 000000464 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:06.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:08.596 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.824427,
17-03-17 16:07:11.806 -07 000000464 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:11.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:13.956 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.829752,
17-03-17 16:07:16.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:16.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:19.316 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.865704,
17-03-17 16:07:21.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:21.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:24.676 -07 000000633 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.833782,
17-03-17 16:07:26.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:26.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:30.036 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.840403,
17-03-17 16:07:31.806 -07 000000025 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:31.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:35.396 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.847061,
17-03-17 16:07:36.806 -07 000000025 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:36.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:40.756 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.828456,
17-03-17 16:07:41.806 -07 000000588 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:41.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:46.116 -07 000000588 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.808452,
17-03-17 16:07:46.986 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:46.986 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:51.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:51.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:52.336 -07 000000025 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.828456,
17-03-17 16:07:56.806 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:07:56.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:07:57.696 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.847061,
17-03-17 16:08:01.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:01.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:03.056 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.848392,
17-03-17 16:08:06.806 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:06.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:08.416 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.859045,
17-03-17 16:08:11.806 -07 000000025 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:11.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:13.776 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.801796,
17-03-17 16:08:16.806 -07 000000025 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:16.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:19.136 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.808452,
17-03-17 16:08:21.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:21.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:24.496 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.805789,
17-03-17 16:08:26.806 -07 000000025 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:26.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:29.856 -07 000000025 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.819137,
17-03-17 16:08:31.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:31.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:35.216 -07 000000633 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.809783,
17-03-17 16:08:36.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:36.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:40.576 -07 000000633 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.813776,
17-03-17 16:08:41.806 -07 000000633 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:41.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:45.936 -07 000000025 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.844398,
17-03-17 16:08:46.806 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:46.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:51.296 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.833782,
17-03-17 16:08:51.806 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:51.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:08:56.656 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.825794,
17-03-17 16:08:56.806 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:08:56.806 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:01.806 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:01.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:02.016 -07 000000421 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.800501,
17-03-17 16:09:06.816 -07 000000421 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:06.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:07.376 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.824427,
17-03-17 16:09:11.816 -07 000000464 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:11.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:12.736 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.792479,
17-03-17 16:09:16.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:16.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:18.096 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.765825,
17-03-17 16:09:21.816 -07 000000464 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:21.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:24.336 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.789816,
17-03-17 16:09:26.816 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:26.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:29.696 -07 000000464 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.767156,
17-03-17 16:09:31.816 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:31.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:35.056 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.804458,
17-03-17 16:09:36.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:36.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:40.416 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.807157,
17-03-17 16:09:41.816 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:41.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:45.776 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.81777,
17-03-17 16:09:46.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:46.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:51.136 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.788486,
17-03-17 16:09:51.816 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:51.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:09:56.496 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.809783,
17-03-17 16:09:56.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:09:56.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:01.816 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:01.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:01.856 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.799134,
17-03-17 16:10:06.816 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:06.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:07.216 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.776507,
17-03-17 16:10:11.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:11.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:12.576 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.795141,
17-03-17 16:10:16.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:16.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:17.936 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.773846,
17-03-17 16:10:21.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:21.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:23.296 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.77514,
17-03-17 16:10:26.816 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:26.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:28.656 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.793809,
17-03-17 16:10:31.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:31.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:34.016 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.765825,
17-03-17 16:10:36.816 -07 000000485 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:36.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:39.376 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.763164,
17-03-17 16:10:41.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:41.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:44.736 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.740471,
17-03-17 16:10:46.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:46.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:47.876 -07 000000610 INF: WaitCommand(300000) end
17-03-17 16:10:47.876 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 16:10:47.876 -07 000000610 INF: =================== Flow Cell Temp 40°, FC temperature to 40° ===================
17-03-17 16:10:47.876 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 40000000\n [FlowCellTempControl]
17-03-17 16:10:47.876 -07 000000545 INF: FPGA: Recv TEC2TEMP 
17-03-17 16:10:47.886 -07 000000610 INF: FPGA: 'TEC2TEMP 0 40000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 16:10:47.886 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 16:10:47.886 -07 000000545 INF: FPGA: Recv TEC2EN 
17-03-17 16:10:47.896 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 16:10:47.896 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 16:10:47.896 -07 000000610 INF: WaitCommand(300000) start
17-03-17 16:10:50.096 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.785823,
17-03-17 16:10:51.816 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:51.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:10:55.456 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.791148,
17-03-17 16:10:56.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:10:56.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:00.816 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.759135,
17-03-17 16:11:01.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:01.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:06.176 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.77514,
17-03-17 16:11:06.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:06.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:11.536 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.736479,
17-03-17 16:11:11.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:11.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:16.816 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:16.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:16.896 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.753813,
17-03-17 16:11:21.816 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:21.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:22.256 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.767156,
17-03-17 16:11:26.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:26.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:27.616 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.771148,
17-03-17 16:11:31.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:31.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:32.976 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.7805,
17-03-17 16:11:36.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:36.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:38.336 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.751152,
17-03-17 16:11:41.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:41.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:43.696 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.741838,
17-03-17 16:11:46.816 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:46.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:49.056 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.764494,
17-03-17 16:11:51.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:51.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:54.416 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.739141,
17-03-17 16:11:56.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:11:56.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:11:59.776 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.763164,
17-03-17 16:12:01.816 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:01.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:05.136 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.74849,
17-03-17 16:12:06.816 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:06.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:10.496 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.7258,
17-03-17 16:12:11.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:11.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:15.856 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.711131,
17-03-17 16:12:16.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:16.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:21.216 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.733819,
17-03-17 16:12:21.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:21.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:26.576 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.732488,
17-03-17 16:12:26.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:26.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:31.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:31.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:31.936 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.763164,
17-03-17 16:12:36.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:36.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:37.296 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.768486,
17-03-17 16:12:41.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:41.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:42.656 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.777838,
17-03-17 16:12:46.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:46.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:48.016 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.73781,
17-03-17 16:12:51.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:51.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:53.376 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.723139,
17-03-17 16:12:56.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:12:56.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:12:58.736 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.715121,
17-03-17 16:13:01.816 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:01.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:04.096 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.731158,
17-03-17 16:13:06.816 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:06.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:09.456 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.731158,
17-03-17 16:13:11.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:11.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:14.816 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.72713,
17-03-17 16:13:16.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:16.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:20.176 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.739141,
17-03-17 16:13:21.816 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:21.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:25.536 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.728461,
17-03-17 16:13:26.816 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:26.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:30.896 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.721809,
17-03-17 16:13:31.816 -07 000000515 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:31.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:36.256 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.757841,
17-03-17 16:13:36.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:36.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:41.616 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.701784,
17-03-17 16:13:41.816 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:41.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:46.816 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:46.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:46.976 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.713791,
17-03-17 16:13:51.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:51.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:53.166 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.716452,
17-03-17 16:13:56.816 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:13:56.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:13:58.526 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.741838,
17-03-17 16:14:01.816 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:01.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:03.886 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.701784,
17-03-17 16:14:06.816 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:06.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:09.246 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.703114,
17-03-17 16:14:11.816 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:11.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:14.606 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.687081,
17-03-17 16:14:16.816 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:16.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:19.966 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.696427,
17-03-17 16:14:21.816 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:21.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:25.326 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.705774,
17-03-17 16:14:26.816 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:26.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:30.686 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.713791,
17-03-17 16:14:31.816 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:31.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:36.046 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.705774,
17-03-17 16:14:36.816 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:36.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:41.406 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.701784,
17-03-17 16:14:41.816 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:41.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:46.766 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.680395,
17-03-17 16:14:46.816 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:46.816 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:51.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:51.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:52.126 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.681725,
17-03-17 16:14:56.826 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:14:56.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:14:57.486 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.713791,
17-03-17 16:15:01.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:01.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:02.846 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.712461,
17-03-17 16:15:06.816 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:06.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:08.206 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.691071,
17-03-17 16:15:11.816 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:11.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:13.566 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.668354,
17-03-17 16:15:16.816 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:16.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:19.626 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.681725,
17-03-17 16:15:21.826 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:21.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:24.986 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.691071,
17-03-17 16:15:26.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:26.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:30.346 -07 000000485 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.712461,
17-03-17 16:15:31.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:31.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:35.706 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.696427,
17-03-17 16:15:36.826 -07 000000485 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:36.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:41.066 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.680395,
17-03-17 16:15:41.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:41.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:46.426 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.675039,
17-03-17 16:15:46.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:46.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:47.916 -07 000000610 INF: WaitCommand(300000) end
17-03-17 16:15:47.916 -07 000000610 INF: ===================  ===================
17-03-17 16:15:47.916 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:15:47.916 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 16:15:47.916 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:15:47.936 -07 000000610 INF: ReagentValve: Recv 11\r
17-03-17 16:15:47.936 -07 000000610 INF: ReagentValve: Taking longest path '-' from 17 to 3 to avoid 18. Moving 14 positions.
17-03-17 16:15:47.936 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 16:15:49.086 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:15:49.106 -07 000000610 INF: ReagentValve: Recv 0B3C\r
17-03-17 16:15:49.106 -07 000000610 INF: ReagentValve: Move- from 17 to 3 took 2876 steps, expected 2858. Error = 18 steps (0.6%)
17-03-17 16:15:49.156 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:15:49.176 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:15:49.176 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:15:49.276 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:15:49.276 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:15:49.276 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:15:49.306 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 16:15:49.306 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 16:15:49.306 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:15:49.436 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:15:49.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:15:50.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:15:50.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:15:51.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:15:51.276 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:15:51.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:15:51.726 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:15:51.726 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:15:51.726 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:15:51.786 -07 000000485 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.668354,
17-03-17 16:15:51.826 -07 000000485 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:51.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:51.856 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:15:51.886 -07 000000610 INF: LanePump: Recv /0`1830(0x03)\r\n
17-03-17 16:15:51.886 -07 000000610 INF: LanePump: Current Position of Pump is: 1830
17-03-17 16:15:52.016 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:15:52.906 -07 000000610 INF: LanePump: Recv /0`1830(0x03)\r\n
17-03-17 16:15:52.906 -07 000000610 INF: LanePump: Current Position of Pump is: 1830
17-03-17 16:15:52.906 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:15:53.036 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:15:53.066 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:15:53.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:15:53.526 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:15:53.526 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:15:53.526 -07 000000610 INF: ===================  ===================
17-03-17 16:15:53.526 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:15:56.826 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:15:56.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:15:57.146 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.684385,
17-03-17 16:16:01.826 -07 000000515 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:01.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:02.506 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.668354,
17-03-17 16:16:06.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:06.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:07.866 -07 000000515 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.664365,
17-03-17 16:16:11.536 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:16:11.536 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:16:11.536 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:16:11.656 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:11.686 -07 000000610 INF: LanePump: Recv /0`1830(0x03)\r\n
17-03-17 16:16:11.686 -07 000000610 INF: LanePump: Current Position of Pump is: 1830
17-03-17 16:16:11.686 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:16:11.816 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:16:11.826 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:11.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:11.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:13.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:13.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:13.226 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.687081,
17-03-17 16:16:13.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:13.656 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:14.076 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:14.106 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:14.106 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:16:14.106 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:16:14.236 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:14.266 -07 000000610 INF: LanePump: Recv /0`1860(0x03)\r\n
17-03-17 16:16:14.266 -07 000000610 INF: LanePump: Current Position of Pump is: 1860
17-03-17 16:16:14.396 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:14.426 -07 000000610 INF: LanePump: Recv /0`1860(0x03)\r\n
17-03-17 16:16:14.426 -07 000000610 INF: LanePump: Current Position of Pump is: 1860
17-03-17 16:16:14.426 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:16:14.556 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:16:14.586 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:15.016 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:15.046 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:15.046 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:16:15.046 -07 000000610 INF: ===================  ===================
17-03-17 16:16:15.046 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:16:16.826 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:16.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:18.586 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.684385,
17-03-17 16:16:21.826 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:21.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:23.946 -07 000000460 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.685751,
17-03-17 16:16:26.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:26.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:29.306 -07 000000485 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.662999,
17-03-17 16:16:31.826 -07 000000515 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:31.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:33.056 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:16:33.056 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:16:33.056 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:16:33.176 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:33.206 -07 000000610 INF: LanePump: Recv /0`1860(0x03)\r\n
17-03-17 16:16:33.206 -07 000000610 INF: LanePump: Current Position of Pump is: 1860
17-03-17 16:16:33.206 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:16:33.336 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:16:33.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:34.666 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.66706,
17-03-17 16:16:34.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:34.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:35.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:35.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:35.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:35.626 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:35.626 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:16:35.626 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:16:35.756 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:35.786 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 16:16:35.786 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 16:16:35.916 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:35.946 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 16:16:35.946 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 16:16:35.946 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:16:36.076 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:16:36.106 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:36.536 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:36.566 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:36.566 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:16:36.566 -07 000000610 INF: ===================  ===================
17-03-17 16:16:36.566 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:16:36.826 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:36.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:40.026 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.669684,
17-03-17 16:16:41.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:41.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:45.386 -07 000000485 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.668354,
17-03-17 16:16:46.826 -07 000000460 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:46.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:50.746 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.65635,
17-03-17 16:16:51.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:51.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:54.576 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:16:54.576 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:16:54.576 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:16:54.696 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:54.726 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 16:16:54.726 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 16:16:54.726 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:16:54.856 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:16:54.896 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:56.106 -07 000000515 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.700418,
17-03-17 16:16:56.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:56.246 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:56.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:56.696 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:16:56.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:16:56.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:16:57.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:57.146 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:57.146 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:16:57.146 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:16:57.276 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:57.306 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 16:16:57.306 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 16:16:57.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:16:57.466 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 16:16:57.466 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 16:16:57.466 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:16:57.596 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:16:57.626 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:58.056 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:16:58.086 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:16:58.086 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:16:58.086 -07 000000610 INF: ===================  ===================
17-03-17 16:16:58.086 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:17:01.466 -07 000000515 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.677735,
17-03-17 16:17:01.826 -07 000000515 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:01.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:06.826 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.662999,
17-03-17 16:17:06.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:06.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:11.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:11.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:12.186 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.655021,
17-03-17 16:17:16.096 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:17:16.096 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:17:16.096 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:17:16.216 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:17:16.246 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 16:17:16.246 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 16:17:16.246 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:17:16.376 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:17:16.416 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:17:16.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:16.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:17.546 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.683055,
17-03-17 16:17:17.736 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:17.766 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:17:18.186 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:18.216 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:17:18.636 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:18.666 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:17:18.666 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:17:18.666 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:17:18.796 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:17:18.826 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 16:17:18.826 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 16:17:18.956 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:17:18.986 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 16:17:18.986 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 16:17:18.986 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:17:19.116 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:17:19.146 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:17:19.576 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:19.606 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:17:19.606 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:17:19.606 -07 000000610 INF: ===================  ===================
17-03-17 16:17:19.606 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:17:21.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:21.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:22.906 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.669684,
17-03-17 16:17:26.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:26.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:29.036 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.650996,
17-03-17 16:17:31.826 -07 000000485 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:31.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:34.396 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.649666,
17-03-17 16:17:36.826 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:36.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:37.616 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:17:37.616 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:17:37.616 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:17:37.736 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:17:37.766 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 16:17:37.766 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 16:17:37.766 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:17:37.896 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:17:37.936 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:17:39.256 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:39.286 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:17:39.706 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:39.736 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:17:39.756 -07 000000485 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.650996,
17-03-17 16:17:40.156 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:40.186 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:17:40.186 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:17:40.186 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:17:40.316 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:17:40.346 -07 000000610 INF: LanePump: Recv /0`1980(0x03)\r\n
17-03-17 16:17:40.346 -07 000000610 INF: LanePump: Current Position of Pump is: 1980
17-03-17 16:17:40.476 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:17:40.506 -07 000000610 INF: LanePump: Recv /0`1980(0x03)\r\n
17-03-17 16:17:40.506 -07 000000610 INF: LanePump: Current Position of Pump is: 1980
17-03-17 16:17:40.506 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:17:40.636 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:17:40.666 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:17:41.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:17:41.126 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:17:41.126 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:17:41.126 -07 000000610 INF: ===================  ===================
17-03-17 16:17:41.126 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:17:41.826 -07 000000485 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:41.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:45.116 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.65901,
17-03-17 16:17:46.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:46.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:50.476 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.650996,
17-03-17 16:17:51.826 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:51.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:55.836 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.650996,
17-03-17 16:17:56.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:17:56.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:17:59.136 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:17:59.136 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:17:59.136 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:17:59.256 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:17:59.286 -07 000000610 INF: LanePump: Recv /0`1980(0x03)\r\n
17-03-17 16:17:59.286 -07 000000610 INF: LanePump: Current Position of Pump is: 1980
17-03-17 16:17:59.286 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:17:59.416 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:17:59.456 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:00.776 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:00.806 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:01.196 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.661705,
17-03-17 16:18:01.226 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:01.256 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:01.676 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:01.706 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:01.706 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:18:01.706 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:18:01.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:01.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:01.836 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:01.866 -07 000000610 INF: LanePump: Recv /0`2010(0x03)\r\n
17-03-17 16:18:01.866 -07 000000610 INF: LanePump: Current Position of Pump is: 2010
17-03-17 16:18:01.996 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:02.026 -07 000000610 INF: LanePump: Recv /0`2010(0x03)\r\n
17-03-17 16:18:02.026 -07 000000610 INF: LanePump: Current Position of Pump is: 2010
17-03-17 16:18:02.026 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:18:02.156 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:18:02.186 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:02.616 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:02.646 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:02.646 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:18:02.646 -07 000000610 INF: ===================  ===================
17-03-17 16:18:02.646 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:18:06.556 -07 000000485 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.662999,
17-03-17 16:18:06.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:06.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:11.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:11.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:11.916 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.665695,
17-03-17 16:18:16.826 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:16.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:17.276 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.630908,
17-03-17 16:18:20.656 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:18:20.656 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:18:20.656 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:18:20.776 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:20.806 -07 000000610 INF: LanePump: Recv /0`2010(0x03)\r\n
17-03-17 16:18:20.806 -07 000000610 INF: LanePump: Current Position of Pump is: 2010
17-03-17 16:18:20.806 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:18:20.936 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:18:20.976 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:22.096 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:22.096 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:22.296 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:22.326 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:22.636 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.621531,
17-03-17 16:18:22.746 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:22.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:23.196 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:23.226 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:23.226 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:18:23.226 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:18:23.356 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:23.386 -07 000000610 INF: LanePump: Recv /0`2040(0x03)\r\n
17-03-17 16:18:23.386 -07 000000610 INF: LanePump: Current Position of Pump is: 2040
17-03-17 16:18:23.516 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:23.546 -07 000000610 INF: LanePump: Recv /0`2040(0x03)\r\n
17-03-17 16:18:23.546 -07 000000610 INF: LanePump: Current Position of Pump is: 2040
17-03-17 16:18:23.546 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:18:23.676 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:18:23.706 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:24.136 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:24.166 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:24.166 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:18:24.166 -07 000000610 INF: ===================  ===================
17-03-17 16:18:24.166 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:18:26.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:26.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:27.996 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.622896,
17-03-17 16:18:31.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:31.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:33.356 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.617543,
17-03-17 16:18:36.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:36.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:38.716 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.642946,
17-03-17 16:18:41.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:41.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:42.176 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:18:42.176 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:18:42.176 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:18:42.296 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:42.326 -07 000000610 INF: LanePump: Recv /0`2040(0x03)\r\n
17-03-17 16:18:42.326 -07 000000610 INF: LanePump: Current Position of Pump is: 2040
17-03-17 16:18:42.326 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:18:42.456 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:18:42.496 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:43.816 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:43.846 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:44.076 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.626884,
17-03-17 16:18:44.266 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:44.296 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:18:44.716 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:44.746 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:44.746 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:18:44.746 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:18:44.876 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:44.906 -07 000000610 INF: LanePump: Recv /0`2070(0x03)\r\n
17-03-17 16:18:44.906 -07 000000610 INF: LanePump: Current Position of Pump is: 2070
17-03-17 16:18:45.036 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:18:45.066 -07 000000610 INF: LanePump: Recv /0`2070(0x03)\r\n
17-03-17 16:18:45.066 -07 000000610 INF: LanePump: Current Position of Pump is: 2070
17-03-17 16:18:45.066 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:18:45.196 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:18:45.226 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:45.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:18:45.686 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:18:45.686 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:18:45.686 -07 000000610 INF: ===================  ===================
17-03-17 16:18:45.686 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:18:46.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:46.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:49.436 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.609495,
17-03-17 16:18:51.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:51.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:18:54.796 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.609495,
17-03-17 16:18:56.826 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:18:56.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:00.156 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.618872,
17-03-17 16:19:01.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:01.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:03.696 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:19:03.696 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:19:03.696 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:19:03.816 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:03.846 -07 000000610 INF: LanePump: Recv /0`2070(0x03)\r\n
17-03-17 16:19:03.846 -07 000000610 INF: LanePump: Current Position of Pump is: 2070
17-03-17 16:19:03.846 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:19:03.976 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:19:04.016 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:05.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:05.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:05.516 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.612189,
17-03-17 16:19:05.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:05.816 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:06.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:06.266 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:06.266 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:19:06.266 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:19:06.396 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:06.426 -07 000000610 INF: LanePump: Recv /0`2100(0x03)\r\n
17-03-17 16:19:06.426 -07 000000610 INF: LanePump: Current Position of Pump is: 2100
17-03-17 16:19:06.556 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:06.586 -07 000000610 INF: LanePump: Recv /0`2100(0x03)\r\n
17-03-17 16:19:06.586 -07 000000610 INF: LanePump: Current Position of Pump is: 2100
17-03-17 16:19:06.586 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:19:06.716 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:19:06.746 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:06.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:06.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:07.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:07.206 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:07.206 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:19:07.206 -07 000000610 INF: ===================  ===================
17-03-17 16:19:07.206 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:19:10.876 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.585391,
17-03-17 16:19:11.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:11.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:16.236 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.636262,
17-03-17 16:19:16.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:16.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:21.596 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.610824,
17-03-17 16:19:21.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:21.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:25.216 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:19:25.216 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:19:25.216 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:19:25.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:25.366 -07 000000610 INF: LanePump: Recv /0`2100(0x03)\r\n
17-03-17 16:19:25.366 -07 000000610 INF: LanePump: Current Position of Pump is: 2100
17-03-17 16:19:25.366 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:19:25.496 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:19:25.536 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:26.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:26.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:26.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:26.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:26.956 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.606836,
17-03-17 16:19:27.306 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:27.336 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:27.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:27.786 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:27.786 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:19:27.786 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:19:27.916 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:27.946 -07 000000610 INF: LanePump: Recv /0`2130(0x03)\r\n
17-03-17 16:19:27.946 -07 000000610 INF: LanePump: Current Position of Pump is: 2130
17-03-17 16:19:28.076 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:28.106 -07 000000610 INF: LanePump: Recv /0`2130(0x03)\r\n
17-03-17 16:19:28.106 -07 000000610 INF: LanePump: Current Position of Pump is: 2130
17-03-17 16:19:28.106 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:19:28.236 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:19:28.266 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:28.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:28.726 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:28.726 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:19:28.726 -07 000000610 INF: ===================  ===================
17-03-17 16:19:28.726 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:19:31.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:31.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:32.316 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.620202,
17-03-17 16:19:36.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:36.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:37.676 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.625555,
17-03-17 16:19:41.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:41.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:43.036 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.613519,
17-03-17 16:19:46.736 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:19:46.736 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:19:46.736 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:19:46.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:46.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:46.856 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:46.886 -07 000000610 INF: LanePump: Recv /0`2130(0x03)\r\n
17-03-17 16:19:46.886 -07 000000610 INF: LanePump: Current Position of Pump is: 2130
17-03-17 16:19:46.886 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:19:47.016 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:19:47.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:48.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:48.396 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.614848,
17-03-17 16:19:48.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:48.826 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:48.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:19:49.276 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:49.306 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:49.306 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:19:49.306 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:19:49.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:49.466 -07 000000610 INF: LanePump: Recv /0`2160(0x03)\r\n
17-03-17 16:19:49.466 -07 000000610 INF: LanePump: Current Position of Pump is: 2160
17-03-17 16:19:49.596 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:19:49.636 -07 000000610 INF: LanePump: Recv /0`2160(0x03)\r\n
17-03-17 16:19:49.636 -07 000000610 INF: LanePump: Current Position of Pump is: 2160
17-03-17 16:19:49.636 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:19:49.766 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:19:49.796 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:50.226 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:19:50.256 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:19:50.256 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:19:50.256 -07 000000610 INF: ===================  ===================
17-03-17 16:19:50.256 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:19:51.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:51.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:53.756 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.606836,
17-03-17 16:19:56.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:19:56.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:19:59.116 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.625555,
17-03-17 16:20:01.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:01.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:04.476 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.616178,
17-03-17 16:20:06.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:06.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:08.266 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:20:08.266 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:20:08.266 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:20:08.386 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:08.416 -07 000000610 INF: LanePump: Recv /0`2160(0x03)\r\n
17-03-17 16:20:08.416 -07 000000610 INF: LanePump: Current Position of Pump is: 2160
17-03-17 16:20:08.416 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:20:08.546 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:20:08.586 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:09.836 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.609495,
17-03-17 16:20:09.906 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:09.936 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:10.356 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:10.386 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:10.806 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:10.836 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:10.836 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:20:10.836 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:20:10.966 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:10.996 -07 000000610 INF: LanePump: Recv /0`2190(0x03)\r\n
17-03-17 16:20:10.996 -07 000000610 INF: LanePump: Current Position of Pump is: 2190
17-03-17 16:20:11.126 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:11.156 -07 000000610 INF: LanePump: Recv /0`2190(0x03)\r\n
17-03-17 16:20:11.156 -07 000000610 INF: LanePump: Current Position of Pump is: 2190
17-03-17 16:20:11.156 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:20:11.286 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:20:11.316 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:11.746 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:11.776 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:11.776 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:20:11.776 -07 000000610 INF: ===================  ===================
17-03-17 16:20:11.776 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:20:11.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:11.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:15.196 -07 000000578 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.604142,
17-03-17 16:20:16.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:16.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:20.556 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.5693,
17-03-17 16:20:21.826 -07 000000578 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:21.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:25.916 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.578674,
17-03-17 16:20:26.826 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:26.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:29.786 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:20:29.786 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:20:29.786 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:20:29.906 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:29.936 -07 000000610 INF: LanePump: Recv /0`2190(0x03)\r\n
17-03-17 16:20:29.936 -07 000000610 INF: LanePump: Current Position of Pump is: 2190
17-03-17 16:20:29.936 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:20:30.066 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:20:30.106 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:31.276 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.5693,
17-03-17 16:20:31.426 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:31.456 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:31.826 -07 000000573 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:31.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:31.876 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:31.906 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:32.326 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:32.356 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:32.356 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:20:32.356 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:20:32.486 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:32.516 -07 000000610 INF: LanePump: Recv /0`2220(0x03)\r\n
17-03-17 16:20:32.516 -07 000000610 INF: LanePump: Current Position of Pump is: 2220
17-03-17 16:20:32.646 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:32.676 -07 000000610 INF: LanePump: Recv /0`2220(0x03)\r\n
17-03-17 16:20:32.676 -07 000000610 INF: LanePump: Current Position of Pump is: 2220
17-03-17 16:20:32.676 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:20:32.806 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:20:32.836 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:33.266 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:33.296 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:33.296 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:20:33.296 -07 000000610 INF: ===================  ===================
17-03-17 16:20:33.296 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:20:36.636 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.5693,
17-03-17 16:20:36.826 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:36.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:41.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:41.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:42.996 -07 000000573 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.593437,
17-03-17 16:20:46.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:46.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:48.356 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.576016,
17-03-17 16:20:51.306 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:20:51.306 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:20:51.306 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 16:20:51.426 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:51.456 -07 000000610 INF: LanePump: Recv /0`2220(0x03)\r\n
17-03-17 16:20:51.456 -07 000000610 INF: LanePump: Current Position of Pump is: 2220
17-03-17 16:20:51.456 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:20:51.586 -07 000000610 INF: LanePump: Xmit /1V50IP30R\r
17-03-17 16:20:51.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:51.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:51.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:52.946 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:52.976 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:53.396 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:53.426 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:20:53.726 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.558598,
17-03-17 16:20:53.846 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:53.876 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:53.876 -07 000000610 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 16:20:53.876 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:20:54.006 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:54.036 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 16:20:54.036 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 16:20:54.166 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:20:54.196 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 16:20:54.196 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 16:20:54.196 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:20:54.326 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:20:54.356 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:54.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:20:54.816 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:20:54.816 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:20:54.816 -07 000000610 INF: ===================  ===================
17-03-17 16:20:54.816 -07 000000610 INF: WaitCommand(18000) start
17-03-17 16:20:56.826 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:20:56.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:20:59.096 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.543802,
17-03-17 16:21:01.826 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:01.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:05.036 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.573322,
17-03-17 16:21:06.826 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:06.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:10.396 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.573322,
17-03-17 16:21:11.826 -07 000000631 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:11.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:12.826 -07 000000610 INF: WaitCommand(18000) end
17-03-17 16:21:12.826 -07 000000610 INF: =================== Flow Cell Temp 50° ===================
17-03-17 16:21:12.826 -07 000000610 INF: =================== Flow Cell Temp 50°, FC temperature to 50° ===================
17-03-17 16:21:12.826 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 50000000\n [FlowCellTempControl]
17-03-17 16:21:12.826 -07 000000448 INF: FPGA: Recv TEC2TEMP 
17-03-17 16:21:12.836 -07 000000610 INF: FPGA: 'TEC2TEMP 0 50000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 16:21:12.836 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 16:21:12.836 -07 000000631 INF: FPGA: Recv TEC2EN 
17-03-17 16:21:12.846 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 16:21:12.846 -07 000000610 INF: =================== Flow Cell Temp 50° ===================
17-03-17 16:21:12.846 -07 000000610 INF: WaitCommand(30000) start
17-03-17 16:21:16.756 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.580039,
17-03-17 16:21:16.826 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:16.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:21.826 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:21.826 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:22.116 -07 000000631 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.5693,
17-03-17 16:21:26.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:26.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:27.486 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.588049,
17-03-17 16:21:31.826 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:31.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:32.856 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.58672,
17-03-17 16:21:36.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:36.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:38.226 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.567971,
17-03-17 16:21:41.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:41.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:42.856 -07 000000610 INF: WaitCommand(30000) end
17-03-17 16:21:42.856 -07 000000610 INF: ===================  ===================
17-03-17 16:21:42.856 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:21:42.856 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:21:42.856 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:21:42.886 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:21:42.886 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 5. Moving 2 positions.
17-03-17 16:21:42.886 -07 000000610 INF: ReagentValve: Xmit +05\r
17-03-17 16:21:43.116 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:21:43.136 -07 000000610 INF: ReagentValve: Recv 01AE\r
17-03-17 16:21:43.136 -07 000000610 INF: ReagentValve: Move+ from 3 to 5 took 430 steps, expected 408. Error = 22 steps (5.4%)
17-03-17 16:21:43.186 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:21:43.206 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:21:43.206 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:21:43.306 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:21:43.306 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 200 µL, calling command Pumping to Flow Cell #1
17-03-17 16:21:43.306 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:21:43.336 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 16:21:43.336 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 16:21:43.466 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:21:43.496 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 16:21:43.496 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 16:21:43.596 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.559926,
17-03-17 16:21:46.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:46.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:47.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:21:47.696 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:21:47.696 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:21:47.826 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:21:47.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:21:48.286 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:21:48.316 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:21:48.316 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:21:48.446 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:21:48.476 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 16:21:48.476 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 16:21:48.606 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:21:48.636 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:21:48.966 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.545166,
17-03-17 16:21:51.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:51.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:55.016 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.565277,
17-03-17 16:21:56.056 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:21:56.086 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:21:56.506 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:21:56.536 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:21:56.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:21:56.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:21:56.956 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:21:56.986 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:21:57.406 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:21:57.436 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:21:57.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:21:57.886 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:21:57.886 -07 000000610 INF: LanePump: Waited 9249 ms for pump motion to complete
17-03-17 16:21:57.886 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:21:58.016 -07 000000610 INF: LanePump: Xmit /1V50IP1200R\r
17-03-17 16:21:58.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:00.386 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.549189,
17-03-17 16:22:01.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:01.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:05.746 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.578674,
17-03-17 16:22:06.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:06.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:11.126 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.577345,
17-03-17 16:22:11.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:11.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:16.486 -07 000000631 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.561255,
17-03-17 16:22:16.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:16.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:21.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:21.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:21.856 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.523695,
17-03-17 16:22:26.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:26.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:27.226 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.558598,
17-03-17 16:22:31.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:31.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:32.596 -07 000000631 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.543802,
17-03-17 16:22:36.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:36.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:37.966 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.573322,
17-03-17 16:22:41.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:41.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:43.336 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.566606,
17-03-17 16:22:44.476 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:44.506 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:44.926 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:44.956 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:45.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:45.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:45.826 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:45.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:46.276 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:46.306 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:46.726 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:46.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:46.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:46.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:47.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:47.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:47.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:48.206 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:22:48.206 -07 000000610 INF: LanePump: Waited 50148 ms for pump motion to complete
17-03-17 16:22:48.206 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:22:48.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:22:48.366 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:22:48.366 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:22:48.496 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:22:48.526 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:22:48.526 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:22:48.526 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:22:48.656 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:22:48.686 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:22:48.706 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.53443,
17-03-17 16:22:49.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:49.146 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:22:49.146 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:22:49.146 -07 000000610 INF: ===================  ===================
17-03-17 16:22:49.146 -07 000000610 INF: WaitCommand(3000) start
17-03-17 16:22:51.836 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:51.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:52.156 -07 000000610 INF: WaitCommand(3000) end
17-03-17 16:22:52.156 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:22:52.156 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 10 µL, calling command Pumping to Flow Cell #1
17-03-17 16:22:52.276 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:22:52.306 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:22:52.306 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:22:52.306 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:22:52.436 -07 000000610 INF: LanePump: Xmit /1V50IP60R\r
17-03-17 16:22:52.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:54.086 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.510267,
17-03-17 16:22:54.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:54.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:55.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:55.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:55.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:55.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:22:56.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:56.076 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:22:56.076 -07 000000610 INF: LanePump: Waited 3599 ms for pump motion to complete
17-03-17 16:22:56.076 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:22:56.206 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:22:56.236 -07 000000610 INF: LanePump: Recv /0`1260(0x03)\r\n
17-03-17 16:22:56.236 -07 000000610 INF: LanePump: Current Position of Pump is: 1260
17-03-17 16:22:56.366 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:22:56.396 -07 000000610 INF: LanePump: Recv /0`1260(0x03)\r\n
17-03-17 16:22:56.396 -07 000000610 INF: LanePump: Current Position of Pump is: 1260
17-03-17 16:22:56.396 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:22:56.526 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:22:56.556 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:22:56.836 -07 000000631 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:22:56.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:22:56.986 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:22:57.016 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:22:57.016 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:22:57.016 -07 000000610 INF: ===================  ===================
17-03-17 16:22:57.016 -07 000000610 INF: WaitCommand(3000) start
17-03-17 16:22:59.446 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.511596,
17-03-17 16:23:00.026 -07 000000610 INF: WaitCommand(3000) end
17-03-17 16:23:00.026 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:00.026 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 10 µL, calling command Pumping to Flow Cell #1
17-03-17 16:23:00.146 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:00.176 -07 000000610 INF: LanePump: Recv /0`1260(0x03)\r\n
17-03-17 16:23:00.176 -07 000000610 INF: LanePump: Current Position of Pump is: 1260
17-03-17 16:23:00.176 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:23:00.306 -07 000000610 INF: LanePump: Xmit /1V50IP60R\r
17-03-17 16:23:00.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:01.836 -07 000000631 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:01.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:02.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:02.596 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:03.016 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:03.046 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:03.466 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:03.496 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:03.916 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:03.946 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:03.946 -07 000000610 INF: LanePump: Waited 3599 ms for pump motion to complete
17-03-17 16:23:03.946 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:04.076 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:04.106 -07 000000610 INF: LanePump: Recv /0`1320(0x03)\r\n
17-03-17 16:23:04.106 -07 000000610 INF: LanePump: Current Position of Pump is: 1320
17-03-17 16:23:04.236 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:04.266 -07 000000610 INF: LanePump: Recv /0`1320(0x03)\r\n
17-03-17 16:23:04.266 -07 000000610 INF: LanePump: Current Position of Pump is: 1320
17-03-17 16:23:04.266 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:23:04.396 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:23:04.426 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:04.826 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.527716,
17-03-17 16:23:04.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:04.886 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:04.886 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:23:04.886 -07 000000610 INF: ===================  ===================
17-03-17 16:23:04.886 -07 000000610 INF: WaitCommand(3000) start
17-03-17 16:23:06.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:06.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:07.896 -07 000000610 INF: WaitCommand(3000) end
17-03-17 16:23:07.896 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:07.896 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 10 µL, calling command Pumping to Flow Cell #1
17-03-17 16:23:08.016 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:08.046 -07 000000610 INF: LanePump: Recv /0`1320(0x03)\r\n
17-03-17 16:23:08.046 -07 000000610 INF: LanePump: Current Position of Pump is: 1320
17-03-17 16:23:08.046 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:23:08.176 -07 000000610 INF: LanePump: Xmit /1V50IP60R\r
17-03-17 16:23:08.216 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:10.186 -07 000000631 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.543802,
17-03-17 16:23:10.436 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:10.466 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:10.886 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:10.916 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:11.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:11.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:11.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:11.816 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:11.816 -07 000000610 INF: LanePump: Waited 3599 ms for pump motion to complete
17-03-17 16:23:11.816 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:11.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:11.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:11.946 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:11.976 -07 000000610 INF: LanePump: Recv /0`1380(0x03)\r\n
17-03-17 16:23:11.976 -07 000000610 INF: LanePump: Current Position of Pump is: 1380
17-03-17 16:23:12.106 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:12.136 -07 000000610 INF: LanePump: Recv /0`1380(0x03)\r\n
17-03-17 16:23:12.136 -07 000000610 INF: LanePump: Current Position of Pump is: 1380
17-03-17 16:23:12.136 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:23:12.266 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:23:12.296 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:12.726 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:13.206 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:13.206 -07 000000610 INF: LanePump: Waited 910 ms for pump motion to complete
17-03-17 16:23:13.206 -07 000000610 INF: ===================  ===================
17-03-17 16:23:13.206 -07 000000610 INF: WaitCommand(3000) start
17-03-17 16:23:15.556 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.545166,
17-03-17 16:23:16.216 -07 000000610 INF: WaitCommand(3000) end
17-03-17 16:23:16.216 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:16.216 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 10 µL, calling command Pumping to Flow Cell #1
17-03-17 16:23:16.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:16.366 -07 000000610 INF: LanePump: Recv /0`1380(0x03)\r\n
17-03-17 16:23:16.366 -07 000000610 INF: LanePump: Current Position of Pump is: 1380
17-03-17 16:23:16.366 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:23:16.496 -07 000000610 INF: LanePump: Xmit /1V50IP60R\r
17-03-17 16:23:16.536 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:16.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:16.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:18.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:18.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:19.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:19.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:19.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:19.686 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:20.106 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:20.136 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:20.136 -07 000000610 INF: LanePump: Waited 3599 ms for pump motion to complete
17-03-17 16:23:20.136 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:20.266 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:20.296 -07 000000610 INF: LanePump: Recv /0`1440(0x03)\r\n
17-03-17 16:23:20.296 -07 000000610 INF: LanePump: Current Position of Pump is: 1440
17-03-17 16:23:20.426 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:20.456 -07 000000610 INF: LanePump: Recv /0`1440(0x03)\r\n
17-03-17 16:23:20.456 -07 000000610 INF: LanePump: Current Position of Pump is: 1440
17-03-17 16:23:20.456 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:23:20.586 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:23:20.616 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:20.926 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.537123,
17-03-17 16:23:21.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:21.076 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:21.076 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:23:21.076 -07 000000610 INF: ===================  ===================
17-03-17 16:23:21.076 -07 000000610 INF: WaitCommand(3000) start
17-03-17 16:23:21.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:21.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:24.086 -07 000000610 INF: WaitCommand(3000) end
17-03-17 16:23:24.086 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:24.086 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 10 µL, calling command Pumping to Flow Cell #1
17-03-17 16:23:24.206 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:24.236 -07 000000610 INF: LanePump: Recv /0`1440(0x03)\r\n
17-03-17 16:23:24.236 -07 000000610 INF: LanePump: Current Position of Pump is: 1440
17-03-17 16:23:24.236 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:23:24.366 -07 000000610 INF: LanePump: Xmit /1V50IP60R\r
17-03-17 16:23:24.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:26.296 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.523695,
17-03-17 16:23:26.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:26.656 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:26.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:26.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:27.076 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:27.106 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:27.526 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:27.556 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:23:27.976 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:28.006 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:28.006 -07 000000610 INF: LanePump: Waited 3599 ms for pump motion to complete
17-03-17 16:23:28.006 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:23:28.136 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:28.166 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:23:28.166 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:23:28.296 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:23:28.326 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:23:28.326 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:23:28.326 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:23:28.456 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:23:28.486 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:28.916 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:23:28.946 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:23:28.946 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:23:28.946 -07 000000610 INF: ===================  ===================
17-03-17 16:23:28.946 -07 000000610 INF: WaitCommand(3000) start
17-03-17 16:23:31.666 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.523695,
17-03-17 16:23:31.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:31.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:31.956 -07 000000610 INF: WaitCommand(3000) end
17-03-17 16:23:31.956 -07 000000610 INF: WaitCommand(90000) start
17-03-17 16:23:36.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:36.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:37.036 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.554539,
17-03-17 16:23:41.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:41.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:42.406 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.542473,
17-03-17 16:23:46.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:46.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:47.776 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.53443,
17-03-17 16:23:51.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:51.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:53.146 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.541145,
17-03-17 16:23:56.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:23:56.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:23:58.516 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.515652,
17-03-17 16:24:01.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:01.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:04.746 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.541145,
17-03-17 16:24:06.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:06.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:10.106 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.549189,
17-03-17 16:24:11.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:11.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:15.476 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.500862,
17-03-17 16:24:16.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:16.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:21.546 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.507575,
17-03-17 16:24:21.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:21.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:26.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:26.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:26.916 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.515652,
17-03-17 16:24:31.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:31.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:32.286 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.514288,
17-03-17 16:24:36.836 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:36.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:37.646 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.51296,
17-03-17 16:24:41.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:41.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:43.006 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.530409,
17-03-17 16:24:46.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:46.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:48.876 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.504918,
17-03-17 16:24:51.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:51.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:54.236 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.503554,
17-03-17 16:24:56.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:24:56.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:24:59.596 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.519673,
17-03-17 16:25:01.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:01.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:01.966 -07 000000610 INF: WaitCommand(90000) end
17-03-17 16:25:01.966 -07 000000610 INF: =================== Flow Cell Temp 50° ===================
17-03-17 16:25:01.966 -07 000000610 INF: =================== Flow Cell Temp 50°, FC temperature to 50° ===================
17-03-17 16:25:01.966 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 16:25:01.966 -07 000000486 INF: FPGA: Recv TEC2EN 
17-03-17 16:25:01.976 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 16:25:01.976 -07 000000610 INF: =================== Flow Cell Temp 50° ===================
17-03-17 16:25:01.976 -07 000000610 INF: ===================  ===================
17-03-17 16:25:01.976 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:25:01.976 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:25:01.976 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:25:02.006 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:25:02.006 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:25:02.006 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:25:02.296 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:25:02.316 -07 000000610 INF: ReagentValve: Recv 0265\r
17-03-17 16:25:02.316 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 613 steps, expected 612. Error = 1 steps (0.2%)
17-03-17 16:25:02.366 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:25:02.386 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:25:02.386 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:25:02.486 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:25:02.486 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:25:02.486 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:02.516 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 16:25:02.516 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 16:25:02.516 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:25:02.646 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:25:02.686 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:04.956 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.499534,
17-03-17 16:25:06.836 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:06.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:08.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:08.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:08.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:08.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:09.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:09.076 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:09.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:09.526 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:09.946 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:09.976 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:10.316 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.515652,
17-03-17 16:25:10.396 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:10.426 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:10.426 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:25:10.426 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:25:10.556 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:11.606 -07 000000610 INF: LanePump: Recv /0`1668(0x03)\r\n
17-03-17 16:25:11.606 -07 000000610 INF: LanePump: Current Position of Pump is: 1668
17-03-17 16:25:11.736 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:11.766 -07 000000610 INF: LanePump: Recv /0`1668(0x03)\r\n
17-03-17 16:25:11.766 -07 000000610 INF: LanePump: Current Position of Pump is: 1668
17-03-17 16:25:11.766 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:25:11.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:11.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:11.896 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:25:11.926 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:12.356 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:12.386 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:12.386 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:25:12.386 -07 000000610 INF: ===================  ===================
17-03-17 16:25:12.386 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:25:15.676 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.498169,
17-03-17 16:25:16.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:16.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:19.596 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:25:19.596 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:25:19.596 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:25:19.596 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:25:19.616 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:25:19.616 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:25:19.616 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:25:19.766 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:25:19.786 -07 000000610 INF: ReagentValve: Recv 00DD\r
17-03-17 16:25:19.786 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 221 steps, expected 204. Error = 17 steps (8.3%)
17-03-17 16:25:19.836 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:25:19.856 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:25:19.856 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:25:19.956 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:25:19.956 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:25:19.956 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:19.986 -07 000000610 INF: LanePump: Recv /0`1668(0x03)\r\n
17-03-17 16:25:19.986 -07 000000610 INF: LanePump: Current Position of Pump is: 1668
17-03-17 16:25:19.986 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:25:20.116 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:25:20.156 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:21.036 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.510267,
17-03-17 16:25:21.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:21.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:25.616 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:25.646 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:26.066 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:26.096 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:26.396 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.495477,
17-03-17 16:25:26.516 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:26.546 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:26.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:26.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:26.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:26.996 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:27.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:27.446 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:27.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:27.896 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:27.896 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:25:27.896 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:25:28.026 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:28.056 -07 000000610 INF: LanePump: Recv /0`1836(0x03)\r\n
17-03-17 16:25:28.056 -07 000000610 INF: LanePump: Current Position of Pump is: 1836
17-03-17 16:25:28.186 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:28.216 -07 000000610 INF: LanePump: Recv /0`1836(0x03)\r\n
17-03-17 16:25:28.216 -07 000000610 INF: LanePump: Current Position of Pump is: 1836
17-03-17 16:25:28.216 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:25:28.346 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:25:28.376 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:28.806 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:28.836 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:28.836 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:25:28.836 -07 000000610 INF: ===================  ===================
17-03-17 16:25:28.836 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:25:31.756 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.483417,
17-03-17 16:25:31.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:31.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:36.046 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:25:36.046 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:25:36.046 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:25:36.046 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:25:36.066 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:25:36.066 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:25:36.066 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:25:36.276 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:25:36.296 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:25:36.296 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:25:36.346 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:25:36.366 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:25:36.366 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:25:36.466 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:25:36.466 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:25:36.466 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:36.496 -07 000000610 INF: LanePump: Recv /0`1836(0x03)\r\n
17-03-17 16:25:36.496 -07 000000610 INF: LanePump: Current Position of Pump is: 1836
17-03-17 16:25:36.496 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:25:36.626 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:25:36.666 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:36.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:36.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:37.116 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.498169,
17-03-17 16:25:41.836 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:41.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:42.476 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.515652,
17-03-17 16:25:46.836 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:46.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:47.836 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.515652,
17-03-17 16:25:51.836 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:51.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:52.366 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:52.396 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:52.816 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:52.846 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:53.196 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.514288,
17-03-17 16:25:53.266 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:53.296 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:53.716 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:53.746 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:54.166 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:54.196 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:54.616 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:54.646 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:25:55.066 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:55.096 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:55.096 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:25:55.096 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:25:55.226 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:55.256 -07 000000610 INF: LanePump: Recv /0`2268(0x03)\r\n
17-03-17 16:25:55.256 -07 000000610 INF: LanePump: Current Position of Pump is: 2268
17-03-17 16:25:55.386 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:25:55.416 -07 000000610 INF: LanePump: Recv /0`2268(0x03)\r\n
17-03-17 16:25:55.416 -07 000000610 INF: LanePump: Current Position of Pump is: 2268
17-03-17 16:25:55.416 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:25:55.546 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:25:55.576 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:56.006 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:25:56.036 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:25:56.036 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:25:56.036 -07 000000610 INF: ===================  ===================
17-03-17 16:25:56.036 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:25:56.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:25:56.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:25:58.556 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.514288,
17-03-17 16:26:01.836 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:01.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:03.916 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.508903,
17-03-17 16:26:06.836 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:06.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:09.276 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.499534,
17-03-17 16:26:11.836 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:11.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:14.636 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.500862,
17-03-17 16:26:14.746 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:26:14.746 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:26:14.746 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:26:14.746 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:26:14.766 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:26:14.766 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:26:14.766 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:26:15.066 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:26:15.086 -07 000000610 INF: ReagentValve: Recv 0277\r
17-03-17 16:26:15.086 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 631 steps, expected 612. Error = 19 steps (3.1%)
17-03-17 16:26:15.136 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:26:15.156 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:26:15.156 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:26:15.256 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:26:15.256 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:26:15.256 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:15.286 -07 000000610 INF: LanePump: Recv /0`2268(0x03)\r\n
17-03-17 16:26:15.286 -07 000000610 INF: LanePump: Current Position of Pump is: 2268
17-03-17 16:26:15.286 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:26:15.416 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:26:15.456 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:16.836 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:16.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:19.996 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.483417,
17-03-17 16:26:20.916 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:20.946 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:21.366 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:21.396 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:21.816 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:21.836 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:21.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:21.846 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:22.266 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:22.296 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:22.716 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:22.746 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:23.166 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:23.196 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:23.196 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:26:23.196 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:26:23.326 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:23.356 -07 000000610 INF: LanePump: Recv /0`2436(0x03)\r\n
17-03-17 16:26:23.356 -07 000000610 INF: LanePump: Current Position of Pump is: 2436
17-03-17 16:26:23.486 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:23.516 -07 000000610 INF: LanePump: Recv /0`2436(0x03)\r\n
17-03-17 16:26:23.516 -07 000000610 INF: LanePump: Current Position of Pump is: 2436
17-03-17 16:26:23.516 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:26:23.646 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:26:23.676 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:24.106 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:24.136 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:24.136 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:26:24.136 -07 000000610 INF: ===================  ===================
17-03-17 16:26:24.136 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:26:25.356 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.483417,
17-03-17 16:26:26.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:26.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:30.716 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.500862,
17-03-17 16:26:31.346 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:26:31.346 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:26:31.346 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:26:31.346 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:26:31.366 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:26:31.366 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:26:31.366 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:26:31.516 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:26:31.536 -07 000000610 INF: ReagentValve: Recv 00DD\r
17-03-17 16:26:31.536 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 221 steps, expected 204. Error = 17 steps (8.3%)
17-03-17 16:26:31.586 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:26:31.606 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:26:31.606 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:26:31.706 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:26:31.706 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:26:31.706 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:31.746 -07 000000610 INF: LanePump: Recv /0`2436(0x03)\r\n
17-03-17 16:26:31.746 -07 000000610 INF: LanePump: Current Position of Pump is: 2436
17-03-17 16:26:31.746 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:26:31.836 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:31.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:31.876 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:26:31.916 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:36.076 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.492821,
17-03-17 16:26:36.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:36.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:37.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:37.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:37.826 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:37.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:38.276 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:38.306 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:38.726 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:38.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:39.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:39.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:39.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:39.656 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:39.656 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:26:39.656 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:26:39.786 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:39.816 -07 000000610 INF: LanePump: Recv /0`2604(0x03)\r\n
17-03-17 16:26:39.816 -07 000000610 INF: LanePump: Current Position of Pump is: 2604
17-03-17 16:26:39.946 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:39.976 -07 000000610 INF: LanePump: Recv /0`2604(0x03)\r\n
17-03-17 16:26:39.976 -07 000000610 INF: LanePump: Current Position of Pump is: 2604
17-03-17 16:26:39.976 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:26:40.106 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:26:40.136 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:40.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:40.596 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:40.596 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:26:40.596 -07 000000610 INF: ===================  ===================
17-03-17 16:26:40.596 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:26:41.436 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.490093,
17-03-17 16:26:41.836 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:41.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:46.796 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.482052,
17-03-17 16:26:47.476 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:47.476 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:47.806 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:26:47.806 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:26:47.806 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:26:47.806 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:26:47.826 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:26:47.826 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:26:47.826 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:26:48.036 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:26:48.056 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:26:48.056 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:26:48.106 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:26:48.126 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:26:48.126 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:26:48.226 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:26:48.226 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:26:48.226 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:48.256 -07 000000610 INF: LanePump: Recv /0`2604(0x03)\r\n
17-03-17 16:26:48.256 -07 000000610 INF: LanePump: Current Position of Pump is: 2604
17-03-17 16:26:48.386 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:48.416 -07 000000610 INF: LanePump: Recv /0`2604(0x03)\r\n
17-03-17 16:26:48.416 -07 000000610 INF: LanePump: Current Position of Pump is: 2604
17-03-17 16:26:51.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:51.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:52.586 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:52.616 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:52.616 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:26:52.746 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:26:52.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:52.816 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.460554,
17-03-17 16:26:53.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:26:53.236 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:26:53.236 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:26:53.366 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:26:53.396 -07 000000610 INF: LanePump: Recv /0`2604(0x03)\r\n
17-03-17 16:26:53.396 -07 000000610 INF: LanePump: Current Position of Pump is: 2604
17-03-17 16:26:53.526 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:26:53.556 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:26:56.836 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:26:56.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:26:58.176 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.495477,
17-03-17 16:27:01.836 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:01.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:02.396 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:02.426 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:02.846 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:02.876 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:03.296 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:03.326 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:03.536 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.476669,
17-03-17 16:27:03.746 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:03.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:04.196 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:04.226 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:27:04.226 -07 000000610 INF: LanePump: Waited 10669 ms for pump motion to complete
17-03-17 16:27:04.226 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:27:04.356 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:27:04.396 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:06.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:06.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:08.896 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.507575,
17-03-17 16:27:11.846 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:11.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:14.256 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.496841,
17-03-17 16:27:16.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:16.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:19.616 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.487436,
17-03-17 16:27:20.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:20.126 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:20.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:20.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:20.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:21.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:21.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:21.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:21.836 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:21.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:21.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:21.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:22.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:22.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:22.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:22.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:23.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:23.276 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:27:23.276 -07 000000610 INF: LanePump: Waited 18879 ms for pump motion to complete
17-03-17 16:27:23.276 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:27:23.406 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:27:23.436 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:27:23.436 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:27:23.566 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:27:23.596 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:27:23.596 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:27:23.596 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:27:23.726 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:27:23.756 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:27:24.186 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:24.216 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:27:24.216 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:27:24.216 -07 000000610 INF: ===================  ===================
17-03-17 16:27:24.216 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:27:24.976 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.487436,
17-03-17 16:27:26.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:26.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:30.336 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.521002,
17-03-17 16:27:31.836 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:31.836 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:35.696 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.498169,
17-03-17 16:27:36.836 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:36.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:41.056 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.486073,
17-03-17 16:27:41.836 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:41.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:42.926 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:27:42.926 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:27:42.926 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:27:42.926 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:27:42.946 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:27:42.946 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:27:42.946 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:27:43.246 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:27:43.266 -07 000000610 INF: ReagentValve: Recv 0277\r
17-03-17 16:27:43.266 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 631 steps, expected 612. Error = 19 steps (3.1%)
17-03-17 16:27:43.316 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:27:43.336 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:27:43.336 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:27:43.436 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:27:43.436 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:27:43.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:27:43.466 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:27:43.466 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:27:43.466 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:27:43.596 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:27:43.636 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:46.416 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.468593,
17-03-17 16:27:46.836 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:46.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:49.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:49.126 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:49.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:49.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:49.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:50.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:50.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:50.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:50.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:50.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:27:51.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:51.376 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:27:51.376 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:27:51.376 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:27:51.506 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:27:52.016 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:52.016 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:52.016 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.483417,
17-03-17 16:27:52.026 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:27:52.026 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:27:52.156 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:27:52.186 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:27:52.186 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:27:52.186 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:27:52.316 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:27:52.346 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:27:52.776 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:27:52.806 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:27:52.806 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:27:52.806 -07 000000610 INF: ===================  ===================
17-03-17 16:27:52.806 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:27:56.846 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:27:56.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:27:57.376 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.45919,
17-03-17 16:28:00.016 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:28:00.016 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:28:00.016 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:28:00.016 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:28:00.036 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:28:00.036 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:28:00.036 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:28:00.186 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:28:00.206 -07 000000610 INF: ReagentValve: Recv 00DD\r
17-03-17 16:28:00.206 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 221 steps, expected 204. Error = 17 steps (8.3%)
17-03-17 16:28:00.256 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:28:00.276 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:28:00.276 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:28:00.376 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:28:00.376 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:28:00.376 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:28:00.406 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:28:00.406 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:28:00.406 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:28:00.536 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:28:00.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:01.846 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:01.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:02.736 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.45248,
17-03-17 16:28:06.036 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:06.066 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:06.486 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:06.516 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:06.846 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:06.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:06.936 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:06.966 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:07.386 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:07.416 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:07.836 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:07.866 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:08.096 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.461882,
17-03-17 16:28:08.286 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:08.316 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:28:08.316 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:28:08.316 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:28:08.446 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:28:08.476 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:28:08.476 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:28:08.606 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:28:08.636 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:28:08.636 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:28:08.636 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:28:08.766 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:28:08.796 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:28:09.226 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:09.256 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:28:09.256 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:28:09.256 -07 000000610 INF: ===================  ===================
17-03-17 16:28:09.256 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:28:11.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:11.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:13.456 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.445769,
17-03-17 16:28:16.466 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:28:16.466 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:28:16.466 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:28:16.466 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:28:16.486 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:28:16.486 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:28:16.486 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:28:16.696 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:28:16.716 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:28:16.716 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:28:16.766 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:28:16.786 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:28:16.786 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:28:16.846 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:16.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:16.886 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:28:16.886 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:28:16.886 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:28:16.916 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:28:16.916 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:28:16.916 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:28:17.046 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:28:17.086 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:18.816 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.460554,
17-03-17 16:28:21.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:21.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:24.176 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.457863,
17-03-17 16:28:26.846 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:26.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:29.536 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.453807,
17-03-17 16:28:31.846 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:31.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:32.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:32.816 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:33.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:33.266 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:33.686 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:33.716 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:34.136 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:34.166 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:34.586 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:34.616 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:34.896 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.45248,
17-03-17 16:28:35.036 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:35.066 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:35.486 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:35.516 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:28:35.516 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:28:35.516 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:28:35.646 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:28:35.676 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:28:35.676 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:28:35.806 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:28:35.836 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:28:35.836 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:28:35.836 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:28:35.966 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:28:35.996 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:28:36.426 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:28:36.456 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:28:36.456 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:28:36.456 -07 000000610 INF: ===================  ===================
17-03-17 16:28:36.456 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:28:37.526 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:37.526 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:40.256 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.465938,
17-03-17 16:28:41.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:41.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:45.616 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.464574,
17-03-17 16:28:46.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:46.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:50.976 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.455171,
17-03-17 16:28:51.846 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:51.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:28:55.166 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:28:55.166 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:28:55.166 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:28:55.166 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:28:55.186 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:28:55.186 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:28:55.186 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:28:55.486 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:28:55.506 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:28:55.506 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:28:55.556 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:28:55.576 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:28:55.576 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:28:55.676 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:28:55.676 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:28:55.676 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:28:56.486 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:28:56.486 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:28:56.486 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:28:56.616 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:28:56.656 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:28:56.786 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.476669,
17-03-17 16:28:56.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:28:56.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:01.846 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:01.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:02.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:02.146 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:02.146 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.456499,
17-03-17 16:29:02.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:02.596 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:03.016 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:03.046 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:03.466 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:03.496 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:03.916 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:03.946 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:04.366 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:04.396 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:04.396 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:29:04.396 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:29:04.526 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:04.556 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:29:04.556 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:29:04.686 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:04.716 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:29:04.716 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:29:04.716 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:29:04.846 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:29:04.876 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:05.306 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:05.336 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:05.336 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:29:05.336 -07 000000610 INF: ===================  ===================
17-03-17 16:29:05.336 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:29:06.846 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:06.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:07.506 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.457863,
17-03-17 16:29:11.846 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:11.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:12.546 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:29:12.546 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:29:12.546 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:29:12.546 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:29:12.566 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:29:12.566 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:29:12.566 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:29:12.716 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:29:12.736 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:29:12.736 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:29:12.786 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:29:12.806 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:29:12.806 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:29:12.866 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.464574,
17-03-17 16:29:12.906 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:29:12.906 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:29:12.906 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:12.936 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:29:12.936 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:29:12.936 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:29:13.066 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:29:13.106 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:16.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:16.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:18.226 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.460554,
17-03-17 16:29:18.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:18.596 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:19.016 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:19.046 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:19.466 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:19.496 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:19.916 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:19.946 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:20.366 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:20.396 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:20.816 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:20.846 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:20.846 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:29:20.846 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:29:20.976 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:21.006 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:29:21.006 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:29:21.136 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:21.166 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:29:21.166 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:29:21.166 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:29:21.296 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:29:21.326 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:21.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:21.786 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:21.786 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:29:21.786 -07 000000610 INF: ===================  ===================
17-03-17 16:29:21.786 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:29:21.846 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:21.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:23.586 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.440387,
17-03-17 16:29:26.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:26.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:28.946 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.436332,
17-03-17 16:29:28.996 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:29:28.996 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:29:28.996 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:29:28.996 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:29:29.016 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:29:29.016 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:29:29.016 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:29:29.226 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:29:29.246 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:29:29.246 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:29:29.296 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:29:29.316 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:29:29.316 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:29:29.416 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:29:29.416 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:29:29.416 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:29.446 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:29:29.446 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:29:29.446 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:29:29.576 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:29:29.616 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:31.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:31.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:34.306 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.460554,
17-03-17 16:29:36.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:36.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:39.666 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.436332,
17-03-17 16:29:41.846 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:41.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:45.026 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.433641,
17-03-17 16:29:45.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:45.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:45.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:45.796 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:46.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:46.246 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:46.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:46.696 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:46.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:46.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:47.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:47.146 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:47.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:47.596 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:29:48.016 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:48.046 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:48.046 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:29:48.046 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:29:48.176 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:48.206 -07 000000610 INF: LanePump: Recv /0`1968(0x03)\r\n
17-03-17 16:29:48.206 -07 000000610 INF: LanePump: Current Position of Pump is: 1968
17-03-17 16:29:48.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:29:48.366 -07 000000610 INF: LanePump: Recv /0`1968(0x03)\r\n
17-03-17 16:29:48.366 -07 000000610 INF: LanePump: Current Position of Pump is: 1968
17-03-17 16:29:48.366 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:29:48.496 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:29:48.526 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:48.956 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:29:48.986 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:29:48.986 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:29:48.986 -07 000000610 INF: ===================  ===================
17-03-17 16:29:48.986 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:29:50.386 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.425569,
17-03-17 16:29:51.846 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:51.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:29:55.746 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.416133,
17-03-17 16:29:56.846 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:29:56.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:01.106 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.401352,
17-03-17 16:30:01.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:01.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:06.466 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.432278,
17-03-17 16:30:06.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:06.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:07.696 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:30:07.696 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:30:07.696 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:30:07.696 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:30:07.716 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:30:07.716 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:30:07.716 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:30:08.016 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:30:08.036 -07 000000610 INF: ReagentValve: Recv 0277\r
17-03-17 16:30:08.036 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 631 steps, expected 612. Error = 19 steps (3.1%)
17-03-17 16:30:08.086 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:30:08.106 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:30:08.106 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:30:08.206 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:30:08.206 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:30:08.206 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:08.236 -07 000000610 INF: LanePump: Recv /0`1968(0x03)\r\n
17-03-17 16:30:08.236 -07 000000610 INF: LanePump: Current Position of Pump is: 1968
17-03-17 16:30:08.236 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:30:08.366 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:30:08.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:11.826 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.439023,
17-03-17 16:30:11.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:11.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:13.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:13.896 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:14.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:14.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:14.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:14.796 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:15.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:15.246 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:15.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:15.696 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:16.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:16.146 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:30:16.146 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:30:16.146 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:30:16.276 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:16.306 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:30:16.306 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:30:16.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:16.466 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:30:16.466 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:30:16.466 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:30:16.596 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:30:16.626 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:30:16.846 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:16.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:17.056 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:17.086 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:30:17.086 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:30:17.086 -07 000000610 INF: ===================  ===================
17-03-17 16:30:17.086 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:30:17.186 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.460554,
17-03-17 16:30:21.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:21.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:22.546 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.45919,
17-03-17 16:30:24.296 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:30:24.296 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:30:24.296 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:30:24.296 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:30:24.316 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:30:24.316 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:30:24.316 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:30:24.466 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:30:24.486 -07 000000610 INF: ReagentValve: Recv 00DD\r
17-03-17 16:30:24.486 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 221 steps, expected 204. Error = 17 steps (8.3%)
17-03-17 16:30:24.536 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:30:24.556 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:30:24.556 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:30:24.656 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:30:24.656 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:30:24.656 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:24.686 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:30:24.686 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:30:24.686 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:30:24.816 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:30:24.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:26.846 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:26.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:27.906 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.436332,
17-03-17 16:30:30.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:30.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:30.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:30.796 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:31.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:31.246 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:31.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:31.696 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:31.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:31.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:32.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:32.146 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:32.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:32.596 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:30:32.596 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:30:32.596 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:30:32.726 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:32.756 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:30:32.756 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:30:32.886 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:32.916 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:30:32.916 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:30:32.916 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:30:33.046 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:30:33.076 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:30:33.266 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.421514,
17-03-17 16:30:33.506 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:33.536 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:30:33.536 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:30:33.536 -07 000000610 INF: ===================  ===================
17-03-17 16:30:33.536 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:30:36.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:36.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:38.626 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.421514,
17-03-17 16:30:40.746 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:30:40.746 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:30:40.746 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:30:40.746 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:30:40.766 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:30:40.766 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:30:40.766 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:30:40.976 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:30:40.996 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:30:40.996 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:30:41.046 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:30:41.066 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:30:41.066 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:30:41.166 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:30:41.166 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:30:41.166 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:41.196 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:30:41.196 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:30:41.196 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:30:41.326 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:30:41.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:41.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:41.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:44.796 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.422878,
17-03-17 16:30:46.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:46.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:50.156 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.416133,
17-03-17 16:30:51.846 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:51.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:55.516 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.404007,
17-03-17 16:30:56.846 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:30:56.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:30:57.066 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:57.096 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:57.516 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:57.546 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:57.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:57.996 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:58.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:58.446 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:58.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:58.896 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:59.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:59.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:30:59.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:30:59.796 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:30:59.796 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:30:59.796 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:30:59.926 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:30:59.956 -07 000000610 INF: LanePump: Recv /0`2736(0x03)\r\n
17-03-17 16:30:59.956 -07 000000610 INF: LanePump: Current Position of Pump is: 2736
17-03-17 16:31:00.086 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:31:00.116 -07 000000610 INF: LanePump: Recv /0`2736(0x03)\r\n
17-03-17 16:31:00.116 -07 000000610 INF: LanePump: Current Position of Pump is: 2736
17-03-17 16:31:00.116 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:31:00.246 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:31:00.276 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:00.706 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:00.736 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:00.736 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:31:00.736 -07 000000610 INF: ===================  ===================
17-03-17 16:31:00.736 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:31:01.526 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.360895,
17-03-17 16:31:01.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:01.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:06.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:06.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:06.886 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.37438,
17-03-17 16:31:11.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:11.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:12.966 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.435005,
17-03-17 16:31:16.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:16.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:18.326 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.433641,
17-03-17 16:31:19.446 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:31:19.446 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:31:19.446 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:31:19.446 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:31:19.466 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:31:19.466 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:31:19.466 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:31:19.766 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:31:19.786 -07 000000610 INF: ReagentValve: Recv 0277\r
17-03-17 16:31:19.786 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 631 steps, expected 612. Error = 19 steps (3.1%)
17-03-17 16:31:19.836 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:31:19.856 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:31:19.856 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:31:19.956 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:31:19.956 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:31:19.956 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:31:19.986 -07 000000610 INF: LanePump: Recv /0`2736(0x03)\r\n
17-03-17 16:31:19.986 -07 000000610 INF: LanePump: Current Position of Pump is: 2736
17-03-17 16:31:19.986 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:31:20.116 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:31:20.156 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:21.846 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:21.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:23.696 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.448425,
17-03-17 16:31:25.616 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:25.646 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:26.066 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:26.096 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:26.516 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:26.546 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:26.846 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:26.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:26.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:26.996 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:27.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:27.446 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:27.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:27.896 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:27.896 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:31:27.896 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:31:28.026 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:31:28.056 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:31:28.056 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:31:28.186 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:31:28.216 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:31:28.216 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:31:28.216 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:31:28.346 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:31:28.376 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:28.806 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:28.836 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:28.836 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:31:28.836 -07 000000610 INF: ===================  ===================
17-03-17 16:31:28.836 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:31:29.066 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.447097,
17-03-17 16:31:31.846 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:31.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:35.076 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.449789,
17-03-17 16:31:36.046 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:31:36.046 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:31:36.046 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:31:36.046 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:31:36.066 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:31:36.066 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:31:36.066 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:31:36.216 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:31:36.236 -07 000000610 INF: ReagentValve: Recv 00DD\r
17-03-17 16:31:36.236 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 221 steps, expected 204. Error = 17 steps (8.3%)
17-03-17 16:31:36.286 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:31:36.306 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:31:36.306 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:31:36.406 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:31:36.406 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:31:36.406 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:31:36.446 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:31:36.446 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:31:36.576 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:31:36.606 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:31:36.606 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:31:36.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:36.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:40.436 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.439023,
17-03-17 16:31:40.776 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:40.806 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:40.806 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:31:40.936 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:31:40.966 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:41.396 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:41.426 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:41.426 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:31:41.556 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:31:41.586 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:31:41.586 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:31:41.716 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:31:41.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:41.846 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:41.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:45.806 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.439023,
17-03-17 16:31:47.536 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:47.536 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:51.176 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.408061,
17-03-17 16:31:51.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:51.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:51.886 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:51.916 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:52.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:52.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:52.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:52.816 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:53.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:53.266 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:53.686 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:53.716 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:31:53.716 -07 000000610 INF: LanePump: Waited 11959 ms for pump motion to complete
17-03-17 16:31:53.716 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:31:53.846 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:31:53.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:56.546 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.412115,
17-03-17 16:31:56.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:31:56.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:31:59.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:59.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:31:59.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:31:59.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:00.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:00.276 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:00.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:00.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:01.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:01.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:01.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:01.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:01.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:01.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:01.916 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.406734,
17-03-17 16:32:02.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:02.076 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:02.076 -07 000000610 INF: LanePump: Waited 8189 ms for pump motion to complete
17-03-17 16:32:02.076 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:32:02.206 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:02.236 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:32:02.236 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:32:02.366 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:02.396 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:32:02.396 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:32:02.396 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:32:02.526 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:32:02.556 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:02.986 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:03.016 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:03.016 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:32:03.016 -07 000000610 INF: ===================  ===================
17-03-17 16:32:03.016 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:32:06.846 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:06.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:07.286 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.406734,
17-03-17 16:32:10.226 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:32:10.226 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:32:10.226 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:32:10.226 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:32:10.246 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:32:10.246 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:32:10.246 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:32:10.456 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:32:10.476 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:32:10.476 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:32:10.526 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:32:10.546 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:32:10.546 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:32:10.646 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:32:10.646 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:32:10.646 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:10.676 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:32:10.676 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:32:10.676 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:32:10.806 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:32:10.846 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:11.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:11.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:13.356 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.420187,
17-03-17 16:32:16.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:16.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:18.716 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.414805,
17-03-17 16:32:21.846 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:21.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:24.086 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.448425,
17-03-17 16:32:26.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:26.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:26.846 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:26.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:26.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:27.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:27.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:27.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:27.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:27.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:28.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:28.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:28.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:28.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:29.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:29.276 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:29.276 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:32:29.276 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:32:29.406 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:29.436 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:32:29.436 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:32:29.456 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.416133,
17-03-17 16:32:29.566 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:29.596 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:32:29.596 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:32:29.596 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:32:29.726 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:32:29.756 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:30.186 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:30.216 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:30.216 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:32:30.216 -07 000000610 INF: ===================  ===================
17-03-17 16:32:30.216 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:32:31.856 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:34.826 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.401352,
17-03-17 16:32:36.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:36.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:40.196 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.391919,
17-03-17 16:32:41.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:41.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:45.576 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.369,
17-03-17 16:32:46.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:46.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:48.926 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:32:48.926 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:32:48.926 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:32:48.926 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:32:48.946 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:32:48.946 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:32:48.946 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:32:49.246 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:32:49.266 -07 000000610 INF: ReagentValve: Recv 0277\r
17-03-17 16:32:49.266 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 631 steps, expected 612. Error = 19 steps (3.1%)
17-03-17 16:32:49.316 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:32:49.336 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:32:49.336 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:32:49.436 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:32:49.436 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:32:49.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:49.466 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:32:49.466 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:32:49.466 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:32:49.596 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:32:49.636 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:50.936 -07 000000028 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.383812,
17-03-17 16:32:51.846 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:51.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:55.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:55.126 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:55.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:55.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:55.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:56.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:56.306 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.408061,
17-03-17 16:32:56.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:56.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:56.846 -07 000000545 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:32:56.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:32:56.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:56.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:32:57.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:57.376 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:57.376 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:32:57.376 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:32:57.506 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:57.536 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:32:57.536 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:32:57.666 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:32:57.696 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:32:57.696 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:32:57.696 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:32:57.826 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:32:57.856 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:58.286 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:32:58.316 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:32:58.316 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:32:58.316 -07 000000610 INF: ===================  ===================
17-03-17 16:32:58.316 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:33:01.676 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.401352,
17-03-17 16:33:01.846 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:01.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:05.526 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:33:05.526 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:33:05.526 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:33:05.526 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:33:05.546 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:33:05.546 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:33:05.546 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:33:05.696 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:33:05.716 -07 000000610 INF: ReagentValve: Recv 00DD\r
17-03-17 16:33:05.716 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 221 steps, expected 204. Error = 17 steps (8.3%)
17-03-17 16:33:05.766 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:33:05.786 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:33:05.786 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:33:05.886 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:33:05.886 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:33:05.886 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:33:05.916 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:33:05.916 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:33:05.916 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:33:06.046 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:33:06.086 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:06.846 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:06.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:07.046 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.40268,
17-03-17 16:33:11.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:11.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:11.846 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:11.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:11.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:12.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:12.416 -07 000000026 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.360895,
17-03-17 16:33:12.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:12.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:12.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:12.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:13.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:13.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:13.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:13.826 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:33:13.826 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:33:13.826 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:33:13.956 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:33:13.986 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:33:13.986 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:33:14.116 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:33:14.146 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:33:14.146 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:33:14.146 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:33:14.276 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:33:14.306 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:33:14.736 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:14.766 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:33:14.766 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:33:14.766 -07 000000610 INF: ===================  ===================
17-03-17 16:33:14.766 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:33:16.846 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:16.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:17.786 -07 000000026 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.377069,
17-03-17 16:33:21.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:21.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:21.976 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:33:21.976 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:33:21.976 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:33:21.976 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:33:21.996 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:33:21.996 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:33:21.996 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:33:22.206 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:33:22.226 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:33:22.226 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:33:22.276 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:33:22.296 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:33:22.296 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:33:22.396 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:33:22.396 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:33:22.396 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:33:22.426 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:33:22.426 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:33:22.426 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:33:22.556 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:33:22.596 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:23.866 -07 000000026 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.37438,
17-03-17 16:33:26.856 -07 000000028 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:26.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:29.226 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.369,
17-03-17 16:33:31.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:34.596 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.348774,
17-03-17 16:33:36.846 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:36.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:38.296 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:38.326 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:38.746 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:38.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:39.196 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:39.226 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:39.646 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:39.676 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:39.966 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.341997,
17-03-17 16:33:40.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:40.126 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:40.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:40.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:33:40.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:41.026 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:33:41.026 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:33:41.026 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:33:41.156 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:33:41.186 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:33:41.186 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:33:41.316 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:33:41.346 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:33:41.346 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:33:41.346 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:33:41.476 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:33:41.506 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:33:41.846 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:41.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:41.936 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:33:41.966 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:33:41.966 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:33:41.966 -07 000000610 INF: ===================  ===================
17-03-17 16:33:41.966 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:33:45.336 -07 000000545 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.370327,
17-03-17 16:33:46.846 -07 000000582 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:46.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:50.706 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.381122,
17-03-17 16:33:51.846 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:33:56.076 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.367637,
17-03-17 16:33:56.846 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:33:56.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:00.676 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:34:00.676 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:34:00.676 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:34:00.676 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:34:00.696 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:34:00.696 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:34:00.696 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:34:00.996 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:34:01.016 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:34:01.016 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:34:01.066 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:34:01.086 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:34:01.086 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:34:01.186 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:34:01.186 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:34:01.186 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:01.216 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:34:01.216 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:34:01.216 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:34:01.346 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:34:01.386 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:01.446 -07 000000449 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.364947,
17-03-17 16:34:01.846 -07 000000026 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:01.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:06.816 -07 000000026 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.377069,
17-03-17 16:34:06.846 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:07.696 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:07.696 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:07.706 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:08.126 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:08.156 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:08.576 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:08.606 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:09.026 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:09.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:09.476 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:09.506 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:09.506 -07 000000610 INF: LanePump: Waited 8119 ms for pump motion to complete
17-03-17 16:34:09.506 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:34:09.636 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:09.666 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:34:09.666 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:34:09.796 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:09.826 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:34:09.826 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:34:09.826 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:34:09.956 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:34:09.986 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:10.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:10.446 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:10.446 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:34:10.446 -07 000000610 INF: ===================  ===================
17-03-17 16:34:10.446 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:34:11.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:11.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:13.376 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.362257,
17-03-17 16:34:16.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:16.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:17.656 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:34:17.656 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:34:17.656 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:34:17.656 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:34:17.676 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:34:17.676 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:34:17.676 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:34:17.826 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:34:17.846 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:34:17.846 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:34:17.896 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:34:17.916 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:34:17.916 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:34:18.016 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:34:18.016 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:34:18.016 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:18.046 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:34:18.046 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:34:18.046 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:34:18.176 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:34:18.216 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:18.746 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.377069,
17-03-17 16:34:21.856 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:21.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:23.676 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:23.706 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:24.126 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:24.486 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:24.786 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.404007,
17-03-17 16:34:24.906 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:24.936 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:25.356 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:25.386 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:25.806 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:25.836 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:26.256 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:26.286 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:26.286 -07 000000610 INF: LanePump: Waited 8069 ms for pump motion to complete
17-03-17 16:34:26.286 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:34:26.416 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:26.446 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:34:26.446 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:34:26.576 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:26.606 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:34:26.606 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:34:26.606 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:34:26.736 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:34:26.766 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:26.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:26.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:27.196 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:27.226 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:27.226 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:34:27.226 -07 000000610 INF: ===================  ===================
17-03-17 16:34:27.226 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:34:30.146 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.36631,
17-03-17 16:34:31.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:34.436 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:34:34.436 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:34:34.436 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:34:34.436 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:34:34.456 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:34:34.456 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:34:34.456 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:34:34.666 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:34:34.686 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:34:34.686 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:34:34.736 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:34:34.756 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:34:34.756 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:34:34.856 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:34:34.856 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:34:34.856 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:34.886 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:34:34.886 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:34:34.886 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:34:35.016 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:34:35.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:35.516 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.359532,
17-03-17 16:34:36.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:36.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:40.886 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.346049,
17-03-17 16:34:42.326 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:42.326 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:46.256 -07 000000026 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.367637,
17-03-17 16:34:46.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:46.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:50.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:50.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:51.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:51.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:51.626 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.363585,
17-03-17 16:34:51.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:51.686 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:51.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:52.106 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:52.136 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:52.556 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:52.586 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:53.006 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:53.036 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:34:53.456 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:53.486 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:53.486 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:34:53.486 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:34:53.616 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:53.646 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:34:53.646 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:34:53.776 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:34:53.806 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:34:53.806 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:34:53.806 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:34:53.936 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:34:53.966 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:54.396 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:34:54.426 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:34:54.426 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:34:54.426 -07 000000610 INF: ===================  ===================
17-03-17 16:34:54.426 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:34:56.856 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:34:56.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:34:57.006 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.354153,
17-03-17 16:35:01.856 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:01.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:03.336 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.328516,
17-03-17 16:35:06.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:06.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:08.696 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.363585,
17-03-17 16:35:11.856 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:11.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:13.136 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:35:13.136 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:35:13.136 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:35:13.136 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:35:13.156 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:35:13.156 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:35:13.156 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:35:13.456 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:35:13.476 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:35:13.476 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:35:13.526 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:35:13.546 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:35:13.546 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:35:13.646 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:35:13.646 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:35:13.646 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:35:13.676 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:35:13.676 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:35:13.676 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:35:13.806 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:35:13.846 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:14.056 -07 000000532 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.370327,
17-03-17 16:35:16.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:16.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:19.306 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:19.336 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:19.416 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.36631,
17-03-17 16:35:19.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:19.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:20.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:20.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:20.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:20.686 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:21.106 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:21.136 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:21.556 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:21.586 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:35:21.586 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:35:21.586 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:35:21.716 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:35:21.746 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:35:21.746 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:35:21.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:21.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:21.876 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:35:21.906 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:35:21.906 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:35:21.906 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:35:22.036 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:35:22.066 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:35:22.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:22.526 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:35:22.526 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:35:22.526 -07 000000610 INF: ===================  ===================
17-03-17 16:35:22.526 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:35:24.776 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.381122,
17-03-17 16:35:26.856 -07 000000449 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:26.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:29.736 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:35:29.736 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:35:29.736 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:35:29.736 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:35:29.756 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:35:29.756 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:35:29.756 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:35:29.906 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:35:29.926 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:35:29.926 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:35:29.976 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:35:29.996 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:35:29.996 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:35:30.096 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:35:30.096 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:35:30.096 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:35:30.126 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:35:30.126 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:35:30.126 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:35:30.136 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.362257,
17-03-17 16:35:30.256 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:35:30.296 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:31.856 -07 000000532 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:35.496 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.375742,
17-03-17 16:35:35.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:35.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:36.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:36.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:36.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:36.686 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:36.856 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:36.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:37.106 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:37.136 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:37.556 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:37.586 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:38.006 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:38.036 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:35:38.036 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:35:38.036 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:35:38.166 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:35:38.196 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:35:38.196 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:35:38.326 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:35:38.356 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:35:38.356 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:35:38.356 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:35:38.486 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:35:38.516 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:35:38.946 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:35:38.976 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:35:38.976 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:35:38.976 -07 000000610 INF: ===================  ===================
17-03-17 16:35:38.976 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:35:40.856 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.362257,
17-03-17 16:35:41.856 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:41.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:46.186 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:35:46.186 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:35:46.186 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:35:46.186 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:35:46.206 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:35:46.206 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:35:46.206 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:35:46.216 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.360895,
17-03-17 16:35:46.416 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:35:46.436 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:35:46.436 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:35:46.486 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:35:46.506 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:35:46.506 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:35:46.606 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:35:46.606 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:35:46.606 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:35:46.636 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:35:46.636 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:35:46.636 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:35:46.766 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:35:46.806 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:35:46.856 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:46.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:51.576 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.351463,
17-03-17 16:35:51.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:56.856 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:35:56.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:35:56.936 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.359532,
17-03-17 16:36:01.856 -07 000000582 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:01.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:02.296 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.347412,
17-03-17 16:36:02.506 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:02.536 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:02.956 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:02.986 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:03.406 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:03.436 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:03.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:03.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:04.306 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:04.336 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:04.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:04.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:05.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:05.236 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:05.236 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:36:05.236 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:36:05.366 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:05.396 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:36:05.396 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:36:05.526 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:05.556 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:36:05.556 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:36:05.556 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:36:05.686 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:36:05.716 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:06.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:06.176 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:06.176 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:36:06.176 -07 000000610 INF: ===================  ===================
17-03-17 16:36:06.176 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:36:06.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:06.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:07.656 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.378432,
17-03-17 16:36:11.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:11.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:13.016 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.389228,
17-03-17 16:36:16.856 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:16.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:18.376 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.351463,
17-03-17 16:36:21.856 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:21.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:23.736 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.363585,
17-03-17 16:36:24.886 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:36:24.886 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:36:24.886 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:36:24.886 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:36:24.906 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:36:24.906 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:36:24.906 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:36:25.206 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:36:25.226 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:36:25.226 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:36:25.276 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:36:25.296 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:36:25.296 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:36:25.396 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:36:25.396 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:36:25.396 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:25.426 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:36:25.426 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:36:25.556 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:25.586 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:36:25.586 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:36:26.856 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:26.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:29.096 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.369,
17-03-17 16:36:29.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:29.786 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:29.786 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:36:29.916 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:36:29.946 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:30.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:30.406 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:30.406 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:36:30.536 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:30.566 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:36:30.566 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:36:30.696 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:36:30.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:31.856 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:34.456 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.364947,
17-03-17 16:36:36.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:36.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:39.816 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.336618,
17-03-17 16:36:40.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:40.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:41.306 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:41.336 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:41.756 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:41.786 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:41.856 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:41.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:42.206 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:42.236 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:42.656 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:42.686 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:42.686 -07 000000610 INF: LanePump: Waited 11959 ms for pump motion to complete
17-03-17 16:36:42.686 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:36:42.816 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:36:42.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:45.176 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.34067,
17-03-17 16:36:46.856 -07 000000582 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:46.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:48.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:48.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:48.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:48.796 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:49.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:49.246 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:49.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:49.696 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:50.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:50.146 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:50.536 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.346049,
17-03-17 16:36:50.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:50.596 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:36:51.016 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:51.046 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:51.046 -07 000000610 INF: LanePump: Waited 8189 ms for pump motion to complete
17-03-17 16:36:51.046 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:36:51.176 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:51.206 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:36:51.206 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:36:51.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:51.366 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:36:51.366 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:36:51.366 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:36:51.496 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:36:51.526 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:51.856 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:51.956 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:36:51.986 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:36:51.986 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:36:51.986 -07 000000610 INF: ===================  ===================
17-03-17 16:36:51.986 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:36:55.896 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.358205,
17-03-17 16:36:56.856 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:36:56.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:36:59.196 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:36:59.196 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:36:59.196 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:36:59.196 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:36:59.216 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:36:59.216 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:36:59.216 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:36:59.366 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:36:59.386 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:36:59.386 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:36:59.436 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:36:59.456 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:36:59.456 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:36:59.556 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:36:59.556 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:36:59.556 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:36:59.586 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:36:59.586 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:36:59.586 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:36:59.716 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:36:59.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:01.256 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.33393,
17-03-17 16:37:01.856 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:01.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:05.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:05.246 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:05.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:05.696 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:06.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:06.146 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:06.566 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:06.596 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:06.616 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.381122,
17-03-17 16:37:06.856 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:06.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:07.016 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:07.046 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:07.466 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:07.496 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:37:07.496 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:37:07.496 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:37:07.626 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:37:07.656 -07 000000610 INF: LanePump: Recv /0`336(0x03)\r\n
17-03-17 16:37:07.656 -07 000000610 INF: LanePump: Current Position of Pump is: 336
17-03-17 16:37:07.786 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:37:07.816 -07 000000610 INF: LanePump: Recv /0`336(0x03)\r\n
17-03-17 16:37:07.816 -07 000000610 INF: LanePump: Current Position of Pump is: 336
17-03-17 16:37:07.816 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:37:07.946 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:37:07.976 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:37:08.406 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:08.436 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:37:08.436 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:37:08.436 -07 000000610 INF: ===================  ===================
17-03-17 16:37:08.436 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:37:11.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:11.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:11.976 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.355515,
17-03-17 16:37:15.646 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:37:15.646 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:37:15.646 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:37:15.646 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:37:15.666 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:37:15.666 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:37:15.666 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:37:15.876 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:37:15.896 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:37:15.896 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:37:15.946 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:37:15.966 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:37:15.966 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:37:16.066 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:37:16.066 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:37:16.066 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:37:16.096 -07 000000610 INF: LanePump: Recv /0`336(0x03)\r\n
17-03-17 16:37:16.096 -07 000000610 INF: LanePump: Current Position of Pump is: 336
17-03-17 16:37:16.096 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:37:16.226 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:37:16.266 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:16.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:16.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:17.336 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.320413,
17-03-17 16:37:21.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:21.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:22.696 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.339308,
17-03-17 16:37:26.856 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:26.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:28.056 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.337981,
17-03-17 16:37:31.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:31.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:31.996 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:32.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:32.446 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:32.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:32.896 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:33.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:33.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:33.416 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.375742,
17-03-17 16:37:33.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:33.796 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:34.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:34.246 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:34.666 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:34.696 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:37:34.696 -07 000000610 INF: LanePump: Waited 18428 ms for pump motion to complete
17-03-17 16:37:34.696 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:37:34.826 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:37:34.856 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:37:34.856 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:37:34.986 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:37:35.016 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:37:35.016 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:37:35.016 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:37:35.146 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:37:35.176 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:37:35.606 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:37:35.636 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:37:35.636 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:37:35.636 -07 000000610 INF: ===================  ===================
17-03-17 16:37:35.636 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:37:36.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:36.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:38.776 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.341997,
17-03-17 16:37:41.856 -07 000000469 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:41.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:44.136 -07 000000469 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.323138,
17-03-17 16:37:46.856 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:46.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:49.496 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.390555,
17-03-17 16:37:51.856 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:37:54.346 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:37:54.346 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:37:54.346 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:37:54.346 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:37:54.366 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:37:54.366 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:37:54.366 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:37:54.666 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:37:54.686 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:37:54.686 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:37:54.736 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:37:54.756 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:37:54.756 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:37:54.856 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:37:54.856 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:37:54.856 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:37:54.886 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:37:54.886 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:37:54.886 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:37:55.016 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:37:55.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:37:55.786 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.370327,
17-03-17 16:37:56.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:37:56.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:00.516 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:00.546 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:00.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:00.996 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:01.146 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.343395,
17-03-17 16:38:01.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:01.446 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:01.856 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:01.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:01.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:01.896 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:02.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:02.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:02.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:02.796 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:02.796 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:38:02.796 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:38:02.926 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:02.956 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:38:02.956 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:38:03.086 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:03.116 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:38:03.116 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:38:03.116 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:38:03.246 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:38:03.276 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:03.706 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:03.736 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:03.736 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:38:03.736 -07 000000610 INF: ===================  ===================
17-03-17 16:38:03.736 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:38:06.506 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.335256,
17-03-17 16:38:06.856 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:06.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:10.946 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:38:10.946 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:38:10.946 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:38:10.946 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:38:10.966 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:38:10.966 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:38:10.966 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:38:11.116 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:38:11.136 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:38:11.136 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:38:11.186 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:38:11.206 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:38:11.206 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:38:11.306 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:38:11.306 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:38:11.306 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:11.336 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:38:11.336 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:38:11.336 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:38:11.466 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:38:11.506 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:12.406 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:12.406 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:12.406 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.346049,
17-03-17 16:38:16.856 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:16.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:16.966 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:16.996 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:17.416 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:17.446 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:17.766 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.360895,
17-03-17 16:38:17.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:17.896 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:18.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:18.346 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:18.766 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:18.796 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:19.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:19.246 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:19.246 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:38:19.246 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:38:19.376 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:19.406 -07 000000610 INF: LanePump: Recv /0`1104(0x03)\r\n
17-03-17 16:38:19.406 -07 000000610 INF: LanePump: Current Position of Pump is: 1104
17-03-17 16:38:19.536 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:19.566 -07 000000610 INF: LanePump: Recv /0`1104(0x03)\r\n
17-03-17 16:38:19.566 -07 000000610 INF: LanePump: Current Position of Pump is: 1104
17-03-17 16:38:19.566 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:38:19.696 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:38:19.726 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:20.156 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:20.186 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:20.186 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:38:20.186 -07 000000610 INF: ===================  ===================
17-03-17 16:38:20.186 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:38:21.856 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:21.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:23.736 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.355515,
17-03-17 16:38:26.856 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:26.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:27.396 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:38:27.396 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:38:27.396 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:38:27.396 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:38:27.416 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:38:27.416 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:38:27.416 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:38:27.626 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:38:27.646 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:38:27.646 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:38:27.696 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:38:27.716 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:38:27.716 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:38:27.816 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:38:27.816 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:38:27.816 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:27.856 -07 000000610 INF: LanePump: Recv /0`1104(0x03)\r\n
17-03-17 16:38:27.856 -07 000000610 INF: LanePump: Current Position of Pump is: 1104
17-03-17 16:38:27.856 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:38:27.986 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:38:28.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:29.096 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.316362,
17-03-17 16:38:31.856 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:34.456 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.363585,
17-03-17 16:38:36.856 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:36.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:39.816 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.341997,
17-03-17 16:38:41.856 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:41.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:43.726 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:43.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:44.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:44.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:44.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:44.656 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:45.076 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:45.106 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:45.176 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.325827,
17-03-17 16:38:45.526 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:45.556 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:45.976 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:46.006 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:38:46.426 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:46.456 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:46.456 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:38:46.456 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:38:46.586 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:46.616 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:38:46.616 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:38:46.746 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:38:46.776 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:38:46.776 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:38:46.776 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:38:46.856 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:46.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:46.906 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:38:46.936 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:47.366 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:38:47.396 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:38:47.396 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:38:47.396 -07 000000610 INF: ===================  ===================
17-03-17 16:38:47.396 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:38:50.536 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.354153,
17-03-17 16:38:51.856 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:38:55.896 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.30826,
17-03-17 16:38:56.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:38:56.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:01.756 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.381122,
17-03-17 16:39:01.856 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:01.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:06.106 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:39:06.106 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:39:06.106 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:39:06.106 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:39:06.126 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:39:06.126 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:39:06.126 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:39:06.426 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:39:06.446 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:39:06.446 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:39:06.496 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:39:06.516 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:39:06.516 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:39:06.616 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:39:06.616 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:39:06.616 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:06.646 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:39:06.646 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:39:06.646 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:39:06.776 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:39:06.816 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:06.866 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:06.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:07.116 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.360895,
17-03-17 16:39:11.866 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:11.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:12.276 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:12.306 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:12.476 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.344722,
17-03-17 16:39:12.726 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:12.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:13.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:13.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:13.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:13.656 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:14.076 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:14.106 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:14.526 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:14.556 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:14.556 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:39:14.556 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:39:14.686 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:14.716 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:39:14.716 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:39:14.846 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:14.876 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:39:14.876 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:39:14.876 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:39:15.006 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:39:15.036 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:15.466 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:15.496 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:15.496 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:39:15.496 -07 000000610 INF: ===================  ===================
17-03-17 16:39:15.496 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:39:16.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:16.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:17.836 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.339308,
17-03-17 16:39:21.856 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:21.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:22.706 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:39:22.706 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:39:22.706 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:39:22.706 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:39:22.726 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:39:22.726 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:39:22.726 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:39:22.876 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:39:22.896 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:39:22.896 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:39:22.946 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:39:22.966 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:39:22.966 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:39:23.066 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:39:23.066 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:39:23.066 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:23.096 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:39:23.096 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:39:23.096 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:39:23.196 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.312311,
17-03-17 16:39:23.226 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:39:23.266 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:26.856 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:26.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:28.556 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.283957,
17-03-17 16:39:28.726 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:28.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:29.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:29.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:29.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:29.656 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:30.076 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:30.106 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:30.526 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:30.556 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:30.976 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:31.006 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:31.006 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:39:31.006 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:39:31.136 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:31.166 -07 000000610 INF: LanePump: Recv /0`1872(0x03)\r\n
17-03-17 16:39:31.166 -07 000000610 INF: LanePump: Current Position of Pump is: 1872
17-03-17 16:39:31.296 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:31.326 -07 000000610 INF: LanePump: Recv /0`1872(0x03)\r\n
17-03-17 16:39:31.326 -07 000000610 INF: LanePump: Current Position of Pump is: 1872
17-03-17 16:39:31.326 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:39:31.456 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:39:31.486 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:31.856 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:31.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:31.916 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:31.946 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:31.946 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:39:31.946 -07 000000610 INF: ===================  ===================
17-03-17 16:39:31.946 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:39:33.916 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.313673,
17-03-17 16:39:36.856 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:36.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:39.156 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:39:39.156 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:39:39.156 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:39:39.156 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:39:39.176 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:39:39.176 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:39:39.176 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:39:39.276 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.316362,
17-03-17 16:39:39.386 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:39:39.406 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:39:39.406 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:39:39.456 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:39:39.476 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:39:39.476 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:39:39.576 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:39:39.576 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:39:39.576 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:39.606 -07 000000610 INF: LanePump: Recv /0`1872(0x03)\r\n
17-03-17 16:39:39.606 -07 000000610 INF: LanePump: Current Position of Pump is: 1872
17-03-17 16:39:39.606 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:39:39.736 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:39:39.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:41.856 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:41.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:44.636 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.337981,
17-03-17 16:39:46.856 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:46.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:49.996 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.328516,
17-03-17 16:39:51.856 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:55.356 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.327189,
17-03-17 16:39:55.476 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:55.506 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:55.926 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:55.956 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:56.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:56.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:56.826 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:56.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:56.856 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:39:56.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:39:57.276 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:57.306 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:57.726 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:57.756 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:39:58.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:58.206 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:58.206 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:39:58.206 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:39:58.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:58.366 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:39:58.366 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:39:58.496 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:39:58.526 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:39:58.526 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:39:58.526 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:39:58.656 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:39:58.686 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:59.116 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:39:59.146 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:39:59.146 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:39:59.146 -07 000000610 INF: ===================  ===================
17-03-17 16:39:59.146 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:40:00.716 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.304209,
17-03-17 16:40:01.856 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:01.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:06.076 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.306933,
17-03-17 16:40:06.856 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:06.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:11.436 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.327189,
17-03-17 16:40:11.856 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:11.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:16.796 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.341997,
17-03-17 16:40:16.856 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:16.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:17.856 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:40:17.856 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:40:17.856 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:40:17.856 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:40:17.876 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:40:17.876 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:40:17.876 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:40:18.176 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:40:18.196 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:40:18.196 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:40:18.246 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:40:18.266 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:40:18.266 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:40:18.366 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:40:18.366 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:40:18.366 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:18.396 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:40:18.396 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:40:18.396 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:40:18.526 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:40:18.566 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:21.866 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:21.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:22.156 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.325827,
17-03-17 16:40:24.026 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:24.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:24.476 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:24.506 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:24.926 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:24.956 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:25.376 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:25.406 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:25.826 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:25.856 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:26.276 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:26.306 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:26.306 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:40:26.306 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:40:26.436 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:26.466 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:40:26.466 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:40:26.596 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:26.626 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:40:26.626 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:40:26.626 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:40:26.756 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:40:26.786 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:26.866 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:26.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:27.216 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:27.246 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:27.246 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:40:27.246 -07 000000610 INF: ===================  ===================
17-03-17 16:40:27.246 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:40:27.516 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.292058,
17-03-17 16:40:31.866 -07 000000582 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:31.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:32.876 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.312311,
17-03-17 16:40:34.456 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:40:34.456 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:40:34.456 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:40:34.456 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:40:34.476 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:40:34.476 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:40:34.476 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:40:34.626 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:40:34.646 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:40:34.646 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:40:34.696 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:40:34.716 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:40:34.716 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:40:34.816 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:40:34.816 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:40:34.816 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:34.856 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:40:34.856 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:40:34.856 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:40:34.986 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:40:35.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:36.866 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:36.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:38.236 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.323138,
17-03-17 16:40:40.486 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:40.516 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:40.936 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:40.966 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:41.386 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:41.416 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:41.836 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:41.866 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:41.866 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:41.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:42.286 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:42.316 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:42.736 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:42.766 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:42.766 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:40:42.766 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:40:42.896 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:42.926 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:40:42.926 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:40:43.056 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:43.086 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:40:43.086 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:40:43.086 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:40:43.216 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:40:43.246 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:43.596 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.30826,
17-03-17 16:40:43.676 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:43.706 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:43.706 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:40:43.706 -07 000000610 INF: ===================  ===================
17-03-17 16:40:43.706 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:40:46.866 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:46.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:48.956 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.288007,
17-03-17 16:40:50.916 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:40:50.916 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:40:50.916 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:40:50.916 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:40:50.936 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:40:50.936 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:40:50.936 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:40:51.146 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:40:51.166 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:40:51.166 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:40:51.216 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:40:51.236 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:40:51.236 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:40:51.336 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:40:51.336 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:40:51.336 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:51.366 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:40:51.366 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:40:51.496 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:51.526 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:40:51.526 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:40:51.866 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:51.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:54.316 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.279907,
17-03-17 16:40:55.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:55.726 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:55.726 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:40:55.856 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:40:55.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:56.316 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:40:56.346 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:40:56.346 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:40:56.476 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:40:56.506 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:40:56.506 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:40:56.636 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:40:56.666 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:40:56.866 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:40:56.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:40:59.676 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.292058,
17-03-17 16:41:01.866 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:01.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:41:05.036 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.315,
17-03-17 16:41:05.646 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:05.676 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:06.096 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:06.126 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:06.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:06.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:06.866 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:06.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:41:06.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:07.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:07.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:07.476 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:41:07.476 -07 000000610 INF: LanePump: Waited 10809 ms for pump motion to complete
17-03-17 16:41:07.476 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:41:07.606 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:41:07.646 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:10.396 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.296108,
17-03-17 16:41:11.866 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:11.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:41:15.756 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.274495,
17-03-17 16:41:16.866 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:16.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:41:21.116 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.29747,
17-03-17 16:41:21.866 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:21.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:41:23.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:23.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:23.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:23.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:24.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:24.276 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:24.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:24.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:25.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:25.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:25.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:25.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:26.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:26.076 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:26.476 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.282595,
17-03-17 16:41:26.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:26.526 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:41:26.526 -07 000000610 INF: LanePump: Waited 18879 ms for pump motion to complete
17-03-17 16:41:26.526 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:41:26.656 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:41:26.686 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:41:26.686 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:41:26.816 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:41:26.846 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:41:26.846 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:41:26.846 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:41:26.866 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:26.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=5, R2=6, Total=11. Warn if over 250 bubbles per interval.
17-03-17 16:41:26.976 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:41:27.006 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:41:27.436 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:27.466 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:41:27.466 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:41:27.466 -07 000000610 INF: ===================  ===================
17-03-17 16:41:27.466 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:41:31.836 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.312311,
17-03-17 16:41:31.866 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 16:41:31.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=6, R2=6, Total=12. Warn if over 250 bubbles per interval.
17-03-17 16:41:36.866 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:36.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=6, R2=6, Total=12. Warn if over 250 bubbles per interval.
17-03-17 16:41:37.196 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.298796,
17-03-17 16:41:41.866 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:41.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=6, R2=6, Total=12. Warn if over 250 bubbles per interval.
17-03-17 16:41:42.556 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.298796,
17-03-17 16:41:46.176 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:41:46.176 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:41:46.176 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:41:46.176 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:41:46.196 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:41:46.196 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:41:46.196 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:41:46.496 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:41:46.516 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:41:46.516 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:41:46.566 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:41:46.586 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:41:46.586 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:41:46.686 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:41:46.686 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:41:46.686 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:41:46.716 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:41:46.716 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:41:46.716 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:41:46.846 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:41:46.866 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 16:41:46.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=6, R2=7, Total=13. Warn if over 250 bubbles per interval.
17-03-17 16:41:46.886 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:47.916 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.286645,
17-03-17 16:41:51.866 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 16:41:51.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=8, Total=15. Warn if over 250 bubbles per interval.
17-03-17 16:41:52.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:52.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:52.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:52.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:53.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:53.276 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:53.276 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.315,
17-03-17 16:41:53.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:53.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:54.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:54.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:41:54.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:54.626 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:41:54.626 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:41:54.626 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:41:54.756 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:41:54.786 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:41:54.786 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:41:54.916 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:41:54.946 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:41:54.946 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:41:54.946 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:41:55.076 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:41:55.106 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:41:55.536 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:41:55.566 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:41:55.566 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:41:55.566 -07 000000610 INF: ===================  ===================
17-03-17 16:41:55.566 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:41:56.866 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:41:56.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=8, Total=15. Warn if over 250 bubbles per interval.
17-03-17 16:41:58.636 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.30826,
17-03-17 16:42:01.866 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:01.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=8, Total=15. Warn if over 250 bubbles per interval.
17-03-17 16:42:02.776 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:42:02.776 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:42:02.776 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:42:02.776 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:42:02.796 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:42:02.796 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:42:02.796 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:42:02.946 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:42:02.966 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:42:02.966 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:42:03.016 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:42:03.036 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:42:03.036 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:42:03.136 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:42:03.136 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:42:03.136 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:42:03.166 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:42:03.166 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:42:03.166 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:42:03.296 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:42:03.336 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:03.996 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.293419,
17-03-17 16:42:06.866 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 16:42:06.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:08.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:08.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:09.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:09.276 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:09.356 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.323138,
17-03-17 16:42:09.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:09.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:10.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:10.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:10.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:10.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:11.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:11.076 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:42:11.076 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:42:11.076 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:42:11.206 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:42:11.236 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:42:11.236 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:42:11.366 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:42:11.396 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:42:11.396 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:42:11.396 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:42:11.526 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:42:11.556 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:42:11.866 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:11.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:11.986 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:12.016 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:42:12.016 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:42:12.016 -07 000000610 INF: ===================  ===================
17-03-17 16:42:12.016 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:42:14.716 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.315,
17-03-17 16:42:16.866 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:16.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:19.226 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:42:19.226 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:42:19.226 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:42:19.226 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:42:19.246 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:42:19.246 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:42:19.246 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:42:19.456 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:42:19.476 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:42:19.476 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:42:19.526 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:42:19.546 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:42:19.546 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:42:19.646 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:42:19.646 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:42:19.646 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:42:19.676 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:42:19.676 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:42:19.676 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:42:19.806 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:42:19.846 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:20.076 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.319051,
17-03-17 16:42:21.866 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:21.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:25.436 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.283957,
17-03-17 16:42:26.866 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:26.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:30.796 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.286645,
17-03-17 16:42:31.866 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:31.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:35.546 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:35.576 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:35.996 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:36.026 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:36.156 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.294746,
17-03-17 16:42:36.446 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:36.476 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:36.866 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:36.866 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:36.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:36.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:37.346 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:37.376 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:37.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:37.826 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:42:38.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:38.276 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:42:38.276 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:42:38.276 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:42:38.406 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:42:38.436 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:42:38.436 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:42:38.566 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:42:38.596 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:42:38.596 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:42:38.596 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:42:38.726 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:42:38.756 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:42:39.186 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:42:39.216 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:42:39.216 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:42:39.216 -07 000000610 INF: ===================  ===================
17-03-17 16:42:39.216 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:42:41.516 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.281233,
17-03-17 16:42:41.865 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:41.865 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:46.861 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:46.861 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:46.871 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.274495,
17-03-17 16:42:51.856 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:51.856 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:52.825 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.267722,
17-03-17 16:42:56.851 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:42:56.851 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:42:57.910 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:42:57.910 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:42:57.910 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:42:57.910 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:42:57.930 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:42:57.930 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:42:57.930 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:42:58.180 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.282595,
17-03-17 16:42:58.230 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:42:58.250 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:42:58.250 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:42:58.300 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:42:58.320 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:42:58.320 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:42:58.420 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:42:58.420 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:42:58.420 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:42:58.450 -07 000000610 INF: LanePump: Recv /0`1200(0x03)\r\n
17-03-17 16:42:58.450 -07 000000610 INF: LanePump: Current Position of Pump is: 1200
17-03-17 16:42:58.450 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:42:58.580 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:42:58.620 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:01.846 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:43:01.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:43:04.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:04.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:04.484 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.290696,
17-03-17 16:43:04.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:04.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:05.053 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:05.083 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:05.503 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:05.533 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:05.953 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:05.983 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:06.402 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:06.432 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:06.432 -07 000000610 INF: LanePump: Waited 7819 ms for pump motion to complete
17-03-17 16:43:06.432 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:43:06.562 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:06.592 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:43:06.592 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:43:06.722 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:06.752 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:43:06.752 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:43:06.752 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:43:06.842 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:43:06.842 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:43:06.882 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:43:06.912 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:07.341 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:07.371 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:07.371 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:43:07.371 -07 000000610 INF: ===================  ===================
17-03-17 16:43:07.371 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:43:09.839 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.292058,
17-03-17 16:43:11.837 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:43:11.837 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:43:14.574 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:43:14.574 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:43:14.574 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:43:14.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:43:14.604 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:43:14.604 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:43:14.604 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:43:14.754 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:43:14.774 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:43:14.774 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:43:14.824 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:43:14.844 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:43:14.844 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:43:14.944 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:43:14.944 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:43:14.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:14.984 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:43:14.984 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:43:14.984 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:43:15.114 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:43:15.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:15.194 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.274495,
17-03-17 16:43:16.832 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:43:16.832 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:43:20.549 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.290696,
17-03-17 16:43:20.609 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:20.639 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:21.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:21.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:21.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:21.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:21.827 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:43:21.827 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:43:21.957 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:21.987 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:22.407 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:22.437 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:22.856 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:22.886 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:22.886 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:43:22.886 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:43:23.016 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:23.046 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:43:23.046 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:43:23.176 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:23.206 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:43:23.206 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:43:23.206 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:43:23.336 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:43:23.366 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:23.796 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:23.826 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:23.826 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:43:23.826 -07 000000610 INF: ===================  ===================
17-03-17 16:43:23.826 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:43:25.904 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.282595,
17-03-17 16:43:26.823 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:43:26.823 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=7, R2=9, Total=16. Warn if over 250 bubbles per interval.
17-03-17 16:43:31.029 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:43:31.029 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:43:31.029 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:43:31.029 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:43:31.049 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:43:31.049 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:43:31.049 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:43:31.259 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:43:31.259 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.293419,
17-03-17 16:43:31.278 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:43:31.278 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:43:31.328 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:43:32.148 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 16:43:32.148 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=8, R2=9, Total=17. Warn if over 250 bubbles per interval.
17-03-17 16:43:32.168 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:43:32.168 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:43:32.268 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:43:32.268 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:43:32.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:32.298 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:43:32.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:43:32.298 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:43:32.427 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:43:32.467 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:36.813 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 16:43:36.813 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=10, R2=10, Total=20. Warn if over 250 bubbles per interval.
17-03-17 16:43:37.483 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.275821,
17-03-17 16:43:41.808 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 16:43:41.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=11, R2=12, Total=23. Warn if over 250 bubbles per interval.
17-03-17 16:43:42.847 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.267722,
17-03-17 16:43:46.804 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 16:43:46.804 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=4, R2=3, Total=7. Bubbles this run: R1=13, R2=12, Total=25. Warn if over 250 bubbles per interval.
17-03-17 16:43:48.152 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:48.182 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:48.212 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.277219,
17-03-17 16:43:48.602 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:48.632 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:49.052 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:49.082 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:49.501 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:49.531 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:49.951 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:49.981 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:50.400 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:50.430 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:43:50.850 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:50.880 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:50.880 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:43:50.880 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:43:51.010 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:51.040 -07 000000610 INF: LanePump: Recv /0`1968(0x03)\r\n
17-03-17 16:43:51.040 -07 000000610 INF: LanePump: Current Position of Pump is: 1968
17-03-17 16:43:51.170 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:43:51.200 -07 000000610 INF: LanePump: Recv /0`1968(0x03)\r\n
17-03-17 16:43:51.200 -07 000000610 INF: LanePump: Current Position of Pump is: 1968
17-03-17 16:43:51.200 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:43:51.329 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:43:51.359 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:51.789 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:43:51.799 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 0
17-03-17 16:43:51.799 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=5, Total=5. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:43:51.819 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:43:51.819 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:43:51.819 -07 000000610 INF: ===================  ===================
17-03-17 16:43:51.819 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:43:53.577 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.285283,
17-03-17 16:43:56.794 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:43:56.794 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:43:58.942 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.254211,
17-03-17 16:44:01.789 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:01.789 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:04.307 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.278545,
17-03-17 16:44:06.785 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:06.785 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:09.662 -07 000000582 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.279907,
17-03-17 16:44:10.511 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:44:10.511 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:44:10.511 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:44:10.511 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:44:10.531 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:44:10.531 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:44:10.531 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:44:10.831 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:44:10.851 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:44:10.851 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:44:10.901 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:44:10.921 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:44:10.921 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:44:11.021 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:44:11.021 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:44:11.021 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:44:11.051 -07 000000610 INF: LanePump: Recv /0`1968(0x03)\r\n
17-03-17 16:44:11.051 -07 000000610 INF: LanePump: Current Position of Pump is: 1968
17-03-17 16:44:11.051 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:44:11.181 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:44:11.221 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:11.780 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:11.780 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:15.017 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.302847,
17-03-17 16:44:16.675 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:16.705 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:16.775 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:16.775 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:17.125 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:17.155 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:17.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:17.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:18.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:18.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:18.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:18.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:18.923 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:18.953 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:44:18.953 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:44:18.953 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:44:19.083 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:44:19.113 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:44:19.113 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:44:19.243 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:44:19.273 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:44:19.273 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:44:19.273 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:44:19.403 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:44:19.433 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:44:19.862 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:19.892 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:44:19.892 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:44:19.892 -07 000000610 INF: ===================  ===================
17-03-17 16:44:19.892 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:44:20.372 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.283957,
17-03-17 16:44:21.770 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:21.770 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:25.727 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.266396,
17-03-17 16:44:26.766 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:26.766 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:27.095 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:44:27.095 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:44:27.095 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:44:27.095 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:44:27.115 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:44:27.115 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:44:27.115 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:44:27.265 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:44:27.285 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:44:27.285 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:44:27.335 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:44:27.355 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:44:27.355 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:44:27.455 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:44:27.455 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:44:27.455 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:44:27.485 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:44:27.485 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:44:27.485 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:44:27.615 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:44:27.655 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:31.082 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.283957,
17-03-17 16:44:31.761 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:31.761 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:33.110 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:33.140 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:33.559 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:33.589 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:34.009 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:34.039 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:34.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:34.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:34.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:34.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:35.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:35.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:44:35.388 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:44:35.388 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:44:35.517 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:44:35.547 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:44:35.547 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:44:35.677 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:44:35.707 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:44:35.707 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:44:35.707 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:44:35.837 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:44:35.867 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:44:36.297 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:36.327 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:44:36.327 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:44:36.327 -07 000000610 INF: ===================  ===================
17-03-17 16:44:36.327 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:44:36.437 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.282595,
17-03-17 16:44:36.756 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:36.756 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:41.751 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:41.751 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:41.791 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.273133,
17-03-17 16:44:43.530 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:44:43.530 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:44:43.530 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:44:43.530 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:44:43.550 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:44:43.550 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:44:43.550 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:44:43.760 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:44:43.780 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:44:43.780 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:44:43.829 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:44:43.849 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:44:43.849 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:44:43.949 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:44:43.949 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:44:43.949 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:44:43.979 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:44:43.979 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:44:43.979 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:44:44.109 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:44:44.149 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:44:46.747 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:46.747 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:47.146 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.246078,
17-03-17 16:44:51.742 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:51.742 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:52.501 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.248801,
17-03-17 16:44:56.737 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:44:56.737 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:44:57.856 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.244751,
17-03-17 16:44:59.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:44:59.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:00.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:00.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:00.733 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:00.763 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:01.183 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:01.213 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:01.633 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:01.663 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:01.732 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:01.732 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:02.082 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:02.112 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:02.532 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:02.562 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:02.562 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:45:02.562 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:45:02.692 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:02.722 -07 000000610 INF: LanePump: Recv /0`2736(0x03)\r\n
17-03-17 16:45:02.722 -07 000000610 INF: LanePump: Current Position of Pump is: 2736
17-03-17 16:45:02.851 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:02.881 -07 000000610 INF: LanePump: Recv /0`2736(0x03)\r\n
17-03-17 16:45:02.881 -07 000000610 INF: LanePump: Current Position of Pump is: 2736
17-03-17 16:45:02.881 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:45:03.011 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:45:03.041 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:03.211 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.262311,
17-03-17 16:45:03.471 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:03.501 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:03.501 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:45:03.501 -07 000000610 INF: ===================  ===================
17-03-17 16:45:03.501 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:45:06.728 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:06.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:08.566 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.239341,
17-03-17 16:45:11.723 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:11.723 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:13.921 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.23257,
17-03-17 16:45:16.718 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:16.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:19.276 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.236618,
17-03-17 16:45:21.713 -07 000000454 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:21.713 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:22.193 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:45:22.193 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:45:22.193 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:45:22.193 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:45:22.213 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:45:22.213 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:45:22.213 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:45:22.513 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:45:22.533 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:45:22.533 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:45:22.583 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:45:22.603 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:45:22.603 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:45:22.703 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:45:22.703 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:45:22.703 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:22.733 -07 000000610 INF: LanePump: Recv /0`2736(0x03)\r\n
17-03-17 16:45:22.733 -07 000000610 INF: LanePump: Current Position of Pump is: 2736
17-03-17 16:45:22.733 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:45:22.862 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:45:22.902 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:24.631 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.214943,
17-03-17 16:45:26.709 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:26.709 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:28.357 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:28.387 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:28.807 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:28.837 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:29.256 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:29.286 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:29.706 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:29.736 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:29.986 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.242029,
17-03-17 16:45:30.155 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:30.185 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:30.605 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:30.635 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:30.635 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:45:30.635 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:45:30.765 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:30.795 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:45:30.795 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:45:30.925 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:30.955 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:45:30.955 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:45:30.955 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:45:31.085 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:45:31.115 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:31.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:31.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:31.574 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:45:31.574 -07 000000610 INF: ===================  ===================
17-03-17 16:45:31.574 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:45:31.704 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:31.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:35.341 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.263672,
17-03-17 16:45:36.699 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:36.699 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:38.777 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:45:38.777 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:45:38.777 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:45:38.777 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:45:38.797 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:45:38.797 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:45:38.797 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:45:38.947 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:45:38.967 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:45:38.967 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:45:39.017 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:45:39.037 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:45:39.037 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:45:39.137 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:45:39.137 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:45:39.137 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:39.167 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:45:39.167 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:45:39.297 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:39.327 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:45:39.327 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:45:40.695 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.277219,
17-03-17 16:45:41.694 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:41.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:43.493 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:43.523 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:43.523 -07 000000610 INF: LanePump: Waited 4201 ms for pump motion to complete
17-03-17 16:45:43.653 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:45:43.683 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:44.112 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:44.142 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:44.142 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:45:44.272 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:45:44.302 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:45:44.302 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:45:44.432 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:45:44.472 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:46.050 -07 000000454 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.250163,
17-03-17 16:45:46.690 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:46.690 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:51.405 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.271807,
17-03-17 16:45:51.685 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:51.685 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:54.602 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:54.632 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:55.052 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:55.082 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:55.501 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:55.531 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:55.951 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:55.981 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:56.400 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:45:56.430 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:45:56.430 -07 000000610 INF: LanePump: Waited 11969 ms for pump motion to complete
17-03-17 16:45:56.430 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:45:56.560 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:45:56.600 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:45:56.680 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:45:56.690 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:45:56.760 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.248801,
17-03-17 16:46:01.675 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:01.675 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:02.055 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:02.085 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:02.115 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.235257,
17-03-17 16:46:02.505 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:02.535 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:02.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:02.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:03.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:03.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:03.853 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:03.883 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:04.303 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:04.333 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:04.753 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:04.783 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:46:04.783 -07 000000610 INF: LanePump: Waited 8189 ms for pump motion to complete
17-03-17 16:46:04.783 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:46:04.912 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:46:04.942 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:46:04.942 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:46:05.072 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:46:05.102 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:46:05.102 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:46:05.102 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:46:05.232 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:46:05.262 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:46:05.692 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:05.722 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:46:05.722 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:46:05.722 -07 000000610 INF: ===================  ===================
17-03-17 16:46:05.722 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:46:06.671 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:06.671 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:07.470 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.248801,
17-03-17 16:46:11.666 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:11.666 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:12.825 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.214943,
17-03-17 16:46:12.925 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:46:12.925 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:46:12.925 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:46:12.925 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:46:12.945 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:46:12.945 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:46:12.945 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:46:13.155 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:46:13.175 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:46:13.175 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:46:13.224 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:46:13.244 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:46:13.244 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:46:13.344 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:46:13.344 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:46:13.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:46:13.374 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:46:13.374 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:46:13.374 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:46:13.504 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:46:13.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:16.661 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:16.671 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:18.180 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.223111,
17-03-17 16:46:21.656 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:21.666 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:23.535 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.254211,
17-03-17 16:46:26.652 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:26.662 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:28.890 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.255573,
17-03-17 16:46:29.229 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:29.259 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:29.679 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:29.709 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:30.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:30.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:30.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:30.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:31.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:31.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:31.477 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:31.507 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:31.647 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:31.657 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:31.927 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:31.957 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:46:31.957 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:46:31.957 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:46:32.087 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:46:32.117 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:46:32.117 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:46:32.246 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:46:32.276 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:46:32.276 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:46:32.276 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:46:32.406 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:46:32.436 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:46:32.866 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:32.896 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:46:32.896 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:46:32.896 -07 000000610 INF: ===================  ===================
17-03-17 16:46:32.896 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:46:34.245 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.256899,
17-03-17 16:46:36.642 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:36.652 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:39.599 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.251488,
17-03-17 16:46:41.647 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:41.647 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:44.954 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.236618,
17-03-17 16:46:46.643 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:46.643 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:50.309 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.214943,
17-03-17 16:46:51.588 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:46:51.588 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:46:51.588 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:46:51.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:46:51.608 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:46:51.608 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:46:51.608 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:46:51.638 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:51.908 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:46:51.928 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:46:51.928 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:46:51.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:46:51.998 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:46:51.998 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:46:52.098 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:46:52.098 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:46:52.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:46:52.127 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 16:46:52.127 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 16:46:52.127 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:46:52.257 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:46:52.297 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:55.664 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.233931,
17-03-17 16:46:56.633 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:46:56.633 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:46:57.752 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:57.782 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:58.202 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:58.232 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:58.651 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:58.681 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:59.101 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:59.131 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:46:59.550 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:46:59.580 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:00.000 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:00.030 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:00.030 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:47:00.030 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:47:00.160 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:00.190 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:47:00.190 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:47:00.320 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:00.350 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:47:00.350 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:47:00.350 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:47:00.480 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:47:00.510 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:00.939 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:00.969 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:00.969 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:47:00.969 -07 000000610 INF: ===================  ===================
17-03-17 16:47:00.969 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:47:01.019 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.251488,
17-03-17 16:47:01.628 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:01.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:06.624 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:06.754 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.23798,
17-03-17 16:47:08.172 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:47:08.172 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:47:08.172 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:47:08.172 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:47:08.192 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:47:08.192 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:47:08.192 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:47:08.342 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:47:08.362 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:47:08.362 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:47:08.412 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:47:08.432 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:47:08.432 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:47:08.532 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:47:08.532 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:47:08.532 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:08.562 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:47:08.562 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:47:08.562 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:47:08.692 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:47:08.732 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:11.619 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:11.619 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:12.108 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.251488,
17-03-17 16:47:14.187 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:14.216 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:14.636 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:14.666 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:15.086 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:15.116 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:15.535 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:15.565 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:15.985 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:16.015 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:16.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:16.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:16.464 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:47:16.464 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:47:16.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:16.614 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:16.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:16.624 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:47:16.624 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:47:16.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:16.784 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:47:16.784 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:47:16.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:47:16.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:47:16.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:17.373 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:17.403 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:17.403 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:47:17.403 -07 000000610 INF: ===================  ===================
17-03-17 16:47:17.403 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:47:17.463 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.256899,
17-03-17 16:47:21.609 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:21.609 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:22.818 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.262311,
17-03-17 16:47:24.607 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:47:24.607 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:47:24.607 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:47:24.607 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:47:24.627 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:47:24.627 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:47:24.627 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:47:24.836 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:47:24.856 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:47:24.856 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:47:24.906 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:47:24.926 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:47:24.926 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:47:25.026 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:47:25.026 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:47:25.026 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:25.056 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:47:25.056 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:47:25.056 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:47:25.186 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:47:25.226 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:26.605 -07 000000032 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:26.605 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:28.173 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.210895,
17-03-17 16:47:31.600 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:31.600 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:33.528 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.244751,
17-03-17 16:47:36.595 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:36.595 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:38.883 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.254211,
17-03-17 16:47:40.911 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:40.941 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:41.361 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:41.391 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:41.591 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:41.591 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:41.811 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:41.841 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:42.260 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:42.290 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:42.710 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:42.740 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:43.160 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:43.190 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:47:43.610 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:43.640 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:43.640 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:47:43.640 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:47:43.770 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:43.800 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:47:43.800 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:47:43.930 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:47:43.960 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:47:43.960 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:47:43.960 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:47:44.090 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:47:44.120 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:44.240 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.246078,
17-03-17 16:47:44.550 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:47:44.580 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:47:44.580 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:47:44.580 -07 000000610 INF: ===================  ===================
17-03-17 16:47:44.580 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:47:46.589 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:46.589 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:49.598 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.217666,
17-03-17 16:47:51.587 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:51.587 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:47:54.956 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.231208,
17-03-17 16:47:56.586 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:47:56.586 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:00.314 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.233931,
17-03-17 16:48:01.584 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:01.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:03.283 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:48:03.283 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:48:03.283 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:48:03.283 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:48:03.303 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:48:03.303 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:48:03.303 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:48:03.603 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:48:03.623 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:48:03.623 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:48:03.673 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:48:03.693 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:48:03.693 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:48:03.793 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:48:03.793 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:48:03.793 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:03.823 -07 000000610 INF: LanePump: Recv /0`1368(0x03)\r\n
17-03-17 16:48:03.823 -07 000000610 INF: LanePump: Current Position of Pump is: 1368
17-03-17 16:48:03.823 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:48:03.953 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:48:03.993 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:06.442 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.23798,
17-03-17 16:48:06.582 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:06.582 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:09.451 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:09.481 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:09.901 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:09.931 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:10.351 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:10.381 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:10.801 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:10.831 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:11.251 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:11.281 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:11.580 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:11.580 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:11.700 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:11.730 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:11.730 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:48:11.730 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:48:11.810 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.225798,
17-03-17 16:48:11.860 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:11.890 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:48:11.890 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:48:12.020 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:12.050 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:48:12.050 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:48:12.050 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:48:12.180 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:48:12.210 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:12.640 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:12.670 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:12.670 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:48:12.670 -07 000000610 INF: ===================  ===================
17-03-17 16:48:12.670 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:48:16.579 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:16.579 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:18.018 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.204124,
17-03-17 16:48:19.878 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:48:19.878 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:48:19.878 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:48:19.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:48:19.898 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:48:19.898 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:48:19.898 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:48:20.048 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:48:20.068 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:48:20.068 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:48:20.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:48:20.138 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:48:20.138 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:48:20.238 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:48:20.238 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:48:20.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:20.267 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:48:20.267 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:48:20.267 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:48:20.397 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:48:20.437 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:21.577 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:21.577 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:23.396 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.224437,
17-03-17 16:48:25.896 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:25.926 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:26.345 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:26.375 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:26.575 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:26.575 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:26.795 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:26.825 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:27.245 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:27.275 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:27.695 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:27.725 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:28.145 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:28.175 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:28.175 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:48:28.175 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:48:28.305 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:28.335 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:48:28.335 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:48:28.465 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:28.495 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:48:28.495 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:48:28.495 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:48:28.625 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:48:29.254 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.221714,
17-03-17 16:48:29.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:29.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:29.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:29.724 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:48:29.724 -07 000000610 INF: ===================  ===================
17-03-17 16:48:29.724 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:48:31.574 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:31.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:34.613 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.233931,
17-03-17 16:48:36.572 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:36.572 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:36.932 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:48:36.932 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:48:36.932 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:48:36.932 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:48:36.952 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:48:36.952 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:48:36.952 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:48:37.162 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:48:37.182 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:48:37.182 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:48:37.232 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:48:37.252 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:48:37.252 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:48:37.352 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:48:37.352 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:48:37.352 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:37.382 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:48:37.382 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:48:37.382 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:48:37.512 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:48:37.552 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:39.971 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.228521,
17-03-17 16:48:41.570 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:41.570 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:46.209 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.228521,
17-03-17 16:48:46.569 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:46.569 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:51.567 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.209534,
17-03-17 16:48:51.567 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:51.567 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:53.246 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:53.276 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:53.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:53.726 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:54.146 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:54.176 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:54.596 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:54.626 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:55.046 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:55.076 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:55.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:55.525 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:48:55.945 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:55.975 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:55.975 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:48:55.975 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:48:56.105 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:56.135 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:48:56.135 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:48:56.265 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:48:56.295 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:48:56.295 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:48:56.295 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:48:56.425 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:48:56.455 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:56.565 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:48:56.565 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:48:56.885 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:48:56.915 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:48:56.915 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:48:56.915 -07 000000610 INF: ===================  ===================
17-03-17 16:48:56.915 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:48:56.925 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.178371,
17-03-17 16:49:01.563 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:01.563 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:02.283 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.194632,
17-03-17 16:49:06.562 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:06.562 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:07.641 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.205486,
17-03-17 16:49:11.560 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:11.560 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:13.000 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.186502,
17-03-17 16:49:15.619 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:49:15.619 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:49:15.619 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:49:15.619 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:49:15.639 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:49:15.639 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:49:15.639 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:49:15.939 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:49:15.959 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:49:15.959 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:49:16.009 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:49:16.029 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:49:16.029 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:49:16.128 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:49:16.128 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:49:16.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:49:16.158 -07 000000610 INF: LanePump: Recv /0`2136(0x03)\r\n
17-03-17 16:49:16.158 -07 000000610 INF: LanePump: Current Position of Pump is: 2136
17-03-17 16:49:16.158 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:49:16.288 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:49:16.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:16.558 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:16.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:18.358 -07 000000032 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.185176,
17-03-17 16:49:21.557 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:21.557 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:21.787 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:21.817 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:22.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:22.266 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:22.686 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:22.716 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:23.136 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:23.166 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:23.586 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:23.616 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:23.716 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.183815,
17-03-17 16:49:24.036 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:24.066 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:49:24.066 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:49:24.066 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:49:24.196 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:49:24.226 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:49:24.226 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:49:24.356 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:49:24.386 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:49:24.386 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:49:24.386 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:49:24.516 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:49:24.546 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:49:24.975 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:25.005 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:49:25.005 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:49:25.005 -07 000000610 INF: ===================  ===================
17-03-17 16:49:25.005 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:49:26.555 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:26.555 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:29.074 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.204124,
17-03-17 16:49:31.553 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:31.553 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:32.213 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:49:32.213 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:49:32.213 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:49:32.213 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:49:32.233 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:49:32.233 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:49:32.233 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:49:32.383 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:49:32.403 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:49:32.403 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:49:32.453 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:49:32.473 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:49:32.473 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:49:32.573 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:49:32.573 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:49:32.573 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:49:32.603 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:49:32.603 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:49:32.603 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:49:32.733 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:49:32.773 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:34.432 -07 000000465 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.206847,
17-03-17 16:49:36.552 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:36.552 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:38.231 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:38.261 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:38.681 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:38.711 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:39.131 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:39.161 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:39.581 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:39.611 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:39.790 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.239341,
17-03-17 16:49:40.030 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:40.060 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:40.480 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:40.510 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:49:40.510 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:49:40.510 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:49:40.640 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:49:40.670 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:49:40.670 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:49:40.800 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:49:40.830 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:49:40.830 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:49:40.830 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:49:40.960 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:49:40.990 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:49:41.420 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:49:41.450 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:49:41.450 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:49:41.450 -07 000000610 INF: ===================  ===================
17-03-17 16:49:41.450 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:49:41.550 -07 000000465 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:41.550 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:45.149 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.235257,
17-03-17 16:49:46.548 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:46.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:48.657 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:49:48.657 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:49:48.657 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:49:48.657 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:49:48.677 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:49:48.677 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:49:48.677 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:49:48.887 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:49:48.907 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:49:48.907 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:49:48.957 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:49:48.977 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:49:48.977 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:49:49.077 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:49:49.077 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:49:49.077 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:49:49.107 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:49:49.107 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:49:49.107 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:49:49.237 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:49:49.277 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:49:50.507 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.175685,
17-03-17 16:49:51.546 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:51.546 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:49:55.865 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.200077,
17-03-17 16:49:56.545 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:49:56.545 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:01.223 -07 000000596 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.182455,
17-03-17 16:50:01.543 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:01.543 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:04.972 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:05.002 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:05.422 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:05.452 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:05.872 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:05.902 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:06.321 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:06.351 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:06.541 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:06.541 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:06.581 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.213617,
17-03-17 16:50:06.771 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:06.801 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:07.221 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:07.251 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:07.671 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:07.701 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:07.701 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:50:07.701 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:50:07.831 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:50:07.861 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:50:07.861 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:50:07.991 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:50:08.021 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:50:08.021 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:50:08.021 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:50:08.151 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:50:08.181 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:08.611 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:08.641 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:08.641 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:50:08.641 -07 000000610 INF: ===================  ===================
17-03-17 16:50:08.641 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:50:11.540 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:11.540 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:11.940 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.206847,
17-03-17 16:50:16.538 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:16.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:17.298 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.196029,
17-03-17 16:50:21.536 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:21.536 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:22.656 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.23798,
17-03-17 16:50:26.535 -07 000000596 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:26.535 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:27.344 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:50:27.344 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:50:27.344 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:50:27.344 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:50:27.364 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:50:27.364 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:50:27.364 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:50:27.664 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:50:27.684 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:50:27.684 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:50:27.734 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:50:27.754 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:50:27.754 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:50:27.854 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:50:27.854 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:50:27.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:50:27.884 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:50:27.884 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:50:28.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:50:28.014 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.23798,
17-03-17 16:50:28.044 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:50:28.044 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:50:31.533 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:31.533 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:32.213 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:32.243 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:32.243 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:50:32.373 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:50:32.403 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:32.832 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:32.862 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:32.862 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:50:32.992 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:50:33.022 -07 000000610 INF: LanePump: Recv /0`2904(0x03)\r\n
17-03-17 16:50:33.022 -07 000000610 INF: LanePump: Current Position of Pump is: 2904
17-03-17 16:50:33.152 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:50:33.192 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:33.372 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.247439,
17-03-17 16:50:36.531 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:36.531 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:38.730 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.233931,
17-03-17 16:50:41.529 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:41.529 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:43.319 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:43.349 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:43.769 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:43.799 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:44.089 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.214943,
17-03-17 16:50:44.219 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:44.249 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:44.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:44.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:45.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:45.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:45.148 -07 000000610 INF: LanePump: Waited 11959 ms for pump motion to complete
17-03-17 16:50:45.148 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:50:45.278 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:50:45.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:46.528 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:49.447 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.231208,
17-03-17 16:50:50.776 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:50.806 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:51.226 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:51.256 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:51.526 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:51.526 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:50:51.676 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:51.706 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:52.126 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:52.156 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:52.576 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:52.606 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:53.026 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:53.056 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:50:53.475 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:53.505 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:53.505 -07 000000610 INF: LanePump: Waited 8189 ms for pump motion to complete
17-03-17 16:50:53.505 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:50:53.635 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:50:53.665 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:50:53.665 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:50:53.795 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:50:53.825 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:50:53.825 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:50:53.825 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:50:53.955 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:50:53.985 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:54.415 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:50:54.445 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:50:54.445 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:50:54.445 -07 000000610 INF: ===================  ===================
17-03-17 16:50:54.445 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:50:54.805 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.209534,
17-03-17 16:50:56.524 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:50:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:00.163 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.221714,
17-03-17 16:51:01.523 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:01.523 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:01.653 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:51:01.653 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:51:01.653 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:51:01.653 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:51:01.673 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:51:01.673 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:51:01.673 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:51:01.823 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:51:01.843 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:51:01.843 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:51:01.893 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:51:01.913 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:51:01.913 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:51:02.012 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:51:02.012 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:51:02.012 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:51:02.042 -07 000000610 INF: LanePump: Recv /0`168(0x03)\r\n
17-03-17 16:51:02.042 -07 000000610 INF: LanePump: Current Position of Pump is: 168
17-03-17 16:51:02.042 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:51:02.172 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:51:02.212 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:05.521 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.221714,
17-03-17 16:51:06.521 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:06.521 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:07.671 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:07.701 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:08.120 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:08.150 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:08.570 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:08.600 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:09.020 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:09.050 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:09.470 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:09.500 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:09.920 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:09.950 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:51:09.950 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:51:09.950 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:51:10.080 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:51:10.110 -07 000000610 INF: LanePump: Recv /0`336(0x03)\r\n
17-03-17 16:51:10.110 -07 000000610 INF: LanePump: Current Position of Pump is: 336
17-03-17 16:51:10.240 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:51:10.270 -07 000000610 INF: LanePump: Recv /0`336(0x03)\r\n
17-03-17 16:51:10.270 -07 000000610 INF: LanePump: Current Position of Pump is: 336
17-03-17 16:51:10.270 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:51:10.400 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:51:10.430 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:51:10.859 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:10.879 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.209534,
17-03-17 16:51:10.889 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:51:10.889 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:51:10.889 -07 000000610 INF: ===================  ===================
17-03-17 16:51:10.889 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:51:11.519 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:11.519 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:16.238 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.219027,
17-03-17 16:51:16.518 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:16.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:18.097 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:51:18.097 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:51:18.097 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:51:18.097 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:51:18.117 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:51:18.117 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:51:18.117 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:51:18.327 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:51:18.347 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:51:18.347 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:51:18.397 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:51:18.417 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:51:18.417 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:51:18.517 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:51:18.517 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:51:18.517 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:51:18.547 -07 000000610 INF: LanePump: Recv /0`336(0x03)\r\n
17-03-17 16:51:18.547 -07 000000610 INF: LanePump: Current Position of Pump is: 336
17-03-17 16:51:18.547 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:51:18.677 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:51:18.717 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:21.516 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:21.516 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:21.596 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.23257,
17-03-17 16:51:26.514 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:26.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:27.954 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.224437,
17-03-17 16:51:31.512 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:31.512 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:33.312 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.202764,
17-03-17 16:51:34.411 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:34.441 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:34.861 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:34.891 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:35.311 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:35.341 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:35.761 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:35.791 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:36.211 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:36.241 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:36.511 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:36.511 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:36.661 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:36.691 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:51:37.111 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:37.141 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:51:37.141 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:51:37.141 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:51:37.270 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:51:37.300 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:51:37.300 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:51:37.430 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:51:37.460 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:51:37.460 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:51:37.460 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:51:37.590 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:51:37.620 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:51:38.050 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:51:38.080 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:51:38.080 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:51:38.080 -07 000000610 INF: ===================  ===================
17-03-17 16:51:38.080 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:51:38.670 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.197354,
17-03-17 16:51:41.509 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:41.509 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:44.028 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.190585,
17-03-17 16:51:46.507 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:46.507 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:49.386 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.172964,
17-03-17 16:51:51.506 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:51.506 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:54.745 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.159391,
17-03-17 16:51:56.504 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:51:56.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:51:56.784 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:51:56.784 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:51:56.784 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:51:56.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:51:56.804 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:51:56.804 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:51:56.804 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:51:57.104 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:51:57.124 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:51:57.124 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:51:57.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:51:57.194 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:51:57.194 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:51:57.294 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:51:57.294 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:51:57.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:51:57.324 -07 000000610 INF: LanePump: Recv /0`768(0x03)\r\n
17-03-17 16:51:57.324 -07 000000610 INF: LanePump: Current Position of Pump is: 768
17-03-17 16:51:57.324 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:51:57.454 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:51:57.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:00.103 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.16752,
17-03-17 16:52:01.502 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:01.502 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:02.952 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:02.982 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:03.402 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:03.432 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:03.851 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:03.881 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:04.301 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:04.331 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:04.751 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:04.781 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:05.201 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:05.231 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:05.231 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:52:05.231 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:52:05.361 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:05.391 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:52:05.391 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:52:05.461 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.202764,
17-03-17 16:52:05.521 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:05.551 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:52:05.551 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:52:05.551 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:52:05.681 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:52:05.711 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:06.141 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:06.171 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:06.171 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:52:06.171 -07 000000610 INF: ===================  ===================
17-03-17 16:52:06.171 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:52:06.501 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:06.501 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:10.819 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.213617,
17-03-17 16:52:11.499 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:11.499 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:13.378 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:52:13.378 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:52:13.378 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:52:13.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:52:13.398 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:52:13.398 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:52:13.398 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:52:13.548 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:52:13.568 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:52:13.568 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:52:13.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:52:13.638 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:52:13.638 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:52:13.738 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:52:13.738 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:52:13.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:13.768 -07 000000610 INF: LanePump: Recv /0`936(0x03)\r\n
17-03-17 16:52:13.768 -07 000000610 INF: LanePump: Current Position of Pump is: 936
17-03-17 16:52:13.768 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:52:13.898 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:52:13.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:16.177 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.187863,
17-03-17 16:52:16.497 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:16.497 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:19.396 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:19.426 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:19.846 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:19.876 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:20.296 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:20.326 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:20.746 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:20.776 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:21.196 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:21.226 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:21.495 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:21.495 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:21.535 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.224437,
17-03-17 16:52:21.645 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:21.675 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:21.675 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:52:21.675 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:52:21.805 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:21.835 -07 000000610 INF: LanePump: Recv /0`1104(0x03)\r\n
17-03-17 16:52:21.835 -07 000000610 INF: LanePump: Current Position of Pump is: 1104
17-03-17 16:52:21.965 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:21.995 -07 000000610 INF: LanePump: Recv /0`1104(0x03)\r\n
17-03-17 16:52:21.995 -07 000000610 INF: LanePump: Current Position of Pump is: 1104
17-03-17 16:52:21.995 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:52:22.125 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:52:22.155 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:22.585 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:22.615 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:22.615 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:52:22.615 -07 000000610 INF: ===================  ===================
17-03-17 16:52:22.615 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:52:26.494 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:26.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:26.894 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.217666,
17-03-17 16:52:29.823 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:52:29.823 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:52:29.823 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:52:29.823 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:52:29.843 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:52:29.843 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:52:29.843 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:52:30.053 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:52:30.073 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:52:30.073 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:52:30.123 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:52:30.143 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:52:30.143 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:52:30.242 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:52:30.242 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:52:30.242 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:30.272 -07 000000610 INF: LanePump: Recv /0`1104(0x03)\r\n
17-03-17 16:52:30.272 -07 000000610 INF: LanePump: Current Position of Pump is: 1104
17-03-17 16:52:30.272 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:52:30.402 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:52:30.442 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:31.492 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:31.502 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:32.252 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.190585,
17-03-17 16:52:36.490 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:36.500 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:37.610 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.219027,
17-03-17 16:52:41.489 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:41.499 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:42.969 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.212256,
17-03-17 16:52:46.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:46.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:46.488 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:46.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:46.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:46.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:47.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:47.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:47.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:47.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:47.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:47.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:48.328 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.181094,
17-03-17 16:52:48.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:48.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:52:48.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:48.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:48.868 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:52:48.868 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:52:48.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:49.028 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:52:49.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:52:49.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:52:49.188 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:52:49.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:52:49.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:52:49.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:52:49.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:49.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:52:49.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:52:49.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:52:49.808 -07 000000610 INF: ===================  ===================
17-03-17 16:52:49.808 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:52:51.498 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:53.687 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.191946,
17-03-17 16:52:56.497 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:52:56.497 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:52:59.047 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.185176,
17-03-17 16:53:01.496 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:01.496 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:05.026 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.172964,
17-03-17 16:53:06.496 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:06.496 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:08.515 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:53:08.515 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:53:08.515 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:53:08.515 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:53:08.535 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:53:08.535 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:53:08.535 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:53:08.835 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:53:08.855 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:53:08.855 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:53:08.905 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:53:08.925 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:53:08.925 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:53:09.025 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:53:09.025 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:53:09.025 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:53:09.065 -07 000000610 INF: LanePump: Recv /0`1536(0x03)\r\n
17-03-17 16:53:09.065 -07 000000610 INF: LanePump: Current Position of Pump is: 1536
17-03-17 16:53:09.065 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:53:09.195 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:53:09.235 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:10.385 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.201438,
17-03-17 16:53:11.495 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:11.495 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:14.695 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:14.725 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:15.145 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:15.175 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:15.595 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:15.625 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:15.745 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.205486,
17-03-17 16:53:16.045 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:16.075 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:16.495 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:16.495 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:16.495 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:16.525 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:16.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:16.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:53:16.974 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:53:16.974 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:53:17.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:53:17.134 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:53:17.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:53:17.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:53:17.294 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:53:17.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:53:17.294 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:53:17.424 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:53:17.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:53:17.884 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:17.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:53:17.914 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:53:17.914 -07 000000610 INF: ===================  ===================
17-03-17 16:53:17.914 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:53:21.104 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.196029,
17-03-17 16:53:21.494 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:21.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:25.123 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:53:25.123 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:53:25.123 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:53:25.123 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:53:25.143 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:53:25.143 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:53:25.143 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:53:25.293 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:53:25.313 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:53:25.313 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:53:25.363 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:53:25.383 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:53:25.383 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:53:25.483 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:53:25.483 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:53:25.483 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:53:25.513 -07 000000610 INF: LanePump: Recv /0`1704(0x03)\r\n
17-03-17 16:53:25.513 -07 000000610 INF: LanePump: Current Position of Pump is: 1704
17-03-17 16:53:25.513 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:53:25.643 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:53:25.683 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:26.463 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.163474,
17-03-17 16:53:26.493 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:26.493 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:31.143 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:31.173 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:31.493 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:31.493 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:31.593 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:31.623 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:31.823 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.155345,
17-03-17 16:53:32.043 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:32.073 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:32.493 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:32.523 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:32.943 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:32.973 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:33.392 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:33.422 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:53:33.422 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:53:33.422 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:53:33.552 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:53:33.582 -07 000000610 INF: LanePump: Recv /0`1872(0x03)\r\n
17-03-17 16:53:33.582 -07 000000610 INF: LanePump: Current Position of Pump is: 1872
17-03-17 16:53:33.712 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:53:33.742 -07 000000610 INF: LanePump: Recv /0`1872(0x03)\r\n
17-03-17 16:53:33.742 -07 000000610 INF: LanePump: Current Position of Pump is: 1872
17-03-17 16:53:33.742 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:53:33.872 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:53:33.902 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:53:34.332 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:34.362 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:53:34.362 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:53:34.362 -07 000000610 INF: ===================  ===================
17-03-17 16:53:34.362 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:53:36.492 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:36.492 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:37.182 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.158031,
17-03-17 16:53:41.492 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:41.492 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:41.572 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:53:41.572 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:53:41.572 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:53:41.572 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:53:41.591 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:53:41.591 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:53:41.591 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:53:41.801 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:53:41.821 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:53:41.821 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:53:41.871 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:53:41.891 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:53:41.891 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:53:41.991 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:53:41.991 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:53:41.991 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:53:42.021 -07 000000610 INF: LanePump: Recv /0`1872(0x03)\r\n
17-03-17 16:53:42.021 -07 000000610 INF: LanePump: Current Position of Pump is: 1872
17-03-17 16:53:42.021 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:53:42.151 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:53:42.191 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:42.541 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.175685,
17-03-17 16:53:46.491 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:46.491 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:47.901 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.200077,
17-03-17 16:53:51.490 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:51.490 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:53.260 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.178371,
17-03-17 16:53:56.490 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:53:56.490 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:53:57.890 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:57.920 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:58.339 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:58.369 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:58.619 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.177011,
17-03-17 16:53:58.789 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:58.819 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:59.239 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:59.269 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:53:59.689 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:53:59.719 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:00.139 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:00.169 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:00.589 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:00.619 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:00.619 -07 000000610 INF: LanePump: Waited 18429 ms for pump motion to complete
17-03-17 16:54:00.619 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:54:00.749 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:00.779 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:54:00.779 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:54:00.909 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:00.939 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:54:00.939 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:54:00.939 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:54:01.069 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:54:01.099 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:01.489 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:01.489 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:01.529 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:01.559 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:01.559 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:54:01.559 -07 000000610 INF: ===================  ===================
17-03-17 16:54:01.559 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:54:03.979 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.189224,
17-03-17 16:54:06.489 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:06.489 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:09.338 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.190585,
17-03-17 16:54:11.488 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:11.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:14.698 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.182455,
17-03-17 16:54:16.487 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:16.487 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:20.057 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.179769,
17-03-17 16:54:20.267 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:54:20.267 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:54:20.267 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 16:54:20.267 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:54:20.287 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:54:20.287 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 5 to 8. Moving 3 positions.
17-03-17 16:54:20.287 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 16:54:20.587 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:54:20.607 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 16:54:20.607 -07 000000610 INF: ReagentValve: Move+ from 5 to 8 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 16:54:20.657 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:54:20.677 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:54:20.677 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:54:20.777 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:54:20.777 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:54:20.777 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:20.807 -07 000000610 INF: LanePump: Recv /0`2304(0x03)\r\n
17-03-17 16:54:20.807 -07 000000610 INF: LanePump: Current Position of Pump is: 2304
17-03-17 16:54:20.807 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 16:54:20.937 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:54:20.977 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:21.487 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:21.487 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:25.416 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.179769,
17-03-17 16:54:26.436 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:26.466 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:26.486 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:26.486 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:26.886 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:26.916 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:27.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:27.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:27.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:27.816 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:28.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:28.266 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:28.686 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:28.716 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:28.716 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:54:28.716 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 16:54:28.846 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:28.876 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:54:28.876 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:54:29.006 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:29.036 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:54:29.036 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:54:29.036 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:54:29.166 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:54:29.196 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:29.626 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:29.656 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:29.656 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:54:29.656 -07 000000610 INF: ===================  ===================
17-03-17 16:54:29.656 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:54:30.776 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.153984,
17-03-17 16:54:31.486 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:31.486 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:36.135 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.15667,
17-03-17 16:54:36.485 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:36.485 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:36.865 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:54:36.865 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:54:36.865 -07 000000610 INF: ReagentValve: Go to position 7 - PumpToFlowcell start
17-03-17 16:54:36.865 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:54:36.885 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 16:54:36.885 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 8 to 7. Moving 1 positions.
17-03-17 16:54:36.885 -07 000000610 INF: ReagentValve: Xmit -07\r
17-03-17 16:54:37.035 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:54:37.055 -07 000000610 INF: ReagentValve: Recv 00DE\r
17-03-17 16:54:37.055 -07 000000610 INF: ReagentValve: Move- from 8 to 7 took 222 steps, expected 204. Error = 18 steps (8.8%)
17-03-17 16:54:37.105 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:54:37.125 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:54:37.125 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:54:37.225 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:54:37.225 -07 000000610 INF: LanePump: Pumping from 7, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 28 µL, calling command Pumping to Flow Cell #1
17-03-17 16:54:37.225 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:37.265 -07 000000610 INF: LanePump: Recv /0`2472(0x03)\r\n
17-03-17 16:54:37.265 -07 000000610 INF: LanePump: Current Position of Pump is: 2472
17-03-17 16:54:37.265 -07 000000610 INF: =================== Pumping Reagent LPM (7), Aspirating port InputPort ===================
17-03-17 16:54:37.395 -07 000000610 INF: LanePump: Xmit /1V50IP168R\r
17-03-17 16:54:37.435 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:41.484 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:41.494 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.117321,
17-03-17 16:54:42.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:42.924 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:43.344 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:43.374 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:43.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:43.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:44.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:44.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:44.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:44.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:45.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:45.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:45.174 -07 000000610 INF: LanePump: Waited 7739 ms for pump motion to complete
17-03-17 16:54:45.174 -07 000000610 INF: =================== Pumping Reagent LPM (7) ===================
17-03-17 16:54:45.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:45.334 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:54:45.334 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:54:45.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:45.494 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:54:45.494 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:54:45.494 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:54:45.624 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:54:45.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:46.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:46.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:46.114 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:54:46.114 -07 000000610 INF: ===================  ===================
17-03-17 16:54:46.114 -07 000000610 INF: WaitCommand(7200) start
17-03-17 16:54:46.484 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:46.854 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.130926,
17-03-17 16:54:51.483 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:51.483 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:52.213 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.160752,
17-03-17 16:54:53.323 -07 000000610 INF: WaitCommand(7200) end
17-03-17 16:54:53.323 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:54:53.323 -07 000000610 INF: ReagentValve: Go to position 5 - PumpToFlowcell start
17-03-17 16:54:53.323 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:54:53.343 -07 000000610 INF: ReagentValve: Recv 07\r
17-03-17 16:54:53.343 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 7 to 5. Moving 2 positions.
17-03-17 16:54:53.343 -07 000000610 INF: ReagentValve: Xmit -05\r
17-03-17 16:54:53.553 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:54:53.573 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 16:54:53.573 -07 000000610 INF: ReagentValve: Move- from 7 to 5 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 16:54:53.623 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:54:53.643 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:54:53.643 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:54:53.743 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:54:53.743 -07 000000610 INF: LanePump: Pumping from 5, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 72 µL, calling command Pumping to Flow Cell #1
17-03-17 16:54:53.743 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:53.773 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:54:53.773 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:54:53.903 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:53.933 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:54:53.933 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:54:56.483 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:54:56.483 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:54:57.572 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.198716,
17-03-17 16:54:58.102 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:58.132 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:58.132 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:54:58.262 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:54:58.292 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:54:58.722 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:54:58.752 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:54:58.752 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:54:58.882 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:54:58.912 -07 000000610 INF: LanePump: Recv /0`2640(0x03)\r\n
17-03-17 16:54:58.912 -07 000000610 INF: LanePump: Current Position of Pump is: 2640
17-03-17 16:54:59.042 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:54:59.082 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:01.482 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:01.482 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:02.932 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.149902,
17-03-17 16:55:06.481 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:06.481 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:08.061 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:08.091 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:08.291 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.143135,
17-03-17 16:55:08.511 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:08.541 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:08.961 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:08.991 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:09.411 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:09.441 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:09.861 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:09.891 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:55:09.891 -07 000000610 INF: LanePump: Waited 10809 ms for pump motion to complete
17-03-17 16:55:09.891 -07 000000610 INF: =================== Pumping Reagent AMS1 (5), Aspirating port InputPort ===================
17-03-17 16:55:10.021 -07 000000610 INF: LanePump: Xmit /1V50IP432R\r
17-03-17 16:55:10.061 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:11.481 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:11.481 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:13.650 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.15667,
17-03-17 16:55:16.480 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:16.480 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:19.010 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.134971,
17-03-17 16:55:21.480 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:21.480 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:24.369 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.129565,
17-03-17 16:55:25.759 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:25.789 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:26.209 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:26.239 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:26.479 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:26.479 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:26.659 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:26.689 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:27.109 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:27.139 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:27.559 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:27.589 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:28.009 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:28.039 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:28.459 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:28.489 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:28.909 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:28.939 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:55:28.939 -07 000000610 INF: LanePump: Waited 18879 ms for pump motion to complete
17-03-17 16:55:28.939 -07 000000610 INF: =================== Pumping Reagent AMS1 (5) ===================
17-03-17 16:55:29.069 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:55:29.099 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:55:29.099 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:55:29.229 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:55:29.259 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:55:29.259 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:55:29.259 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:55:29.389 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:55:29.419 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:55:29.729 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.155345,
17-03-17 16:55:29.849 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:29.879 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:55:29.879 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:55:29.879 -07 000000610 INF: ===================  ===================
17-03-17 16:55:29.879 -07 000000610 INF: WaitCommand(18700) start
17-03-17 16:55:31.478 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:35.088 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.174325,
17-03-17 16:55:36.478 -07 000000472 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:36.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:40.447 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.175685,
17-03-17 16:55:41.477 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:41.477 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:45.807 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.174325,
17-03-17 16:55:46.477 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:55:46.477 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=13, R2=17, Total=30. Warn if over 250 bubbles per interval.
17-03-17 16:55:48.586 -07 000000610 INF: WaitCommand(18700) end
17-03-17 16:55:48.586 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 16:55:48.586 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 16:55:48.586 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:55:48.606 -07 000000610 INF: ReagentValve: Recv 05\r
17-03-17 16:55:48.606 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 5 to 3. Moving 2 positions.
17-03-17 16:55:48.606 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 16:55:48.816 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:55:48.836 -07 000000610 INF: ReagentValve: Recv 019C\r
17-03-17 16:55:48.836 -07 000000610 INF: ReagentValve: Move- from 5 to 3 took 412 steps, expected 408. Error = 4 steps (1.0%)
17-03-17 16:55:48.886 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:55:48.906 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:55:48.906 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:55:49.006 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:55:49.006 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 16:55:49.006 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:55:49.036 -07 000000610 INF: LanePump: Recv /0`432(0x03)\r\n
17-03-17 16:55:49.036 -07 000000610 INF: LanePump: Current Position of Pump is: 432
17-03-17 16:55:49.036 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 16:55:49.166 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 16:55:49.206 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:51.166 -07 000000472 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.160752,
17-03-17 16:55:51.476 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-17 16:55:51.476 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=16, R2=18, Total=34. Warn if over 250 bubbles per interval.
17-03-17 16:55:52.336 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:52.366 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:52.786 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:52.816 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:53.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:53.266 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:55:53.266 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 16:55:53.266 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 16:55:53.396 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:55:53.426 -07 000000610 INF: LanePump: Recv /0`1152(0x03)\r\n
17-03-17 16:55:53.426 -07 000000610 INF: LanePump: Current Position of Pump is: 1152
17-03-17 16:55:53.556 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:55:53.586 -07 000000610 INF: LanePump: Recv /0`1152(0x03)\r\n
17-03-17 16:55:53.586 -07 000000610 INF: LanePump: Current Position of Pump is: 1152
17-03-17 16:55:53.586 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:55:53.716 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:55:53.746 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:55:54.176 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:55:54.206 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:55:54.206 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:55:54.206 -07 000000610 INF: ===================  ===================
17-03-17 16:55:54.206 -07 000000610 INF: =================== Flow Cell Temp 20° ===================
17-03-17 16:55:54.206 -07 000000610 INF: =================== Flow Cell Temp 20°, FC temperature to 20° ===================
17-03-17 16:55:54.206 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 20000000\n [FlowCellTempControl]
17-03-17 16:55:54.206 -07 000000467 INF: FPGA: Recv TEC2TEMP 
17-03-17 16:55:54.216 -07 000000610 INF: FPGA: 'TEC2TEMP 0 20000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 16:55:54.216 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 16:55:54.216 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 16:55:54.226 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 16:55:54.226 -07 000000610 INF: =================== Flow Cell Temp 20° ===================
17-03-17 16:55:54.226 -07 000000610 INF: ===================  ===================
17-03-17 16:55:55.425 -07 000000610 INF: AsyncDelayTimer waited 1194ms
17-03-17 16:55:55.425 -07 000000610 INF: ReagentValve: Go to position 9 - PumpToFlowcell start
17-03-17 16:55:55.425 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:55:55.445 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 16:55:55.445 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 9. Moving 6 positions.
17-03-17 16:55:55.445 -07 000000610 INF: ReagentValve: Xmit +09\r
17-03-17 16:55:55.985 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 16:55:56.005 -07 000000610 INF: ReagentValve: Recv 04E0\r
17-03-17 16:55:56.005 -07 000000610 INF: ReagentValve: Move+ from 3 to 9 took 1248 steps, expected 1225. Error = 23 steps (1.9%)
17-03-17 16:55:56.055 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 16:55:56.075 -07 000000610 INF: ReagentValve: Recv 09\r
17-03-17 16:55:56.075 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 16:55:56.175 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 16:55:56.175 -07 000000610 INF: LanePump: Pumping from 9, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 16:55:56.175 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:55:56.205 -07 000000610 INF: LanePump: Recv /0`1152(0x03)\r\n
17-03-17 16:55:56.205 -07 000000610 INF: LanePump: Current Position of Pump is: 1152
17-03-17 16:55:56.205 -07 000000610 INF: =================== Pumping Reagent LMX1 (9), Aspirating port InputPort ===================
17-03-17 16:55:56.335 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 16:55:56.375 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:55:56.475 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-17 16:55:56.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=17, R2=21, Total=38. Warn if over 250 bubbles per interval.
17-03-17 16:55:56.525 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.182455,
17-03-17 16:56:01.475 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 16:56:01.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=18, R2=23, Total=41. Warn if over 250 bubbles per interval.
17-03-17 16:56:01.885 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.141774,
17-03-17 16:56:03.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:03.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:04.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:04.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:04.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:04.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:05.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:05.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:05.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:05.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:05.624 -07 000000610 INF: LanePump: Waited 9249 ms for pump motion to complete
17-03-17 16:56:05.624 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 16:56:05.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:56:05.784 -07 000000610 INF: LanePump: Recv /0`2952(0x03)\r\n
17-03-17 16:56:05.784 -07 000000610 INF: LanePump: Current Position of Pump is: 2952
17-03-17 16:56:05.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:56:05.944 -07 000000610 INF: LanePump: Recv /0`2952(0x03)\r\n
17-03-17 16:56:05.944 -07 000000610 INF: LanePump: Current Position of Pump is: 2952
17-03-17 16:56:05.944 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:56:06.074 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:56:06.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:06.474 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 16:56:06.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=23, Total=43. Warn if over 250 bubbles per interval.
17-03-17 16:56:06.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:06.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:06.564 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 16:56:06.564 -07 000000610 INF: ===================  ===================
17-03-17 16:56:06.564 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 16:56:06.564 -07 000000610 INF: LanePump: Pumping from 9, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 75 µL, calling command Pumping to Flow Cell #1
17-03-17 16:56:06.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:56:06.724 -07 000000610 INF: LanePump: Recv /0`2952(0x03)\r\n
17-03-17 16:56:06.724 -07 000000610 INF: LanePump: Current Position of Pump is: 2952
17-03-17 16:56:06.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:56:06.884 -07 000000610 INF: LanePump: Recv /0`2952(0x03)\r\n
17-03-17 16:56:06.884 -07 000000610 INF: LanePump: Current Position of Pump is: 2952
17-03-17 16:56:07.244 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.144495,
17-03-17 16:56:11.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:11.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:11.084 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 16:56:11.214 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 16:56:11.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:11.474 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 16:56:11.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=24, Total=44. Warn if over 250 bubbles per interval.
17-03-17 16:56:11.673 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:11.703 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:11.703 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:56:11.833 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:56:11.863 -07 000000610 INF: LanePump: Recv /0`2952(0x03)\r\n
17-03-17 16:56:11.863 -07 000000610 INF: LanePump: Current Position of Pump is: 2952
17-03-17 16:56:11.993 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 16:56:12.023 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:12.603 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.14582,
17-03-17 16:56:16.473 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 16:56:16.473 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:17.963 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.163474,
17-03-17 16:56:21.472 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:21.472 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:22.252 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:22.282 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:22.702 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:22.732 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:23.152 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:23.292 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:23.592 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.16752,
17-03-17 16:56:23.712 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:23.742 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:24.162 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:24.192 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:24.192 -07 000000610 INF: LanePump: Waited 12169 ms for pump motion to complete
17-03-17 16:56:24.192 -07 000000610 INF: =================== Pumping Reagent LMX1 (9), Aspirating port InputPort ===================
17-03-17 16:56:24.322 -07 000000610 INF: LanePump: Xmit /1V50IP450R\r
17-03-17 16:56:24.362 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:26.472 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:26.472 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:28.951 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.185176,
17-03-17 16:56:31.501 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:31.501 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:34.311 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.166195,
17-03-17 16:56:36.471 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:36.471 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:39.670 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.15667,
17-03-17 16:56:40.780 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:40.810 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:41.230 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:41.260 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:41.470 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:41.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:41.680 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:41.710 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:42.130 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:42.160 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:42.580 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:42.610 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:43.030 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:43.060 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:43.480 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:43.510 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 16:56:43.930 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:43.960 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:43.960 -07 000000610 INF: LanePump: Waited 19599 ms for pump motion to complete
17-03-17 16:56:43.960 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 16:56:44.090 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:56:44.120 -07 000000610 INF: LanePump: Recv /0`450(0x03)\r\n
17-03-17 16:56:44.120 -07 000000610 INF: LanePump: Current Position of Pump is: 450
17-03-17 16:56:44.250 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 16:56:44.280 -07 000000610 INF: LanePump: Recv /0`450(0x03)\r\n
17-03-17 16:56:44.280 -07 000000610 INF: LanePump: Current Position of Pump is: 450
17-03-17 16:56:44.280 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 16:56:44.410 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 16:56:44.440 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:44.870 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 16:56:44.899 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 16:56:44.899 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 16:56:44.899 -07 000000610 INF: ===================  ===================
17-03-17 16:56:44.899 -07 000000610 INF: =================== Flow Cell Temp 46° ===================
17-03-17 16:56:44.899 -07 000000610 INF: =================== Flow Cell Temp 46°, FC temperature to 46° ===================
17-03-17 16:56:44.899 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 46000000\n [FlowCellTempControl]
17-03-17 16:56:44.899 -07 000000489 INF: FPGA: Recv TEC2TEMP 
17-03-17 16:56:44.909 -07 000000610 INF: FPGA: 'TEC2TEMP 0 46000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 16:56:44.909 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 16:56:45.779 -07 000000489 INF: FPGA: Recv TEC2EN 
17-03-17 16:56:45.779 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 860 ms to get response, and 870 ms overall
17-03-17 16:56:45.779 -07 000000610 INF: =================== Flow Cell Temp 46° ===================
17-03-17 16:56:45.779 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.140413,
17-03-17 16:56:45.779 -07 000000610 INF: ===================  ===================
17-03-17 16:56:45.779 -07 000000610 INF: WaitCommand(300000) start
17-03-17 16:56:46.469 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:46.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:51.139 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.151263,
17-03-17 16:56:51.469 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:51.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:56.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:56:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:56:56.498 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.155345,
17-03-17 16:57:01.468 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:01.857 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.126808,
17-03-17 16:57:06.467 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:06.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:07.217 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.151263,
17-03-17 16:57:11.466 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:11.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:12.576 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636,
17-03-17 16:57:16.466 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:16.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:17.936 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.132286,
17-03-17 16:57:21.465 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:21.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:23.295 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.115961,
17-03-17 16:57:26.465 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:26.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:28.654 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.132286,
17-03-17 16:57:31.464 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:31.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:34.714 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.148541,
17-03-17 16:57:36.463 -07 000000489 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:36.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:40.073 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.152623,
17-03-17 16:57:41.463 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:41.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:45.433 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.141774,
17-03-17 16:57:46.463 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:46.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:50.792 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.134971,
17-03-17 16:57:51.462 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:51.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:57:56.152 -07 000000489 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.124123,
17-03-17 16:57:56.772 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:57:56.772 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:01.462 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:01.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:02.092 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.155345,
17-03-17 16:58:06.462 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:06.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:07.452 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.187863,
17-03-17 16:58:11.462 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:11.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:12.811 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.174325,
17-03-17 16:58:16.461 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:16.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:18.171 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.139053,
17-03-17 16:58:21.461 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:21.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:23.531 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.128204,
17-03-17 16:58:26.461 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:26.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:28.891 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.129565,
17-03-17 16:58:31.461 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:31.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:34.251 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.126808,
17-03-17 16:58:36.461 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:36.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:39.610 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.133611,
17-03-17 16:58:41.460 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:41.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:45.760 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.140413,
17-03-17 16:58:46.460 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:46.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:51.130 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.153984,
17-03-17 16:58:51.460 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:51.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:56.460 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:58:56.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:58:56.500 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.166195,
17-03-17 16:59:01.460 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:01.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:01.870 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.133611,
17-03-17 16:59:06.469 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:06.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:07.239 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.158031,
17-03-17 16:59:11.469 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:11.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:13.209 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.159391,
17-03-17 16:59:16.469 -07 000000463 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:16.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:18.569 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.139053,
17-03-17 16:59:21.469 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:21.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:23.939 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.129565,
17-03-17 16:59:26.469 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:26.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:29.308 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.121402,
17-03-17 16:59:31.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:31.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:34.678 -07 000000451 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.094233,
17-03-17 16:59:36.468 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:36.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:40.048 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.098313,
17-03-17 16:59:41.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:41.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:45.418 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.092873,
17-03-17 16:59:46.468 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:46.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:50.788 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.132286,
17-03-17 16:59:51.468 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:51.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:57.097 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 16:59:57.097 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 16:59:57.097 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.122763,
17-03-17 17:00:01.467 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:01.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:02.457 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636,
17-03-17 17:00:06.467 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:06.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:07.827 -07 000000463 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.113276,
17-03-17 17:00:11.467 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:11.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:13.197 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.109195,
17-03-17 17:00:16.467 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:16.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:18.566 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.091548,
17-03-17 17:00:21.466 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:21.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:23.936 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.092873,
17-03-17 17:00:26.466 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:26.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:29.306 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.102394,
17-03-17 17:00:31.466 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:31.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:35.466 -07 000000451 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.132286,
17-03-17 17:00:36.466 -07 000000451 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:36.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:40.826 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636,
17-03-17 17:00:41.466 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:41.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:46.195 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.126808,
17-03-17 17:00:46.465 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:46.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:51.465 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:51.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:51.565 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.117321,
17-03-17 17:00:56.465 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:00:56.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:00:56.925 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.120042,
17-03-17 17:01:01.465 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:01.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:02.285 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.087432,
17-03-17 17:01:06.465 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:06.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:07.644 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.117321,
17-03-17 17:01:11.464 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:11.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:13.504 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636,
17-03-17 17:01:16.464 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:16.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:18.864 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.101034,
17-03-17 17:01:21.464 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:21.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:24.224 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.095593,
17-03-17 17:01:26.464 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:26.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:29.584 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.090153,
17-03-17 17:01:31.464 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:31.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:34.943 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.125484,
17-03-17 17:01:36.463 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:36.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:40.303 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.133611,
17-03-17 17:01:42.243 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:42.243 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:45.663 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.162113,
17-03-17 17:01:45.783 -07 000000610 INF: WaitCommand(300000) end
17-03-17 17:01:45.783 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 17:01:45.783 -07 000000610 INF: LanePump: Pumping from 9, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 25 µL, calling command Pumping to Flow Cell #1
17-03-17 17:01:45.783 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:01:45.823 -07 000000610 INF: LanePump: Recv /0`450(0x03)\r\n
17-03-17 17:01:45.823 -07 000000610 INF: LanePump: Current Position of Pump is: 450
17-03-17 17:01:45.823 -07 000000610 INF: =================== Pumping Reagent LMX1 (9), Aspirating port InputPort ===================
17-03-17 17:01:45.953 -07 000000610 INF: LanePump: Xmit /1V50IP150R\r
17-03-17 17:01:45.993 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:01:46.463 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:46.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:50.913 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:01:50.943 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:01:51.023 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.125484,
17-03-17 17:01:51.363 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:01:51.393 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:01:51.463 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:51.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:01:51.813 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:01:51.843 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:01:52.263 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:01:52.293 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:01:52.713 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:01:52.743 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:01:53.163 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:01:53.193 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:01:53.193 -07 000000610 INF: LanePump: Waited 7199 ms for pump motion to complete
17-03-17 17:01:53.193 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 17:01:53.323 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:01:53.353 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 17:01:53.353 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 17:01:53.483 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:01:53.513 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 17:01:53.513 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 17:01:53.513 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:01:53.643 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:01:53.673 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:01:54.103 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:01:54.133 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:01:54.133 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:01:54.133 -07 000000610 INF: ===================  ===================
17-03-17 17:01:54.133 -07 000000610 INF: WaitCommand(300000) start
17-03-17 17:01:56.383 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.126808,
17-03-17 17:01:56.463 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:01:56.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:01.462 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:01.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:01.742 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.113276,
17-03-17 17:02:06.462 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:06.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:07.102 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.109195,
17-03-17 17:02:11.462 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:11.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:12.462 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.122763,
17-03-17 17:02:16.462 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:16.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:17.822 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636,
17-03-17 17:02:21.462 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:21.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:23.181 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.115961,
17-03-17 17:02:26.461 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:26.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:28.541 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.128204,
17-03-17 17:02:32.131 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:32.131 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:33.901 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.084713,
17-03-17 17:02:36.461 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:36.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:39.261 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.096953,
17-03-17 17:02:41.461 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:41.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:44.621 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.092873,
17-03-17 17:02:46.461 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:46.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:49.981 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.103754,
17-03-17 17:02:51.461 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:51.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:02:55.341 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.094233,
17-03-17 17:02:56.461 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:02:56.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:00.701 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.090153,
17-03-17 17:03:01.461 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:01.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:06.060 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.092873,
17-03-17 17:03:06.460 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:06.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:11.420 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.121402,
17-03-17 17:03:11.460 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:11.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:16.470 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:16.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:16.780 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.111916,
17-03-17 17:03:21.460 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:21.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:22.140 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.102394,
17-03-17 17:03:26.460 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:26.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:27.500 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.109195,
17-03-17 17:03:31.460 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:31.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:32.860 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.083353,
17-03-17 17:03:36.460 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:36.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:38.220 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06027,
17-03-17 17:03:41.460 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:41.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:43.580 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:03:46.470 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:46.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:48.940 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.087432,
17-03-17 17:03:51.470 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:51.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:54.300 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.130926,
17-03-17 17:03:56.470 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:03:56.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:03:59.660 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.113276,
17-03-17 17:04:01.470 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:01.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:05.020 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.113276,
17-03-17 17:04:06.460 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:06.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:10.380 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.144495,
17-03-17 17:04:11.460 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:11.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:15.740 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.115961,
17-03-17 17:04:16.460 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:16.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:21.100 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.102394,
17-03-17 17:04:21.460 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:21.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:26.460 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.072508,
17-03-17 17:04:26.460 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:26.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:31.460 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:31.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:31.820 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.077912,
17-03-17 17:04:36.460 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:36.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:37.180 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.091548,
17-03-17 17:04:41.460 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:41.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:42.540 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.073868,
17-03-17 17:04:46.459 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:46.459 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:47.899 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.098313,
17-03-17 17:04:51.459 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:51.459 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:53.259 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.103754,
17-03-17 17:04:56.459 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:04:56.459 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:04:58.619 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.137692,
17-03-17 17:05:01.459 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:01.459 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:03.979 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.091548,
17-03-17 17:05:06.459 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:06.459 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:09.339 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.115961,
17-03-17 17:05:11.459 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:11.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:14.699 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.083353,
17-03-17 17:05:16.459 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:16.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:20.059 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.106475,
17-03-17 17:05:21.459 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:21.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:25.419 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.091548,
17-03-17 17:05:26.469 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:26.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:30.779 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.103754,
17-03-17 17:05:31.469 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:31.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:36.139 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.106475,
17-03-17 17:05:36.469 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:36.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:41.469 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:41.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:41.499 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636,
17-03-17 17:05:46.469 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:46.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:46.859 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.088793,
17-03-17 17:05:51.469 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:51.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:52.219 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.088793,
17-03-17 17:05:56.469 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:05:56.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:05:57.579 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.106475,
17-03-17 17:06:01.469 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:01.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:02.939 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.115961,
17-03-17 17:06:06.469 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:06.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:08.299 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.122763,
17-03-17 17:06:11.469 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:11.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:13.659 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.122763,
17-03-17 17:06:16.469 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:16.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:19.019 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.113276,
17-03-17 17:06:21.469 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:21.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:24.379 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.106475,
17-03-17 17:06:26.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:26.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:29.738 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:06:31.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:31.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:35.098 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.067069,
17-03-17 17:06:36.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:36.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:40.458 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.080668,
17-03-17 17:06:41.468 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:41.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:45.818 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.088793,
17-03-17 17:06:46.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:46.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:51.178 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.125484,
17-03-17 17:06:51.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:51.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:54.138 -07 000000610 INF: WaitCommand(300000) end
17-03-17 17:06:54.138 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 17:06:54.138 -07 000000610 INF: LanePump: Pumping from 9, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 25 µL, calling command Pumping to Flow Cell #1
17-03-17 17:06:54.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:06:54.288 -07 000000610 INF: LanePump: Recv /0`600(0x03)\r\n
17-03-17 17:06:54.288 -07 000000610 INF: LanePump: Current Position of Pump is: 600
17-03-17 17:06:54.288 -07 000000610 INF: =================== Pumping Reagent LMX1 (9), Aspirating port InputPort ===================
17-03-17 17:06:54.418 -07 000000610 INF: LanePump: Xmit /1V50IP150R\r
17-03-17 17:06:54.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:06:56.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:06:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:06:56.538 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.121402,
17-03-17 17:06:59.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:06:59.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:06:59.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:06:59.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:07:00.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:07:00.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:07:00.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:07:00.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:07:01.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:07:01.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:07:01.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:01.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:07:01.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:07:01.658 -07 000000610 INF: LanePump: Waited 7199 ms for pump motion to complete
17-03-17 17:07:01.658 -07 000000610 INF: =================== Pumping Reagent LMX1 (9) ===================
17-03-17 17:07:01.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:07:01.818 -07 000000610 INF: LanePump: Recv /0`750(0x03)\r\n
17-03-17 17:07:01.818 -07 000000610 INF: LanePump: Current Position of Pump is: 750
17-03-17 17:07:01.898 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.103754,
17-03-17 17:07:01.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:07:01.978 -07 000000610 INF: LanePump: Recv /0`750(0x03)\r\n
17-03-17 17:07:01.978 -07 000000610 INF: LanePump: Current Position of Pump is: 750
17-03-17 17:07:01.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:07:02.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:07:02.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:07:02.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:07:02.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:07:02.598 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:07:02.598 -07 000000610 INF: ===================  ===================
17-03-17 17:07:02.598 -07 000000610 INF: WaitCommand(300000) start
17-03-17 17:07:06.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:07.258 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.117321,
17-03-17 17:07:11.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:12.618 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:07:16.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:16.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:17.978 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06027,
17-03-17 17:07:21.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:21.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:23.338 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.084713,
17-03-17 17:07:26.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:26.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:28.698 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:07:31.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:31.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:34.058 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.079272,
17-03-17 17:07:36.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:36.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:40.298 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:07:41.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:41.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:45.658 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:07:46.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:46.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:51.018 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.084713,
17-03-17 17:07:51.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:51.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:07:56.378 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.077912,
17-03-17 17:07:56.468 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:07:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:01.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:01.738 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:08:06.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:07.098 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06027,
17-03-17 17:08:11.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:13.278 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.095593,
17-03-17 17:08:16.468 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:16.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:18.638 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.098313,
17-03-17 17:08:21.758 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:21.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:23.998 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.113276,
17-03-17 17:08:26.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:26.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:29.358 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.086108,
17-03-17 17:08:31.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:31.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:34.718 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.072508,
17-03-17 17:08:36.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:36.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:40.078 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.080668,
17-03-17 17:08:41.468 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:41.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:45.438 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.047997,
17-03-17 17:08:46.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:46.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:51.358 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.102394,
17-03-17 17:08:51.468 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:51.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:56.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:08:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:08:56.718 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.140413,
17-03-17 17:09:01.468 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:02.078 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.095593,
17-03-17 17:09:06.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:07.438 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.094233,
17-03-17 17:09:11.478 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:11.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:12.798 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.094233,
17-03-17 17:09:16.478 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:18.158 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.080668,
17-03-17 17:09:21.468 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:21.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:23.518 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.087432,
17-03-17 17:09:26.568 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:26.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:28.878 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.067069,
17-03-17 17:09:31.468 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:31.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:34.238 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.083353,
17-03-17 17:09:36.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:36.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:40.348 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.05619,
17-03-17 17:09:41.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:41.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:45.708 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.050752,
17-03-17 17:09:46.468 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:46.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:51.068 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.065709,
17-03-17 17:09:51.468 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:51.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:09:56.428 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.065709,
17-03-17 17:09:56.468 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:09:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:01.478 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:01.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:01.788 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.072508,
17-03-17 17:10:06.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:07.148 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:10:11.468 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:12.508 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.086108,
17-03-17 17:10:16.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:16.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:17.868 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.090153,
17-03-17 17:10:21.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:21.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:23.228 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.075228,
17-03-17 17:10:26.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:26.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:28.588 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.065709,
17-03-17 17:10:31.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:31.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:34.508 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.042558,
17-03-17 17:10:36.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:36.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:40.888 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.041198,
17-03-17 17:10:41.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:41.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:46.248 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.047997,
17-03-17 17:10:46.468 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:46.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:51.468 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:51.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:51.608 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.052111,
17-03-17 17:10:56.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:10:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:10:56.968 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06163,
17-03-17 17:11:01.468 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:02.328 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.009895,
17-03-17 17:11:06.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:07.688 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.043918,
17-03-17 17:11:11.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:13.048 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06027,
17-03-17 17:11:16.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:16.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:18.408 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06299,
17-03-17 17:11:21.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:21.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:23.768 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.030322,
17-03-17 17:11:26.468 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:26.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:29.128 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.019446,
17-03-17 17:11:31.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:34.488 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 3.990831,
17-03-17 17:11:36.478 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:36.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:40.518 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.018051,
17-03-17 17:11:41.478 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:41.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:45.878 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.081993,
17-03-17 17:11:46.478 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:46.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:51.238 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.224437,
17-03-17 17:11:51.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:51.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:56.478 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:11:56.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:11:56.598 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.34067,
17-03-17 17:12:01.478 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:01.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:02.608 -07 000000610 INF: WaitCommand(300000) end
17-03-17 17:12:02.608 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 17:12:02.608 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:12:02.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:02.618 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.424241,
17-03-17 17:12:02.638 -07 000000610 INF: ReagentValve: Recv 09\r
17-03-17 17:12:02.638 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 9 to 3. Moving 6 positions.
17-03-17 17:12:02.638 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:12:03.178 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:12:03.198 -07 000000610 INF: ReagentValve: Recv 04E0\r
17-03-17 17:12:03.198 -07 000000610 INF: ReagentValve: Move- from 9 to 3 took 1248 steps, expected 1225. Error = 23 steps (1.9%)
17-03-17 17:12:03.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:03.268 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:12:03.268 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:12:03.368 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 17:12:03.368 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:12:03.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:03.398 -07 000000610 INF: LanePump: Recv /0`750(0x03)\r\n
17-03-17 17:12:03.398 -07 000000610 INF: LanePump: Current Position of Pump is: 750
17-03-17 17:12:03.398 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:12:03.528 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:12:03.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:06.478 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:06.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:06.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:06.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:07.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:07.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:07.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:07.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:07.628 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:12:07.628 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 17:12:07.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:07.788 -07 000000610 INF: LanePump: Recv /0`1470(0x03)\r\n
17-03-17 17:12:07.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1470
17-03-17 17:12:07.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:07.948 -07 000000610 INF: LanePump: Recv /0`1470(0x03)\r\n
17-03-17 17:12:07.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1470
17-03-17 17:12:07.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:12:07.978 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.448425,
17-03-17 17:12:08.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:12:08.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:08.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:08.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:08.568 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:12:08.568 -07 000000610 INF: ===================  ===================
17-03-17 17:12:08.568 -07 000000610 INF: =================== Flow Cell Temp 20° ===================
17-03-17 17:12:08.568 -07 000000610 INF: =================== Flow Cell Temp 20°, FC temperature to 20° ===================
17-03-17 17:12:08.568 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 20000000\n [FlowCellTempControl]
17-03-17 17:12:08.568 -07 000000576 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:12:08.578 -07 000000610 INF: FPGA: 'TEC2TEMP 0 20000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:12:08.578 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:12:08.578 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 17:12:08.588 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:12:08.588 -07 000000610 INF: =================== Flow Cell Temp 20° ===================
17-03-17 17:12:08.588 -07 000000610 INF: ===================  ===================
17-03-17 17:12:09.788 -07 000000610 INF: AsyncDelayTimer waited 1196ms
17-03-17 17:12:09.788 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:12:09.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:09.808 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:12:09.808 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:12:09.808 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:12:10.018 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:12:10.038 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:12:10.038 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:12:10.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:10.108 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:12:10.108 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:12:10.208 -07 000000610 INF: =================== Pumping Reagent IMT (1) ===================
17-03-17 17:12:10.208 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 17:12:10.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:10.238 -07 000000610 INF: LanePump: Recv /0`1470(0x03)\r\n
17-03-17 17:12:10.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1470
17-03-17 17:12:10.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:10.398 -07 000000610 INF: LanePump: Recv /0`1470(0x03)\r\n
17-03-17 17:12:10.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1470
17-03-17 17:12:11.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:11.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:13.338 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.443042,
17-03-17 17:12:14.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:14.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:14.598 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 17:12:14.728 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 17:12:14.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:15.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:15.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:15.218 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:12:15.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:15.378 -07 000000610 INF: LanePump: Recv /0`1470(0x03)\r\n
17-03-17 17:12:15.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1470
17-03-17 17:12:15.508 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 17:12:15.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:16.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:18.698 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.447097,
17-03-17 17:12:20.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:20.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:20.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:20.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:21.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:21.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:21.478 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:21.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:21.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:21.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:21.758 -07 000000610 INF: LanePump: Waited 6209 ms for pump motion to complete
17-03-17 17:12:21.758 -07 000000610 INF: =================== Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:12:21.888 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 17:12:21.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:24.058 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.406734,
17-03-17 17:12:26.478 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:26.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:29.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:29.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:29.418 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.436332,
17-03-17 17:12:29.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:29.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:30.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:30.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:30.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:30.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:31.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:31.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:31.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:31.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:31.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:31.628 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 17:12:31.628 -07 000000610 INF: =================== Pumping Reagent IMT (1) ===================
17-03-17 17:12:31.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:31.788 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:31.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:31.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:31.948 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:31.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:31.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:12:32.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:12:32.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:32.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:32.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:32.568 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:12:32.568 -07 000000610 INF: ===================  ===================
17-03-17 17:12:33.788 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:12:33.788 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 17:12:33.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:33.808 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:12:33.808 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 2. Moving 1 positions.
17-03-17 17:12:33.808 -07 000000610 INF: ReagentValve: Xmit +02\r
17-03-17 17:12:33.958 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:12:33.978 -07 000000610 INF: ReagentValve: Recv 00DF\r
17-03-17 17:12:33.978 -07 000000610 INF: ReagentValve: Move+ from 1 to 2 took 223 steps, expected 204. Error = 19 steps (9.3%)
17-03-17 17:12:34.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:34.048 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:12:34.048 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:12:34.148 -07 000000610 INF: =================== Pumping Reagent USM (2) ===================
17-03-17 17:12:34.148 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 17:12:34.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:34.178 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:34.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:34.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:34.338 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:34.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:34.778 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.39999,
17-03-17 17:12:36.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:36.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:38.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:38.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:38.538 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 17:12:38.668 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 17:12:38.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:39.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:39.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:39.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:12:39.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:39.318 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:39.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:39.448 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 17:12:39.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:40.138 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.36631,
17-03-17 17:12:41.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:41.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:45.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:45.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:45.498 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.350101,
17-03-17 17:12:45.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:45.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:46.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:46.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:46.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:46.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:46.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:46.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:47.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:47.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:47.138 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 17:12:47.138 -07 000000610 INF: =================== Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 17:12:47.268 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 17:12:47.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:50.858 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.323138,
17-03-17 17:12:51.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:12:51.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=20, R2=25, Total=45. Warn if over 250 bubbles per interval.
17-03-17 17:12:54.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:54.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:55.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:55.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:55.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:55.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:56.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:56.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:56.218 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.316362,
17-03-17 17:12:56.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 17:12:56.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=22, R2=26, Total=48. Warn if over 250 bubbles per interval.
17-03-17 17:12:56.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:56.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:12:56.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:57.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:57.008 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 17:12:57.008 -07 000000610 INF: =================== Pumping Reagent USM (2) ===================
17-03-17 17:12:57.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:57.168 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:57.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:57.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:57.328 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:57.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:57.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:12:57.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:12:57.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:57.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:12:57.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:12:57.948 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:12:57.948 -07 000000610 INF: ===================  ===================
17-03-17 17:12:59.168 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:12:59.168 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 17:12:59.168 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:59.188 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:12:59.188 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 4. Moving 2 positions.
17-03-17 17:12:59.188 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 17:12:59.398 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:12:59.418 -07 000000610 INF: ReagentValve: Recv 019A\r
17-03-17 17:12:59.418 -07 000000610 INF: ReagentValve: Move+ from 2 to 4 took 410 steps, expected 408. Error = 2 steps (0.5%)
17-03-17 17:12:59.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:12:59.488 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:12:59.488 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:12:59.588 -07 000000610 INF: =================== Pumping Reagent CMS (4) ===================
17-03-17 17:12:59.588 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 17:12:59.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:59.618 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:59.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:12:59.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:12:59.778 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:12:59.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:13:01.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 17:13:01.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=22, R2=27, Total=49. Warn if over 250 bubbles per interval.
17-03-17 17:13:01.578 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.275821,
17-03-17 17:13:03.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:03.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:03.978 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 17:13:04.108 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 17:13:04.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:04.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:04.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:04.598 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:13:04.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:04.758 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:13:04.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:13:04.888 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 17:13:04.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:06.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:06.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=22, R2=27, Total=49. Warn if over 250 bubbles per interval.
17-03-17 17:13:06.938 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.274495,
17-03-17 17:13:10.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:10.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:11.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:11.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:11.478 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:11.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=22, R2=27, Total=49. Warn if over 250 bubbles per interval.
17-03-17 17:13:11.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:11.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:12.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:12.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:12.298 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.260984,
17-03-17 17:13:12.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:12.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:12.578 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 17:13:12.578 -07 000000610 INF: =================== Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 17:13:12.708 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 17:13:12.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:16.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 17:13:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=27, Total=50. Warn if over 250 bubbles per interval.
17-03-17 17:13:17.658 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.223111,
17-03-17 17:13:20.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:20.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:20.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:20.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:21.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:21.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:21.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 17:13:21.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:13:21.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:21.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:21.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:21.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:22.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:22.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:22.448 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 17:13:22.448 -07 000000610 INF: =================== Pumping Reagent CMS (4) ===================
17-03-17 17:13:22.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:22.608 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:13:22.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:13:22.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:22.768 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:13:22.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:13:22.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:13:22.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:13:22.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:23.018 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.205486,
17-03-17 17:13:23.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:23.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:23.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:13:23.388 -07 000000610 INF: ===================  ===================
17-03-17 17:13:24.608 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:13:24.608 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:13:24.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:13:24.628 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:13:24.628 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 17:13:24.628 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:13:24.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:13:24.798 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 17:13:24.798 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 17:13:24.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:13:24.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:13:24.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:13:24.968 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 17:13:24.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 17:13:24.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:24.998 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:13:24.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:13:25.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:25.158 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:13:25.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:13:26.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:26.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:13:28.378 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.228521,
17-03-17 17:13:29.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:29.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:29.358 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 17:13:29.488 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 17:13:29.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:29.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:29.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:29.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:13:30.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:30.138 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:13:30.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:13:30.268 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 17:13:30.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:31.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:13:33.738 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.216304,
17-03-17 17:13:36.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:36.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:36.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:36.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:13:36.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:36.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:37.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:37.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:37.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:37.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:37.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:37.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:37.958 -07 000000610 INF: LanePump: Waited 7649 ms for pump motion to complete
17-03-17 17:13:37.958 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:13:38.088 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 17:13:38.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:39.098 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.202764,
17-03-17 17:13:41.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:41.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:13:44.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:44.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:44.458 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.185176,
17-03-17 17:13:44.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:44.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:45.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:45.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:45.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:45.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:46.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:46.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:46.088 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 17:13:46.088 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 17:13:46.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:46.248 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:13:46.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:13:46.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:46.408 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:13:46.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:13:46.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:13:46.478 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:46.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:13:46.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:13:46.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:46.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:13:47.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:13:47.028 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:13:47.028 -07 000000610 INF: ===================  ===================
17-03-17 17:13:47.028 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:13:47.028 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 75.3833 mm, delta = -0.0027 mm
17-03-17 17:13:47.028 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:13:47.038 -07 000000462 INF: FPGA: Recv YRDPOS 154386
17-03-17 17:13:47.038 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:13:47.038 -07 000000610 INF: Y Motor: Encoder = 154386 = motor step 120614.1 = 75.3838 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:13:47.038 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-17 17:13:47.038 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:13:47.038 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:13:47.078 -07 000000438 INF: FPGA: Recv YMVTO 154380 12
17-03-17 17:13:47.078 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 34 ms to get response, and 37 ms overall
17-03-17 17:13:47.078 -07 000000610 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:13:47.078 -07 000000610 INF: Y Motor: To move from 75.384 to 75.381 (-0.003 mm) should take 5 steps, but required 12 steps (0.008 mm). Slippage = 0.004 mm (-1.61%).
17-03-17 17:13:47.078 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 37 ms, distance = 0.003 mm, average velocity = 0.074 mm/sec
17-03-17 17:13:49.818 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.183815,
17-03-17 17:13:50.078 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:13:50.078 -07 000000627 INF: FPGA: Recv YRDPOS 154373
17-03-17 17:13:50.088 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:13:50.088 -07 000000610 INF: Y Motor: Encoder = 154373 = motor step 120603.9 = 75.3774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:13:50.088 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.003139, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:13:50.088 -07 000000610 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 17:13:50.088 -07 000000610 INF: Y Motor: Moved to 75.3774 after 3053 ms
17-03-17 17:13:50.088 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 17:13:50.088 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 17:13:50.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:13:50.118 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:13:50.118 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 8. Moving 5 positions.
17-03-17 17:13:50.118 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 17:13:50.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:13:50.598 -07 000000610 INF: ReagentValve: Recv 0413\r
17-03-17 17:13:50.598 -07 000000610 INF: ReagentValve: Move+ from 3 to 8 took 1043 steps, expected 1021. Error = 22 steps (2.2%)
17-03-17 17:13:50.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:13:50.668 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 17:13:50.668 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:13:50.768 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 17:13:50.768 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 75 µL, calling command Pumping to Flow Cell #1
17-03-17 17:13:50.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:13:50.798 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:13:50.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:13:50.798 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 17:13:50.928 -07 000000610 INF: LanePump: Xmit /1V50IP450R\r
17-03-17 17:13:50.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:13:51.478 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:51.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:13:55.178 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.177011,
17-03-17 17:13:56.478 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:13:56.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:01.328 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.182455,
17-03-17 17:14:01.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:01.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:06.478 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:06.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:06.688 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.179769,
17-03-17 17:14:07.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:07.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:14:07.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:07.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:14:08.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:08.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:14:08.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:08.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:14:09.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:09.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:14:09.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:09.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:14:10.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:10.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:14:10.308 -07 000000610 INF: LanePump: Waited 19339 ms for pump motion to complete
17-03-17 17:14:10.308 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 17:14:10.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:14:10.468 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 17:14:10.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 17:14:10.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:14:10.628 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 17:14:10.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 17:14:10.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:14:10.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:14:10.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:14:11.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:14:11.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:14:11.248 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:14:11.248 -07 000000610 INF: ===================  ===================
17-03-17 17:14:11.248 -07 000000610 INF: =================== Flow Cell Temp 65° ===================
17-03-17 17:14:11.248 -07 000000610 INF: =================== Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:14:11.248 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:14:11.258 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:14:11.258 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 1 ms to get response, and 7 ms overall
17-03-17 17:14:11.258 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:14:11.258 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 17:14:11.268 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:14:11.268 -07 000000610 INF: =================== Flow Cell Temp 65° ===================
17-03-17 17:14:11.268 -07 000000610 INF: WaitCommand(60000) start
17-03-17 17:14:11.478 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:11.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:12.048 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.159391,
17-03-17 17:14:16.478 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:17.408 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.168881,
17-03-17 17:14:21.478 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:21.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:22.768 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.15667,
17-03-17 17:14:26.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:26.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:28.128 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.164834,
17-03-17 17:14:31.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:33.488 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.152623,
17-03-17 17:14:36.478 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:36.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:39.348 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.152623,
17-03-17 17:14:41.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:41.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:44.708 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.175685,
17-03-17 17:14:46.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:46.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:50.068 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.122763,
17-03-17 17:14:51.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:51.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:14:56.408 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.126808,
17-03-17 17:14:56.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:14:56.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:15:01.478 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:01.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:15:01.768 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.160752,
17-03-17 17:15:06.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:06.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:15:07.128 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.132286,
17-03-17 17:15:11.278 -07 000000610 INF: WaitCommand(60000) end
17-03-17 17:15:11.278 -07 000000610 INF: ===================  ===================
17-03-17 17:15:11.278 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 17:15:11.278 -07 000000610 INF: ReagentValve: Go to position 12 - PumpToFlowcell start
17-03-17 17:15:11.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:15:11.308 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 17:15:11.308 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 8 to 12. Moving 4 positions.
17-03-17 17:15:11.308 -07 000000610 INF: ReagentValve: Xmit +0C\r
17-03-17 17:15:11.478 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:11.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:15:11.668 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:15:11.688 -07 000000610 INF: ReagentValve: Recv 032F\r
17-03-17 17:15:11.688 -07 000000610 INF: ReagentValve: Move+ from 8 to 12 took 815 steps, expected 817. Error = -2 steps (-0.2%)
17-03-17 17:15:11.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:15:11.758 -07 000000610 INF: ReagentValve: Recv 0C\r
17-03-17 17:15:11.758 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:15:11.858 -07 000000610 INF: =================== Pumping Reagent HP10 (12) ===================
17-03-17 17:15:11.858 -07 000000610 INF: LanePump: Pumping from 12, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 17:15:11.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:11.888 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 17:15:11.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 17:15:12.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:12.048 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 17:15:12.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 17:15:13.378 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.133611,
17-03-17 17:15:16.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:16.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:16.248 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 17:15:16.378 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 17:15:16.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:16.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:15:16.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:16.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:16.868 -07 000000610 INF: LanePump: Waited 458 ms for pump motion to complete
17-03-17 17:15:16.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:17.028 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 17:15:17.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 17:15:17.158 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 17:15:17.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:18.738 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.115961,
17-03-17 17:15:21.478 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:21.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:15:23.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:23.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:23.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:23.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:24.098 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.121402,
17-03-17 17:15:24.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:24.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:24.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:24.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:25.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:25.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:25.288 -07 000000610 INF: LanePump: Waited 8099 ms for pump motion to complete
17-03-17 17:15:25.288 -07 000000610 INF: =================== Pumping Reagent HP10 (12), Aspirating port InputPort ===================
17-03-17 17:15:25.418 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 17:15:25.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:26.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:26.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=23, R2=28, Total=51. Warn if over 250 bubbles per interval.
17-03-17 17:15:29.458 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.103754,
17-03-17 17:15:31.478 -07 000000417 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 17:15:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=24, R2=29, Total=53. Warn if over 250 bubbles per interval.
17-03-17 17:15:32.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:32.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:33.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:33.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:33.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:33.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:34.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:34.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:34.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:34.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:34.818 -07 000000417 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.152623,
17-03-17 17:15:35.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:35.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:35.158 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 17:15:35.158 -07 000000610 INF: =================== Pumping Reagent HP10 (12) ===================
17-03-17 17:15:35.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:35.318 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:15:35.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:15:35.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:35.478 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:15:35.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:15:35.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:15:35.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:15:35.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:36.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:36.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:36.098 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:15:36.098 -07 000000610 INF: ===================  ===================
17-03-17 17:15:36.098 -07 000000610 INF: =================== Pumping Reagent HP10 (12) ===================
17-03-17 17:15:36.098 -07 000000610 INF: LanePump: Pumping from 12, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 75 µL, calling command Pumping to Flow Cell #1
17-03-17 17:15:36.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:36.258 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 17:15:36.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 17:15:36.258 -07 000000610 INF: =================== Pumping Reagent HP10 (12), Aspirating port InputPort ===================
17-03-17 17:15:36.388 -07 000000610 INF: LanePump: Xmit /1V50IP450R\r
17-03-17 17:15:36.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:36.478 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 17:15:36.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=26, R2=30, Total=56. Warn if over 250 bubbles per interval.
17-03-17 17:15:40.178 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.143135,
17-03-17 17:15:41.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 17:15:41.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=26, R2=31, Total=57. Warn if over 250 bubbles per interval.
17-03-17 17:15:45.538 -07 000000417 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.134971,
17-03-17 17:15:46.478 -07 000000417 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:46.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=26, R2=31, Total=57. Warn if over 250 bubbles per interval.
17-03-17 17:15:50.898 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.136332,
17-03-17 17:15:51.478 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 17:15:51.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:15:52.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:52.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:53.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:53.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:53.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:53.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:54.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:54.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:54.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:54.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:55.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:55.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:15:55.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:55.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:55.578 -07 000000610 INF: LanePump: Waited 19149 ms for pump motion to complete
17-03-17 17:15:55.578 -07 000000610 INF: =================== Pumping Reagent HP10 (12) ===================
17-03-17 17:15:55.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:55.738 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 17:15:55.738 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 17:15:55.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:15:55.898 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 17:15:55.898 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 17:15:55.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:15:56.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:15:56.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:56.258 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.121402,
17-03-17 17:15:56.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:15:56.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:15:56.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:15:56.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:15:56.518 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:15:56.518 -07 000000610 INF: ===================  ===================
17-03-17 17:15:56.518 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 17:15:56.518 -07 000000610 INF: =================== Flow Cell Temp 40°, FC temperature to 40° ===================
17-03-17 17:15:56.518 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 40000000\n [FlowCellTempControl]
17-03-17 17:15:56.518 -07 000000627 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:15:56.528 -07 000000610 INF: FPGA: 'TEC2TEMP 0 40000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:15:56.528 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:15:56.528 -07 000000417 INF: FPGA: Recv TEC2EN 
17-03-17 17:15:56.538 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:15:56.538 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 17:15:56.538 -07 000000610 INF: WaitCommand(60000) start
17-03-17 17:16:01.478 -07 000000417 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:01.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:01.618 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.118681,
17-03-17 17:16:06.478 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:06.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:06.978 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.121402,
17-03-17 17:16:11.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:11.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:12.338 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.111916,
17-03-17 17:16:16.478 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:17.698 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.147181,
17-03-17 17:16:21.478 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:21.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:23.058 -07 000000471 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.109195,
17-03-17 17:16:26.478 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:26.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:28.418 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.129565,
17-03-17 17:16:31.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:33.778 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.107835,
17-03-17 17:16:36.478 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:36.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:39.138 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.094233,
17-03-17 17:16:41.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:41.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:44.498 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.106475,
17-03-17 17:16:46.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:46.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:49.858 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.083353,
17-03-17 17:16:51.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:51.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:55.218 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.091548,
17-03-17 17:16:56.478 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:16:56.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:16:56.548 -07 000000610 INF: WaitCommand(60000) end
17-03-17 17:16:56.548 -07 000000610 INF: ===================  ===================
17-03-17 17:16:56.548 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 17:16:56.548 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:16:56.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:16:56.568 -07 000000610 INF: ReagentValve: Recv 0C\r
17-03-17 17:16:56.568 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 12 to 3. Moving 9 positions.
17-03-17 17:16:56.568 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:16:57.328 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:16:57.348 -07 000000610 INF: ReagentValve: Recv 0742\r
17-03-17 17:16:57.348 -07 000000610 INF: ReagentValve: Move- from 12 to 3 took 1858 steps, expected 1838. Error = 20 steps (1.1%)
17-03-17 17:16:57.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:16:57.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:16:57.418 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:16:57.518 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 17:16:57.518 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:16:57.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:16:57.678 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 17:16:57.678 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 17:16:57.678 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:16:57.808 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:16:57.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:00.578 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.107835,
17-03-17 17:17:00.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:01.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:01.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:01.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:01.478 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:01.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:01.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:01.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:01.908 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:17:01.908 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 17:17:02.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:02.068 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n
17-03-17 17:17:02.068 -07 000000610 INF: LanePump: Current Position of Pump is: 2970
17-03-17 17:17:02.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:02.228 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n
17-03-17 17:17:02.228 -07 000000610 INF: LanePump: Current Position of Pump is: 2970
17-03-17 17:17:02.228 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:17:02.358 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:17:02.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:02.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:02.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:02.848 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:17:02.848 -07 000000610 INF: ===================  ===================
17-03-17 17:17:02.848 -07 000000610 INF: =================== FC temp control off ===================
17-03-17 17:17:02.848 -07 000000610 INF: FPGA: Xmit TEC2EN 0 0\n [FlowCellTempControl]
17-03-17 17:17:02.848 -07 000000474 INF: FPGA: Recv TEC2EN 
17-03-17 17:17:02.858 -07 000000610 INF: FPGA: 'TEC2EN 0 0' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:17:02.858 -07 000000610 INF: ===================  ===================
17-03-17 17:17:02.858 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:17:02.868 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:17:02.868 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 75.3774 mm, delta = 0.0031 mm
17-03-17 17:17:02.868 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:17:02.868 -07 000000474 INF: FPGA: Recv YRDPOS 154373
17-03-17 17:17:02.878 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:17:02.878 -07 000000610 INF: Y Motor: Encoder = 154373 = motor step 120603.9 = 75.3774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:17:02.878 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-17 17:17:02.878 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:17:02.878 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:17:02.908 -07 000000474 INF: FPGA: Recv YMVTO 154379 10
17-03-17 17:17:02.908 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 27 ms to get response, and 37 ms overall
17-03-17 17:17:02.908 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-17 17:17:02.908 -07 000000610 INF: Y Motor: To move from 75.377 to 75.381 (0.003 mm) should take 5 steps, but required 10 steps (0.006 mm). Slippage = 0.003 mm (1.00%).
17-03-17 17:17:02.908 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 37 ms, distance = 0.003 mm, average velocity = 0.085 mm/sec
17-03-17 17:17:05.908 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:17:05.908 -07 000000474 INF: FPGA: Recv YRDPOS 154385
17-03-17 17:17:05.918 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:17:05.918 -07 000000610 INF: Y Motor: Encoder = 154385 = motor step 120613.3 = 75.3833 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:17:05.918 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.002721, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:17:05.918 -07 000000610 INF: Y Motor: Position error after settling = 6 encoder counts (0.003 mm), Delta during settling = 6 counts (0.003 mm)
17-03-17 17:17:05.918 -07 000000610 INF: Y Motor: Moved to 75.3833 after 3051 ms
17-03-17 17:17:05.918 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 60° ===================
17-03-17 17:17:05.928 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 17:17:05.938 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 17:17:05.938 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.107835,
17-03-17 17:17:05.938 -07 000000474 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:17:05.948 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:17:05.958 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:17:05.958 -07 000000474 INF: FPGA: Recv TEC2EN 
17-03-17 17:17:05.968 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:17:05.968 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 60° ===================
17-03-17 17:17:05.968 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:17:05.968 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:17:05.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:17:05.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:06.008 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n
17-03-17 17:17:06.008 -07 000000610 INF: LanePump: Current Position of Pump is: 2970
17-03-17 17:17:06.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:06.168 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n
17-03-17 17:17:06.168 -07 000000610 INF: LanePump: Current Position of Pump is: 2970
17-03-17 17:17:06.478 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:06.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:10.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:10.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:10.368 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 17:17:10.498 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 17:17:10.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:10.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:10.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:10.988 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:17:11.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:11.148 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n
17-03-17 17:17:11.148 -07 000000610 INF: LanePump: Current Position of Pump is: 2970
17-03-17 17:17:11.278 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 17:17:11.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:11.318 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.088793,
17-03-17 17:17:11.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:11.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:16.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:16.678 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.087432,
17-03-17 17:17:21.478 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:21.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:21.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:21.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:22.038 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.130926,
17-03-17 17:17:22.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:22.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:22.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:22.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:22.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:22.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:23.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:23.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:23.448 -07 000000610 INF: LanePump: Waited 12129 ms for pump motion to complete
17-03-17 17:17:23.448 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:17:23.578 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:17:23.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:26.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:26.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:26.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:26.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:27.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:27.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:27.398 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.129565,
17-03-17 17:17:27.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:27.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:27.678 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:17:27.678 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:17:27.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:27.838 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:17:27.838 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:17:27.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:27.998 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:17:27.998 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:17:27.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:17:28.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:17:28.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:28.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:28.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:28.618 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:17:28.618 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:17:29.838 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:17:29.838 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:17:29.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:17:29.858 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:17:29.858 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:17:29.858 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:17:30.068 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:17:30.088 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:17:30.088 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:17:30.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:17:30.158 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:17:30.158 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:17:30.258 -07 000000610 INF: =================== Cycle #1, Pumping Reagent IMT (1) ===================
17-03-17 17:17:30.258 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:17:30.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:30.288 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:17:30.288 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:17:30.288 -07 000000610 INF: =================== Cycle #1, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:17:30.418 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:17:30.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:31.478 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:31.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:31.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:31.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:32.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:32.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:32.378 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:17:32.378 -07 000000610 INF: =================== Cycle #1, Pumping Reagent IMT (1) ===================
17-03-17 17:17:32.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:32.538 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:17:32.538 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:17:32.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:32.698 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:17:32.698 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:17:32.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:17:32.758 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.109195,
17-03-17 17:17:32.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:17:32.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:33.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:33.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:33.318 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:17:33.318 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:17:34.538 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:17:34.538 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:17:34.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:17:34.558 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:17:34.558 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 17:17:34.558 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:17:34.788 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:17:34.808 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 17:17:34.808 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 17:17:34.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:17:34.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:17:34.878 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:17:34.978 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:17:34.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:17:34.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:35.008 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:17:35.008 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:17:35.008 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:17:35.138 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:17:35.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:17:36.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:36.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:36.078 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:17:36.078 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:17:36.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:36.238 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:17:36.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:17:36.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:17:36.398 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:17:36.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:17:36.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:17:36.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:36.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:36.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:17:36.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:36.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:17:37.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:17:37.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:17:37.018 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:17:37.018 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 65° ===================
17-03-17 17:17:37.018 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:17:37.018 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:17:37.018 -07 000000627 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:17:37.028 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:17:37.028 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:17:37.028 -07 000000471 INF: FPGA: Recv TEC2EN 
17-03-17 17:17:37.038 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:17:37.038 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 65° ===================
17-03-17 17:17:37.038 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:17:37.038 -07 000000610 INF: WaitCommand(30000) start
17-03-17 17:17:38.118 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.086108,
17-03-17 17:17:41.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:41.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:43.478 -07 000000471 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.086108,
17-03-17 17:17:46.478 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:46.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:48.838 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:17:51.488 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:51.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:17:54.758 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.111916,
17-03-17 17:17:56.488 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:17:56.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:00.118 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.102394,
17-03-17 17:18:01.488 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:01.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:05.478 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.101034,
17-03-17 17:18:06.488 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:06.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:07.048 -07 000000610 INF: WaitCommand(30000) end
17-03-17 17:18:07.048 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:18:07.048 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 17:18:07.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:18:07.178 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:18:07.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:18:07.178 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:18:07.308 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 17:18:07.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:18:07.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:18:07.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:18:07.918 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 17:18:07.918 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:18:08.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:18:08.078 -07 000000610 INF: LanePump: Recv /0`1140(0x03)\r\n
17-03-17 17:18:08.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1140
17-03-17 17:18:08.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:18:08.238 -07 000000610 INF: LanePump: Recv /0`1140(0x03)\r\n
17-03-17 17:18:08.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1140
17-03-17 17:18:08.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:18:08.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:18:08.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:18:08.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:18:08.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:18:08.858 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:18:08.858 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:18:08.858 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:18:08.858 -07 000000541 INF: WaitCommand(30000) start
17-03-17 17:18:08.858 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:18:10.078 -07 000000627 INF: AsyncDelayTimer waited 1215ms
17-03-17 17:18:10.078 -07 000000627 INF: LanePump: Xmit /1?\r
17-03-17 17:18:10.108 -07 000000627 INF: LanePump: Recv /0`1140(0x03)\r\n
17-03-17 17:18:10.108 -07 000000627 INF: LanePump: Current Position of Pump is: 1140
17-03-17 17:18:10.238 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:18:10.278 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:18:11.528 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:11.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:11.528 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.111916,
17-03-17 17:18:11.838 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 17:18:11.868 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:18:12.288 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 17:18:12.318 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:18:12.318 -07 000000627 INF: LanePump: Waited 2039 ms for pump motion to complete
17-03-17 17:18:12.318 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:18:12.318 -07 000000627 INF: ===================  ===================
17-03-17 17:18:16.488 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:16.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:16.888 -07 000000471 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.098313,
17-03-17 17:18:21.488 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:21.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:22.248 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.118681,
17-03-17 17:18:26.488 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:26.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:27.608 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.11052,
17-03-17 17:18:31.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:31.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:32.968 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.088793,
17-03-17 17:18:36.488 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:36.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:38.328 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.081993,
17-03-17 17:18:38.868 -07 000000541 INF: WaitCommand(30000) end
17-03-17 17:18:38.868 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 22° ===================
17-03-17 17:18:38.868 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 17:18:38.868 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 17:18:38.868 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:18:38.878 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:18:38.878 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:18:38.878 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 17:18:38.888 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:18:38.888 -07 000000610 INF: =================== Cycle #1, Flow Cell Temp 22° ===================
17-03-17 17:18:38.888 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:18:38.888 -07 000000610 INF: WaitCommand(60000) start
17-03-17 17:18:41.488 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:41.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:43.688 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.077912,
17-03-17 17:18:46.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:46.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:49.048 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.084713,
17-03-17 17:18:51.488 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:51.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:54.408 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.098313,
17-03-17 17:18:56.488 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:18:56.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:18:59.768 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.076552,
17-03-17 17:19:01.488 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:01.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:06.088 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.101034,
17-03-17 17:19:06.488 -07 000000471 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:06.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:11.458 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.109195,
17-03-17 17:19:11.488 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:11.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:16.488 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:16.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:16.828 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.103754,
17-03-17 17:19:21.488 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:21.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:22.198 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.092873,
17-03-17 17:19:26.488 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:26.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:27.568 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.103754,
17-03-17 17:19:31.488 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:31.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:32.938 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.095593,
17-03-17 17:19:36.488 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:36.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:38.898 -07 000000610 INF: WaitCommand(60000) end
17-03-17 17:19:38.898 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:19:38.898 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:19:38.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:38.928 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:19:38.928 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:19:38.928 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:19:39.058 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:19:39.078 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.090153,
17-03-17 17:19:39.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:41.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:41.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:42.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:42.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:42.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:42.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:43.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:43.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:43.158 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:19:43.158 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:19:43.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:43.318 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:19:43.318 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:19:43.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:43.478 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:19:43.478 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:19:43.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:19:43.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:19:43.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:44.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:44.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:44.098 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:19:44.098 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:19:44.438 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.075228,
17-03-17 17:19:45.318 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:19:45.318 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 17:19:45.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:19:45.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:19:45.338 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 17:19:45.338 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 17:19:45.488 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:19:45.508 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-17 17:19:45.508 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-17 17:19:45.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:19:45.578 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:19:45.578 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:19:45.678 -07 000000610 INF: =================== Cycle #1, Pumping Reagent USM (2) ===================
17-03-17 17:19:45.678 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:19:45.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:45.708 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:19:45.708 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:19:45.708 -07 000000610 INF: =================== Cycle #1, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 17:19:45.838 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:19:45.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:46.488 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:46.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:47.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:47.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:47.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:47.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:47.798 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:19:47.798 -07 000000610 INF: =================== Cycle #1, Pumping Reagent USM (2) ===================
17-03-17 17:19:47.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:47.958 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:19:47.958 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:19:48.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:48.118 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:19:48.118 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:19:48.118 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:19:48.248 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:19:48.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:48.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:48.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:48.738 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:19:48.738 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:19:49.808 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:19:49.958 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:19:49.958 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:19:49.958 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:19:49.978 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:19:49.978 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 17:19:49.978 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:19:50.128 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:19:50.148 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-17 17:19:50.148 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-17 17:19:50.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:19:50.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:19:50.218 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:19:50.318 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:19:50.318 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:19:50.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:50.348 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:19:50.348 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:19:50.348 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:19:50.478 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:19:50.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:51.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:51.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:51.418 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:19:51.418 -07 000000610 INF: =================== Cycle #1, Pumping Reagent PR2 (3) ===================
17-03-17 17:19:51.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:51.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:19:51.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:51.578 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:19:51.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:19:51.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:19:51.738 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:19:51.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:19:51.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:19:51.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:19:51.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:52.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:52.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:52.358 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:19:52.358 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:19:52.358 -07 000000627 INF: WaitCommand(10000) start
17-03-17 17:19:52.358 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:19:52.358 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:19:53.578 -07 000000561 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:19:53.578 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-17 17:19:53.608 -07 000000561 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:19:53.608 -07 000000561 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:19:53.738 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:19:53.778 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:55.178 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.069789,
17-03-17 17:19:55.308 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:55.338 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:19:55.758 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-17 17:19:55.788 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:19:55.788 -07 000000561 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:19:55.788 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:19:55.788 -07 000000561 INF: ===================  ===================
17-03-17 17:19:56.488 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:19:56.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:00.548 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.090153,
17-03-17 17:20:01.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:01.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:02.368 -07 000000627 INF: WaitCommand(10000) end
17-03-17 17:20:02.368 -07 000000610 INF: =================== Cycle #1, Imaging ===================
17-03-17 17:20:02.368 -07 000000610 INF: Imaging Cycle 1: ScanTilesCommand Cycle 1 time start.
17-03-17 17:20:02.368 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 17:20:02.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:20:02.398 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:20:02.398 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 17:20:02.398 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 17:20:02.698 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:20:02.718 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:20:02.718 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:20:02.768 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:20:02.788 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:20:02.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:02.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:02.788 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 17:20:02.788 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:02.788 -07 000000627 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 17:20:02.788 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95857 steps, sync = True, waitForSettling = True)
17-03-17 17:20:02.788 -07 000000431 INF: Y Motor: Moving to 59.9105 mm, started at 75.3833 mm, delta = -15.4728 mm
17-03-17 17:20:02.798 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:20:02.798 -07 000000632 INF: FPGA: Recv EXLED1ON 
17-03-17 17:20:02.798 -07 000000627 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:20:02.798 -07 000000569 INF: FPGA: Recv YRDPOS 154385
17-03-17 17:20:02.808 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 17:20:02.808 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:20:02.808 -07 000000431 INF: Y Motor: Encoder = 154385 = motor step 120613.3 = 75.3833 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:20:02.808 -07 000000431 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4701 mm (-24752.2 steps). UsingTableMove = False
17-03-17 17:20:02.808 -07 000000431 INF: Y Motor: Moving to 122697 encoder counts
17-03-17 17:20:02.808 -07 000000382 INF: FPGA: Recv EXLED1ADCR 22966
17-03-17 17:20:02.818 -07 000000431 INF: FPGA: Xmit YMVTO 122697\n [Y Motor]
17-03-17 17:20:02.818 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:20:02.818 -07 000000627 INF: RedLED: Using Red data: Photodiode ADC 22966 --> 7.4 mW (old method), or 203.7 mW (new method). Difference = 196.3 mW
17-03-17 17:20:02.828 -07 000000627 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 17:20:02.828 -07 000000632 INF: FPGA: Recv EXLED1OFF 
17-03-17 17:20:02.838 -07 000000627 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:20:02.838 -07 000000627 INF: RedLED: LED was on for 39 ms
17-03-17 17:20:02.838 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 43 ms.
17-03-17 17:20:02.838 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 17:20:02.838 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:02.838 -07 000000627 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 17:20:03.578 -07 000000480 INF: FPGA: Recv EXLED2ON 
17-03-17 17:20:03.578 -07 000000627 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 730 ms to get response, and 738 ms overall
17-03-17 17:20:03.578 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:20:03.578 -07 000000382 INF: FPGA: Recv EXLED1ADCR 2085
17-03-17 17:20:03.588 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:03.588 -07 000000627 INF: GreenLED: Using Green data: Photodiode ADC 2085 --> 0.9 mW (old method), or 181.3 mW (new method). Difference = 180.4 mW
17-03-17 17:20:03.588 -07 000000627 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 17:20:03.588 -07 000000541 INF: FPGA: Recv EXLED2OFF 
17-03-17 17:20:03.598 -07 000000627 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:03.598 -07 000000627 INF: GreenLED: LED was on for 19 ms
17-03-17 17:20:03.598 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 758 ms.
17-03-17 17:20:04.498 -07 000000382 INF: FPGA: Recv YMVTO 122698 24785
17-03-17 17:20:04.498 -07 000000431 INF: FPGA: 'YMVTO 122697' command took 0 ms to send, 1676 ms to get response, and 1696 ms overall
17-03-17 17:20:04.498 -07 000000431 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:20:04.498 -07 000000431 INF: Y Motor: To move from 75.383 to 59.910 (-15.473 mm) should take 24756 steps, but required 24785 steps (15.491 mm). Slippage = 0.018 mm (0.00%).
17-03-17 17:20:04.498 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122697' took 1696 ms, distance = 15.473 mm, average velocity = 9.123 mm/sec
17-03-17 17:20:05.918 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:20:06.488 -07 000000632 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:06.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:07.498 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:20:07.498 -07 000000541 INF: FPGA: Recv YRDPOS 122692
17-03-17 17:20:07.508 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:07.508 -07 000000431 INF: Y Motor: Encoder = 122692 = motor step 95853.1 = 59.9082 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:20:07.518 -07 000000431 INF: Y Motor: After move to 59.910480, error = -0.002277, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:20:07.518 -07 000000431 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 17:20:07.518 -07 000000431 INF: Y Motor: Moved to 59.9082 after 4731 ms
17-03-17 17:20:07.528 -07 000000431 INF: RedLED: Snapping RedLED at default power for ~0 ms start.
17-03-17 17:20:07.528 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:07.528 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:07.528 -07 000000431 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 17:20:07.528 -07 000000382 INF: FPGA: Recv EXLED1ON 
17-03-17 17:20:07.538 -07 000000431 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:20:07.538 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 17:20:07.538 -07 000000632 INF: FPGA: Recv EXLED1ADCR 23018
17-03-17 17:20:07.548 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:07.548 -07 000000431 INF: RedLED: Using Red data: Photodiode ADC 23018 --> 7.4 mW (old method), or 204.1 mW (new method). Difference = 196.7 mW
17-03-17 17:20:07.548 -07 000000431 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 17:20:07.548 -07 000000480 INF: FPGA: Recv EXLED1OFF 
17-03-17 17:20:07.558 -07 000000431 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:07.558 -07 000000431 INF: RedLED: LED was on for 19 ms
17-03-17 17:20:07.558 -07 000000431 INF: RedLED: Snapping RedLED at default power for ~0 ms end. Duration was 28 ms.
17-03-17 17:20:07.558 -07 000000431 INF: GreenLED: Snapping GreenLED at default power for ~0 ms start.
17-03-17 17:20:07.558 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:07.558 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:07.558 -07 000000431 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 17:20:07.558 -07 000000382 INF: FPGA: Recv EXLED2ON 
17-03-17 17:20:07.568 -07 000000431 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:20:07.568 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:20:07.568 -07 000000632 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 17:20:07.578 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:07.578 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 17:20:07.578 -07 000000431 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 17:20:07.578 -07 000000502 INF: FPGA: Recv EXLED2OFF 
17-03-17 17:20:07.588 -07 000000431 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:07.588 -07 000000431 INF: GreenLED: LED was on for 20 ms
17-03-17 17:20:07.588 -07 000000431 INF: GreenLED: Snapping GreenLED at default power for ~0 ms end. Duration was 28 ms.
17-03-17 17:20:07.588 -07 000000431 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:20:07.588 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 17:20:07.598 -07 000000431 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:07.598 -07 000000431 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 17:20:08.098 -07 000000541 INF: FPGA: Recv EMOUT
17-03-17 17:20:08.098 -07 000000431 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:20:08.098 -07 000000431 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 17:20:08.098 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 17:20:08.108 -07 000000431 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:08.108 -07 000000431 INF: ----- Focus Model Scan: Starting Coarse Focus on tile 1. ------
17-03-17 17:20:08.108 -07 000000431 INF: =================== Performing CoarseFocus. ===================
17-03-17 17:20:08.108 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:20:08.108 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:20:08.118 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:20:08.118 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:20:08.318 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:20:08.318 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:20:08.318 -07 000000431 INF: Scanning Z-Position: -0.213747
17-03-17 17:20:08.318 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 46693, sync = True, waitForSettling = True)
17-03-17 17:20:08.318 -07 000000431 INF: Z Motor: Moving to -0.213747 mm, started at -0.005015 mm, distance = -208.73 um
17-03-17 17:20:08.318 -07 000000431 INF: FPGA: Xmit ZDACW 46693\n [Z Motor]
17-03-17 17:20:08.328 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:20:08.328 -07 000000431 INF: FPGA: 'ZDACW 46693' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 17:20:08.328 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:08.328 -07 000000480 INF: FPGA: Recv ZDACR 46693
17-03-17 17:20:08.338 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:20:08.338 -07 000000431 INF: Z Motor: Waiting 500 ms for long move > 40 um
17-03-17 17:20:08.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.838 -07 000000541 INF: FPGA: Recv ZSGSRD 42556
17-03-17 17:20:08.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:08.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.848 -07 000000627 INF: FPGA: Recv ZSGSRD 42567
17-03-17 17:20:08.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.858 -07 000000502 INF: FPGA: Recv ZSGSRD 42563
17-03-17 17:20:08.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.868 -07 000000561 INF: FPGA: Recv ZSGSRD 42563
17-03-17 17:20:08.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.878 -07 000000632 INF: FPGA: Recv ZSGSRD 42560
17-03-17 17:20:08.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.888 -07 000000382 INF: FPGA: Recv ZSGSRD 42558
17-03-17 17:20:08.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.898 -07 000000561 INF: FPGA: Recv ZSGSRD 42561
17-03-17 17:20:08.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.908 -07 000000480 INF: FPGA: Recv ZSGSRD 42559
17-03-17 17:20:08.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.918 -07 000000632 INF: FPGA: Recv ZSGSRD 42561
17-03-17 17:20:08.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:08.928 -07 000000382 INF: FPGA: Recv ZSGSRD 42560
17-03-17 17:20:08.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:08.938 -07 000000561 INF: FPGA: Recv ZPIEZORD 38456
17-03-17 17:20:08.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:08.948 -07 000000431 INF: Z Motor: Piezo is near 62.2 V (nominally 0 to 100 V), expect near 71.2 V, since DAC is at 7.125 V. Piezo Error = -9.1 V.
17-03-17 17:20:08.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -213.7 um, Read 10 ADC samples: Avg = 42561 (-212.8 uncal um), Error = 1.0 uncal um, Median = 42560 (-212.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 42556 (-212.7 uncal um), Max = 42567 (-212.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:08.948 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 42561, posNoise = 6, negNoise = 5
17-03-17 17:20:08.948 -07 000000431 INF: Z Motor: After move to -0.213747, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:08.948 -07 000000431 INF: Z Motor: MoveAbsStepped took 625 ms)
17-03-17 17:20:08.948 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:08.948 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:08.948 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:08.948 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:08.948 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:08.948 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:08.958 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:08.958 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:20:08.978 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 17:20:08.978 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:08.978 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:08.978 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:08.988 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:08.988 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 39 ms.
17-03-17 17:20:08.998 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:09.198 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:09.398 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:09.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:09.398 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:09.398 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:20:09.588 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:09.588 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:09.588 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall
17-03-17 17:20:09.988 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:20:09.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:09.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:09.988 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:20:10.088 -07 000000431 INF: Using center-column region for through-focus analysis: Row=512; Col=2048
17-03-17 17:20:10.088 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:10.098 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:10.108 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.53]
17-03-17 17:20:10.108 -07 000000431 INF: Scanning Z-Position: -0.211747
17-03-17 17:20:10.108 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 46256, sync = True, waitForSettling = True)
17-03-17 17:20:10.108 -07 000000431 INF: Z Motor: Moving to -0.211746 mm, started at -0.213744 mm, distance = 2.00 um
17-03-17 17:20:10.108 -07 000000431 INF: FPGA: Xmit ZDACW 46256\n [Z Motor]
17-03-17 17:20:10.108 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:20:10.118 -07 000000431 INF: FPGA: 'ZDACW 46256' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:10.118 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:10.118 -07 000000561 INF: FPGA: Recv ZDACR 46256
17-03-17 17:20:10.128 -07 000000431 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.128 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:10.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.278 -07 000000632 INF: FPGA: Recv ZSGSRD 42248
17-03-17 17:20:10.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:10.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.288 -07 000000541 INF: FPGA: Recv ZSGSRD 42254
17-03-17 17:20:10.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.298 -07 000000382 INF: FPGA: Recv ZSGSRD 42250
17-03-17 17:20:10.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.308 -07 000000632 INF: FPGA: Recv ZSGSRD 42248
17-03-17 17:20:10.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.318 -07 000000627 INF: FPGA: Recv ZSGSRD 42253
17-03-17 17:20:10.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.328 -07 000000632 INF: FPGA: Recv ZSGSRD 42247
17-03-17 17:20:10.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.338 -07 000000480 INF: FPGA: Recv ZSGSRD 42247
17-03-17 17:20:10.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.348 -07 000000632 INF: FPGA: Recv ZSGSRD 42250
17-03-17 17:20:10.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.358 -07 000000480 INF: FPGA: Recv ZSGSRD 42248
17-03-17 17:20:10.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:10.368 -07 000000382 INF: FPGA: Recv ZSGSRD 42250
17-03-17 17:20:10.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.378 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:10.378 -07 000000480 INF: FPGA: Recv ZPIEZORD 37910
17-03-17 17:20:10.388 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:10.388 -07 000000431 INF: Z Motor: Piezo is near 61.0 V (nominally 0 to 100 V), expect near 70.6 V, since DAC is at 7.058 V. Piezo Error = -9.6 V.
17-03-17 17:20:10.388 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -211.7 um, Read 10 ADC samples: Avg = 42250 (-210.8 uncal um), Error = 1.0 uncal um, Median = 42249 (-210.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 42247 (-210.8 uncal um), Max = 42254 (-210.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:20:10.388 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 42250, posNoise = 4, negNoise = 3
17-03-17 17:20:10.388 -07 000000431 INF: Z Motor: After move to -0.211746, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:10.388 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:10.388 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:10.388 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:10.388 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:10.388 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:10.388 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:10.388 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:10.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:10.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:10.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:10.398 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:10.408 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:10.408 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:10.408 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:10.608 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:10.808 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:10.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:10.808 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:10.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1202376360, 0x0, 314322768) start.
17-03-17 17:20:10.998 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:10.998 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:10.998 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:20:11.288 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.075228,
17-03-17 17:20:11.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1202376360, 0x0, 314322768) end. Duration was 579 ms.
17-03-17 17:20:11.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:11.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:11.398 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:20:11.488 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:11.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:11.498 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:11.508 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:11.518 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.24]
17-03-17 17:20:11.518 -07 000000431 INF: Scanning Z-Position: -0.209747
17-03-17 17:20:11.518 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 45819, sync = True, waitForSettling = True)
17-03-17 17:20:11.518 -07 000000431 INF: Z Motor: Moving to -0.209746 mm, started at -0.211746 mm, distance = 2.00 um
17-03-17 17:20:11.518 -07 000000431 INF: FPGA: Xmit ZDACW 45819\n [Z Motor]
17-03-17 17:20:11.518 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:20:11.528 -07 000000431 INF: FPGA: 'ZDACW 45819' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:11.528 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:11.528 -07 000000382 INF: FPGA: Recv ZDACR 45819
17-03-17 17:20:11.538 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.538 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:11.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.688 -07 000000541 INF: FPGA: Recv ZSGSRD 41935
17-03-17 17:20:11.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.698 -07 000000627 INF: FPGA: Recv ZSGSRD 41937
17-03-17 17:20:11.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.708 -07 000000502 INF: FPGA: Recv ZSGSRD 41938
17-03-17 17:20:11.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.718 -07 000000480 INF: FPGA: Recv ZSGSRD 41944
17-03-17 17:20:11.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.728 -07 000000502 INF: FPGA: Recv ZSGSRD 41942
17-03-17 17:20:11.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.738 -07 000000502 INF: FPGA: Recv ZSGSRD 41941
17-03-17 17:20:11.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.748 -07 000000480 INF: FPGA: Recv ZSGSRD 41941
17-03-17 17:20:11.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.758 -07 000000502 INF: FPGA: Recv ZSGSRD 41940
17-03-17 17:20:11.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.768 -07 000000480 INF: FPGA: Recv ZSGSRD 41942
17-03-17 17:20:11.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:11.778 -07 000000502 INF: FPGA: Recv ZSGSRD 41939
17-03-17 17:20:11.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.788 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:11.788 -07 000000433 INF: FPGA: Recv ZPIEZORD 37433
17-03-17 17:20:11.798 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:11.798 -07 000000431 INF: Z Motor: Piezo is near 60.0 V (nominally 0 to 100 V), expect near 69.9 V, since DAC is at 6.992 V. Piezo Error = -9.9 V.
17-03-17 17:20:11.798 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -209.7 um, Read 10 ADC samples: Avg = 41940 (-208.8 uncal um), Error = 1.0 uncal um, Median = 41940 (-208.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 41935 (-208.8 uncal um), Max = 41944 (-208.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:11.798 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41940, posNoise = 4, negNoise = 5
17-03-17 17:20:11.798 -07 000000431 INF: Z Motor: After move to -0.209746, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:11.798 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:11.798 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:11.798 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:11.798 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:11.798 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:11.798 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:11.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:11.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:20:11.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:11.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:11.808 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:11.818 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:11.818 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:20:11.818 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:12.018 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:12.218 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:12.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:12.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:12.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:20:12.408 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:12.408 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:12.408 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 589 ms to get response, and 591 ms overall
17-03-17 17:20:12.808 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:12.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:12.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:12.808 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:13.008 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:13.018 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:13.028 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.42]
17-03-17 17:20:13.028 -07 000000431 INF: Scanning Z-Position: -0.207747
17-03-17 17:20:13.028 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 45382, sync = True, waitForSettling = True)
17-03-17 17:20:13.028 -07 000000431 INF: Z Motor: Moving to -0.207745 mm, started at -0.209755 mm, distance = 2.01 um
17-03-17 17:20:13.028 -07 000000431 INF: FPGA: Xmit ZDACW 45382\n [Z Motor]
17-03-17 17:20:13.028 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:20:13.038 -07 000000431 INF: FPGA: 'ZDACW 45382' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:20:13.038 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:13.038 -07 000000541 INF: FPGA: Recv ZDACR 45382
17-03-17 17:20:13.048 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.048 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:13.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.198 -07 000000480 INF: FPGA: Recv ZSGSRD 41621
17-03-17 17:20:13.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:13.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.208 -07 000000541 INF: FPGA: Recv ZSGSRD 41630
17-03-17 17:20:13.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.218 -07 000000480 INF: FPGA: Recv ZSGSRD 41624
17-03-17 17:20:13.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.228 -07 000000561 INF: FPGA: Recv ZSGSRD 41625
17-03-17 17:20:13.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.238 -07 000000433 INF: FPGA: Recv ZSGSRD 41619
17-03-17 17:20:13.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.248 -07 000000561 INF: FPGA: Recv ZSGSRD 41626
17-03-17 17:20:13.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.258 -07 000000502 INF: FPGA: Recv ZSGSRD 41631
17-03-17 17:20:13.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.268 -07 000000561 INF: FPGA: Recv ZSGSRD 41626
17-03-17 17:20:13.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.278 -07 000000480 INF: FPGA: Recv ZSGSRD 41626
17-03-17 17:20:13.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:13.288 -07 000000433 INF: FPGA: Recv ZSGSRD 41629
17-03-17 17:20:13.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.298 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:13.298 -07 000000627 INF: FPGA: Recv ZPIEZORD 37079
17-03-17 17:20:13.308 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:13.308 -07 000000431 INF: Z Motor: Piezo is near 59.2 V (nominally 0 to 100 V), expect near 69.2 V, since DAC is at 6.925 V. Piezo Error = -10.0 V.
17-03-17 17:20:13.308 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -207.7 um, Read 10 ADC samples: Avg = 41626 (-206.8 uncal um), Error = 1.0 uncal um, Median = 41626 (-206.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 41619 (-206.7 uncal um), Max = 41631 (-206.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:20:13.308 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41626, posNoise = 5, negNoise = 7
17-03-17 17:20:13.308 -07 000000431 INF: Z Motor: After move to -0.207745, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:13.308 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:20:13.308 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:13.308 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:13.308 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:13.308 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:13.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:13.308 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:13.318 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:13.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:13.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:13.318 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:13.328 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:13.328 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:13.328 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:13.528 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:13.728 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:13.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:13.728 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:13.728 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1112181976, 0x0, 314322768) start.
17-03-17 17:20:13.918 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:13.918 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:13.918 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:20:14.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1112181976, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:20:14.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:14.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:14.328 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:20:14.418 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:14.428 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:14.438 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.63]
17-03-17 17:20:14.438 -07 000000431 INF: Scanning Z-Position: -0.205747
17-03-17 17:20:14.438 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 44945, sync = True, waitForSettling = True)
17-03-17 17:20:14.438 -07 000000431 INF: Z Motor: Moving to -0.205745 mm, started at -0.207738 mm, distance = 1.99 um
17-03-17 17:20:14.438 -07 000000431 INF: FPGA: Xmit ZDACW 44945\n [Z Motor]
17-03-17 17:20:14.438 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:20:14.448 -07 000000431 INF: FPGA: 'ZDACW 44945' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:14.448 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:14.448 -07 000000569 INF: FPGA: Recv ZDACR 44945
17-03-17 17:20:14.458 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.458 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:14.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.608 -07 000000480 INF: FPGA: Recv ZSGSRD 41313
17-03-17 17:20:14.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:14.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.618 -07 000000502 INF: FPGA: Recv ZSGSRD 41309
17-03-17 17:20:14.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.628 -07 000000618 INF: FPGA: Recv ZSGSRD 41318
17-03-17 17:20:14.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.638 -07 000000502 INF: FPGA: Recv ZSGSRD 41314
17-03-17 17:20:14.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.648 -07 000000618 INF: FPGA: Recv ZSGSRD 41320
17-03-17 17:20:14.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.658 -07 000000502 INF: FPGA: Recv ZSGSRD 41312
17-03-17 17:20:14.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.668 -07 000000618 INF: FPGA: Recv ZSGSRD 41317
17-03-17 17:20:14.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.678 -07 000000433 INF: FPGA: Recv ZSGSRD 41320
17-03-17 17:20:14.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.688 -07 000000480 INF: FPGA: Recv ZSGSRD 41312
17-03-17 17:20:14.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:14.698 -07 000000561 INF: FPGA: Recv ZSGSRD 41319
17-03-17 17:20:14.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.708 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:14.708 -07 000000502 INF: FPGA: Recv ZPIEZORD 36652
17-03-17 17:20:14.718 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:14.718 -07 000000431 INF: Z Motor: Piezo is near 58.3 V (nominally 0 to 100 V), expect near 68.6 V, since DAC is at 6.858 V. Piezo Error = -10.3 V.
17-03-17 17:20:14.718 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -205.7 um, Read 10 ADC samples: Avg = 41315 (-204.8 uncal um), Error = 1.0 uncal um, Median = 41316 (-204.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 41309 (-204.7 uncal um), Max = 41320 (-204.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:20:14.718 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41315, posNoise = 5, negNoise = 6
17-03-17 17:20:14.718 -07 000000431 INF: Z Motor: After move to -0.205745, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:14.718 -07 000000431 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:20:14.718 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:14.718 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:14.718 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:14.718 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:14.718 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:14.728 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:14.728 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:14.728 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:14.728 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:14.728 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:14.738 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:14.738 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:14.738 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:14.938 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:15.138 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:15.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:15.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:15.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:20:15.328 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:15.328 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:15.328 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:20:15.728 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:20:15.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:15.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:15.738 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:20:15.948 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:15.958 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:15.968 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.47]
17-03-17 17:20:15.968 -07 000000431 INF: Scanning Z-Position: -0.203747
17-03-17 17:20:15.968 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 44509, sync = True, waitForSettling = True)
17-03-17 17:20:15.968 -07 000000431 INF: Z Motor: Moving to -0.203749 mm, started at -0.205740 mm, distance = 1.99 um
17-03-17 17:20:15.968 -07 000000431 INF: FPGA: Xmit ZDACW 44509\n [Z Motor]
17-03-17 17:20:15.978 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:20:15.988 -07 000000431 INF: FPGA: 'ZDACW 44509' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:15.988 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:15.988 -07 000000502 INF: FPGA: Recv ZDACR 44509
17-03-17 17:20:15.998 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:15.998 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:16.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.148 -07 000000502 INF: FPGA: Recv ZSGSRD 41004
17-03-17 17:20:16.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:16.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.158 -07 000000618 INF: FPGA: Recv ZSGSRD 41003
17-03-17 17:20:16.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.168 -07 000000561 INF: FPGA: Recv ZSGSRD 40996
17-03-17 17:20:16.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.178 -07 000000541 INF: FPGA: Recv ZSGSRD 41006
17-03-17 17:20:16.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.188 -07 000000618 INF: FPGA: Recv ZSGSRD 40995
17-03-17 17:20:16.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.198 -07 000000569 INF: FPGA: Recv ZSGSRD 41006
17-03-17 17:20:16.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.208 -07 000000433 INF: FPGA: Recv ZSGSRD 41005
17-03-17 17:20:16.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.218 -07 000000502 INF: FPGA: Recv ZSGSRD 41002
17-03-17 17:20:16.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.228 -07 000000561 INF: FPGA: Recv ZSGSRD 41000
17-03-17 17:20:16.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:16.238 -07 000000561 INF: FPGA: Recv ZSGSRD 41000
17-03-17 17:20:16.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.248 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:16.248 -07 000000541 INF: FPGA: Recv ZPIEZORD 36278
17-03-17 17:20:16.258 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:16.258 -07 000000431 INF: Z Motor: Piezo is near 57.5 V (nominally 0 to 100 V), expect near 67.9 V, since DAC is at 6.792 V. Piezo Error = -10.4 V.
17-03-17 17:20:16.258 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -203.7 um, Read 10 ADC samples: Avg = 41002 (-202.8 uncal um), Error = 1.0 uncal um, Median = 41002 (-202.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 40995 (-202.7 uncal um), Max = 41006 (-202.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:20:16.258 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41002, posNoise = 4, negNoise = 7
17-03-17 17:20:16.258 -07 000000431 INF: Z Motor: After move to -0.203749, error = 0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:16.258 -07 000000431 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:20:16.258 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:16.258 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:16.258 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:16.258 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:16.258 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:16.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:16.268 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:16.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:16.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:16.268 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:16.278 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:16.278 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:16.278 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:16.478 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:16.488 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:16.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:16.658 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.084713,
17-03-17 17:20:16.678 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:16.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:16.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:16.688 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:20:16.868 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:16.868 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:16.868 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:20:17.268 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:20:17.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:17.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:17.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:20:17.468 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:17.478 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:17.488 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.09]
17-03-17 17:20:17.488 -07 000000431 INF: Scanning Z-Position: -0.201747
17-03-17 17:20:17.488 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 44072, sync = True, waitForSettling = True)
17-03-17 17:20:17.488 -07 000000431 INF: Z Motor: Moving to -0.201749 mm, started at -0.203729 mm, distance = 1.98 um
17-03-17 17:20:17.488 -07 000000431 INF: FPGA: Xmit ZDACW 44072\n [Z Motor]
17-03-17 17:20:17.488 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:20:17.498 -07 000000431 INF: FPGA: 'ZDACW 44072' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:17.498 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:17.498 -07 000000502 INF: FPGA: Recv ZDACR 44072
17-03-17 17:20:17.508 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:20:17.508 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:17.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.658 -07 000000433 INF: FPGA: Recv ZSGSRD 40698
17-03-17 17:20:17.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:17.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.668 -07 000000632 INF: FPGA: Recv ZSGSRD 40686
17-03-17 17:20:17.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.678 -07 000000632 INF: FPGA: Recv ZSGSRD 40690
17-03-17 17:20:17.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.688 -07 000000632 INF: FPGA: Recv ZSGSRD 40688
17-03-17 17:20:17.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.698 -07 000000502 INF: FPGA: Recv ZSGSRD 40695
17-03-17 17:20:17.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.708 -07 000000627 INF: FPGA: Recv ZSGSRD 40687
17-03-17 17:20:17.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.718 -07 000000627 INF: FPGA: Recv ZSGSRD 40690
17-03-17 17:20:17.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.728 -07 000000632 INF: FPGA: Recv ZSGSRD 40696
17-03-17 17:20:17.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.738 -07 000000632 INF: FPGA: Recv ZSGSRD 40690
17-03-17 17:20:17.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:17.748 -07 000000618 INF: FPGA: Recv ZSGSRD 40691
17-03-17 17:20:17.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.758 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:17.758 -07 000000627 INF: FPGA: Recv ZPIEZORD 35904
17-03-17 17:20:17.768 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:17.768 -07 000000431 INF: Z Motor: Piezo is near 56.7 V (nominally 0 to 100 V), expect near 67.2 V, since DAC is at 6.725 V. Piezo Error = -10.5 V.
17-03-17 17:20:17.768 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -201.7 um, Read 10 ADC samples: Avg = 40691 (-200.8 uncal um), Error = 1.0 uncal um, Median = 40690 (-200.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 40686 (-200.7 uncal um), Max = 40698 (-200.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:17.768 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40691, posNoise = 7, negNoise = 5
17-03-17 17:20:17.768 -07 000000431 INF: Z Motor: After move to -0.201749, error = 0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:17.768 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:17.768 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:17.768 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:17.768 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:17.768 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:17.778 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:17.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:17.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:20:17.778 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:17.778 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:17.778 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:17.788 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:17.788 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:20:17.788 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:17.988 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:18.188 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:18.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:18.188 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:18.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:20:18.378 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:18.378 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:18.378 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:20:18.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:20:18.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:18.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:18.788 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:18.988 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:18.998 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:19.008 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.84]
17-03-17 17:20:19.008 -07 000000431 INF: Scanning Z-Position: -0.199747
17-03-17 17:20:19.008 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 43635, sync = True, waitForSettling = True)
17-03-17 17:20:19.008 -07 000000431 INF: Z Motor: Moving to -0.199748 mm, started at -0.201731 mm, distance = 1.98 um
17-03-17 17:20:19.008 -07 000000431 INF: FPGA: Xmit ZDACW 43635\n [Z Motor]
17-03-17 17:20:19.008 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:20:19.018 -07 000000431 INF: FPGA: 'ZDACW 43635' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:20:19.018 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:19.018 -07 000000627 INF: FPGA: Recv ZDACR 43635
17-03-17 17:20:19.028 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.028 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:19.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.178 -07 000000632 INF: FPGA: Recv ZSGSRD 40384
17-03-17 17:20:19.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:19.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.188 -07 000000627 INF: FPGA: Recv ZSGSRD 40380
17-03-17 17:20:19.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.198 -07 000000618 INF: FPGA: Recv ZSGSRD 40383
17-03-17 17:20:19.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.208 -07 000000627 INF: FPGA: Recv ZSGSRD 40381
17-03-17 17:20:19.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.218 -07 000000627 INF: FPGA: Recv ZSGSRD 40378
17-03-17 17:20:19.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.228 -07 000000627 INF: FPGA: Recv ZSGSRD 40381
17-03-17 17:20:19.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.238 -07 000000632 INF: FPGA: Recv ZSGSRD 40379
17-03-17 17:20:19.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.248 -07 000000627 INF: FPGA: Recv ZSGSRD 40385
17-03-17 17:20:19.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.268 -07 000000618 INF: FPGA: Recv ZSGSRD 40381
17-03-17 17:20:19.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:20:19.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:19.268 -07 000000627 INF: FPGA: Recv ZSGSRD 40381
17-03-17 17:20:19.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.278 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:19.278 -07 000000502 INF: FPGA: Recv ZPIEZORD 35521
17-03-17 17:20:19.288 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:19.288 -07 000000431 INF: Z Motor: Piezo is near 55.9 V (nominally 0 to 100 V), expect near 66.6 V, since DAC is at 6.658 V. Piezo Error = -10.7 V.
17-03-17 17:20:19.288 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -199.7 um, Read 10 ADC samples: Avg = 40381 (-198.8 uncal um), Error = 1.0 uncal um, Median = 40381 (-198.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 40378 (-198.8 uncal um), Max = 40385 (-198.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:20:19.288 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40381, posNoise = 4, negNoise = 3
17-03-17 17:20:19.288 -07 000000431 INF: Z Motor: After move to -0.199748, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:19.288 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:19.288 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:19.288 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:19.288 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:19.288 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:19.298 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:19.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:19.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:19.298 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:19.298 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:19.298 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:19.308 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:19.308 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:19.318 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:19.508 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:19.708 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:19.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:19.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:19.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:20:19.898 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:19.898 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:19.898 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:20:20.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:20:20.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:20.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:20.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:20:20.398 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:20.408 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:20.418 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.36]
17-03-17 17:20:20.418 -07 000000431 INF: Scanning Z-Position: -0.197747
17-03-17 17:20:20.418 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 43198, sync = True, waitForSettling = True)
17-03-17 17:20:20.418 -07 000000431 INF: Z Motor: Moving to -0.197748 mm, started at -0.199739 mm, distance = 1.99 um
17-03-17 17:20:20.418 -07 000000431 INF: FPGA: Xmit ZDACW 43198\n [Z Motor]
17-03-17 17:20:20.418 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:20:20.428 -07 000000431 INF: FPGA: 'ZDACW 43198' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:20.428 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:20.428 -07 000000627 INF: FPGA: Recv ZDACR 43198
17-03-17 17:20:20.438 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.438 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:20.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.588 -07 000000502 INF: FPGA: Recv ZSGSRD 40065
17-03-17 17:20:20.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:20.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.598 -07 000000632 INF: FPGA: Recv ZSGSRD 40074
17-03-17 17:20:20.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.608 -07 000000618 INF: FPGA: Recv ZSGSRD 40069
17-03-17 17:20:20.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.618 -07 000000632 INF: FPGA: Recv ZSGSRD 40068
17-03-17 17:20:20.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.628 -07 000000458 INF: FPGA: Recv ZSGSRD 40068
17-03-17 17:20:20.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.638 -07 000000632 INF: FPGA: Recv ZSGSRD 40065
17-03-17 17:20:20.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.648 -07 000000502 INF: FPGA: Recv ZSGSRD 40073
17-03-17 17:20:20.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.658 -07 000000458 INF: FPGA: Recv ZSGSRD 40073
17-03-17 17:20:20.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.668 -07 000000502 INF: FPGA: Recv ZSGSRD 40070
17-03-17 17:20:20.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:20.678 -07 000000632 INF: FPGA: Recv ZSGSRD 40071
17-03-17 17:20:20.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.688 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:20.688 -07 000000458 INF: FPGA: Recv ZPIEZORD 35152
17-03-17 17:20:20.698 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:20.698 -07 000000431 INF: Z Motor: Piezo is near 55.1 V (nominally 0 to 100 V), expect near 65.9 V, since DAC is at 6.592 V. Piezo Error = -10.8 V.
17-03-17 17:20:20.698 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -197.7 um, Read 10 ADC samples: Avg = 40070 (-196.8 uncal um), Error = 0.9 uncal um, Median = 40070 (-196.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 40065 (-196.8 uncal um), Max = 40074 (-196.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:20.698 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40070, posNoise = 4, negNoise = 5
17-03-17 17:20:20.698 -07 000000431 INF: Z Motor: After move to -0.197748, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:20.698 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:20.698 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:20.698 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:20.698 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:20.698 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:20.698 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:20.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:20.708 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:20.708 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:20.708 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:20.708 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:20.718 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:20.718 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:20:20.718 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:20.918 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:21.118 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:21.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:21.118 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:21.118 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:20:21.308 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:21.308 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:21.308 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:20:21.488 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:21.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:21.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:21.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:21.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:21.908 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:21.918 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:21.928 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.46]
17-03-17 17:20:21.928 -07 000000431 INF: Scanning Z-Position: -0.195747
17-03-17 17:20:21.928 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 42761, sync = True, waitForSettling = True)
17-03-17 17:20:21.928 -07 000000431 INF: Z Motor: Moving to -0.195747 mm, started at -0.197742 mm, distance = 1.99 um
17-03-17 17:20:21.928 -07 000000431 INF: FPGA: Xmit ZDACW 42761\n [Z Motor]
17-03-17 17:20:21.928 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:20:21.938 -07 000000431 INF: FPGA: 'ZDACW 42761' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:20:21.938 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:21.938 -07 000000627 INF: FPGA: Recv ZDACR 42761
17-03-17 17:20:21.948 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:21.948 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:22.028 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.098313,
17-03-17 17:20:22.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.098 -07 000000632 INF: FPGA: Recv ZSGSRD 39760
17-03-17 17:20:22.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:22.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.108 -07 000000382 INF: FPGA: Recv ZSGSRD 39763
17-03-17 17:20:22.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.118 -07 000000382 INF: FPGA: Recv ZSGSRD 39759
17-03-17 17:20:22.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.128 -07 000000502 INF: FPGA: Recv ZSGSRD 39758
17-03-17 17:20:22.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.138 -07 000000382 INF: FPGA: Recv ZSGSRD 39756
17-03-17 17:20:22.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.148 -07 000000502 INF: FPGA: Recv ZSGSRD 39762
17-03-17 17:20:22.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.158 -07 000000618 INF: FPGA: Recv ZSGSRD 39755
17-03-17 17:20:22.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.168 -07 000000382 INF: FPGA: Recv ZSGSRD 39758
17-03-17 17:20:22.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.178 -07 000000541 INF: FPGA: Recv ZSGSRD 39759
17-03-17 17:20:22.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:22.188 -07 000000382 INF: FPGA: Recv ZSGSRD 39754
17-03-17 17:20:22.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.198 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:22.198 -07 000000618 INF: FPGA: Recv ZPIEZORD 34829
17-03-17 17:20:22.208 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:22.208 -07 000000431 INF: Z Motor: Piezo is near 54.4 V (nominally 0 to 100 V), expect near 65.2 V, since DAC is at 6.525 V. Piezo Error = -10.8 V.
17-03-17 17:20:22.208 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -195.7 um, Read 10 ADC samples: Avg = 39758 (-194.8 uncal um), Error = 0.9 uncal um, Median = 39758 (-194.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 39754 (-194.8 uncal um), Max = 39763 (-194.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:22.208 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39758, posNoise = 5, negNoise = 4
17-03-17 17:20:22.208 -07 000000431 INF: Z Motor: After move to -0.195747, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:22.208 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:20:22.208 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:22.208 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:22.208 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:22.208 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:22.208 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:22.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:22.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:20:22.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:22.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:22.218 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:22.228 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:22.228 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:22.238 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:22.428 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:22.628 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:22.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:22.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:22.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:20:22.818 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:22.828 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:22.828 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:20:23.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:20:23.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:23.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:23.228 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:20:23.428 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:23.438 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:23.448 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.22]
17-03-17 17:20:23.448 -07 000000431 INF: Scanning Z-Position: -0.193747
17-03-17 17:20:23.448 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 42324, sync = True, waitForSettling = True)
17-03-17 17:20:23.448 -07 000000431 INF: Z Motor: Moving to -0.193747 mm, started at -0.195737 mm, distance = 1.99 um
17-03-17 17:20:23.448 -07 000000431 INF: FPGA: Xmit ZDACW 42324\n [Z Motor]
17-03-17 17:20:23.448 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:20:23.458 -07 000000431 INF: FPGA: 'ZDACW 42324' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:23.458 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:23.458 -07 000000382 INF: FPGA: Recv ZDACR 42324
17-03-17 17:20:23.468 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.468 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:23.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.618 -07 000000618 INF: FPGA: Recv ZSGSRD 39449
17-03-17 17:20:23.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.628 -07 000000382 INF: FPGA: Recv ZSGSRD 39442
17-03-17 17:20:23.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.638 -07 000000618 INF: FPGA: Recv ZSGSRD 39443
17-03-17 17:20:23.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.648 -07 000000541 INF: FPGA: Recv ZSGSRD 39449
17-03-17 17:20:23.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.658 -07 000000382 INF: FPGA: Recv ZSGSRD 39446
17-03-17 17:20:23.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.668 -07 000000618 INF: FPGA: Recv ZSGSRD 39446
17-03-17 17:20:23.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.678 -07 000000561 INF: FPGA: Recv ZSGSRD 39450
17-03-17 17:20:23.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.688 -07 000000618 INF: FPGA: Recv ZSGSRD 39447
17-03-17 17:20:23.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.698 -07 000000382 INF: FPGA: Recv ZSGSRD 39448
17-03-17 17:20:23.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:23.708 -07 000000618 INF: FPGA: Recv ZSGSRD 39443
17-03-17 17:20:23.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.718 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:23.718 -07 000000618 INF: FPGA: Recv ZPIEZORD 34467
17-03-17 17:20:23.728 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:23.728 -07 000000431 INF: Z Motor: Piezo is near 53.6 V (nominally 0 to 100 V), expect near 64.6 V, since DAC is at 6.458 V. Piezo Error = -11.0 V.
17-03-17 17:20:23.728 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -193.7 um, Read 10 ADC samples: Avg = 39446 (-192.8 uncal um), Error = 0.9 uncal um, Median = 39446 (-192.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 39442 (-192.8 uncal um), Max = 39450 (-192.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:23.728 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39446, posNoise = 4, negNoise = 4
17-03-17 17:20:23.728 -07 000000431 INF: Z Motor: After move to -0.193747, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:23.728 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:23.728 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:23.728 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:23.728 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:23.728 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:23.728 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:23.728 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:23.738 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:23.738 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:23.738 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:23.738 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:23.748 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:23.748 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:20:23.748 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:23.948 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:24.148 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:24.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:24.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:24.148 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:20:24.338 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:24.338 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:24.338 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:20:24.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:20:24.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:24.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:24.738 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:20:25.048 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:25.058 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:25.068 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.20]
17-03-17 17:20:25.068 -07 000000431 INF: Scanning Z-Position: -0.191747
17-03-17 17:20:25.068 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 41887, sync = True, waitForSettling = True)
17-03-17 17:20:25.068 -07 000000431 INF: Z Motor: Moving to -0.191746 mm, started at -0.193733 mm, distance = 1.99 um
17-03-17 17:20:25.068 -07 000000431 INF: FPGA: Xmit ZDACW 41887\n [Z Motor]
17-03-17 17:20:25.068 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:20:25.078 -07 000000431 INF: FPGA: 'ZDACW 41887' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:20:25.078 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:25.078 -07 000000382 INF: FPGA: Recv ZDACR 41887
17-03-17 17:20:25.088 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.088 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:25.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.238 -07 000000561 INF: FPGA: Recv ZSGSRD 39137
17-03-17 17:20:25.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:25.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.248 -07 000000627 INF: FPGA: Recv ZSGSRD 39136
17-03-17 17:20:25.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.258 -07 000000618 INF: FPGA: Recv ZSGSRD 39139
17-03-17 17:20:25.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.268 -07 000000433 INF: FPGA: Recv ZSGSRD 39136
17-03-17 17:20:25.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.278 -07 000000382 INF: FPGA: Recv ZSGSRD 39132
17-03-17 17:20:25.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.288 -07 000000618 INF: FPGA: Recv ZSGSRD 39135
17-03-17 17:20:25.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.298 -07 000000561 INF: FPGA: Recv ZSGSRD 39134
17-03-17 17:20:25.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.308 -07 000000618 INF: FPGA: Recv ZSGSRD 39137
17-03-17 17:20:25.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.318 -07 000000561 INF: FPGA: Recv ZSGSRD 39138
17-03-17 17:20:25.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:25.328 -07 000000618 INF: FPGA: Recv ZSGSRD 39138
17-03-17 17:20:25.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.338 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:25.338 -07 000000382 INF: FPGA: Recv ZPIEZORD 34130
17-03-17 17:20:25.348 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:25.348 -07 000000431 INF: Z Motor: Piezo is near 52.9 V (nominally 0 to 100 V), expect near 63.9 V, since DAC is at 6.392 V. Piezo Error = -11.0 V.
17-03-17 17:20:25.348 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -191.7 um, Read 10 ADC samples: Avg = 39136 (-190.8 uncal um), Error = 0.9 uncal um, Median = 39136 (-190.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 39132 (-190.8 uncal um), Max = 39139 (-190.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:25.348 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39136, posNoise = 3, negNoise = 4
17-03-17 17:20:25.348 -07 000000431 INF: Z Motor: After move to -0.191746, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:25.348 -07 000000431 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:20:25.348 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:25.348 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:25.348 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:25.348 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:25.348 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:25.348 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:25.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:25.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:25.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:25.358 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:25.368 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:25.368 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:20:25.378 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:25.568 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-17 17:20:25.768 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 393
17-03-17 17:20:25.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 393
17-03-17 17:20:25.768 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:25.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:20:25.958 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:25.968 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:25.968 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:20:26.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:20:26.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:26.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:26.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:26.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:26.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:26.568 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:26.578 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:26.588 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.58]
17-03-17 17:20:26.588 -07 000000431 INF: Scanning Z-Position: -0.189747
17-03-17 17:20:26.588 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 41450, sync = True, waitForSettling = True)
17-03-17 17:20:26.588 -07 000000431 INF: Z Motor: Moving to -0.189746 mm, started at -0.191741 mm, distance = 2.00 um
17-03-17 17:20:26.588 -07 000000431 INF: FPGA: Xmit ZDACW 41450\n [Z Motor]
17-03-17 17:20:26.588 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:20:26.598 -07 000000431 INF: FPGA: 'ZDACW 41450' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:26.598 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:26.598 -07 000000429 INF: FPGA: Recv ZDACR 41450
17-03-17 17:20:26.608 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.608 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:26.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.758 -07 000000433 INF: FPGA: Recv ZSGSRD 38826
17-03-17 17:20:26.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:26.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.768 -07 000000561 INF: FPGA: Recv ZSGSRD 38826
17-03-17 17:20:26.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.778 -07 000000569 INF: FPGA: Recv ZSGSRD 38818
17-03-17 17:20:26.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.788 -07 000000561 INF: FPGA: Recv ZSGSRD 38828
17-03-17 17:20:26.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:20:26.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.798 -07 000000382 INF: FPGA: Recv ZSGSRD 38824
17-03-17 17:20:26.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.808 -07 000000480 INF: FPGA: Recv ZSGSRD 38824
17-03-17 17:20:26.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.818 -07 000000480 INF: FPGA: Recv ZSGSRD 38827
17-03-17 17:20:26.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.828 -07 000000618 INF: FPGA: Recv ZSGSRD 38820
17-03-17 17:20:26.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.838 -07 000000541 INF: FPGA: Recv ZSGSRD 38823
17-03-17 17:20:26.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:26.848 -07 000000627 INF: FPGA: Recv ZSGSRD 38824
17-03-17 17:20:26.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.858 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:26.858 -07 000000382 INF: FPGA: Recv ZPIEZORD 33739
17-03-17 17:20:26.868 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:26.868 -07 000000431 INF: Z Motor: Piezo is near 52.1 V (nominally 0 to 100 V), expect near 63.2 V, since DAC is at 6.325 V. Piezo Error = -11.2 V.
17-03-17 17:20:26.868 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -189.7 um, Read 10 ADC samples: Avg = 38824 (-188.8 uncal um), Error = 0.9 uncal um, Median = 38824 (-188.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 38818 (-188.8 uncal um), Max = 38828 (-188.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:20:26.868 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38824, posNoise = 4, negNoise = 6
17-03-17 17:20:26.868 -07 000000431 INF: Z Motor: After move to -0.189746, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:26.868 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:26.868 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:26.868 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:26.868 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:26.868 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:26.868 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:26.878 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:26.878 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:26.878 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:26.878 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:26.878 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:26.888 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:26.888 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:26.888 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:27.088 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:27.288 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:27.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:27.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:27.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:20:27.408 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.098313,
17-03-17 17:20:27.478 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:27.478 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:27.478 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:20:27.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 577 ms.
17-03-17 17:20:27.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:27.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:27.988 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 695 ms.
17-03-17 17:20:28.078 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:28.088 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:28.098 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.82]
17-03-17 17:20:28.098 -07 000000431 INF: Scanning Z-Position: -0.187747
17-03-17 17:20:28.098 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 41013, sync = True, waitForSettling = True)
17-03-17 17:20:28.098 -07 000000431 INF: Z Motor: Moving to -0.187745 mm, started at -0.189737 mm, distance = 1.99 um
17-03-17 17:20:28.098 -07 000000431 INF: FPGA: Xmit ZDACW 41013\n [Z Motor]
17-03-17 17:20:28.098 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:20:28.108 -07 000000431 INF: FPGA: 'ZDACW 41013' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:28.108 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:28.108 -07 000000382 INF: FPGA: Recv ZDACR 41013
17-03-17 17:20:28.118 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.118 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:28.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.268 -07 000000382 INF: FPGA: Recv ZSGSRD 38510
17-03-17 17:20:28.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:28.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.278 -07 000000382 INF: FPGA: Recv ZSGSRD 38513
17-03-17 17:20:28.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.288 -07 000000561 INF: FPGA: Recv ZSGSRD 38512
17-03-17 17:20:28.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.298 -07 000000480 INF: FPGA: Recv ZSGSRD 38515
17-03-17 17:20:28.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.308 -07 000000561 INF: FPGA: Recv ZSGSRD 38509
17-03-17 17:20:28.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.318 -07 000000382 INF: FPGA: Recv ZSGSRD 38514
17-03-17 17:20:28.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.328 -07 000000382 INF: FPGA: Recv ZSGSRD 38510
17-03-17 17:20:28.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.338 -07 000000561 INF: FPGA: Recv ZSGSRD 38511
17-03-17 17:20:28.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.348 -07 000000561 INF: FPGA: Recv ZSGSRD 38511
17-03-17 17:20:28.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:28.358 -07 000000382 INF: FPGA: Recv ZSGSRD 38505
17-03-17 17:20:28.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.368 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:28.368 -07 000000382 INF: FPGA: Recv ZPIEZORD 33441
17-03-17 17:20:28.378 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:28.378 -07 000000431 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 62.6 V, since DAC is at 6.258 V. Piezo Error = -11.1 V.
17-03-17 17:20:28.378 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -187.7 um, Read 10 ADC samples: Avg = 38511 (-186.8 uncal um), Error = 0.9 uncal um, Median = 38511 (-186.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 38505 (-186.8 uncal um), Max = 38515 (-186.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:20:28.378 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38511, posNoise = 4, negNoise = 6
17-03-17 17:20:28.378 -07 000000431 INF: Z Motor: After move to -0.187745, error = 0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:28.378 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:28.378 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:28.378 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:28.378 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:28.378 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:28.378 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:28.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:28.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:28.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:28.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:28.388 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:28.398 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:28.398 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:28.398 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:28.598 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:28.798 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:28.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:28.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:28.808 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:20:28.988 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:28.988 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:28.988 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:20:29.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:20:29.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:29.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:29.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:20:29.588 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:29.598 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:29.608 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.82]
17-03-17 17:20:29.608 -07 000000431 INF: Scanning Z-Position: -0.185747
17-03-17 17:20:29.608 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40576, sync = True, waitForSettling = True)
17-03-17 17:20:29.608 -07 000000431 INF: Z Motor: Moving to -0.185745 mm, started at -0.187726 mm, distance = 1.98 um
17-03-17 17:20:29.608 -07 000000431 INF: FPGA: Xmit ZDACW 40576\n [Z Motor]
17-03-17 17:20:29.608 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:20:29.618 -07 000000431 INF: FPGA: 'ZDACW 40576' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:29.618 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:29.618 -07 000000502 INF: FPGA: Recv ZDACR 40576
17-03-17 17:20:29.628 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.628 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:29.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.778 -07 000000569 INF: FPGA: Recv ZSGSRD 38202
17-03-17 17:20:29.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:29.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.788 -07 000000561 INF: FPGA: Recv ZSGSRD 38203
17-03-17 17:20:29.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.798 -07 000000480 INF: FPGA: Recv ZSGSRD 38206
17-03-17 17:20:29.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.808 -07 000000382 INF: FPGA: Recv ZSGSRD 38198
17-03-17 17:20:29.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.818 -07 000000569 INF: FPGA: Recv ZSGSRD 38198
17-03-17 17:20:29.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.828 -07 000000438 INF: FPGA: Recv ZSGSRD 38200
17-03-17 17:20:29.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.838 -07 000000502 INF: FPGA: Recv ZSGSRD 38204
17-03-17 17:20:29.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.848 -07 000000632 INF: FPGA: Recv ZSGSRD 38202
17-03-17 17:20:29.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.858 -07 000000569 INF: FPGA: Recv ZSGSRD 38198
17-03-17 17:20:29.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:29.868 -07 000000438 INF: FPGA: Recv ZSGSRD 38206
17-03-17 17:20:29.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.878 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:29.878 -07 000000480 INF: FPGA: Recv ZPIEZORD 33111
17-03-17 17:20:29.888 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:29.888 -07 000000431 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 61.9 V, since DAC is at 6.192 V. Piezo Error = -11.2 V.
17-03-17 17:20:29.888 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -185.7 um, Read 10 ADC samples: Avg = 38202 (-184.8 uncal um), Error = 0.9 uncal um, Median = 38202 (-184.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 38198 (-184.8 uncal um), Max = 38206 (-184.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:29.888 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38202, posNoise = 4, negNoise = 4
17-03-17 17:20:29.888 -07 000000431 INF: Z Motor: After move to -0.185745, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:29.888 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:29.888 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:29.888 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:29.888 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:29.888 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:29.888 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:29.888 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:29.898 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:29.898 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:29.898 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:29.898 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:29.908 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:29.908 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:20:29.908 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:30.108 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:30.308 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:30.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:30.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:30.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:20:30.498 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:30.498 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:30.498 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:20:30.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:30.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:30.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:30.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:30.998 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:31.008 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:31.018 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=26.22]
17-03-17 17:20:31.018 -07 000000431 INF: Scanning Z-Position: -0.183747
17-03-17 17:20:31.018 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40140, sync = True, waitForSettling = True)
17-03-17 17:20:31.018 -07 000000431 INF: Z Motor: Moving to -0.183749 mm, started at -0.185741 mm, distance = 1.99 um
17-03-17 17:20:31.018 -07 000000431 INF: FPGA: Xmit ZDACW 40140\n [Z Motor]
17-03-17 17:20:31.018 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:20:31.028 -07 000000431 INF: FPGA: 'ZDACW 40140' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:20:31.028 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:31.028 -07 000000627 INF: FPGA: Recv ZDACR 40140
17-03-17 17:20:31.038 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.038 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:31.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.188 -07 000000632 INF: FPGA: Recv ZSGSRD 37891
17-03-17 17:20:31.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:31.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.198 -07 000000541 INF: FPGA: Recv ZSGSRD 37895
17-03-17 17:20:31.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.208 -07 000000438 INF: FPGA: Recv ZSGSRD 37889
17-03-17 17:20:31.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.218 -07 000000627 INF: FPGA: Recv ZSGSRD 37888
17-03-17 17:20:31.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.228 -07 000000632 INF: FPGA: Recv ZSGSRD 37893
17-03-17 17:20:31.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.238 -07 000000382 INF: FPGA: Recv ZSGSRD 37896
17-03-17 17:20:31.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.248 -07 000000502 INF: FPGA: Recv ZSGSRD 37894
17-03-17 17:20:31.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.258 -07 000000627 INF: FPGA: Recv ZSGSRD 37893
17-03-17 17:20:31.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.268 -07 000000618 INF: FPGA: Recv ZSGSRD 37893
17-03-17 17:20:31.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:31.278 -07 000000382 INF: FPGA: Recv ZSGSRD 37895
17-03-17 17:20:31.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.288 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:31.288 -07 000000438 INF: FPGA: Recv ZPIEZORD 32758
17-03-17 17:20:31.298 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:31.298 -07 000000431 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 61.2 V, since DAC is at 6.125 V. Piezo Error = -11.3 V.
17-03-17 17:20:31.298 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -183.7 um, Read 10 ADC samples: Avg = 37893 (-182.8 uncal um), Error = 0.9 uncal um, Median = 37893 (-182.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37888 (-182.8 uncal um), Max = 37896 (-182.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:31.298 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37893, posNoise = 3, negNoise = 5
17-03-17 17:20:31.298 -07 000000431 INF: Z Motor: After move to -0.183749, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:31.298 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:20:31.298 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:31.298 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:31.298 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:31.308 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:31.308 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:31.308 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:31.308 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:20:31.308 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:31.308 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:31.308 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:31.318 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:20:31.318 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:20:31.318 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:31.488 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:31.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:31.518 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:31.718 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:31.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:31.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:31.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:20:31.908 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:31.908 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:31.908 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:20:32.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:32.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:32.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:32.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:32.408 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:32.418 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:32.428 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=27.84]
17-03-17 17:20:32.428 -07 000000431 INF: Scanning Z-Position: -0.181747
17-03-17 17:20:32.428 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39703, sync = True, waitForSettling = True)
17-03-17 17:20:32.428 -07 000000431 INF: Z Motor: Moving to -0.181749 mm, started at -0.183756 mm, distance = 2.01 um
17-03-17 17:20:32.428 -07 000000431 INF: FPGA: Xmit ZDACW 39703\n [Z Motor]
17-03-17 17:20:32.428 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:20:32.438 -07 000000431 INF: FPGA: 'ZDACW 39703' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:32.438 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:32.438 -07 000000632 INF: FPGA: Recv ZDACR 39703
17-03-17 17:20:32.448 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.448 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:32.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.598 -07 000000382 INF: FPGA: Recv ZSGSRD 37579
17-03-17 17:20:32.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:32.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.608 -07 000000632 INF: FPGA: Recv ZSGSRD 37573
17-03-17 17:20:32.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.618 -07 000000541 INF: FPGA: Recv ZSGSRD 37583
17-03-17 17:20:32.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:20:32.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.628 -07 000000433 INF: FPGA: Recv ZSGSRD 37583
17-03-17 17:20:32.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.638 -07 000000433 INF: FPGA: Recv ZSGSRD 37585
17-03-17 17:20:32.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.648 -07 000000502 INF: FPGA: Recv ZSGSRD 37580
17-03-17 17:20:32.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.658 -07 000000569 INF: FPGA: Recv ZSGSRD 37577
17-03-17 17:20:32.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.668 -07 000000502 INF: FPGA: Recv ZSGSRD 37583
17-03-17 17:20:32.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.678 -07 000000433 INF: FPGA: Recv ZSGSRD 37580
17-03-17 17:20:32.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:32.688 -07 000000502 INF: FPGA: Recv ZSGSRD 37580
17-03-17 17:20:32.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.698 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:32.698 -07 000000433 INF: FPGA: Recv ZPIEZORD 32428
17-03-17 17:20:32.708 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:32.708 -07 000000431 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 60.6 V, since DAC is at 6.058 V. Piezo Error = -11.3 V.
17-03-17 17:20:32.708 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -181.7 um, Read 10 ADC samples: Avg = 37580 (-180.8 uncal um), Error = 0.9 uncal um, Median = 37580 (-180.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37573 (-180.8 uncal um), Max = 37585 (-180.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:20:32.708 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37580, posNoise = 5, negNoise = 7
17-03-17 17:20:32.708 -07 000000431 INF: Z Motor: After move to -0.181749, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:32.708 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:32.708 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:32.708 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:32.708 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:32.708 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:32.708 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:32.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:32.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:20:32.718 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:32.718 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:32.718 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:32.728 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:32.728 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-17 17:20:32.728 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:32.768 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.096953,
17-03-17 17:20:32.928 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:20:33.128 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:20:33.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:20:33.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:33.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1042812976, 0x0, 314322768) start.
17-03-17 17:20:33.318 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:33.318 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:33.318 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:20:33.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1042812976, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:20:33.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:33.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:33.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 587 ms.
17-03-17 17:20:33.818 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:33.828 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:33.838 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=29.82]
17-03-17 17:20:33.838 -07 000000431 INF: Scanning Z-Position: -0.179747
17-03-17 17:20:33.838 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39266, sync = True, waitForSettling = True)
17-03-17 17:20:33.838 -07 000000431 INF: Z Motor: Moving to -0.179748 mm, started at -0.181745 mm, distance = 2.00 um
17-03-17 17:20:33.838 -07 000000431 INF: FPGA: Xmit ZDACW 39266\n [Z Motor]
17-03-17 17:20:33.838 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:20:33.848 -07 000000431 INF: FPGA: 'ZDACW 39266' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:33.848 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:33.848 -07 000000502 INF: FPGA: Recv ZDACR 39266
17-03-17 17:20:33.858 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:33.858 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:34.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.008 -07 000000502 INF: FPGA: Recv ZSGSRD 37262
17-03-17 17:20:34.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:34.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.018 -07 000000569 INF: FPGA: Recv ZSGSRD 37272
17-03-17 17:20:34.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.028 -07 000000433 INF: FPGA: Recv ZSGSRD 37272
17-03-17 17:20:34.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.038 -07 000000502 INF: FPGA: Recv ZSGSRD 37278
17-03-17 17:20:34.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.048 -07 000000433 INF: FPGA: Recv ZSGSRD 37266
17-03-17 17:20:34.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.058 -07 000000438 INF: FPGA: Recv ZSGSRD 37274
17-03-17 17:20:34.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.068 -07 000000438 INF: FPGA: Recv ZSGSRD 37275
17-03-17 17:20:34.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.078 -07 000000502 INF: FPGA: Recv ZSGSRD 37269
17-03-17 17:20:34.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.088 -07 000000438 INF: FPGA: Recv ZSGSRD 37265
17-03-17 17:20:34.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:34.098 -07 000000569 INF: FPGA: Recv ZSGSRD 37272
17-03-17 17:20:34.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.108 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:34.108 -07 000000438 INF: FPGA: Recv ZPIEZORD 32139
17-03-17 17:20:34.118 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:34.118 -07 000000431 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.992 V. Piezo Error = -11.3 V.
17-03-17 17:20:34.118 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.7 um, Read 10 ADC samples: Avg = 37270 (-178.9 uncal um), Error = 0.9 uncal um, Median = 37272 (-178.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37262 (-178.8 uncal um), Max = 37278 (-178.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:20:34.118 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37270, posNoise = 8, negNoise = 8
17-03-17 17:20:34.118 -07 000000431 INF: Z Motor: After move to -0.179748, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:34.118 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:34.118 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:34.118 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:34.118 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:34.118 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:34.118 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:34.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:34.128 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:20:34.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:34.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:34.128 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:34.138 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:34.138 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:34.148 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:34.338 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:34.538 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:34.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:34.538 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:34.538 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1094415464, 0x0, 314322768) start.
17-03-17 17:20:34.728 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:34.738 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:34.738 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 590 ms overall
17-03-17 17:20:35.128 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1094415464, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:20:35.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:35.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:35.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:20:35.238 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:35.248 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:35.258 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=32.92]
17-03-17 17:20:35.258 -07 000000431 INF: Scanning Z-Position: -0.177747
17-03-17 17:20:35.258 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38829, sync = True, waitForSettling = True)
17-03-17 17:20:35.258 -07 000000431 INF: Z Motor: Moving to -0.177748 mm, started at -0.179754 mm, distance = 2.01 um
17-03-17 17:20:35.258 -07 000000431 INF: FPGA: Xmit ZDACW 38829\n [Z Motor]
17-03-17 17:20:35.258 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:20:35.268 -07 000000431 INF: FPGA: 'ZDACW 38829' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:35.268 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:35.268 -07 000000627 INF: FPGA: Recv ZDACR 38829
17-03-17 17:20:35.278 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.278 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:35.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.428 -07 000000561 INF: FPGA: Recv ZSGSRD 36959
17-03-17 17:20:35.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:35.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.438 -07 000000541 INF: FPGA: Recv ZSGSRD 36960
17-03-17 17:20:35.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.448 -07 000000569 INF: FPGA: Recv ZSGSRD 36962
17-03-17 17:20:35.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.458 -07 000000561 INF: FPGA: Recv ZSGSRD 36959
17-03-17 17:20:35.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.468 -07 000000569 INF: FPGA: Recv ZSGSRD 36959
17-03-17 17:20:35.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.478 -07 000000627 INF: FPGA: Recv ZSGSRD 36962
17-03-17 17:20:35.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.488 -07 000000569 INF: FPGA: Recv ZSGSRD 36956
17-03-17 17:20:35.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.498 -07 000000627 INF: FPGA: Recv ZSGSRD 36960
17-03-17 17:20:35.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.508 -07 000000541 INF: FPGA: Recv ZSGSRD 36953
17-03-17 17:20:35.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:35.518 -07 000000433 INF: FPGA: Recv ZSGSRD 36960
17-03-17 17:20:35.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.528 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:35.528 -07 000000561 INF: FPGA: Recv ZPIEZORD 31804
17-03-17 17:20:35.538 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:35.538 -07 000000431 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.925 V. Piezo Error = -11.3 V.
17-03-17 17:20:35.538 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36959 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36960 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36953 (-176.8 uncal um), Max = 36962 (-176.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:20:35.538 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36959, posNoise = 3, negNoise = 6
17-03-17 17:20:35.538 -07 000000431 INF: Z Motor: After move to -0.177748, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:35.538 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:35.538 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:35.538 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:35.538 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:35.538 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:35.548 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:35.548 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:35.548 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:35.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:35.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:35.548 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:35.558 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:35.558 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:20:35.558 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:35.758 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:35.958 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:35.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:35.958 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:35.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:20:36.148 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:36.148 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:36.148 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:20:36.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:36.548 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:36.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:36.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:36.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:36.748 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:36.758 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:36.768 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=38.68]
17-03-17 17:20:36.768 -07 000000431 INF: Scanning Z-Position: -0.175747
17-03-17 17:20:36.768 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38392, sync = True, waitForSettling = True)
17-03-17 17:20:36.768 -07 000000431 INF: Z Motor: Moving to -0.175747 mm, started at -0.177756 mm, distance = 2.01 um
17-03-17 17:20:36.768 -07 000000431 INF: FPGA: Xmit ZDACW 38392\n [Z Motor]
17-03-17 17:20:36.778 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:20:36.778 -07 000000431 INF: FPGA: 'ZDACW 38392' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:36.778 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:36.778 -07 000000502 INF: FPGA: Recv ZDACR 38392
17-03-17 17:20:36.788 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:36.788 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:36.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:36.938 -07 000000569 INF: FPGA: Recv ZSGSRD 36650
17-03-17 17:20:36.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:36.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:36.948 -07 000000438 INF: FPGA: Recv ZSGSRD 36652
17-03-17 17:20:36.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:36.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:36.958 -07 000000433 INF: FPGA: Recv ZSGSRD 36648
17-03-17 17:20:36.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:36.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:36.968 -07 000000627 INF: FPGA: Recv ZSGSRD 36647
17-03-17 17:20:36.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:36.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:36.978 -07 000000627 INF: FPGA: Recv ZSGSRD 36650
17-03-17 17:20:36.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:36.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:36.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36645
17-03-17 17:20:36.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:36.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:36.998 -07 000000382 INF: FPGA: Recv ZSGSRD 36642
17-03-17 17:20:37.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:37.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:37.008 -07 000000382 INF: FPGA: Recv ZSGSRD 36643
17-03-17 17:20:37.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:37.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:37.018 -07 000000382 INF: FPGA: Recv ZSGSRD 36650
17-03-17 17:20:37.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:37.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:37.028 -07 000000382 INF: FPGA: Recv ZSGSRD 36650
17-03-17 17:20:37.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:37.038 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:37.038 -07 000000382 INF: FPGA: Recv ZPIEZORD 31516
17-03-17 17:20:37.048 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:37.048 -07 000000431 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -11.3 V.
17-03-17 17:20:37.048 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36648 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36649 (-174.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36642 (-174.8 uncal um), Max = 36652 (-174.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:20:37.048 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36648, posNoise = 4, negNoise = 6
17-03-17 17:20:37.048 -07 000000431 INF: Z Motor: After move to -0.175747, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:37.048 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:37.048 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:37.048 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:37.048 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:37.058 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:37.058 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:37.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:37.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:37.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:37.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:37.058 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:37.078 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:37.078 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:20:37.078 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:37.278 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:37.478 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:37.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:37.478 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:37.478 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:20:37.668 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:37.668 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:37.668 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:20:38.068 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:20:38.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:38.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:38.068 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:20:38.138 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.091548,
17-03-17 17:20:38.268 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:38.278 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:38.288 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=59.56]
17-03-17 17:20:38.288 -07 000000431 INF: Scanning Z-Position: -0.173747
17-03-17 17:20:38.288 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37955, sync = True, waitForSettling = True)
17-03-17 17:20:38.288 -07 000000431 INF: Z Motor: Moving to -0.173747 mm, started at -0.175758 mm, distance = 2.01 um
17-03-17 17:20:38.288 -07 000000431 INF: FPGA: Xmit ZDACW 37955\n [Z Motor]
17-03-17 17:20:38.288 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:20:38.298 -07 000000431 INF: FPGA: 'ZDACW 37955' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:38.298 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:38.298 -07 000000382 INF: FPGA: Recv ZDACR 37955
17-03-17 17:20:38.308 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.308 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:38.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.458 -07 000000480 INF: FPGA: Recv ZSGSRD 36331
17-03-17 17:20:38.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.488 -07 000000429 INF: FPGA: Recv ZSGSRD 36334
17-03-17 17:20:38.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:20:38.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.498 -07 000000382 INF: FPGA: Recv ZSGSRD 36337
17-03-17 17:20:38.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.528 -07 000000618 INF: FPGA: Recv ZSGSRD 36338
17-03-17 17:20:38.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:20:38.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.538 -07 000000632 INF: FPGA: Recv ZSGSRD 36331
17-03-17 17:20:38.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.548 -07 000000382 INF: FPGA: Recv ZSGSRD 36340
17-03-17 17:20:38.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.558 -07 000000632 INF: FPGA: Recv ZSGSRD 36335
17-03-17 17:20:38.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.568 -07 000000618 INF: FPGA: Recv ZSGSRD 36339
17-03-17 17:20:38.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.578 -07 000000632 INF: FPGA: Recv ZSGSRD 36334
17-03-17 17:20:38.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:38.588 -07 000000618 INF: FPGA: Recv ZSGSRD 36339
17-03-17 17:20:38.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.598 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:38.598 -07 000000632 INF: FPGA: Recv ZPIEZORD 31175
17-03-17 17:20:38.608 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:38.608 -07 000000431 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -11.3 V.
17-03-17 17:20:38.608 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36336 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36336 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36331 (-172.8 uncal um), Max = 36340 (-172.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:38.608 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36336, posNoise = 4, negNoise = 5
17-03-17 17:20:38.608 -07 000000431 INF: Z Motor: After move to -0.173747, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:38.608 -07 000000431 INF: Z Motor: MoveAbsStepped took 317 ms)
17-03-17 17:20:38.608 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:38.608 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:38.608 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:38.608 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:38.608 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:38.608 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:38.618 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:38.618 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:38.618 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:38.618 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:38.628 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:38.628 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:38.628 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:38.828 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:39.028 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:39.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:39.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:39.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) start.
17-03-17 17:20:39.218 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:39.228 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:39.228 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 590 ms to get response, and 592 ms overall
17-03-17 17:20:39.618 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:20:39.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:39.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:39.618 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:20:39.828 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:39.838 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:39.848 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=92.96]
17-03-17 17:20:39.848 -07 000000431 INF: Scanning Z-Position: -0.171747
17-03-17 17:20:39.848 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37518, sync = True, waitForSettling = True)
17-03-17 17:20:39.848 -07 000000431 INF: Z Motor: Moving to -0.171746 mm, started at -0.173754 mm, distance = 2.01 um
17-03-17 17:20:39.848 -07 000000431 INF: FPGA: Xmit ZDACW 37518\n [Z Motor]
17-03-17 17:20:39.848 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:20:39.858 -07 000000431 INF: FPGA: 'ZDACW 37518' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:39.858 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:39.858 -07 000000424 INF: FPGA: Recv ZDACR 37518
17-03-17 17:20:39.868 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:39.868 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:40.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.018 -07 000000480 INF: FPGA: Recv ZSGSRD 36029
17-03-17 17:20:40.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:40.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.028 -07 000000429 INF: FPGA: Recv ZSGSRD 36025
17-03-17 17:20:40.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.038 -07 000000632 INF: FPGA: Recv ZSGSRD 36027
17-03-17 17:20:40.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.048 -07 000000618 INF: FPGA: Recv ZSGSRD 36031
17-03-17 17:20:40.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.058 -07 000000458 INF: FPGA: Recv ZSGSRD 36024
17-03-17 17:20:40.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.068 -07 000000569 INF: FPGA: Recv ZSGSRD 36024
17-03-17 17:20:40.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.078 -07 000000429 INF: FPGA: Recv ZSGSRD 36021
17-03-17 17:20:40.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.088 -07 000000458 INF: FPGA: Recv ZSGSRD 36026
17-03-17 17:20:40.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.098 -07 000000480 INF: FPGA: Recv ZSGSRD 36029
17-03-17 17:20:40.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:40.108 -07 000000424 INF: FPGA: Recv ZSGSRD 36022
17-03-17 17:20:40.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.118 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:40.118 -07 000000480 INF: FPGA: Recv ZPIEZORD 30880
17-03-17 17:20:40.128 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:40.128 -07 000000431 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -11.3 V.
17-03-17 17:20:40.128 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36026 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36026 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36021 (-170.9 uncal um), Max = 36031 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:40.128 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36026, posNoise = 5, negNoise = 5
17-03-17 17:20:40.128 -07 000000431 INF: Z Motor: After move to -0.171746, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:40.128 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:40.128 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:40.128 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:40.128 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:40.128 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:40.128 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:40.128 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:40.138 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:40.138 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:40.138 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:40.138 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:40.148 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:40.148 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:20:40.148 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:40.888 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:40.888 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:40.888 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:40.888 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:40.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:40.888 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 721 ms to get response, and 731 ms overall
17-03-17 17:20:40.888 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:40.888 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2199090280, 0x0, 314322768) start.
17-03-17 17:20:41.468 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2199090280, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:41.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:41.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:41.478 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:41.488 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:41.588 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:41.598 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:41.608 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=76.75]
17-03-17 17:20:41.608 -07 000000431 INF: Scanning Z-Position: -0.169747
17-03-17 17:20:41.608 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37081, sync = True, waitForSettling = True)
17-03-17 17:20:41.608 -07 000000431 INF: Z Motor: Moving to -0.169746 mm, started at -0.171762 mm, distance = 2.02 um
17-03-17 17:20:41.608 -07 000000431 INF: FPGA: Xmit ZDACW 37081\n [Z Motor]
17-03-17 17:20:41.608 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:20:41.618 -07 000000431 INF: FPGA: 'ZDACW 37081' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:41.618 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:41.618 -07 000000424 INF: FPGA: Recv ZDACR 37081
17-03-17 17:20:41.628 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.628 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:41.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.778 -07 000000618 INF: FPGA: Recv ZSGSRD 35705
17-03-17 17:20:41.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.788 -07 000000424 INF: FPGA: Recv ZSGSRD 35718
17-03-17 17:20:41.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.798 -07 000000569 INF: FPGA: Recv ZSGSRD 35716
17-03-17 17:20:41.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.808 -07 000000502 INF: FPGA: Recv ZSGSRD 35708
17-03-17 17:20:41.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.818 -07 000000618 INF: FPGA: Recv ZSGSRD 35714
17-03-17 17:20:41.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.828 -07 000000632 INF: FPGA: Recv ZSGSRD 35717
17-03-17 17:20:41.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35717
17-03-17 17:20:41.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.848 -07 000000480 INF: FPGA: Recv ZSGSRD 35713
17-03-17 17:20:41.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.858 -07 000000618 INF: FPGA: Recv ZSGSRD 35709
17-03-17 17:20:41.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:41.868 -07 000000502 INF: FPGA: Recv ZSGSRD 35724
17-03-17 17:20:41.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.878 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:41.878 -07 000000569 INF: FPGA: Recv ZPIEZORD 30591
17-03-17 17:20:41.888 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:41.888 -07 000000431 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -11.2 V.
17-03-17 17:20:41.888 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35714 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35715 (-168.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35705 (-168.8 uncal um), Max = 35724 (-168.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:20:41.888 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35714, posNoise = 10, negNoise = 9
17-03-17 17:20:41.888 -07 000000431 INF: Z Motor: After move to -0.169746, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:41.888 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:41.888 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:41.888 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:41.888 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:41.888 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:41.888 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:41.888 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:41.898 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:41.898 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:41.898 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:41.898 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:41.908 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:41.908 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:41.908 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:42.108 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:42.308 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:42.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:42.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:42.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2281705520, 0x0, 314322768) start.
17-03-17 17:20:42.498 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:42.498 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:42.498 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:20:42.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2281705520, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:20:42.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:42.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:42.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:20:42.998 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:43.008 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:43.018 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=41.86]
17-03-17 17:20:43.018 -07 000000431 INF: Scanning Z-Position: -0.167747
17-03-17 17:20:43.018 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36644, sync = True, waitForSettling = True)
17-03-17 17:20:43.018 -07 000000431 INF: Z Motor: Moving to -0.167745 mm, started at -0.169758 mm, distance = 2.01 um
17-03-17 17:20:43.018 -07 000000431 INF: FPGA: Xmit ZDACW 36644\n [Z Motor]
17-03-17 17:20:43.018 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:20:43.028 -07 000000431 INF: FPGA: 'ZDACW 36644' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:43.028 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:43.028 -07 000000480 INF: FPGA: Recv ZDACR 36644
17-03-17 17:20:43.038 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.038 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:43.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35406
17-03-17 17:20:43.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.198 -07 000000632 INF: FPGA: Recv ZSGSRD 35409
17-03-17 17:20:43.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35406
17-03-17 17:20:43.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:20:43.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.228 -07 000000632 INF: FPGA: Recv ZSGSRD 35401
17-03-17 17:20:43.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35402
17-03-17 17:20:43.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.248 -07 000000480 INF: FPGA: Recv ZSGSRD 35404
17-03-17 17:20:43.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.258 -07 000000569 INF: FPGA: Recv ZSGSRD 35401
17-03-17 17:20:43.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35406
17-03-17 17:20:43.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.278 -07 000000502 INF: FPGA: Recv ZSGSRD 35404
17-03-17 17:20:43.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:43.288 -07 000000632 INF: FPGA: Recv ZSGSRD 35399
17-03-17 17:20:43.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.298 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:43.298 -07 000000424 INF: FPGA: Recv ZPIEZORD 30277
17-03-17 17:20:43.308 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:43.308 -07 000000431 INF: Z Motor: Piezo is near 44.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -11.2 V.
17-03-17 17:20:43.308 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35404 (-166.9 uncal um), Error = 0.8 uncal um, Median = 35404 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35399 (-166.9 uncal um), Max = 35409 (-166.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:43.308 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35404, posNoise = 5, negNoise = 5
17-03-17 17:20:43.308 -07 000000431 INF: Z Motor: After move to -0.167745, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:43.308 -07 000000431 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 17:20:43.308 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:43.308 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:43.308 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:43.308 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:43.308 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:43.308 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:43.318 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:43.318 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:43.318 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:43.318 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:43.328 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:43.328 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:20:43.328 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:43.528 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:20:43.538 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-17 17:20:43.728 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:43.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:43.728 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:43.728 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2333308008, 0x0, 314322768) start.
17-03-17 17:20:43.918 -07 000000424 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:43.918 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:43.918 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:20:44.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2333308008, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:20:44.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:44.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:44.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:20:44.418 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:44.428 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:44.438 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=32.55]
17-03-17 17:20:44.438 -07 000000431 INF: Scanning Z-Position: -0.165747
17-03-17 17:20:44.438 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36207, sync = True, waitForSettling = True)
17-03-17 17:20:44.438 -07 000000431 INF: Z Motor: Moving to -0.165745 mm, started at -0.167766 mm, distance = 2.02 um
17-03-17 17:20:44.438 -07 000000431 INF: FPGA: Xmit ZDACW 36207\n [Z Motor]
17-03-17 17:20:44.438 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:20:44.448 -07 000000431 INF: FPGA: 'ZDACW 36207' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:20:44.448 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:44.448 -07 000000618 INF: FPGA: Recv ZDACR 36207
17-03-17 17:20:44.458 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.458 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:44.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.608 -07 000000429 INF: FPGA: Recv ZSGSRD 35092
17-03-17 17:20:44.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:44.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.618 -07 000000632 INF: FPGA: Recv ZSGSRD 35097
17-03-17 17:20:44.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.628 -07 000000480 INF: FPGA: Recv ZSGSRD 35090
17-03-17 17:20:44.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.638 -07 000000424 INF: FPGA: Recv ZSGSRD 35089
17-03-17 17:20:44.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.648 -07 000000502 INF: FPGA: Recv ZSGSRD 35087
17-03-17 17:20:44.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.658 -07 000000618 INF: FPGA: Recv ZSGSRD 35087
17-03-17 17:20:44.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.668 -07 000000502 INF: FPGA: Recv ZSGSRD 35097
17-03-17 17:20:44.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.678 -07 000000438 INF: FPGA: Recv ZSGSRD 35091
17-03-17 17:20:44.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35089
17-03-17 17:20:44.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:44.698 -07 000000632 INF: FPGA: Recv ZSGSRD 35091
17-03-17 17:20:44.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.708 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:44.708 -07 000000502 INF: FPGA: Recv ZPIEZORD 29961
17-03-17 17:20:44.718 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:44.718 -07 000000431 INF: Z Motor: Piezo is near 44.0 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.525 V. Piezo Error = -11.2 V.
17-03-17 17:20:44.718 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35091 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35090 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35087 (-164.9 uncal um), Max = 35097 (-164.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:44.718 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35091, posNoise = 6, negNoise = 4
17-03-17 17:20:44.718 -07 000000431 INF: Z Motor: After move to -0.165745, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:44.718 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:20:44.718 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:44.718 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:44.718 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:44.718 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:44.718 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:44.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:44.728 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:44.728 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:44.728 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:44.728 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:44.738 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:20:44.738 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:20:44.738 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:44.938 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:45.138 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:45.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:45.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:45.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2415923248, 0x0, 314322768) start.
17-03-17 17:20:45.328 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:45.328 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:45.328 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:20:45.728 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2415923248, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:20:45.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:45.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:45.728 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:20:45.938 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:45.948 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:45.958 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=29.25]
17-03-17 17:20:45.958 -07 000000431 INF: Scanning Z-Position: -0.163747
17-03-17 17:20:45.958 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 35771, sync = True, waitForSettling = True)
17-03-17 17:20:45.958 -07 000000431 INF: Z Motor: Moving to -0.163749 mm, started at -0.165755 mm, distance = 2.01 um
17-03-17 17:20:45.958 -07 000000431 INF: FPGA: Xmit ZDACW 35771\n [Z Motor]
17-03-17 17:20:45.958 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:20:45.968 -07 000000431 INF: FPGA: 'ZDACW 35771' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:45.968 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:45.968 -07 000000618 INF: FPGA: Recv ZDACR 35771
17-03-17 17:20:45.978 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:45.978 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:46.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.128 -07 000000438 INF: FPGA: Recv ZSGSRD 34776
17-03-17 17:20:46.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:46.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.138 -07 000000569 INF: FPGA: Recv ZSGSRD 34782
17-03-17 17:20:46.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.148 -07 000000541 INF: FPGA: Recv ZSGSRD 34780
17-03-17 17:20:46.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.158 -07 000000429 INF: FPGA: Recv ZSGSRD 34776
17-03-17 17:20:46.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.168 -07 000000541 INF: FPGA: Recv ZSGSRD 34780
17-03-17 17:20:46.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.178 -07 000000424 INF: FPGA: Recv ZSGSRD 34776
17-03-17 17:20:46.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.188 -07 000000632 INF: FPGA: Recv ZSGSRD 34784
17-03-17 17:20:46.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.198 -07 000000424 INF: FPGA: Recv ZSGSRD 34782
17-03-17 17:20:46.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.208 -07 000000480 INF: FPGA: Recv ZSGSRD 34776
17-03-17 17:20:46.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:46.218 -07 000000569 INF: FPGA: Recv ZSGSRD 34788
17-03-17 17:20:46.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.228 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:46.228 -07 000000438 INF: FPGA: Recv ZPIEZORD 29696
17-03-17 17:20:46.238 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:46.238 -07 000000431 INF: Z Motor: Piezo is near 43.4 V (nominally 0 to 100 V), expect near 54.6 V, since DAC is at 5.458 V. Piezo Error = -11.1 V.
17-03-17 17:20:46.238 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -163.7 um, Read 10 ADC samples: Avg = 34780 (-162.9 uncal um), Error = 0.9 uncal um, Median = 34780 (-162.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34776 (-162.9 uncal um), Max = 34788 (-162.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:46.238 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34780, posNoise = 8, negNoise = 4
17-03-17 17:20:46.238 -07 000000431 INF: Z Motor: After move to -0.163749, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:46.238 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:20:46.238 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:46.238 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:46.238 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:46.238 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:46.238 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:46.238 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:46.238 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:46.248 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:46.248 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:46.248 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:46.258 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:46.258 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-17 17:20:46.268 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:46.458 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:46.488 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:46.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:46.658 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:46.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:46.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:46.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2467525736, 0x0, 314322768) start.
17-03-17 17:20:46.848 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:46.858 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:46.858 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:20:47.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2467525736, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:47.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:47.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:47.258 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:20:47.458 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:47.468 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:47.478 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=27.83]
17-03-17 17:20:47.478 -07 000000431 INF: Scanning Z-Position: -0.161747
17-03-17 17:20:47.478 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 35334, sync = True, waitForSettling = True)
17-03-17 17:20:47.478 -07 000000431 INF: Z Motor: Moving to -0.161749 mm, started at -0.163757 mm, distance = 2.01 um
17-03-17 17:20:47.478 -07 000000431 INF: FPGA: Xmit ZDACW 35334\n [Z Motor]
17-03-17 17:20:47.478 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:20:47.488 -07 000000431 INF: FPGA: 'ZDACW 35334' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:20:47.488 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:47.488 -07 000000569 INF: FPGA: Recv ZDACR 35334
17-03-17 17:20:47.498 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.498 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:47.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.648 -07 000000632 INF: FPGA: Recv ZSGSRD 34466
17-03-17 17:20:47.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:47.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.658 -07 000000618 INF: FPGA: Recv ZSGSRD 34468
17-03-17 17:20:47.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.668 -07 000000424 INF: FPGA: Recv ZSGSRD 34468
17-03-17 17:20:47.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.678 -07 000000502 INF: FPGA: Recv ZSGSRD 34469
17-03-17 17:20:47.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.688 -07 000000480 INF: FPGA: Recv ZSGSRD 34471
17-03-17 17:20:47.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.698 -07 000000502 INF: FPGA: Recv ZSGSRD 34470
17-03-17 17:20:47.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.708 -07 000000480 INF: FPGA: Recv ZSGSRD 34465
17-03-17 17:20:47.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.718 -07 000000618 INF: FPGA: Recv ZSGSRD 34468
17-03-17 17:20:47.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.728 -07 000000569 INF: FPGA: Recv ZSGSRD 34470
17-03-17 17:20:47.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:47.738 -07 000000632 INF: FPGA: Recv ZSGSRD 34467
17-03-17 17:20:47.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.748 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:47.748 -07 000000480 INF: FPGA: Recv ZPIEZORD 29372
17-03-17 17:20:47.758 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:47.758 -07 000000431 INF: Z Motor: Piezo is near 42.7 V (nominally 0 to 100 V), expect near 53.9 V, since DAC is at 5.392 V. Piezo Error = -11.2 V.
17-03-17 17:20:47.758 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -161.7 um, Read 10 ADC samples: Avg = 34468 (-160.9 uncal um), Error = 0.9 uncal um, Median = 34468 (-160.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 34465 (-160.9 uncal um), Max = 34471 (-160.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:20:47.758 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34468, posNoise = 3, negNoise = 3
17-03-17 17:20:47.758 -07 000000431 INF: Z Motor: After move to -0.161749, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:47.758 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:20:47.758 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:47.758 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:47.758 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:47.758 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:47.758 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:47.758 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:47.758 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:47.758 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:47.768 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:47.768 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:47.778 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:47.778 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:47.778 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:47.978 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:48.178 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:48.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:48.178 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:48.178 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2550140976, 0x0, 314322768) start.
17-03-17 17:20:48.368 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:48.368 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:48.368 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:20:48.768 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2550140976, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:48.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:48.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:48.768 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:20:48.868 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:48.878 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:48.888 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=26.16]
17-03-17 17:20:48.888 -07 000000431 INF: Scanning Z-Position: -0.159747
17-03-17 17:20:48.888 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 34897, sync = True, waitForSettling = True)
17-03-17 17:20:48.888 -07 000000431 INF: Z Motor: Moving to -0.159748 mm, started at -0.161753 mm, distance = 2.00 um
17-03-17 17:20:48.898 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.043918,
17-03-17 17:20:48.908 -07 000000431 INF: FPGA: Xmit ZDACW 34897\n [Z Motor]
17-03-17 17:20:48.908 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:20:48.918 -07 000000431 INF: FPGA: 'ZDACW 34897' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:20:48.938 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:48.938 -07 000000632 INF: FPGA: Recv ZDACR 34897
17-03-17 17:20:48.948 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:20:48.948 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:49.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.098 -07 000000429 INF: FPGA: Recv ZSGSRD 34156
17-03-17 17:20:49.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.108 -07 000000618 INF: FPGA: Recv ZSGSRD 34156
17-03-17 17:20:49.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.118 -07 000000569 INF: FPGA: Recv ZSGSRD 34153
17-03-17 17:20:49.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.128 -07 000000632 INF: FPGA: Recv ZSGSRD 34155
17-03-17 17:20:49.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.138 -07 000000541 INF: FPGA: Recv ZSGSRD 34163
17-03-17 17:20:49.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.148 -07 000000429 INF: FPGA: Recv ZSGSRD 34160
17-03-17 17:20:49.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.158 -07 000000541 INF: FPGA: Recv ZSGSRD 34159
17-03-17 17:20:49.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.168 -07 000000541 INF: FPGA: Recv ZSGSRD 34153
17-03-17 17:20:49.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.178 -07 000000429 INF: FPGA: Recv ZSGSRD 34154
17-03-17 17:20:49.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:49.188 -07 000000618 INF: FPGA: Recv ZSGSRD 34160
17-03-17 17:20:49.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.198 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:49.198 -07 000000480 INF: FPGA: Recv ZPIEZORD 29075
17-03-17 17:20:49.208 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:49.208 -07 000000431 INF: Z Motor: Piezo is near 42.1 V (nominally 0 to 100 V), expect near 53.2 V, since DAC is at 5.325 V. Piezo Error = -11.1 V.
17-03-17 17:20:49.208 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -159.7 um, Read 10 ADC samples: Avg = 34157 (-158.9 uncal um), Error = 0.8 uncal um, Median = 34156 (-158.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34153 (-158.9 uncal um), Max = 34163 (-158.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:49.208 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34157, posNoise = 6, negNoise = 4
17-03-17 17:20:49.208 -07 000000431 INF: Z Motor: After move to -0.159748, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:49.208 -07 000000431 INF: Z Motor: MoveAbsStepped took 316 ms)
17-03-17 17:20:49.208 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:49.208 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:49.208 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:49.208 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:49.208 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:49.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:49.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:20:49.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:49.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:49.218 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:49.228 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:20:49.228 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:20:49.248 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:49.438 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:49.638 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:49.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:49.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:49.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2601743464, 0x0, 314322768) start.
17-03-17 17:20:49.828 -07 000000424 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:49.838 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:49.838 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 605 ms overall
17-03-17 17:20:50.228 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2601743464, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:20:50.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:50.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:50.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:50.338 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:50.348 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:50.358 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.94]
17-03-17 17:20:50.358 -07 000000431 INF: Scanning Z-Position: -0.157747
17-03-17 17:20:50.358 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 34460, sync = True, waitForSettling = True)
17-03-17 17:20:50.358 -07 000000431 INF: Z Motor: Moving to -0.157748 mm, started at -0.159755 mm, distance = 2.01 um
17-03-17 17:20:50.358 -07 000000431 INF: FPGA: Xmit ZDACW 34460\n [Z Motor]
17-03-17 17:20:50.358 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:20:50.368 -07 000000431 INF: FPGA: 'ZDACW 34460' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:20:50.368 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:50.368 -07 000000569 INF: FPGA: Recv ZDACR 34460
17-03-17 17:20:50.378 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.378 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:50.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.528 -07 000000480 INF: FPGA: Recv ZSGSRD 33843
17-03-17 17:20:50.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.538 -07 000000569 INF: FPGA: Recv ZSGSRD 33850
17-03-17 17:20:50.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.548 -07 000000480 INF: FPGA: Recv ZSGSRD 33846
17-03-17 17:20:50.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.558 -07 000000632 INF: FPGA: Recv ZSGSRD 33846
17-03-17 17:20:50.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.568 -07 000000541 INF: FPGA: Recv ZSGSRD 33845
17-03-17 17:20:50.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.578 -07 000000480 INF: FPGA: Recv ZSGSRD 33851
17-03-17 17:20:50.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.588 -07 000000424 INF: FPGA: Recv ZSGSRD 33845
17-03-17 17:20:50.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.598 -07 000000480 INF: FPGA: Recv ZSGSRD 33846
17-03-17 17:20:50.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.608 -07 000000541 INF: FPGA: Recv ZSGSRD 33837
17-03-17 17:20:50.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:50.618 -07 000000480 INF: FPGA: Recv ZSGSRD 33842
17-03-17 17:20:50.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:50.628 -07 000000618 INF: FPGA: Recv ZPIEZORD 28776
17-03-17 17:20:50.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:50.638 -07 000000431 INF: Z Motor: Piezo is near 41.5 V (nominally 0 to 100 V), expect near 52.6 V, since DAC is at 5.258 V. Piezo Error = -11.1 V.
17-03-17 17:20:50.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -157.7 um, Read 10 ADC samples: Avg = 33845 (-156.9 uncal um), Error = 0.8 uncal um, Median = 33846 (-156.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 33837 (-156.9 uncal um), Max = 33851 (-156.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:20:50.638 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33845, posNoise = 6, negNoise = 8
17-03-17 17:20:50.638 -07 000000431 INF: Z Motor: After move to -0.157748, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:50.638 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:20:50.638 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:50.638 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:50.638 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:50.638 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:50.638 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:50.638 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:50.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:50.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:50.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:50.648 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:50.658 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:50.658 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:50.658 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:50.858 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:51.058 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:51.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:51.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:51.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2684358704, 0x0, 314322768) start.
17-03-17 17:20:51.248 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:51.248 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:51.248 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:20:51.488 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:51.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2684358704, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:20:51.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:51.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:51.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:20:51.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:51.878 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:51.888 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:51.898 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.00]
17-03-17 17:20:51.898 -07 000000431 INF: Scanning Z-Position: -0.155747
17-03-17 17:20:51.908 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 34023, sync = True, waitForSettling = True)
17-03-17 17:20:51.908 -07 000000431 INF: Z Motor: Moving to -0.155747 mm, started at -0.157751 mm, distance = 2.00 um
17-03-17 17:20:51.908 -07 000000431 INF: FPGA: Xmit ZDACW 34023\n [Z Motor]
17-03-17 17:20:51.908 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:20:51.918 -07 000000431 INF: FPGA: 'ZDACW 34023' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:51.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:51.918 -07 000000433 INF: FPGA: Recv ZDACR 34023
17-03-17 17:20:51.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:51.928 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:52.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.078 -07 000000433 INF: FPGA: Recv ZSGSRD 33530
17-03-17 17:20:52.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:52.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.088 -07 000000569 INF: FPGA: Recv ZSGSRD 33531
17-03-17 17:20:52.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.098 -07 000000433 INF: FPGA: Recv ZSGSRD 33530
17-03-17 17:20:52.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.108 -07 000000569 INF: FPGA: Recv ZSGSRD 33534
17-03-17 17:20:52.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.118 -07 000000569 INF: FPGA: Recv ZSGSRD 33536
17-03-17 17:20:52.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.128 -07 000000569 INF: FPGA: Recv ZSGSRD 33537
17-03-17 17:20:52.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.138 -07 000000618 INF: FPGA: Recv ZSGSRD 33536
17-03-17 17:20:52.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.148 -07 000000569 INF: FPGA: Recv ZSGSRD 33532
17-03-17 17:20:52.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.158 -07 000000569 INF: FPGA: Recv ZSGSRD 33532
17-03-17 17:20:52.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:52.168 -07 000000569 INF: FPGA: Recv ZSGSRD 33532
17-03-17 17:20:52.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.178 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:52.178 -07 000000480 INF: FPGA: Recv ZPIEZORD 28475
17-03-17 17:20:52.188 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:52.188 -07 000000431 INF: Z Motor: Piezo is near 40.8 V (nominally 0 to 100 V), expect near 51.9 V, since DAC is at 5.192 V. Piezo Error = -11.1 V.
17-03-17 17:20:52.188 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -155.7 um, Read 10 ADC samples: Avg = 33533 (-154.9 uncal um), Error = 0.8 uncal um, Median = 33532 (-154.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 33530 (-154.9 uncal um), Max = 33537 (-154.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:20:52.188 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33533, posNoise = 4, negNoise = 3
17-03-17 17:20:52.188 -07 000000431 INF: Z Motor: After move to -0.155747, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:52.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:20:52.188 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:52.188 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:52.188 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:52.188 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:52.188 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:52.188 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:52.198 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:52.198 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:52.198 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:52.198 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:52.208 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:52.208 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:20:52.208 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:52.408 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:52.608 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:52.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:52.608 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:52.618 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:20:52.798 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:52.798 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:52.798 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:20:53.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:20:53.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:53.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:53.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:20:53.398 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:53.408 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:53.418 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=23.70]
17-03-17 17:20:53.418 -07 000000431 INF: Scanning Z-Position: -0.153747
17-03-17 17:20:53.418 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 33586, sync = True, waitForSettling = True)
17-03-17 17:20:53.418 -07 000000431 INF: Z Motor: Moving to -0.153747 mm, started at -0.155746 mm, distance = 2.00 um
17-03-17 17:20:53.418 -07 000000431 INF: FPGA: Xmit ZDACW 33586\n [Z Motor]
17-03-17 17:20:53.418 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:20:53.428 -07 000000431 INF: FPGA: 'ZDACW 33586' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:53.428 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:53.428 -07 000000627 INF: FPGA: Recv ZDACR 33586
17-03-17 17:20:53.438 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.438 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:53.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.588 -07 000000618 INF: FPGA: Recv ZSGSRD 33224
17-03-17 17:20:53.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.598 -07 000000632 INF: FPGA: Recv ZSGSRD 33228
17-03-17 17:20:53.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.608 -07 000000632 INF: FPGA: Recv ZSGSRD 33220
17-03-17 17:20:53.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.618 -07 000000632 INF: FPGA: Recv ZSGSRD 33225
17-03-17 17:20:53.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.628 -07 000000632 INF: FPGA: Recv ZSGSRD 33226
17-03-17 17:20:53.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.638 -07 000000433 INF: FPGA: Recv ZSGSRD 33224
17-03-17 17:20:53.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:20:53.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.648 -07 000000632 INF: FPGA: Recv ZSGSRD 33219
17-03-17 17:20:53.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.658 -07 000000433 INF: FPGA: Recv ZSGSRD 33221
17-03-17 17:20:53.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.668 -07 000000627 INF: FPGA: Recv ZSGSRD 33229
17-03-17 17:20:53.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:53.678 -07 000000433 INF: FPGA: Recv ZSGSRD 33220
17-03-17 17:20:53.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.688 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:53.688 -07 000000627 INF: FPGA: Recv ZPIEZORD 28219
17-03-17 17:20:53.698 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:53.698 -07 000000431 INF: Z Motor: Piezo is near 40.3 V (nominally 0 to 100 V), expect near 51.2 V, since DAC is at 5.125 V. Piezo Error = -11.0 V.
17-03-17 17:20:53.698 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -153.7 um, Read 10 ADC samples: Avg = 33224 (-152.9 uncal um), Error = 0.8 uncal um, Median = 33224 (-152.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 33219 (-152.9 uncal um), Max = 33229 (-153.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:20:53.698 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33224, posNoise = 5, negNoise = 5
17-03-17 17:20:53.698 -07 000000431 INF: Z Motor: After move to -0.153747, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:53.698 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:53.698 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:53.698 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:53.698 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:53.698 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:53.698 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:53.698 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:53.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:53.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:53.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:20:53.708 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:53.718 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:53.718 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:20:53.718 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:53.918 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:54.118 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:54.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:54.118 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:54.128 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1042812976, 0x0, 314322768) start.
17-03-17 17:20:54.288 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.05891,
17-03-17 17:20:54.308 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:54.308 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:54.308 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:20:54.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1042812976, 0x0, 314322768) end. Duration was 579 ms.
17-03-17 17:20:54.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:54.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:54.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:20:54.928 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:54.938 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:54.948 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=22.85]
17-03-17 17:20:54.948 -07 000000431 INF: Scanning Z-Position: -0.151747
17-03-17 17:20:54.948 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 33149, sync = True, waitForSettling = True)
17-03-17 17:20:54.948 -07 000000431 INF: Z Motor: Moving to -0.151746 mm, started at -0.153761 mm, distance = 2.01 um
17-03-17 17:20:54.948 -07 000000431 INF: FPGA: Xmit ZDACW 33149\n [Z Motor]
17-03-17 17:20:54.948 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:20:54.958 -07 000000431 INF: FPGA: 'ZDACW 33149' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:54.958 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:54.958 -07 000000433 INF: FPGA: Recv ZDACR 33149
17-03-17 17:20:54.968 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:54.968 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:55.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.118 -07 000000433 INF: FPGA: Recv ZSGSRD 32909
17-03-17 17:20:55.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.128 -07 000000541 INF: FPGA: Recv ZSGSRD 32918
17-03-17 17:20:55.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.138 -07 000000632 INF: FPGA: Recv ZSGSRD 32908
17-03-17 17:20:55.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.148 -07 000000569 INF: FPGA: Recv ZSGSRD 32911
17-03-17 17:20:55.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.158 -07 000000433 INF: FPGA: Recv ZSGSRD 32913
17-03-17 17:20:55.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.168 -07 000000541 INF: FPGA: Recv ZSGSRD 32908
17-03-17 17:20:55.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.178 -07 000000541 INF: FPGA: Recv ZSGSRD 32905
17-03-17 17:20:55.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.188 -07 000000433 INF: FPGA: Recv ZSGSRD 32911
17-03-17 17:20:55.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.198 -07 000000632 INF: FPGA: Recv ZSGSRD 32910
17-03-17 17:20:55.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:55.208 -07 000000433 INF: FPGA: Recv ZSGSRD 32913
17-03-17 17:20:55.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.218 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:55.218 -07 000000433 INF: FPGA: Recv ZPIEZORD 27884
17-03-17 17:20:55.228 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:55.228 -07 000000431 INF: Z Motor: Piezo is near 39.6 V (nominally 0 to 100 V), expect near 50.6 V, since DAC is at 5.058 V. Piezo Error = -11.0 V.
17-03-17 17:20:55.228 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -151.7 um, Read 10 ADC samples: Avg = 32911 (-150.9 uncal um), Error = 0.8 uncal um, Median = 32910 (-150.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 32905 (-150.9 uncal um), Max = 32918 (-151.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:20:55.228 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32911, posNoise = 7, negNoise = 6
17-03-17 17:20:55.228 -07 000000431 INF: Z Motor: After move to -0.151746, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:55.228 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:55.228 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:55.228 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:55.228 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:55.228 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:55.228 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:55.228 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:55.238 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:55.238 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:55.238 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:55.238 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:55.248 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:20:55.248 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:55.258 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:55.448 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:55.648 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:55.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:55.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:55.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:20:55.838 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:55.838 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:55.838 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:20:56.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:20:56.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:56.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:56.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:20:56.438 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:56.448 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:56.458 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=22.68]
17-03-17 17:20:56.458 -07 000000431 INF: Scanning Z-Position: -0.149747
17-03-17 17:20:56.458 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32712, sync = True, waitForSettling = True)
17-03-17 17:20:56.458 -07 000000431 INF: Z Motor: Moving to -0.149746 mm, started at -0.151751 mm, distance = 2.00 um
17-03-17 17:20:56.458 -07 000000431 INF: FPGA: Xmit ZDACW 32712\n [Z Motor]
17-03-17 17:20:56.458 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:20:56.468 -07 000000431 INF: FPGA: 'ZDACW 32712' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:56.468 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:56.468 -07 000000569 INF: FPGA: Recv ZDACR 32712
17-03-17 17:20:56.478 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.478 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:56.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:20:56.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:20:56.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.628 -07 000000480 INF: FPGA: Recv ZSGSRD 32604
17-03-17 17:20:56.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.638 -07 000000569 INF: FPGA: Recv ZSGSRD 32600
17-03-17 17:20:56.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.648 -07 000000541 INF: FPGA: Recv ZSGSRD 32601
17-03-17 17:20:56.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.658 -07 000000632 INF: FPGA: Recv ZSGSRD 32597
17-03-17 17:20:56.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.668 -07 000000541 INF: FPGA: Recv ZSGSRD 32598
17-03-17 17:20:56.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.678 -07 000000569 INF: FPGA: Recv ZSGSRD 32592
17-03-17 17:20:56.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.688 -07 000000632 INF: FPGA: Recv ZSGSRD 32588
17-03-17 17:20:56.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.698 -07 000000569 INF: FPGA: Recv ZSGSRD 32602
17-03-17 17:20:56.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.708 -07 000000632 INF: FPGA: Recv ZSGSRD 32599
17-03-17 17:20:56.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:56.718 -07 000000433 INF: FPGA: Recv ZSGSRD 32598
17-03-17 17:20:56.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.728 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:56.728 -07 000000382 INF: FPGA: Recv ZPIEZORD 27637
17-03-17 17:20:56.738 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:56.738 -07 000000431 INF: Z Motor: Piezo is near 39.0 V (nominally 0 to 100 V), expect near 49.9 V, since DAC is at 4.992 V. Piezo Error = -10.9 V.
17-03-17 17:20:56.738 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -149.7 um, Read 10 ADC samples: Avg = 32598 (-148.9 uncal um), Error = 0.8 uncal um, Median = 32598 (-148.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 32588 (-148.8 uncal um), Max = 32604 (-149.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:20:56.738 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32598, posNoise = 6, negNoise = 10
17-03-17 17:20:56.738 -07 000000431 INF: Z Motor: After move to -0.149746, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:56.738 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:20:56.738 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:56.738 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:56.738 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:56.738 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:56.748 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:56.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:56.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:56.748 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:56.748 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:56.748 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:56.758 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:56.758 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:20:56.758 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:56.958 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:57.158 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:57.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:57.158 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:57.158 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:20:57.348 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:57.348 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:57.348 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:20:57.748 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:20:57.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:57.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:57.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:20:57.848 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:57.858 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:57.868 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=23.22]
17-03-17 17:20:57.868 -07 000000431 INF: Scanning Z-Position: -0.147747
17-03-17 17:20:57.868 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32275, sync = True, waitForSettling = True)
17-03-17 17:20:57.868 -07 000000431 INF: Z Motor: Moving to -0.147745 mm, started at -0.149740 mm, distance = 1.99 um
17-03-17 17:20:57.868 -07 000000431 INF: FPGA: Xmit ZDACW 32275\n [Z Motor]
17-03-17 17:20:57.868 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:20:57.878 -07 000000431 INF: FPGA: 'ZDACW 32275' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:20:57.878 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:57.878 -07 000000433 INF: FPGA: Recv ZDACR 32275
17-03-17 17:20:57.888 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:57.888 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:58.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.038 -07 000000632 INF: FPGA: Recv ZSGSRD 32285
17-03-17 17:20:58.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:58.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.048 -07 000000632 INF: FPGA: Recv ZSGSRD 32290
17-03-17 17:20:58.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.058 -07 000000541 INF: FPGA: Recv ZSGSRD 32283
17-03-17 17:20:58.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.068 -07 000000632 INF: FPGA: Recv ZSGSRD 32288
17-03-17 17:20:58.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.078 -07 000000502 INF: FPGA: Recv ZSGSRD 32283
17-03-17 17:20:58.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.088 -07 000000502 INF: FPGA: Recv ZSGSRD 32282
17-03-17 17:20:58.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.098 -07 000000438 INF: FPGA: Recv ZSGSRD 32293
17-03-17 17:20:58.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.108 -07 000000569 INF: FPGA: Recv ZSGSRD 32288
17-03-17 17:20:58.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.118 -07 000000433 INF: FPGA: Recv ZSGSRD 32285
17-03-17 17:20:58.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:58.128 -07 000000458 INF: FPGA: Recv ZSGSRD 32288
17-03-17 17:20:58.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.138 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:58.138 -07 000000480 INF: FPGA: Recv ZPIEZORD 27344
17-03-17 17:20:58.148 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:58.148 -07 000000431 INF: Z Motor: Piezo is near 38.4 V (nominally 0 to 100 V), expect near 49.2 V, since DAC is at 4.925 V. Piezo Error = -10.8 V.
17-03-17 17:20:58.148 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -147.7 um, Read 10 ADC samples: Avg = 32286 (-146.9 uncal um), Error = 0.8 uncal um, Median = 32286 (-146.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 32282 (-146.9 uncal um), Max = 32293 (-147.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:20:58.148 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32286, posNoise = 7, negNoise = 4
17-03-17 17:20:58.148 -07 000000431 INF: Z Motor: After move to -0.147745, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:58.148 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:20:58.148 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:58.148 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:58.148 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:58.148 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:58.148 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:58.148 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:58.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:58.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:58.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:58.158 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:58.168 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:20:58.168 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:20:58.168 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:58.368 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:20:58.568 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:20:58.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:20:58.568 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:20:58.568 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:20:58.758 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:20:58.758 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:20:58.758 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:20:59.158 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 591 ms.
17-03-17 17:20:59.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:20:59.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:20:59.168 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:20:59.358 -07 000000431 INF: ComputeBrenner start
17-03-17 17:20:59.368 -07 000000431 INF: Image SNR check: start
17-03-17 17:20:59.378 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=22.81]
17-03-17 17:20:59.378 -07 000000431 INF: Scanning Z-Position: -0.145747
17-03-17 17:20:59.378 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31838, sync = True, waitForSettling = True)
17-03-17 17:20:59.378 -07 000000431 INF: Z Motor: Moving to -0.145745 mm, started at -0.147735 mm, distance = 1.99 um
17-03-17 17:20:59.378 -07 000000431 INF: FPGA: Xmit ZDACW 31838\n [Z Motor]
17-03-17 17:20:59.378 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:20:59.388 -07 000000431 INF: FPGA: 'ZDACW 31838' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:20:59.388 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:20:59.388 -07 000000480 INF: FPGA: Recv ZDACR 31838
17-03-17 17:20:59.398 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.398 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:20:59.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.548 -07 000000458 INF: FPGA: Recv ZSGSRD 31976
17-03-17 17:20:59.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:20:59.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.558 -07 000000433 INF: FPGA: Recv ZSGSRD 31974
17-03-17 17:20:59.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.568 -07 000000458 INF: FPGA: Recv ZSGSRD 31980
17-03-17 17:20:59.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.578 -07 000000433 INF: FPGA: Recv ZSGSRD 31981
17-03-17 17:20:59.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.588 -07 000000458 INF: FPGA: Recv ZSGSRD 31973
17-03-17 17:20:59.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.598 -07 000000433 INF: FPGA: Recv ZSGSRD 31973
17-03-17 17:20:59.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.608 -07 000000438 INF: FPGA: Recv ZSGSRD 31975
17-03-17 17:20:59.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.618 -07 000000433 INF: FPGA: Recv ZSGSRD 31978
17-03-17 17:20:59.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.628 -07 000000502 INF: FPGA: Recv ZSGSRD 31977
17-03-17 17:20:59.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:20:59.648 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.05619,
17-03-17 17:20:59.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:20:59.658 -07 000000502 INF: FPGA: Recv ZSGSRD 31976
17-03-17 17:20:59.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:20:59.678 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:20:59.678 -07 000000502 INF: FPGA: Recv ZPIEZORD 27066
17-03-17 17:20:59.688 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:20:59.688 -07 000000431 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 48.6 V, since DAC is at 4.858 V. Piezo Error = -10.8 V.
17-03-17 17:20:59.688 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -145.7 um, Read 10 ADC samples: Avg = 31976 (-144.9 uncal um), Error = 0.8 uncal um, Median = 31976 (-144.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31973 (-144.9 uncal um), Max = 31981 (-145.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:20:59.688 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31976, posNoise = 5, negNoise = 3
17-03-17 17:20:59.688 -07 000000431 INF: Z Motor: After move to -0.145745, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:20:59.688 -07 000000431 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-17 17:20:59.688 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:20:59.688 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:20:59.688 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:20:59.688 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:20:59.698 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:20:59.698 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:20:59.698 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:20:59.698 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:20:59.698 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:20:59.698 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:20:59.708 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 7 ms.
17-03-17 17:20:59.708 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 11 ms.
17-03-17 17:20:59.718 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:20:59.908 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:00.108 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:00.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:00.108 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:00.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:21:00.298 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:00.308 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:00.308 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 592 ms overall
17-03-17 17:21:00.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:21:00.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:00.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:00.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:21:00.918 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:00.928 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:00.938 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=23.36]
17-03-17 17:21:00.938 -07 000000431 INF: Scanning Z-Position: -0.143747
17-03-17 17:21:00.938 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31402, sync = True, waitForSettling = True)
17-03-17 17:21:00.938 -07 000000431 INF: Z Motor: Moving to -0.143749 mm, started at -0.145744 mm, distance = 1.99 um
17-03-17 17:21:00.938 -07 000000431 INF: FPGA: Xmit ZDACW 31402\n [Z Motor]
17-03-17 17:21:00.938 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:21:00.948 -07 000000431 INF: FPGA: 'ZDACW 31402' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:00.948 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:00.948 -07 000000429 INF: FPGA: Recv ZDACR 31402
17-03-17 17:21:00.958 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:00.958 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:01.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.108 -07 000000424 INF: FPGA: Recv ZSGSRD 31664
17-03-17 17:21:01.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:01.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.118 -07 000000429 INF: FPGA: Recv ZSGSRD 31666
17-03-17 17:21:01.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.128 -07 000000424 INF: FPGA: Recv ZSGSRD 31666
17-03-17 17:21:01.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.138 -07 000000382 INF: FPGA: Recv ZSGSRD 31663
17-03-17 17:21:01.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.148 -07 000000424 INF: FPGA: Recv ZSGSRD 31664
17-03-17 17:21:01.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.158 -07 000000382 INF: FPGA: Recv ZSGSRD 31667
17-03-17 17:21:01.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.168 -07 000000618 INF: FPGA: Recv ZSGSRD 31666
17-03-17 17:21:01.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.178 -07 000000382 INF: FPGA: Recv ZSGSRD 31663
17-03-17 17:21:01.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.188 -07 000000424 INF: FPGA: Recv ZSGSRD 31666
17-03-17 17:21:01.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:01.198 -07 000000429 INF: FPGA: Recv ZSGSRD 31663
17-03-17 17:21:01.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.208 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:01.208 -07 000000382 INF: FPGA: Recv ZPIEZORD 26786
17-03-17 17:21:01.218 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:01.218 -07 000000431 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 47.9 V, since DAC is at 4.792 V. Piezo Error = -10.7 V.
17-03-17 17:21:01.218 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -143.7 um, Read 10 ADC samples: Avg = 31665 (-142.9 uncal um), Error = 0.8 uncal um, Median = 31665 (-142.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 31663 (-142.9 uncal um), Max = 31667 (-142.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:21:01.218 -07 000000431 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31665, posNoise = 2, negNoise = 2
17-03-17 17:21:01.218 -07 000000431 INF: Z Motor: After move to -0.143749, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:01.218 -07 000000431 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:21:01.218 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:01.218 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:01.218 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:01.218 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:01.218 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:01.218 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:01.228 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:01.228 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:01.228 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:01.228 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:01.238 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:21:01.238 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:21:01.238 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:01.438 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:21:01.488 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:01.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:01.638 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:21:01.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:21:01.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:01.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:21:01.828 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:01.828 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:01.828 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:21:02.228 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:21:02.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:02.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:02.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:21:02.428 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:02.438 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:02.448 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=23.28]
17-03-17 17:21:02.448 -07 000000431 INF: Scanning Z-Position: -0.141747
17-03-17 17:21:02.448 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30965, sync = True, waitForSettling = True)
17-03-17 17:21:02.448 -07 000000431 INF: Z Motor: Moving to -0.141749 mm, started at -0.143746 mm, distance = 2.00 um
17-03-17 17:21:02.448 -07 000000431 INF: FPGA: Xmit ZDACW 30965\n [Z Motor]
17-03-17 17:21:02.448 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:21:02.458 -07 000000431 INF: FPGA: 'ZDACW 30965' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:02.458 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:02.458 -07 000000382 INF: FPGA: Recv ZDACR 30965
17-03-17 17:21:02.468 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.468 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:02.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.618 -07 000000429 INF: FPGA: Recv ZSGSRD 31353
17-03-17 17:21:02.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:02.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.628 -07 000000502 INF: FPGA: Recv ZSGSRD 31359
17-03-17 17:21:02.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.638 -07 000000429 INF: FPGA: Recv ZSGSRD 31350
17-03-17 17:21:02.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.648 -07 000000502 INF: FPGA: Recv ZSGSRD 31351
17-03-17 17:21:02.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.658 -07 000000429 INF: FPGA: Recv ZSGSRD 31357
17-03-17 17:21:02.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:02.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.668 -07 000000424 INF: FPGA: Recv ZSGSRD 31351
17-03-17 17:21:02.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.678 -07 000000502 INF: FPGA: Recv ZSGSRD 31353
17-03-17 17:21:02.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.688 -07 000000561 INF: FPGA: Recv ZSGSRD 31354
17-03-17 17:21:02.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.698 -07 000000429 INF: FPGA: Recv ZSGSRD 31352
17-03-17 17:21:02.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:02.708 -07 000000382 INF: FPGA: Recv ZSGSRD 31357
17-03-17 17:21:02.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.718 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:02.718 -07 000000424 INF: FPGA: Recv ZPIEZORD 26548
17-03-17 17:21:02.728 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:02.728 -07 000000431 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 47.2 V, since DAC is at 4.725 V. Piezo Error = -10.5 V.
17-03-17 17:21:02.728 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -141.7 um, Read 10 ADC samples: Avg = 31354 (-140.9 uncal um), Error = 0.8 uncal um, Median = 31353 (-140.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31350 (-140.9 uncal um), Max = 31359 (-141.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:02.728 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31354, posNoise = 5, negNoise = 4
17-03-17 17:21:02.728 -07 000000431 INF: Z Motor: After move to -0.141749, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:02.728 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:21:02.728 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:02.728 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:02.728 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:02.728 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:02.728 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:02.738 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:02.738 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:02.738 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:02.738 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:21:02.738 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:02.748 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:02.748 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:02.748 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:02.948 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:03.148 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:03.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:03.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:03.158 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:21:03.338 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:03.338 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:03.338 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:21:03.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:21:03.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:03.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:03.748 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-17 17:21:04.048 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:04.058 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:04.058 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.29]
17-03-17 17:21:04.058 -07 000000431 INF: Scanning Z-Position: -0.139747
17-03-17 17:21:04.068 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30528, sync = True, waitForSettling = True)
17-03-17 17:21:04.068 -07 000000431 INF: Z Motor: Moving to -0.139748 mm, started at -0.141748 mm, distance = 2.00 um
17-03-17 17:21:04.068 -07 000000431 INF: FPGA: Xmit ZDACW 30528\n [Z Motor]
17-03-17 17:21:04.068 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:21:04.078 -07 000000431 INF: FPGA: 'ZDACW 30528' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:04.078 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:04.078 -07 000000502 INF: FPGA: Recv ZDACR 30528
17-03-17 17:21:04.088 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.088 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:04.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.238 -07 000000627 INF: FPGA: Recv ZSGSRD 31036
17-03-17 17:21:04.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:04.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.248 -07 000000382 INF: FPGA: Recv ZSGSRD 31047
17-03-17 17:21:04.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.258 -07 000000382 INF: FPGA: Recv ZSGSRD 31042
17-03-17 17:21:04.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.268 -07 000000502 INF: FPGA: Recv ZSGSRD 31042
17-03-17 17:21:04.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.278 -07 000000627 INF: FPGA: Recv ZSGSRD 31042
17-03-17 17:21:04.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.288 -07 000000480 INF: FPGA: Recv ZSGSRD 31044
17-03-17 17:21:04.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.298 -07 000000480 INF: FPGA: Recv ZSGSRD 31050
17-03-17 17:21:04.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.308 -07 000000480 INF: FPGA: Recv ZSGSRD 31043
17-03-17 17:21:04.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.318 -07 000000480 INF: FPGA: Recv ZSGSRD 31034
17-03-17 17:21:04.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:04.328 -07 000000480 INF: FPGA: Recv ZSGSRD 31045
17-03-17 17:21:04.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.338 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:04.338 -07 000000480 INF: FPGA: Recv ZPIEZORD 26246
17-03-17 17:21:04.348 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:04.348 -07 000000431 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.658 V. Piezo Error = -10.5 V.
17-03-17 17:21:04.348 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31042 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31042 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31034 (-138.9 uncal um), Max = 31050 (-139.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:21:04.348 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31042, posNoise = 8, negNoise = 8
17-03-17 17:21:04.348 -07 000000431 INF: Z Motor: After move to -0.139748, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:04.348 -07 000000431 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:21:04.348 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:04.348 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:04.348 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:04.358 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:04.358 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:04.358 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:04.358 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:04.358 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:04.358 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:04.358 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:04.378 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:04.378 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:21:04.378 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:04.578 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:05.758 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:05.758 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:05.758 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:05.758 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 1370 ms to get response, and 1376 ms overall
17-03-17 17:21:05.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:05.758 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:21:05.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:05.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:21:06.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:21:06.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:06.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:06.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:21:06.458 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:06.468 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:06.478 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.01]
17-03-17 17:21:06.478 -07 000000431 INF: Scanning Z-Position: -0.137747
17-03-17 17:21:06.478 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30091, sync = True, waitForSettling = True)
17-03-17 17:21:06.478 -07 000000431 INF: Z Motor: Moving to -0.137748 mm, started at -0.139744 mm, distance = 2.00 um
17-03-17 17:21:06.478 -07 000000431 INF: FPGA: Xmit ZDACW 30091\n [Z Motor]
17-03-17 17:21:06.478 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:21:06.488 -07 000000431 INF: FPGA: 'ZDACW 30091' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:06.488 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:06.488 -07 000000541 INF: FPGA: Recv ZDACR 30091
17-03-17 17:21:06.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:06.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:06.498 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.498 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:06.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.648 -07 000000438 INF: FPGA: Recv ZSGSRD 30737
17-03-17 17:21:06.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:06.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.658 -07 000000541 INF: FPGA: Recv ZSGSRD 30728
17-03-17 17:21:06.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.668 -07 000000438 INF: FPGA: Recv ZSGSRD 30731
17-03-17 17:21:06.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.678 -07 000000541 INF: FPGA: Recv ZSGSRD 30733
17-03-17 17:21:06.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30729
17-03-17 17:21:06.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.698 -07 000000618 INF: FPGA: Recv ZSGSRD 30730
17-03-17 17:21:06.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.708 -07 000000632 INF: FPGA: Recv ZSGSRD 30730
17-03-17 17:21:06.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.718 -07 000000458 INF: FPGA: Recv ZSGSRD 30732
17-03-17 17:21:06.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.728 -07 000000541 INF: FPGA: Recv ZSGSRD 30738
17-03-17 17:21:06.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:06.738 -07 000000458 INF: FPGA: Recv ZSGSRD 30730
17-03-17 17:21:06.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.748 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:06.748 -07 000000632 INF: FPGA: Recv ZPIEZORD 25969
17-03-17 17:21:06.758 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:06.758 -07 000000431 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -10.4 V.
17-03-17 17:21:06.758 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30732 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30730 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30728 (-136.9 uncal um), Max = 30738 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:06.758 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30732, posNoise = 6, negNoise = 4
17-03-17 17:21:06.758 -07 000000431 INF: Z Motor: After move to -0.137748, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:06.758 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:21:06.758 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:06.758 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:06.758 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:06.758 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:06.758 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:06.758 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:06.768 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:06.768 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:06.768 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:06.768 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:06.778 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:06.778 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:21:06.778 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:06.978 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:07.178 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:07.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:07.178 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:07.178 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:21:07.368 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:07.368 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:07.368 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:21:07.768 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:07.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:07.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:07.768 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:07.968 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:07.978 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:07.988 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.48]
17-03-17 17:21:07.988 -07 000000431 INF: Scanning Z-Position: -0.135747
17-03-17 17:21:07.988 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29654, sync = True, waitForSettling = True)
17-03-17 17:21:07.988 -07 000000431 INF: Z Motor: Moving to -0.135747 mm, started at -0.137752 mm, distance = 2.00 um
17-03-17 17:21:07.988 -07 000000431 INF: FPGA: Xmit ZDACW 29654\n [Z Motor]
17-03-17 17:21:07.988 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:21:07.998 -07 000000431 INF: FPGA: 'ZDACW 29654' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:07.998 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:07.998 -07 000000502 INF: FPGA: Recv ZDACR 29654
17-03-17 17:21:08.008 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.008 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:08.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.158 -07 000000632 INF: FPGA: Recv ZSGSRD 30421
17-03-17 17:21:08.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:08.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.168 -07 000000502 INF: FPGA: Recv ZSGSRD 30420
17-03-17 17:21:08.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.178 -07 000000433 INF: FPGA: Recv ZSGSRD 30421
17-03-17 17:21:08.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.188 -07 000000458 INF: FPGA: Recv ZSGSRD 30420
17-03-17 17:21:08.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.198 -07 000000569 INF: FPGA: Recv ZSGSRD 30418
17-03-17 17:21:08.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.208 -07 000000433 INF: FPGA: Recv ZSGSRD 30425
17-03-17 17:21:08.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.218 -07 000000458 INF: FPGA: Recv ZSGSRD 30416
17-03-17 17:21:08.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30422
17-03-17 17:21:08.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.238 -07 000000458 INF: FPGA: Recv ZSGSRD 30420
17-03-17 17:21:08.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:08.248 -07 000000541 INF: FPGA: Recv ZSGSRD 30418
17-03-17 17:21:08.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.258 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:08.258 -07 000000458 INF: FPGA: Recv ZPIEZORD 25719
17-03-17 17:21:08.268 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:08.268 -07 000000431 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -10.3 V.
17-03-17 17:21:08.268 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30420 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30420 (-135.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30416 (-134.9 uncal um), Max = 30425 (-135.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:08.268 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30420, posNoise = 5, negNoise = 4
17-03-17 17:21:08.268 -07 000000431 INF: Z Motor: After move to -0.135747, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:08.268 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:21:08.268 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:08.268 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:08.268 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:08.268 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:08.268 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:08.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:08.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:08.268 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:08.278 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:08.278 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:08.288 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:08.288 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:21:08.288 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:08.488 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:09.258 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:09.258 -07 000000618 INF: FPGA: Recv @CAMSNAP 588
17-03-17 17:21:09.258 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:09.258 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 961 ms to get response, and 964 ms overall
17-03-17 17:21:09.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:09.258 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:09.258 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:21:09.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:09.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:09.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:09.848 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:09.958 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:09.968 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:09.978 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.76]
17-03-17 17:21:09.978 -07 000000431 INF: Scanning Z-Position: -0.133747
17-03-17 17:21:09.978 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29217, sync = True, waitForSettling = True)
17-03-17 17:21:09.978 -07 000000431 INF: Z Motor: Moving to -0.133747 mm, started at -0.135748 mm, distance = 2.00 um
17-03-17 17:21:09.978 -07 000000431 INF: FPGA: Xmit ZDACW 29217\n [Z Motor]
17-03-17 17:21:09.978 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:21:09.988 -07 000000431 INF: FPGA: 'ZDACW 29217' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:09.988 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:09.988 -07 000000438 INF: FPGA: Recv ZDACR 29217
17-03-17 17:21:09.998 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:09.998 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:10.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.148 -07 000000541 INF: FPGA: Recv ZSGSRD 30109
17-03-17 17:21:10.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:10.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30109
17-03-17 17:21:10.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.168 -07 000000429 INF: FPGA: Recv ZSGSRD 30113
17-03-17 17:21:10.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:10.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.178 -07 000000502 INF: FPGA: Recv ZSGSRD 30107
17-03-17 17:21:10.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.188 -07 000000429 INF: FPGA: Recv ZSGSRD 30105
17-03-17 17:21:10.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.198 -07 000000502 INF: FPGA: Recv ZSGSRD 30111
17-03-17 17:21:10.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.208 -07 000000458 INF: FPGA: Recv ZSGSRD 30109
17-03-17 17:21:10.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.218 -07 000000502 INF: FPGA: Recv ZSGSRD 30109
17-03-17 17:21:10.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30109
17-03-17 17:21:10.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:10.238 -07 000000502 INF: FPGA: Recv ZSGSRD 30108
17-03-17 17:21:10.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.248 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:10.248 -07 000000458 INF: FPGA: Recv ZPIEZORD 25430
17-03-17 17:21:10.258 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:10.258 -07 000000431 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.458 V. Piezo Error = -10.3 V.
17-03-17 17:21:10.258 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30109 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30109 (-133.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30105 (-132.9 uncal um), Max = 30113 (-133.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:10.258 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30109, posNoise = 4, negNoise = 4
17-03-17 17:21:10.258 -07 000000431 INF: Z Motor: After move to -0.133747, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:10.258 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:21:10.258 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:10.258 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:10.258 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:10.258 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:10.258 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:10.258 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:10.258 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:21:10.258 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:10.268 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:10.268 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:10.278 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:10.278 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:10.278 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:10.478 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:10.678 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:10.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:10.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:10.678 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:21:10.868 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:10.868 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:10.868 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:21:11.118 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.090153,
17-03-17 17:21:11.268 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:21:11.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:11.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:11.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:21:11.488 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:11.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:11.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:11.498 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:11.508 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=24.38]
17-03-17 17:21:11.508 -07 000000431 INF: Through-focus: Z pos. [um] vs. Focus metric
17-03-17 17:21:11.508 -07 000000431 INF:   -213.747  2.140507
17-03-17 17:21:11.508 -07 000000431 INF:   -211.747  2.13859
17-03-17 17:21:11.508 -07 000000431 INF:   -209.747  2.14412
17-03-17 17:21:11.508 -07 000000431 INF:   -207.747  2.145571
17-03-17 17:21:11.508 -07 000000431 INF:   -205.747  2.143418
17-03-17 17:21:11.508 -07 000000431 INF:   -203.747  2.144181
17-03-17 17:21:11.508 -07 000000431 INF:   -201.747  2.138835
17-03-17 17:21:11.508 -07 000000431 INF:   -199.747  2.145153
17-03-17 17:21:11.508 -07 000000431 INF:   -197.747  2.140165
17-03-17 17:21:11.508 -07 000000431 INF:   -195.747  2.14823
17-03-17 17:21:11.508 -07 000000431 INF:   -193.747  2.145117
17-03-17 17:21:11.508 -07 000000431 INF:   -191.747  2.139458
17-03-17 17:21:11.508 -07 000000431 INF:   -189.747  2.140448
17-03-17 17:21:11.508 -07 000000431 INF:   -187.747  2.142573
17-03-17 17:21:11.508 -07 000000431 INF:   -185.747  2.151037
17-03-17 17:21:11.508 -07 000000431 INF:   -183.747  2.148909
17-03-17 17:21:11.508 -07 000000431 INF:   -181.747  2.164574
17-03-17 17:21:11.508 -07 000000431 INF:   -179.747  2.188575
17-03-17 17:21:11.508 -07 000000431 INF:   -177.747  2.285145
17-03-17 17:21:11.508 -07 000000431 INF:   -175.747  2.955317
17-03-17 17:21:11.508 -07 000000431 INF:   -173.747  9.956689
17-03-17 17:21:11.508 -07 000000431 INF:   -171.747  4.53303
17-03-17 17:21:11.508 -07 000000431 INF:   -169.747  2.305202
17-03-17 17:21:11.508 -07 000000431 INF:   -167.747  2.164053
17-03-17 17:21:11.508 -07 000000431 INF:   -165.747  2.146638
17-03-17 17:21:11.508 -07 000000431 INF:   -163.747  2.143636
17-03-17 17:21:11.508 -07 000000431 INF:   -161.747  2.149205
17-03-17 17:21:11.508 -07 000000431 INF:   -159.747  2.146866
17-03-17 17:21:11.508 -07 000000431 INF:   -157.747  2.144262
17-03-17 17:21:11.508 -07 000000431 INF:   -155.747  2.148146
17-03-17 17:21:11.508 -07 000000431 INF:   -153.747  2.144947
17-03-17 17:21:11.508 -07 000000431 INF:   -151.747  2.13962
17-03-17 17:21:11.508 -07 000000431 INF:   -149.747  2.147994
17-03-17 17:21:11.508 -07 000000431 INF:   -147.747  2.14299
17-03-17 17:21:11.508 -07 000000431 INF:   -145.747  2.146806
17-03-17 17:21:11.508 -07 000000431 INF:   -143.747  2.144932
17-03-17 17:21:11.508 -07 000000431 INF:   -141.747  2.147562
17-03-17 17:21:11.508 -07 000000431 INF:   -139.747  2.143228
17-03-17 17:21:11.508 -07 000000431 INF:   -137.747  2.145015
17-03-17 17:21:11.508 -07 000000431 INF:   -135.747  2.145744
17-03-17 17:21:11.508 -07 000000431 INF:   -133.747  2.151843
17-03-17 17:21:11.508 -07 000000431 INF: Best-focus Z [um]: -173.4605
17-03-17 17:21:11.508 -07 000000431 INF: ===================  ===================
17-03-17 17:21:11.508 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95857 steps, sync = True, waitForSettling = True)
17-03-17 17:21:11.508 -07 000000431 INF: Y Motor: Moving to 59.9105 mm, started at 59.9082 mm, delta = 0.0023 mm
17-03-17 17:21:11.508 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:21:11.518 -07 000000458 INF: FPGA: Recv YRDPOS 122692
17-03-17 17:21:11.518 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:21:11.518 -07 000000431 INF: Y Motor: Encoder = 122692 = motor step 95853.1 = 59.9082 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:21:11.518 -07 000000431 INF: Y Motor: Last commanded position = 59.9105 mm (95856.8 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-17 17:21:11.518 -07 000000431 INF: Y Motor: Moving to 122697 encoder counts
17-03-17 17:21:11.518 -07 000000431 INF: FPGA: Xmit YMVTO 122697\n [Y Motor]
17-03-17 17:21:11.548 -07 000000541 INF: FPGA: Recv YMVTO 122696 10
17-03-17 17:21:11.548 -07 000000431 INF: FPGA: 'YMVTO 122697' command took 0 ms to send, 28 ms to get response, and 37 ms overall
17-03-17 17:21:11.548 -07 000000431 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 17:21:11.548 -07 000000431 INF: Y Motor: To move from 59.908 to 59.910 (0.002 mm) should take 4 steps, but required 10 steps (0.006 mm). Slippage = 0.004 mm (1.65%).
17-03-17 17:21:11.548 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122697' took 37 ms, distance = 0.002 mm, average velocity = 0.062 mm/sec
17-03-17 17:21:14.548 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:21:14.548 -07 000000438 INF: FPGA: Recv YRDPOS 122703
17-03-17 17:21:14.558 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:14.558 -07 000000431 INF: Y Motor: Encoder = 122703 = motor step 95861.7 = 59.9136 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:21:14.558 -07 000000431 INF: Y Motor: After move to 59.910480, error = 0.003094, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:21:14.558 -07 000000431 INF: Y Motor: Position error after settling = 6 encoder counts (0.003 mm), Delta during settling = 7 counts (0.003 mm)
17-03-17 17:21:14.558 -07 000000431 INF: Y Motor: Moved to 59.9136 after 3051 ms
17-03-17 17:21:14.568 -07 000000431 INF: Autofocus image to test SNR (Z position = -179.46 um)
17-03-17 17:21:14.568 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:14.568 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39203, sync = True, waitForSettling = True)
17-03-17 17:21:14.568 -07 000000429 INF: Z Motor: Moving to -0.179460 mm, started at -0.133750 mm, distance = -45.71 um
17-03-17 17:21:14.568 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:14.578 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:14.578 -07 000000429 INF: FPGA: Xmit ZDACW 39203\n [Z Motor]
17-03-17 17:21:14.578 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:21:14.588 -07 000000429 INF: FPGA: 'ZDACW 39203' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:21:14.588 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:14.588 -07 000000561 INF: FPGA: Recv ZDACR 39203
17-03-17 17:21:14.598 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:14.598 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:14.598 -07 000000429 INF: Z Motor: Waiting 500 ms for long move > 40 um
17-03-17 17:21:14.798 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:14.798 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:21:15.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.098 -07 000000561 INF: FPGA: Recv ZSGSRD 37225
17-03-17 17:21:15.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:15.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.108 -07 000000569 INF: FPGA: Recv ZSGSRD 37227
17-03-17 17:21:15.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.118 -07 000000561 INF: FPGA: Recv ZSGSRD 37224
17-03-17 17:21:15.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.128 -07 000000569 INF: FPGA: Recv ZSGSRD 37222
17-03-17 17:21:15.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.138 -07 000000458 INF: FPGA: Recv ZSGSRD 37230
17-03-17 17:21:15.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.148 -07 000000618 INF: FPGA: Recv ZSGSRD 37227
17-03-17 17:21:15.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.158 -07 000000458 INF: FPGA: Recv ZSGSRD 37228
17-03-17 17:21:15.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.168 -07 000000569 INF: FPGA: Recv ZSGSRD 37227
17-03-17 17:21:15.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.178 -07 000000541 INF: FPGA: Recv ZSGSRD 37218
17-03-17 17:21:15.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:15.188 -07 000000618 INF: FPGA: Recv ZSGSRD 37231
17-03-17 17:21:15.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.198 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:15.198 -07 000000438 INF: FPGA: Recv ZPIEZORD 33472
17-03-17 17:21:15.208 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:15.208 -07 000000429 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -8.3 V.
17-03-17 17:21:15.208 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37226 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37227 (-178.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37218 (-178.5 uncal um), Max = 37231 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:21:15.208 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37226, posNoise = 5, negNoise = 8
17-03-17 17:21:15.208 -07 000000429 INF: Z Motor: After move to -0.179460, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:15.208 -07 000000429 INF: Z Motor: MoveAbsStepped took 636 ms)
17-03-17 17:21:15.208 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:15.208 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:15.208 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:15.208 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:15.218 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:15.218 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:15.218 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:15.218 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:15.218 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:15.218 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:15.228 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:15.228 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:21:15.228 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:15.428 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:15.628 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:15.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:15.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:15.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:21:15.818 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:15.818 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:15.818 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:21:16.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:21:16.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:16.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:16.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:21:16.328 -07 000000431 INF: Right edge of AF image detected at column 2624
17-03-17 17:21:16.328 -07 000000431 INF: Image SNR check: start
17-03-17 17:21:16.348 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=80.89]
17-03-17 17:21:16.348 -07 000000431 INF: =================== Collecting Focus Model Data. ===================
17-03-17 17:21:16.348 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:16.348 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:16.358 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:21:16.358 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:16.488 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.086108,
17-03-17 17:21:16.498 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:16.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:16.558 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:16.558 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 17:21:16.558 -07 000000431 INF: Scanning Z-Position: -0.183461
17-03-17 17:21:16.558 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:16.558 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:16.568 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:16.568 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:16.768 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:16.768 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:16.768 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40077, sync = True, waitForSettling = True)
17-03-17 17:21:16.768 -07 000000431 INF: Z Motor: Moving to -0.183461 mm, started at -0.179471 mm, distance = -3.99 um
17-03-17 17:21:16.768 -07 000000431 INF: FPGA: Xmit ZDACW 40077\n [Z Motor]
17-03-17 17:21:16.768 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:21:16.778 -07 000000431 INF: FPGA: 'ZDACW 40077' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:16.778 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:16.778 -07 000000438 INF: FPGA: Recv ZDACR 40077
17-03-17 17:21:16.788 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:16.788 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:16.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:16.938 -07 000000458 INF: FPGA: Recv ZSGSRD 37849
17-03-17 17:21:16.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:16.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:16.948 -07 000000618 INF: FPGA: Recv ZSGSRD 37851
17-03-17 17:21:16.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:16.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:16.958 -07 000000438 INF: FPGA: Recv ZSGSRD 37852
17-03-17 17:21:16.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:16.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:16.968 -07 000000541 INF: FPGA: Recv ZSGSRD 37848
17-03-17 17:21:16.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:16.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:16.978 -07 000000438 INF: FPGA: Recv ZSGSRD 37851
17-03-17 17:21:16.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:16.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:16.988 -07 000000618 INF: FPGA: Recv ZSGSRD 37850
17-03-17 17:21:16.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:16.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:16.998 -07 000000438 INF: FPGA: Recv ZSGSRD 37847
17-03-17 17:21:17.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:17.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:17.008 -07 000000561 INF: FPGA: Recv ZSGSRD 37841
17-03-17 17:21:17.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:17.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:17.018 -07 000000438 INF: FPGA: Recv ZSGSRD 37847
17-03-17 17:21:17.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:17.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:17.028 -07 000000541 INF: FPGA: Recv ZSGSRD 37853
17-03-17 17:21:17.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:17.038 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:17.038 -07 000000438 INF: FPGA: Recv ZPIEZORD 34105
17-03-17 17:21:17.048 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:17.048 -07 000000431 INF: Z Motor: Piezo is near 52.9 V (nominally 0 to 100 V), expect near 61.2 V, since DAC is at 6.115 V. Piezo Error = -8.3 V.
17-03-17 17:21:17.048 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -183.5 um, Read 10 ADC samples: Avg = 37849 (-182.6 uncal um), Error = 0.9 uncal um, Median = 37850 (-182.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37841 (-182.5 uncal um), Max = 37853 (-182.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:21:17.048 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37849, posNoise = 4, negNoise = 8
17-03-17 17:21:17.048 -07 000000431 INF: Z Motor: After move to -0.183461, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:17.048 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:17.048 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:17.048 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:17.048 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:17.048 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:17.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:17.048 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:17.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:21:17.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:17.058 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:17.058 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:17.058 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-17 17:21:17.058 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms.
17-03-17 17:21:17.068 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:17.258 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:17.458 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:17.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:17.458 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:17.478 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:21:17.658 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:17.658 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:17.658 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 589 ms overall
17-03-17 17:21:18.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:21:18.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:18.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:18.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:21:18.158 -07 000000431 INF: Using center-column region for through-focus analysis: Row=512; Col=2048
17-03-17 17:21:18.268 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:18.278 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:18.278 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:18.288 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:18.288 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:18.488 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:18.488 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:18.488 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 41388, sync = True, waitForSettling = True)
17-03-17 17:21:18.488 -07 000000431 INF: Z Motor: Moving to -0.189462 mm, started at -0.183473 mm, distance = -5.99 um
17-03-17 17:21:18.488 -07 000000431 INF: FPGA: Xmit ZDACW 41388\n [Z Motor]
17-03-17 17:21:18.488 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:21:18.498 -07 000000431 INF: FPGA: 'ZDACW 41388' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:18.498 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:18.498 -07 000000561 INF: FPGA: Recv ZDACR 41388
17-03-17 17:21:18.508 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.508 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:18.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.658 -07 000000618 INF: FPGA: Recv ZSGSRD 38783
17-03-17 17:21:18.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:18.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.668 -07 000000429 INF: FPGA: Recv ZSGSRD 38781
17-03-17 17:21:18.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.678 -07 000000438 INF: FPGA: Recv ZSGSRD 38790
17-03-17 17:21:18.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.688 -07 000000541 INF: FPGA: Recv ZSGSRD 38788
17-03-17 17:21:18.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.698 -07 000000618 INF: FPGA: Recv ZSGSRD 38777
17-03-17 17:21:18.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.708 -07 000000618 INF: FPGA: Recv ZSGSRD 38783
17-03-17 17:21:18.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.718 -07 000000561 INF: FPGA: Recv ZSGSRD 38784
17-03-17 17:21:18.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.728 -07 000000429 INF: FPGA: Recv ZSGSRD 38778
17-03-17 17:21:18.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.738 -07 000000541 INF: FPGA: Recv ZSGSRD 38777
17-03-17 17:21:18.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:18.748 -07 000000541 INF: FPGA: Recv ZSGSRD 38782
17-03-17 17:21:18.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.758 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:18.758 -07 000000618 INF: FPGA: Recv ZPIEZORD 34980
17-03-17 17:21:18.768 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:18.768 -07 000000431 INF: Z Motor: Piezo is near 54.7 V (nominally 0 to 100 V), expect near 63.2 V, since DAC is at 6.315 V. Piezo Error = -8.4 V.
17-03-17 17:21:18.768 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -189.5 um, Read 10 ADC samples: Avg = 38782 (-188.5 uncal um), Error = 0.9 uncal um, Median = 38782 (-188.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 38777 (-188.5 uncal um), Max = 38790 (-188.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:21:18.768 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38782, posNoise = 8, negNoise = 5
17-03-17 17:21:18.768 -07 000000431 INF: Z Motor: After move to -0.189462, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:18.768 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:18.768 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:18.768 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:18.768 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:18.768 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:18.768 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:18.768 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:18.778 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:18.778 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:18.778 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:18.778 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:18.788 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:18.788 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:18.798 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:18.988 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:19.188 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:19.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:19.188 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:19.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:21:19.388 -07 000000618 INF: FPGA: Recv @CAMSNAP 587
17-03-17 17:21:19.388 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:19.388 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 592 ms overall
17-03-17 17:21:19.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 579 ms.
17-03-17 17:21:19.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:19.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:19.778 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:21:19.888 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:19.958 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:19.958 -07 000000431 INF: Scanning Z-Position: -0.182961
17-03-17 17:21:19.958 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:19.958 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:19.968 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:19.968 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:20.168 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:20.168 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 17:21:20.168 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39968, sync = True, waitForSettling = True)
17-03-17 17:21:20.168 -07 000000431 INF: Z Motor: Moving to -0.182962 mm, started at -0.189467 mm, distance = 6.51 um
17-03-17 17:21:20.168 -07 000000431 INF: FPGA: Xmit ZDACW 39968\n [Z Motor]
17-03-17 17:21:20.178 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:21:20.178 -07 000000431 INF: FPGA: 'ZDACW 39968' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:21:20.178 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:20.178 -07 000000438 INF: FPGA: Recv ZDACR 39968
17-03-17 17:21:20.188 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.188 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:20.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.338 -07 000000541 INF: FPGA: Recv ZSGSRD 37778
17-03-17 17:21:20.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:20.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.348 -07 000000438 INF: FPGA: Recv ZSGSRD 37767
17-03-17 17:21:20.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.358 -07 000000438 INF: FPGA: Recv ZSGSRD 37766
17-03-17 17:21:20.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.368 -07 000000438 INF: FPGA: Recv ZSGSRD 37768
17-03-17 17:21:20.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.378 -07 000000429 INF: FPGA: Recv ZSGSRD 37766
17-03-17 17:21:20.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.388 -07 000000438 INF: FPGA: Recv ZSGSRD 37773
17-03-17 17:21:20.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.398 -07 000000438 INF: FPGA: Recv ZSGSRD 37771
17-03-17 17:21:20.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.408 -07 000000541 INF: FPGA: Recv ZSGSRD 37771
17-03-17 17:21:20.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.418 -07 000000618 INF: FPGA: Recv ZSGSRD 37773
17-03-17 17:21:20.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:20.428 -07 000000429 INF: FPGA: Recv ZSGSRD 37768
17-03-17 17:21:20.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.438 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:20.438 -07 000000438 INF: FPGA: Recv ZPIEZORD 33578
17-03-17 17:21:20.448 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:20.448 -07 000000431 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 61.0 V, since DAC is at 6.099 V. Piezo Error = -9.3 V.
17-03-17 17:21:20.448 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -183.0 um, Read 10 ADC samples: Avg = 37770 (-182.1 uncal um), Error = 0.9 uncal um, Median = 37770 (-182.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37766 (-182.0 uncal um), Max = 37778 (-182.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:20.448 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37770, posNoise = 8, negNoise = 4
17-03-17 17:21:20.448 -07 000000431 INF: Z Motor: After move to -0.182962, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:20.448 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:21:20.448 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:20.448 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:20.448 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:20.448 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:20.448 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:20.448 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:20.458 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:20.458 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:20.458 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:21:20.458 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:20.468 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:20.468 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:20.468 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:20.668 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:20.868 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:20.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:20.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:20.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:21:21.058 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:21.058 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:21.058 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:21:21.458 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:21.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:21.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:21.458 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:21.488 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:21.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:21.658 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:21.668 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:21.668 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:21.678 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:21.678 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:21.858 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.073868,
17-03-17 17:21:21.878 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:21.878 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 17:21:21.878 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 41279, sync = True, waitForSettling = True)
17-03-17 17:21:21.878 -07 000000431 INF: Z Motor: Moving to -0.188963 mm, started at -0.182966 mm, distance = -6.00 um
17-03-17 17:21:21.888 -07 000000431 INF: FPGA: Xmit ZDACW 41279\n [Z Motor]
17-03-17 17:21:21.888 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:21:21.898 -07 000000431 INF: FPGA: 'ZDACW 41279' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:21:21.898 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:21.898 -07 000000382 INF: FPGA: Recv ZDACR 41279
17-03-17 17:21:21.908 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:21.908 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:22.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.058 -07 000000382 INF: FPGA: Recv ZSGSRD 38701
17-03-17 17:21:22.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:22.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.068 -07 000000382 INF: FPGA: Recv ZSGSRD 38704
17-03-17 17:21:22.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.078 -07 000000480 INF: FPGA: Recv ZSGSRD 38706
17-03-17 17:21:22.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.088 -07 000000382 INF: FPGA: Recv ZSGSRD 38702
17-03-17 17:21:22.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.098 -07 000000480 INF: FPGA: Recv ZSGSRD 38703
17-03-17 17:21:22.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.108 -07 000000382 INF: FPGA: Recv ZSGSRD 38703
17-03-17 17:21:22.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.118 -07 000000382 INF: FPGA: Recv ZSGSRD 38704
17-03-17 17:21:22.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.128 -07 000000382 INF: FPGA: Recv ZSGSRD 38703
17-03-17 17:21:22.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.138 -07 000000382 INF: FPGA: Recv ZSGSRD 38698
17-03-17 17:21:22.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:22.148 -07 000000382 INF: FPGA: Recv ZSGSRD 38706
17-03-17 17:21:22.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.158 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:22.158 -07 000000424 INF: FPGA: Recv ZPIEZORD 34838
17-03-17 17:21:22.168 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:22.168 -07 000000431 INF: Z Motor: Piezo is near 54.4 V (nominally 0 to 100 V), expect near 63.0 V, since DAC is at 6.299 V. Piezo Error = -8.6 V.
17-03-17 17:21:22.168 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -189.0 um, Read 10 ADC samples: Avg = 38703 (-188.0 uncal um), Error = 0.9 uncal um, Median = 38703 (-188.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 38698 (-188.0 uncal um), Max = 38706 (-188.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:21:22.168 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38703, posNoise = 3, negNoise = 5
17-03-17 17:21:22.168 -07 000000431 INF: Z Motor: After move to -0.188963, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:22.168 -07 000000431 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 17:21:22.168 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:22.168 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:22.168 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:22.168 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:22.168 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:22.168 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:22.178 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:22.178 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:22.178 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:22.178 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:22.188 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:22.188 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:22.198 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:22.388 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:22.588 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:22.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:22.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:22.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:21:22.788 -07 000000382 INF: FPGA: Recv @CAMSNAP 588
17-03-17 17:21:22.788 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:22.788 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 596 ms overall
17-03-17 17:21:23.178 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:21:23.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:23.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:23.188 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:21:23.388 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:23.458 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:23.458 -07 000000431 INF: Scanning Z-Position: -0.182461
17-03-17 17:21:23.458 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:23.458 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:23.468 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:23.468 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:23.668 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:23.668 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:23.668 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39859, sync = True, waitForSettling = True)
17-03-17 17:21:23.668 -07 000000431 INF: Z Motor: Moving to -0.182463 mm, started at -0.188960 mm, distance = 6.50 um
17-03-17 17:21:23.668 -07 000000431 INF: FPGA: Xmit ZDACW 39859\n [Z Motor]
17-03-17 17:21:23.668 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:21:23.678 -07 000000431 INF: FPGA: 'ZDACW 39859' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:23.678 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:23.678 -07 000000382 INF: FPGA: Recv ZDACR 39859
17-03-17 17:21:23.688 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.688 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:23.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.838 -07 000000438 INF: FPGA: Recv ZSGSRD 37694
17-03-17 17:21:23.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:23.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.848 -07 000000382 INF: FPGA: Recv ZSGSRD 37694
17-03-17 17:21:23.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.858 -07 000000438 INF: FPGA: Recv ZSGSRD 37691
17-03-17 17:21:23.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.868 -07 000000382 INF: FPGA: Recv ZSGSRD 37690
17-03-17 17:21:23.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.878 -07 000000561 INF: FPGA: Recv ZSGSRD 37693
17-03-17 17:21:23.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.888 -07 000000632 INF: FPGA: Recv ZSGSRD 37696
17-03-17 17:21:23.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.898 -07 000000561 INF: FPGA: Recv ZSGSRD 37698
17-03-17 17:21:23.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.908 -07 000000438 INF: FPGA: Recv ZSGSRD 37689
17-03-17 17:21:23.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.918 -07 000000429 INF: FPGA: Recv ZSGSRD 37693
17-03-17 17:21:23.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:23.928 -07 000000632 INF: FPGA: Recv ZSGSRD 37692
17-03-17 17:21:23.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:23.938 -07 000000438 INF: FPGA: Recv ZPIEZORD 33419
17-03-17 17:21:23.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:23.948 -07 000000431 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 60.8 V, since DAC is at 6.082 V. Piezo Error = -9.4 V.
17-03-17 17:21:23.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -182.5 um, Read 10 ADC samples: Avg = 37693 (-181.6 uncal um), Error = 0.9 uncal um, Median = 37693 (-181.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37689 (-181.5 uncal um), Max = 37698 (-181.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:23.948 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37693, posNoise = 5, negNoise = 4
17-03-17 17:21:23.948 -07 000000431 INF: Z Motor: After move to -0.182463, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:23.948 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:23.948 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:23.948 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:23.948 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:23.948 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:23.948 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:23.948 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:23.958 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:21:23.958 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:23.958 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:23.958 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:23.968 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:23.968 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-17 17:21:23.968 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:24.168 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:24.368 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:24.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:24.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:24.368 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:21:24.558 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:24.558 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:24.558 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:21:24.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:21:24.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:24.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:24.958 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:25.168 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:25.178 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:25.188 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:25.188 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 17:21:25.188 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:25.388 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:25.388 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 17:21:25.388 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 41169, sync = True, waitForSettling = True)
17-03-17 17:21:25.388 -07 000000431 INF: Z Motor: Moving to -0.188460 mm, started at -0.182471 mm, distance = -5.99 um
17-03-17 17:21:25.388 -07 000000431 INF: FPGA: Xmit ZDACW 41169\n [Z Motor]
17-03-17 17:21:25.398 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:21:25.398 -07 000000431 INF: FPGA: 'ZDACW 41169' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:21:25.398 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:25.398 -07 000000438 INF: FPGA: Recv ZDACR 41169
17-03-17 17:21:25.408 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:25.408 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:25.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.558 -07 000000632 INF: FPGA: Recv ZSGSRD 38624
17-03-17 17:21:25.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:25.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.568 -07 000000382 INF: FPGA: Recv ZSGSRD 38626
17-03-17 17:21:25.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.578 -07 000000382 INF: FPGA: Recv ZSGSRD 38625
17-03-17 17:21:25.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.588 -07 000000438 INF: FPGA: Recv ZSGSRD 38621
17-03-17 17:21:25.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.598 -07 000000632 INF: FPGA: Recv ZSGSRD 38628
17-03-17 17:21:25.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.608 -07 000000429 INF: FPGA: Recv ZSGSRD 38628
17-03-17 17:21:25.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.618 -07 000000438 INF: FPGA: Recv ZSGSRD 38627
17-03-17 17:21:25.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.628 -07 000000429 INF: FPGA: Recv ZSGSRD 38623
17-03-17 17:21:25.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.638 -07 000000632 INF: FPGA: Recv ZSGSRD 38621
17-03-17 17:21:25.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:25.648 -07 000000438 INF: FPGA: Recv ZSGSRD 38624
17-03-17 17:21:25.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.658 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:25.658 -07 000000561 INF: FPGA: Recv ZPIEZORD 34678
17-03-17 17:21:25.668 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:25.668 -07 000000431 INF: Z Motor: Piezo is near 54.1 V (nominally 0 to 100 V), expect near 62.8 V, since DAC is at 6.282 V. Piezo Error = -8.7 V.
17-03-17 17:21:25.668 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -188.5 um, Read 10 ADC samples: Avg = 38625 (-187.5 uncal um), Error = 0.9 uncal um, Median = 38624 (-187.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 38621 (-187.5 uncal um), Max = 38628 (-187.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:25.668 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38625, posNoise = 3, negNoise = 4
17-03-17 17:21:25.668 -07 000000431 INF: Z Motor: After move to -0.188460, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:25.668 -07 000000431 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 17:21:25.668 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:25.668 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:25.668 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:25.668 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:25.668 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:25.668 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:25.678 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:25.678 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:25.678 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:25.678 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:25.688 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:25.688 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:21:25.688 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:25.888 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:26.088 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:26.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:26.088 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:26.098 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:21:26.278 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:26.278 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:26.278 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:21:26.488 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:26.678 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:21:26.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:26.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:26.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:21:26.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:26.778 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:26.848 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:26.848 -07 000000431 INF: Scanning Z-Position: -0.181961
17-03-17 17:21:26.848 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:26.848 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:26.858 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:26.858 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:27.058 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:27.058 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:21:27.058 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39749, sync = True, waitForSettling = True)
17-03-17 17:21:27.058 -07 000000431 INF: Z Motor: Moving to -0.181959 mm, started at -0.188459 mm, distance = 6.50 um
17-03-17 17:21:27.058 -07 000000431 INF: FPGA: Xmit ZDACW 39749\n [Z Motor]
17-03-17 17:21:27.058 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:21:27.068 -07 000000431 INF: FPGA: 'ZDACW 39749' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:21:27.068 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:27.068 -07 000000561 INF: FPGA: Recv ZDACR 39749
17-03-17 17:21:27.078 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.078 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:27.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.228 -07 000000632 INF: FPGA: Recv ZSGSRD 37621
17-03-17 17:21:27.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.248 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:21:27.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.268 -07 000000561 INF: FPGA: Recv ZSGSRD 37615
17-03-17 17:21:27.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 11 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:21:27.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.298 -07 000000382 INF: FPGA: Recv ZSGSRD 37617
17-03-17 17:21:27.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:21:27.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.308 -07 000000561 INF: FPGA: Recv ZSGSRD 37617
17-03-17 17:21:27.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.328 -07 000000433 INF: FPGA: Recv ZSGSRD 37619
17-03-17 17:21:27.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:21:27.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.338 -07 000000382 INF: FPGA: Recv ZSGSRD 37616
17-03-17 17:21:27.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.358 -07 000000438 INF: FPGA: Recv ZSGSRD 37613
17-03-17 17:21:27.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:21:27.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.368 -07 000000382 INF: FPGA: Recv ZSGSRD 37611
17-03-17 17:21:27.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.378 -07 000000438 INF: FPGA: Recv ZSGSRD 37619
17-03-17 17:21:27.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:27.388 -07 000000382 INF: FPGA: Recv ZSGSRD 37611
17-03-17 17:21:27.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.398 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:27.398 -07 000000438 INF: FPGA: Recv ZPIEZORD 33315
17-03-17 17:21:27.408 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:27.408 -07 000000431 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 60.7 V, since DAC is at 6.065 V. Piezo Error = -9.5 V.
17-03-17 17:21:27.408 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -182.0 um, Read 10 ADC samples: Avg = 37616 (-181.1 uncal um), Error = 0.9 uncal um, Median = 37616 (-181.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37611 (-181.0 uncal um), Max = 37621 (-181.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:21:27.408 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37616, posNoise = 5, negNoise = 5
17-03-17 17:21:27.408 -07 000000431 INF: Z Motor: After move to -0.181959, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:27.408 -07 000000431 INF: Z Motor: MoveAbsStepped took 344 ms)
17-03-17 17:21:27.408 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:27.408 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:27.408 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:27.408 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:27.408 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:27.408 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:27.418 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:27.418 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:27.418 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:27.418 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:27.428 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:27.428 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:21:27.428 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:27.628 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:27.828 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:27.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:27.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:27.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:21:28.018 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:28.018 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:28.018 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:21:28.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:28.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:28.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:28.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:28.618 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:28.638 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:28.638 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:28.648 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:28.648 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:28.848 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:28.848 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:28.848 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 41060, sync = True, waitForSettling = True)
17-03-17 17:21:28.848 -07 000000431 INF: Z Motor: Moving to -0.187961 mm, started at -0.181977 mm, distance = -5.98 um
17-03-17 17:21:28.848 -07 000000431 INF: FPGA: Xmit ZDACW 41060\n [Z Motor]
17-03-17 17:21:28.848 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:21:28.858 -07 000000431 INF: FPGA: 'ZDACW 41060' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:28.858 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:28.858 -07 000000632 INF: FPGA: Recv ZDACR 41060
17-03-17 17:21:28.868 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:28.868 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:29.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.018 -07 000000382 INF: FPGA: Recv ZSGSRD 38551
17-03-17 17:21:29.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:29.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.028 -07 000000561 INF: FPGA: Recv ZSGSRD 38562
17-03-17 17:21:29.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.038 -07 000000433 INF: FPGA: Recv ZSGSRD 38545
17-03-17 17:21:29.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.048 -07 000000632 INF: FPGA: Recv ZSGSRD 38539
17-03-17 17:21:29.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.058 -07 000000438 INF: FPGA: Recv ZSGSRD 38552
17-03-17 17:21:29.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.068 -07 000000382 INF: FPGA: Recv ZSGSRD 38551
17-03-17 17:21:29.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.078 -07 000000632 INF: FPGA: Recv ZSGSRD 38545
17-03-17 17:21:29.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.088 -07 000000382 INF: FPGA: Recv ZSGSRD 38542
17-03-17 17:21:29.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.098 -07 000000438 INF: FPGA: Recv ZSGSRD 38552
17-03-17 17:21:29.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:29.108 -07 000000433 INF: FPGA: Recv ZSGSRD 38551
17-03-17 17:21:29.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.118 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:29.118 -07 000000632 INF: FPGA: Recv ZPIEZORD 34576
17-03-17 17:21:29.128 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:29.128 -07 000000431 INF: Z Motor: Piezo is near 53.9 V (nominally 0 to 100 V), expect near 62.7 V, since DAC is at 6.265 V. Piezo Error = -8.8 V.
17-03-17 17:21:29.128 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -188.0 um, Read 10 ADC samples: Avg = 38549 (-187.1 uncal um), Error = 0.9 uncal um, Median = 38551 (-187.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 38539 (-187.0 uncal um), Max = 38562 (-187.1 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:21:29.128 -07 000000431 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38549, posNoise = 13, negNoise = 10
17-03-17 17:21:29.128 -07 000000431 INF: Z Motor: After move to -0.187961, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:29.128 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:29.128 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:29.128 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:29.128 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:29.128 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:29.128 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:29.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:29.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:29.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:29.138 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:29.138 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:29.148 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:21:29.148 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:21:29.148 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:29.348 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-17 17:21:29.548 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 393
17-03-17 17:21:29.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 393
17-03-17 17:21:29.548 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:29.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:21:29.738 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:29.738 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:29.738 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:21:30.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:21:30.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:30.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:30.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:21:30.238 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:30.308 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:30.308 -07 000000431 INF: Scanning Z-Position: -0.181461
17-03-17 17:21:30.308 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:30.308 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:30.318 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:30.318 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:30.518 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:30.518 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:30.518 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39640, sync = True, waitForSettling = True)
17-03-17 17:21:30.518 -07 000000431 INF: Z Motor: Moving to -0.181460 mm, started at -0.187970 mm, distance = 6.51 um
17-03-17 17:21:30.518 -07 000000431 INF: FPGA: Xmit ZDACW 39640\n [Z Motor]
17-03-17 17:21:30.518 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:21:30.528 -07 000000431 INF: FPGA: 'ZDACW 39640' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:21:30.528 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:30.528 -07 000000632 INF: FPGA: Recv ZDACR 39640
17-03-17 17:21:30.538 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.538 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:30.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.688 -07 000000632 INF: FPGA: Recv ZSGSRD 37534
17-03-17 17:21:30.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:30.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.698 -07 000000561 INF: FPGA: Recv ZSGSRD 37533
17-03-17 17:21:30.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.708 -07 000000561 INF: FPGA: Recv ZSGSRD 37539
17-03-17 17:21:30.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.718 -07 000000382 INF: FPGA: Recv ZSGSRD 37543
17-03-17 17:21:30.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.728 -07 000000632 INF: FPGA: Recv ZSGSRD 37537
17-03-17 17:21:30.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.738 -07 000000632 INF: FPGA: Recv ZSGSRD 37535
17-03-17 17:21:30.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.748 -07 000000382 INF: FPGA: Recv ZSGSRD 37535
17-03-17 17:21:30.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.758 -07 000000429 INF: FPGA: Recv ZSGSRD 37537
17-03-17 17:21:30.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.768 -07 000000632 INF: FPGA: Recv ZSGSRD 37540
17-03-17 17:21:30.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:30.778 -07 000000382 INF: FPGA: Recv ZSGSRD 37532
17-03-17 17:21:30.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.788 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:30.788 -07 000000561 INF: FPGA: Recv ZPIEZORD 33202
17-03-17 17:21:30.798 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:30.798 -07 000000431 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 60.5 V, since DAC is at 6.049 V. Piezo Error = -9.6 V.
17-03-17 17:21:30.798 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -181.5 um, Read 10 ADC samples: Avg = 37536 (-180.6 uncal um), Error = 0.9 uncal um, Median = 37536 (-180.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37532 (-180.5 uncal um), Max = 37543 (-180.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:30.798 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37536, posNoise = 7, negNoise = 4
17-03-17 17:21:30.798 -07 000000431 INF: Z Motor: After move to -0.181460, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:30.798 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:21:30.798 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:30.798 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:30.798 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:30.798 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:30.798 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:30.808 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:30.808 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:30.808 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:30.808 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:30.808 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:30.818 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:21:30.818 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:21:30.818 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:31.018 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:31.218 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:31.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:31.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:31.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:21:31.408 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:31.408 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:31.408 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:21:31.488 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:31.798 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:21:31.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:31.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:31.808 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:21:31.898 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:31.908 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:31.918 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:31.918 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:31.928 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:31.928 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:32.128 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:32.128 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:32.128 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40951, sync = True, waitForSettling = True)
17-03-17 17:21:32.128 -07 000000431 INF: Z Motor: Moving to -0.187462 mm, started at -0.181463 mm, distance = -6.00 um
17-03-17 17:21:32.128 -07 000000431 INF: FPGA: Xmit ZDACW 40951\n [Z Motor]
17-03-17 17:21:32.128 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:21:32.138 -07 000000431 INF: FPGA: 'ZDACW 40951' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:32.138 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:32.138 -07 000000429 INF: FPGA: Recv ZDACR 40951
17-03-17 17:21:32.148 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.148 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:32.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.298 -07 000000561 INF: FPGA: Recv ZSGSRD 38468
17-03-17 17:21:32.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:32.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.308 -07 000000632 INF: FPGA: Recv ZSGSRD 38471
17-03-17 17:21:32.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.318 -07 000000382 INF: FPGA: Recv ZSGSRD 38475
17-03-17 17:21:32.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.328 -07 000000382 INF: FPGA: Recv ZSGSRD 38472
17-03-17 17:21:32.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.338 -07 000000632 INF: FPGA: Recv ZSGSRD 38473
17-03-17 17:21:32.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.348 -07 000000561 INF: FPGA: Recv ZSGSRD 38467
17-03-17 17:21:32.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.368 -07 000000632 INF: FPGA: Recv ZSGSRD 38476
17-03-17 17:21:32.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:21:32.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.378 -07 000000382 INF: FPGA: Recv ZSGSRD 38462
17-03-17 17:21:32.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.388 -07 000000480 INF: FPGA: Recv ZSGSRD 38464
17-03-17 17:21:32.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:32.398 -07 000000429 INF: FPGA: Recv ZSGSRD 38465
17-03-17 17:21:32.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.408 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:32.408 -07 000000382 INF: FPGA: Recv ZPIEZORD 34492
17-03-17 17:21:32.418 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:32.418 -07 000000431 INF: Z Motor: Piezo is near 53.7 V (nominally 0 to 100 V), expect near 62.5 V, since DAC is at 6.249 V. Piezo Error = -8.8 V.
17-03-17 17:21:32.418 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -187.5 um, Read 10 ADC samples: Avg = 38469 (-186.5 uncal um), Error = 0.9 uncal um, Median = 38470 (-186.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 38462 (-186.5 uncal um), Max = 38476 (-186.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:21:32.418 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38469, posNoise = 7, negNoise = 7
17-03-17 17:21:32.418 -07 000000431 INF: Z Motor: After move to -0.187462, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:32.418 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:21:32.418 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:32.418 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:32.418 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:32.418 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:32.418 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:32.418 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:32.418 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:32.428 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:32.428 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:32.428 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:32.438 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:32.438 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:21:32.438 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:32.638 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:32.678 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06163,
17-03-17 17:21:32.838 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:32.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:32.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:32.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:21:33.028 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:33.038 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:33.038 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 590 ms to get response, and 592 ms overall
17-03-17 17:21:33.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:21:33.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:33.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:33.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:21:33.748 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:33.808 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:33.808 -07 000000431 INF: Scanning Z-Position: -0.180961
17-03-17 17:21:33.818 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:33.818 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:33.828 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:33.828 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:34.028 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:34.028 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:34.028 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39531, sync = True, waitForSettling = True)
17-03-17 17:21:34.028 -07 000000431 INF: Z Motor: Moving to -0.180961 mm, started at -0.187456 mm, distance = 6.50 um
17-03-17 17:21:34.028 -07 000000431 INF: FPGA: Xmit ZDACW 39531\n [Z Motor]
17-03-17 17:21:34.028 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:21:34.038 -07 000000431 INF: FPGA: 'ZDACW 39531' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:34.038 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:34.038 -07 000000424 INF: FPGA: Recv ZDACR 39531
17-03-17 17:21:34.048 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.048 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:34.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.198 -07 000000480 INF: FPGA: Recv ZSGSRD 37460
17-03-17 17:21:34.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:34.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.208 -07 000000424 INF: FPGA: Recv ZSGSRD 37464
17-03-17 17:21:34.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.218 -07 000000561 INF: FPGA: Recv ZSGSRD 37459
17-03-17 17:21:34.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.228 -07 000000569 INF: FPGA: Recv ZSGSRD 37461
17-03-17 17:21:34.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.238 -07 000000382 INF: FPGA: Recv ZSGSRD 37457
17-03-17 17:21:34.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.248 -07 000000429 INF: FPGA: Recv ZSGSRD 37460
17-03-17 17:21:34.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.258 -07 000000618 INF: FPGA: Recv ZSGSRD 37459
17-03-17 17:21:34.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.268 -07 000000618 INF: FPGA: Recv ZSGSRD 37462
17-03-17 17:21:34.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.278 -07 000000618 INF: FPGA: Recv ZSGSRD 37463
17-03-17 17:21:34.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:34.288 -07 000000618 INF: FPGA: Recv ZSGSRD 37458
17-03-17 17:21:34.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.298 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:34.298 -07 000000561 INF: FPGA: Recv ZPIEZORD 33101
17-03-17 17:21:34.308 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:34.308 -07 000000431 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 60.3 V, since DAC is at 6.032 V. Piezo Error = -9.6 V.
17-03-17 17:21:34.308 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -181.0 um, Read 10 ADC samples: Avg = 37460 (-180.1 uncal um), Error = 0.9 uncal um, Median = 37460 (-180.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37457 (-180.1 uncal um), Max = 37464 (-180.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:21:34.308 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37460, posNoise = 4, negNoise = 3
17-03-17 17:21:34.308 -07 000000431 INF: Z Motor: After move to -0.180961, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:34.308 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:34.308 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:34.308 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:34.308 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:34.308 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:34.308 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:34.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:34.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:34.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:34.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:21:34.318 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:34.328 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:34.328 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-17 17:21:34.328 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:34.528 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:34.728 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:34.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:34.728 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:34.728 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:21:34.918 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:34.918 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:34.918 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:21:35.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:21:35.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:35.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:35.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:35.518 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:35.528 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:35.528 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:35.538 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:35.538 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:35.738 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:35.738 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:35.738 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40842, sync = True, waitForSettling = True)
17-03-17 17:21:35.738 -07 000000431 INF: Z Motor: Moving to -0.186963 mm, started at -0.180974 mm, distance = -5.99 um
17-03-17 17:21:35.738 -07 000000431 INF: FPGA: Xmit ZDACW 40842\n [Z Motor]
17-03-17 17:21:35.738 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:21:35.748 -07 000000431 INF: FPGA: 'ZDACW 40842' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:21:35.748 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:35.748 -07 000000627 INF: FPGA: Recv ZDACR 40842
17-03-17 17:21:35.758 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.758 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:35.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.908 -07 000000561 INF: FPGA: Recv ZSGSRD 38393
17-03-17 17:21:35.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:35.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.918 -07 000000561 INF: FPGA: Recv ZSGSRD 38396
17-03-17 17:21:35.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.928 -07 000000561 INF: FPGA: Recv ZSGSRD 38400
17-03-17 17:21:35.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.938 -07 000000561 INF: FPGA: Recv ZSGSRD 38395
17-03-17 17:21:35.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.948 -07 000000618 INF: FPGA: Recv ZSGSRD 38391
17-03-17 17:21:35.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.958 -07 000000561 INF: FPGA: Recv ZSGSRD 38395
17-03-17 17:21:35.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.968 -07 000000561 INF: FPGA: Recv ZSGSRD 38392
17-03-17 17:21:35.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.978 -07 000000632 INF: FPGA: Recv ZSGSRD 38395
17-03-17 17:21:35.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.988 -07 000000561 INF: FPGA: Recv ZSGSRD 38387
17-03-17 17:21:35.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:35.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:35.998 -07 000000632 INF: FPGA: Recv ZSGSRD 38393
17-03-17 17:21:36.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:36.008 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:36.008 -07 000000632 INF: FPGA: Recv ZPIEZORD 34395
17-03-17 17:21:36.018 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:36.018 -07 000000431 INF: Z Motor: Piezo is near 53.5 V (nominally 0 to 100 V), expect near 62.3 V, since DAC is at 6.232 V. Piezo Error = -8.8 V.
17-03-17 17:21:36.018 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -187.0 um, Read 10 ADC samples: Avg = 38394 (-186.1 uncal um), Error = 0.9 uncal um, Median = 38394 (-186.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 38387 (-186.0 uncal um), Max = 38400 (-186.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:21:36.018 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38394, posNoise = 6, negNoise = 7
17-03-17 17:21:36.018 -07 000000431 INF: Z Motor: After move to -0.186963, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:36.018 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:36.018 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:36.018 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:36.018 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:36.018 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:36.018 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:36.018 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:36.018 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:36.018 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:36.028 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:21:36.028 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:36.038 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:36.038 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:21:36.038 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:36.238 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:36.438 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:36.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:36.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:36.438 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:21:36.538 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:36.628 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:36.628 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:36.628 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:21:37.128 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 691 ms.
17-03-17 17:21:37.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:37.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:37.128 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 695 ms.
17-03-17 17:21:37.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:37.228 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:37.298 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:37.298 -07 000000431 INF: Scanning Z-Position: -0.180461
17-03-17 17:21:37.298 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:37.298 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:37.308 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:37.308 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:37.508 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:37.508 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:37.508 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39422, sync = True, waitForSettling = True)
17-03-17 17:21:37.508 -07 000000431 INF: Z Motor: Moving to -0.180462 mm, started at -0.186975 mm, distance = 6.51 um
17-03-17 17:21:37.508 -07 000000431 INF: FPGA: Xmit ZDACW 39422\n [Z Motor]
17-03-17 17:21:37.508 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:21:37.518 -07 000000431 INF: FPGA: 'ZDACW 39422' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:21:37.518 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:37.518 -07 000000632 INF: FPGA: Recv ZDACR 39422
17-03-17 17:21:37.528 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.528 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:37.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.678 -07 000000632 INF: FPGA: Recv ZSGSRD 37379
17-03-17 17:21:37.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:37.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.688 -07 000000618 INF: FPGA: Recv ZSGSRD 37380
17-03-17 17:21:37.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.698 -07 000000632 INF: FPGA: Recv ZSGSRD 37383
17-03-17 17:21:37.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.708 -07 000000561 INF: FPGA: Recv ZSGSRD 37383
17-03-17 17:21:37.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.728 -07 000000618 INF: FPGA: Recv ZSGSRD 37380
17-03-17 17:21:37.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:21:37.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.738 -07 000000632 INF: FPGA: Recv ZSGSRD 37381
17-03-17 17:21:37.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.748 -07 000000541 INF: FPGA: Recv ZSGSRD 37376
17-03-17 17:21:37.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.758 -07 000000541 INF: FPGA: Recv ZSGSRD 37380
17-03-17 17:21:37.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.768 -07 000000632 INF: FPGA: Recv ZSGSRD 37386
17-03-17 17:21:37.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:37.778 -07 000000561 INF: FPGA: Recv ZSGSRD 37382
17-03-17 17:21:37.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.788 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:37.788 -07 000000632 INF: FPGA: Recv ZPIEZORD 32995
17-03-17 17:21:37.798 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:37.798 -07 000000431 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 60.2 V, since DAC is at 6.015 V. Piezo Error = -9.7 V.
17-03-17 17:21:37.798 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -180.5 um, Read 10 ADC samples: Avg = 37381 (-179.6 uncal um), Error = 0.9 uncal um, Median = 37380 (-179.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37376 (-179.5 uncal um), Max = 37386 (-179.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:21:37.798 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37381, posNoise = 5, negNoise = 5
17-03-17 17:21:37.798 -07 000000431 INF: Z Motor: After move to -0.180462, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:37.798 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:21:37.798 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:37.798 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:37.798 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:37.798 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:37.798 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:37.798 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:37.798 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:37.808 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:37.808 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:37.808 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:37.818 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:21:37.818 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:37.818 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:38.018 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:38.038 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.068429,
17-03-17 17:21:38.218 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:38.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:38.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:38.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:21:38.408 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:38.408 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:38.408 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:21:38.808 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:38.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:38.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:38.808 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:39.008 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:39.018 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:39.018 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:39.028 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:21:39.028 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:39.228 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:39.228 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:39.228 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40732, sync = True, waitForSettling = True)
17-03-17 17:21:39.228 -07 000000431 INF: Z Motor: Moving to -0.186459 mm, started at -0.180467 mm, distance = -5.99 um
17-03-17 17:21:39.228 -07 000000431 INF: FPGA: Xmit ZDACW 40732\n [Z Motor]
17-03-17 17:21:39.228 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:21:39.238 -07 000000431 INF: FPGA: 'ZDACW 40732' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:39.238 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:39.238 -07 000000632 INF: FPGA: Recv ZDACR 40732
17-03-17 17:21:39.248 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.248 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:39.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.398 -07 000000382 INF: FPGA: Recv ZSGSRD 38314
17-03-17 17:21:39.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.408 -07 000000618 INF: FPGA: Recv ZSGSRD 38318
17-03-17 17:21:39.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.418 -07 000000438 INF: FPGA: Recv ZSGSRD 38314
17-03-17 17:21:39.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.428 -07 000000433 INF: FPGA: Recv ZSGSRD 38315
17-03-17 17:21:39.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.438 -07 000000618 INF: FPGA: Recv ZSGSRD 38319
17-03-17 17:21:39.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.448 -07 000000618 INF: FPGA: Recv ZSGSRD 38316
17-03-17 17:21:39.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.458 -07 000000561 INF: FPGA: Recv ZSGSRD 38315
17-03-17 17:21:39.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.468 -07 000000632 INF: FPGA: Recv ZSGSRD 38313
17-03-17 17:21:39.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.478 -07 000000632 INF: FPGA: Recv ZSGSRD 38317
17-03-17 17:21:39.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:39.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:39.488 -07 000000541 INF: FPGA: Recv ZSGSRD 38318
17-03-17 17:21:39.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.498 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:39.498 -07 000000632 INF: FPGA: Recv ZPIEZORD 34295
17-03-17 17:21:39.508 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:39.508 -07 000000431 INF: Z Motor: Piezo is near 53.3 V (nominally 0 to 100 V), expect near 62.2 V, since DAC is at 6.215 V. Piezo Error = -8.9 V.
17-03-17 17:21:39.508 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -186.5 um, Read 10 ADC samples: Avg = 38316 (-185.6 uncal um), Error = 0.9 uncal um, Median = 38316 (-185.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 38313 (-185.5 uncal um), Max = 38319 (-185.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:21:39.508 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38316, posNoise = 3, negNoise = 3
17-03-17 17:21:39.508 -07 000000431 INF: Z Motor: After move to -0.186459, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:39.508 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:39.508 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:39.508 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:39.508 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:39.508 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:39.508 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:39.508 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:39.508 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:39.508 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:39.518 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:39.518 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:39.528 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:39.528 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:39.528 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:39.728 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:39.928 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:39.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:39.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:39.928 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:21:40.118 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:40.118 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:40.118 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:21:40.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:21:40.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:40.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:40.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:21:40.718 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:40.788 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:40.788 -07 000000431 INF: Scanning Z-Position: -0.179961
17-03-17 17:21:40.788 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:40.788 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:40.798 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:40.798 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:40.998 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:40.998 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:40.998 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39312, sync = True, waitForSettling = True)
17-03-17 17:21:40.998 -07 000000431 INF: Z Motor: Moving to -0.179959 mm, started at -0.186473 mm, distance = 6.51 um
17-03-17 17:21:40.998 -07 000000431 INF: FPGA: Xmit ZDACW 39312\n [Z Motor]
17-03-17 17:21:40.998 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:21:41.008 -07 000000431 INF: FPGA: 'ZDACW 39312' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:41.008 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:41.008 -07 000000438 INF: FPGA: Recv ZDACR 39312
17-03-17 17:21:41.018 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.018 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:41.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.168 -07 000000433 INF: FPGA: Recv ZSGSRD 37303
17-03-17 17:21:41.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:41.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.178 -07 000000433 INF: FPGA: Recv ZSGSRD 37307
17-03-17 17:21:41.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.188 -07 000000433 INF: FPGA: Recv ZSGSRD 37310
17-03-17 17:21:41.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.198 -07 000000382 INF: FPGA: Recv ZSGSRD 37301
17-03-17 17:21:41.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.208 -07 000000433 INF: FPGA: Recv ZSGSRD 37306
17-03-17 17:21:41.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.218 -07 000000382 INF: FPGA: Recv ZSGSRD 37308
17-03-17 17:21:41.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.228 -07 000000382 INF: FPGA: Recv ZSGSRD 37301
17-03-17 17:21:41.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.238 -07 000000433 INF: FPGA: Recv ZSGSRD 37301
17-03-17 17:21:41.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.248 -07 000000561 INF: FPGA: Recv ZSGSRD 37302
17-03-17 17:21:41.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:41.258 -07 000000433 INF: FPGA: Recv ZSGSRD 37307
17-03-17 17:21:41.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:41.268 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:41.268 -07 000000433 INF: FPGA: Recv ZPIEZORD 32923
17-03-17 17:21:41.278 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:41.278 -07 000000431 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 60.0 V, since DAC is at 5.999 V. Piezo Error = -9.7 V.
17-03-17 17:21:41.278 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -180.0 um, Read 10 ADC samples: Avg = 37305 (-179.1 uncal um), Error = 0.9 uncal um, Median = 37304 (-179.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37301 (-179.1 uncal um), Max = 37310 (-179.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:41.278 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37305, posNoise = 5, negNoise = 4
17-03-17 17:21:41.278 -07 000000431 INF: Z Motor: After move to -0.179959, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:41.278 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:41.278 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:41.278 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:41.278 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:41.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:41.278 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:41.278 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:41.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:41.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:41.288 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:41.288 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:41.298 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:21:41.298 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:21:41.298 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:41.498 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:41.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:41.498 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:41.698 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:41.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:41.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:41.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:21:41.888 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:41.888 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:41.888 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 592 ms overall
17-03-17 17:21:42.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:42.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:42.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:42.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:21:42.388 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:42.398 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:42.398 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:42.408 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:42.408 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:42.608 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:42.608 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:42.608 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40623, sync = True, waitForSettling = True)
17-03-17 17:21:42.608 -07 000000431 INF: Z Motor: Moving to -0.185960 mm, started at -0.179979 mm, distance = -5.98 um
17-03-17 17:21:42.608 -07 000000431 INF: FPGA: Xmit ZDACW 40623\n [Z Motor]
17-03-17 17:21:42.608 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:21:42.618 -07 000000431 INF: FPGA: 'ZDACW 40623' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:21:42.618 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:42.618 -07 000000561 INF: FPGA: Recv ZDACR 40623
17-03-17 17:21:42.628 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.628 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:42.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.778 -07 000000561 INF: FPGA: Recv ZSGSRD 38238
17-03-17 17:21:42.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:42.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.788 -07 000000382 INF: FPGA: Recv ZSGSRD 38239
17-03-17 17:21:42.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.798 -07 000000382 INF: FPGA: Recv ZSGSRD 38238
17-03-17 17:21:42.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.808 -07 000000561 INF: FPGA: Recv ZSGSRD 38237
17-03-17 17:21:42.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.818 -07 000000561 INF: FPGA: Recv ZSGSRD 38235
17-03-17 17:21:42.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.828 -07 000000382 INF: FPGA: Recv ZSGSRD 38235
17-03-17 17:21:42.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.838 -07 000000561 INF: FPGA: Recv ZSGSRD 38241
17-03-17 17:21:42.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.848 -07 000000382 INF: FPGA: Recv ZSGSRD 38233
17-03-17 17:21:42.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.858 -07 000000433 INF: FPGA: Recv ZSGSRD 38240
17-03-17 17:21:42.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:42.868 -07 000000429 INF: FPGA: Recv ZSGSRD 38237
17-03-17 17:21:42.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.878 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:42.878 -07 000000433 INF: FPGA: Recv ZPIEZORD 34174
17-03-17 17:21:42.888 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:42.888 -07 000000431 INF: Z Motor: Piezo is near 53.0 V (nominally 0 to 100 V), expect near 62.0 V, since DAC is at 6.199 V. Piezo Error = -9.0 V.
17-03-17 17:21:42.888 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -186.0 um, Read 10 ADC samples: Avg = 38237 (-185.1 uncal um), Error = 0.9 uncal um, Median = 38238 (-185.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 38233 (-185.0 uncal um), Max = 38241 (-185.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:42.888 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38237, posNoise = 4, negNoise = 4
17-03-17 17:21:42.888 -07 000000431 INF: Z Motor: After move to -0.185960, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:42.888 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:21:42.888 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:42.888 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:42.888 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:42.888 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:42.888 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:42.888 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:42.888 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:42.888 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:42.898 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:42.898 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:42.908 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:21:42.908 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:21:42.908 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:43.108 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:43.308 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:43.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:43.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:43.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:21:43.408 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:21:43.498 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:43.498 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:43.498 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:21:43.888 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:21:43.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:43.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:43.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:21:44.098 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:44.168 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:44.168 -07 000000431 INF: Scanning Z-Position: -0.179461
17-03-17 17:21:44.168 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:44.168 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:44.178 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:44.178 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:44.378 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:44.378 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:44.378 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39203, sync = True, waitForSettling = True)
17-03-17 17:21:44.378 -07 000000431 INF: Z Motor: Moving to -0.179460 mm, started at -0.185966 mm, distance = 6.51 um
17-03-17 17:21:44.378 -07 000000431 INF: FPGA: Xmit ZDACW 39203\n [Z Motor]
17-03-17 17:21:44.378 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:21:44.388 -07 000000431 INF: FPGA: 'ZDACW 39203' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:21:44.388 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:44.388 -07 000000458 INF: FPGA: Recv ZDACR 39203
17-03-17 17:21:44.398 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.398 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:44.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.548 -07 000000569 INF: FPGA: Recv ZSGSRD 37231
17-03-17 17:21:44.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:44.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.558 -07 000000458 INF: FPGA: Recv ZSGSRD 37224
17-03-17 17:21:44.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.568 -07 000000480 INF: FPGA: Recv ZSGSRD 37225
17-03-17 17:21:44.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.578 -07 000000458 INF: FPGA: Recv ZSGSRD 37229
17-03-17 17:21:44.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.588 -07 000000382 INF: FPGA: Recv ZSGSRD 37229
17-03-17 17:21:44.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.598 -07 000000458 INF: FPGA: Recv ZSGSRD 37228
17-03-17 17:21:44.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.608 -07 000000561 INF: FPGA: Recv ZSGSRD 37223
17-03-17 17:21:44.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.618 -07 000000627 INF: FPGA: Recv ZSGSRD 37227
17-03-17 17:21:44.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.628 -07 000000382 INF: FPGA: Recv ZSGSRD 37229
17-03-17 17:21:44.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:44.638 -07 000000627 INF: FPGA: Recv ZSGSRD 37223
17-03-17 17:21:44.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.648 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:44.648 -07 000000458 INF: FPGA: Recv ZPIEZORD 32787
17-03-17 17:21:44.658 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:44.658 -07 000000431 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -9.8 V.
17-03-17 17:21:44.658 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37227 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37228 (-178.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37223 (-178.6 uncal um), Max = 37231 (-178.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:44.658 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37227, posNoise = 4, negNoise = 4
17-03-17 17:21:44.658 -07 000000431 INF: Z Motor: After move to -0.179460, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:44.658 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:21:44.658 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:44.658 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:44.658 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:44.668 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:44.668 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:44.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:44.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:44.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:44.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:44.668 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:44.678 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:21:44.678 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:21:44.678 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:44.878 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:45.078 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:45.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:45.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:45.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) start.
17-03-17 17:21:45.268 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:45.268 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:45.268 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:21:45.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:21:45.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:45.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:45.668 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:21:45.868 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:45.878 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:45.878 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:45.888 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:45.888 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:46.088 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:46.088 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:46.088 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40514, sync = True, waitForSettling = True)
17-03-17 17:21:46.088 -07 000000431 INF: Z Motor: Moving to -0.185461 mm, started at -0.179477 mm, distance = -5.98 um
17-03-17 17:21:46.088 -07 000000431 INF: FPGA: Xmit ZDACW 40514\n [Z Motor]
17-03-17 17:21:46.088 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:21:46.098 -07 000000431 INF: FPGA: 'ZDACW 40514' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:46.098 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:46.098 -07 000000458 INF: FPGA: Recv ZDACR 40514
17-03-17 17:21:46.108 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.108 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:46.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.258 -07 000000458 INF: FPGA: Recv ZSGSRD 38161
17-03-17 17:21:46.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:46.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.268 -07 000000627 INF: FPGA: Recv ZSGSRD 38159
17-03-17 17:21:46.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.278 -07 000000627 INF: FPGA: Recv ZSGSRD 38163
17-03-17 17:21:46.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.288 -07 000000627 INF: FPGA: Recv ZSGSRD 38158
17-03-17 17:21:46.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.298 -07 000000458 INF: FPGA: Recv ZSGSRD 38154
17-03-17 17:21:46.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.308 -07 000000627 INF: FPGA: Recv ZSGSRD 38160
17-03-17 17:21:46.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:46.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.318 -07 000000627 INF: FPGA: Recv ZSGSRD 38161
17-03-17 17:21:46.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.328 -07 000000627 INF: FPGA: Recv ZSGSRD 38157
17-03-17 17:21:46.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.338 -07 000000627 INF: FPGA: Recv ZSGSRD 38155
17-03-17 17:21:46.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:46.348 -07 000000627 INF: FPGA: Recv ZSGSRD 38157
17-03-17 17:21:46.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.358 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:46.358 -07 000000627 INF: FPGA: Recv ZPIEZORD 34067
17-03-17 17:21:46.368 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:46.368 -07 000000431 INF: Z Motor: Piezo is near 52.8 V (nominally 0 to 100 V), expect near 61.8 V, since DAC is at 6.182 V. Piezo Error = -9.0 V.
17-03-17 17:21:46.368 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -185.5 um, Read 10 ADC samples: Avg = 38158 (-184.5 uncal um), Error = 0.9 uncal um, Median = 38158 (-184.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 38154 (-184.5 uncal um), Max = 38163 (-184.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:46.368 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38158, posNoise = 5, negNoise = 4
17-03-17 17:21:46.368 -07 000000431 INF: Z Motor: After move to -0.185461, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:46.368 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:21:46.368 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:46.368 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:46.368 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:46.368 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:46.378 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:46.378 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:46.378 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:46.378 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:46.378 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:46.378 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:46.388 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:46.388 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:21:46.398 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:46.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:46.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:46.598 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:21:46.798 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:21:46.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:21:46.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:46.798 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2199090280, 0x0, 314322768) start.
17-03-17 17:21:46.988 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:46.988 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:46.988 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 589 ms overall
17-03-17 17:21:47.378 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2199090280, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:47.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:47.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:47.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:47.588 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:47.658 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:47.658 -07 000000431 INF: Scanning Z-Position: -0.178961
17-03-17 17:21:47.658 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:47.658 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:47.668 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:47.668 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:47.868 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:47.868 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:47.868 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39094, sync = True, waitForSettling = True)
17-03-17 17:21:47.868 -07 000000431 INF: Z Motor: Moving to -0.178961 mm, started at -0.185458 mm, distance = 6.50 um
17-03-17 17:21:47.868 -07 000000431 INF: FPGA: Xmit ZDACW 39094\n [Z Motor]
17-03-17 17:21:47.868 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:21:47.878 -07 000000431 INF: FPGA: 'ZDACW 39094' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:47.878 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:47.878 -07 000000541 INF: FPGA: Recv ZDACR 39094
17-03-17 17:21:47.888 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:47.888 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:48.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.038 -07 000000627 INF: FPGA: Recv ZSGSRD 37147
17-03-17 17:21:48.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:48.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.048 -07 000000458 INF: FPGA: Recv ZSGSRD 37149
17-03-17 17:21:48.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.058 -07 000000458 INF: FPGA: Recv ZSGSRD 37153
17-03-17 17:21:48.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.068 -07 000000458 INF: FPGA: Recv ZSGSRD 37145
17-03-17 17:21:48.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.078 -07 000000618 INF: FPGA: Recv ZSGSRD 37148
17-03-17 17:21:48.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.088 -07 000000541 INF: FPGA: Recv ZSGSRD 37148
17-03-17 17:21:48.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.098 -07 000000458 INF: FPGA: Recv ZSGSRD 37152
17-03-17 17:21:48.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.108 -07 000000541 INF: FPGA: Recv ZSGSRD 37150
17-03-17 17:21:48.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.118 -07 000000618 INF: FPGA: Recv ZSGSRD 37147
17-03-17 17:21:48.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:48.128 -07 000000458 INF: FPGA: Recv ZSGSRD 37151
17-03-17 17:21:48.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.138 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:48.138 -07 000000618 INF: FPGA: Recv ZPIEZORD 32698
17-03-17 17:21:48.148 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:48.148 -07 000000431 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.965 V. Piezo Error = -9.8 V.
17-03-17 17:21:48.148 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37149 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37148 (-178.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37145 (-178.1 uncal um), Max = 37153 (-178.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:48.148 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37149, posNoise = 4, negNoise = 4
17-03-17 17:21:48.148 -07 000000431 INF: Z Motor: After move to -0.178961, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:48.148 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:48.148 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:48.148 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:48.148 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:48.148 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:48.148 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:48.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:48.158 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:48.158 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:48.158 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:21:48.158 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:48.158 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 5 ms.
17-03-17 17:21:48.158 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms.
17-03-17 17:21:48.168 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:48.368 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:48.568 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:48.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:48.568 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:48.568 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2281705520, 0x0, 314322768) start.
17-03-17 17:21:48.758 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:48.758 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:48.758 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 582 ms to get response, and 589 ms overall
17-03-17 17:21:48.778 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.080668,
17-03-17 17:21:49.148 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2281705520, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:21:49.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:49.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:49.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 587 ms.
17-03-17 17:21:49.358 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:49.368 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:49.368 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:49.378 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:49.378 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:49.578 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:49.578 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:49.578 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40405, sync = True, waitForSettling = True)
17-03-17 17:21:49.578 -07 000000431 INF: Z Motor: Moving to -0.184962 mm, started at -0.178976 mm, distance = -5.99 um
17-03-17 17:21:49.578 -07 000000431 INF: FPGA: Xmit ZDACW 40405\n [Z Motor]
17-03-17 17:21:49.588 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:21:49.588 -07 000000431 INF: FPGA: 'ZDACW 40405' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:21:49.588 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:49.588 -07 000000627 INF: FPGA: Recv ZDACR 40405
17-03-17 17:21:49.598 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.598 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:49.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.748 -07 000000632 INF: FPGA: Recv ZSGSRD 38082
17-03-17 17:21:49.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:49.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.758 -07 000000438 INF: FPGA: Recv ZSGSRD 38089
17-03-17 17:21:49.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.768 -07 000000541 INF: FPGA: Recv ZSGSRD 38085
17-03-17 17:21:49.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.778 -07 000000627 INF: FPGA: Recv ZSGSRD 38076
17-03-17 17:21:49.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.788 -07 000000632 INF: FPGA: Recv ZSGSRD 38087
17-03-17 17:21:49.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.798 -07 000000438 INF: FPGA: Recv ZSGSRD 38079
17-03-17 17:21:49.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.808 -07 000000458 INF: FPGA: Recv ZSGSRD 38080
17-03-17 17:21:49.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.818 -07 000000438 INF: FPGA: Recv ZSGSRD 38088
17-03-17 17:21:49.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.828 -07 000000541 INF: FPGA: Recv ZSGSRD 38081
17-03-17 17:21:49.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:49.838 -07 000000632 INF: FPGA: Recv ZSGSRD 38083
17-03-17 17:21:49.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.848 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:49.848 -07 000000458 INF: FPGA: Recv ZPIEZORD 33996
17-03-17 17:21:49.858 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:49.858 -07 000000431 INF: Z Motor: Piezo is near 52.6 V (nominally 0 to 100 V), expect near 61.7 V, since DAC is at 6.165 V. Piezo Error = -9.0 V.
17-03-17 17:21:49.858 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -185.0 um, Read 10 ADC samples: Avg = 38083 (-184.1 uncal um), Error = 0.9 uncal um, Median = 38082 (-184.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 38076 (-184.0 uncal um), Max = 38089 (-184.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:21:49.858 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38083, posNoise = 6, negNoise = 7
17-03-17 17:21:49.858 -07 000000431 INF: Z Motor: After move to -0.184962, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:49.858 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:21:49.858 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:49.858 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:49.858 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:49.858 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:49.858 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:49.858 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:49.868 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:49.868 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:49.868 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:21:49.868 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:49.878 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:49.878 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:49.878 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:50.078 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:50.278 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:50.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:50.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:50.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2333308008, 0x0, 314322768) start.
17-03-17 17:21:50.468 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:50.468 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:50.468 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:21:50.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2333308008, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:21:50.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:50.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:50.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:21:51.068 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:51.138 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:51.138 -07 000000431 INF: Scanning Z-Position: -0.178461
17-03-17 17:21:51.138 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:51.138 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:51.148 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:51.148 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:51.348 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:51.348 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:51.348 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38985, sync = True, waitForSettling = True)
17-03-17 17:21:51.348 -07 000000431 INF: Z Motor: Moving to -0.178462 mm, started at -0.184977 mm, distance = 6.51 um
17-03-17 17:21:51.348 -07 000000431 INF: FPGA: Xmit ZDACW 38985\n [Z Motor]
17-03-17 17:21:51.348 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:21:51.358 -07 000000431 INF: FPGA: 'ZDACW 38985' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:51.358 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:51.358 -07 000000569 INF: FPGA: Recv ZDACR 38985
17-03-17 17:21:51.368 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.368 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:51.488 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:51.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:51.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.518 -07 000000458 INF: FPGA: Recv ZSGSRD 37072
17-03-17 17:21:51.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:51.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.528 -07 000000569 INF: FPGA: Recv ZSGSRD 37079
17-03-17 17:21:51.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:21:51.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.538 -07 000000458 INF: FPGA: Recv ZSGSRD 37069
17-03-17 17:21:51.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.548 -07 000000458 INF: FPGA: Recv ZSGSRD 37066
17-03-17 17:21:51.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.558 -07 000000569 INF: FPGA: Recv ZSGSRD 37070
17-03-17 17:21:51.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.568 -07 000000458 INF: FPGA: Recv ZSGSRD 37071
17-03-17 17:21:51.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.578 -07 000000569 INF: FPGA: Recv ZSGSRD 37071
17-03-17 17:21:51.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.588 -07 000000569 INF: FPGA: Recv ZSGSRD 37068
17-03-17 17:21:51.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.598 -07 000000569 INF: FPGA: Recv ZSGSRD 37070
17-03-17 17:21:51.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:51.608 -07 000000458 INF: FPGA: Recv ZSGSRD 37072
17-03-17 17:21:51.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.618 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:51.618 -07 000000569 INF: FPGA: Recv ZPIEZORD 32638
17-03-17 17:21:51.628 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:51.628 -07 000000431 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -9.8 V.
17-03-17 17:21:51.628 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37071 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37070 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37066 (-177.5 uncal um), Max = 37079 (-177.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:21:51.628 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37071, posNoise = 8, negNoise = 5
17-03-17 17:21:51.628 -07 000000431 INF: Z Motor: After move to -0.178462, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:51.628 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:51.628 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:51.628 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:51.628 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:51.628 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:51.638 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:51.638 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:51.638 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:51.638 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:51.638 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:51.638 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:51.648 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:51.648 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:21:51.658 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:51.858 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:21:52.058 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:21:52.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:21:52.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:52.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2415923248, 0x0, 314322768) start.
17-03-17 17:21:52.238 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:52.248 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:52.248 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:21:52.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2415923248, 0x0, 314322768) end. Duration was 591 ms.
17-03-17 17:21:52.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:52.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:52.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:21:52.748 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:52.758 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:52.768 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:52.768 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:21:52.768 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:52.968 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:52.968 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:52.968 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40296, sync = True, waitForSettling = True)
17-03-17 17:21:52.968 -07 000000431 INF: Z Motor: Moving to -0.184463 mm, started at -0.178475 mm, distance = -5.99 um
17-03-17 17:21:52.968 -07 000000431 INF: FPGA: Xmit ZDACW 40296\n [Z Motor]
17-03-17 17:21:52.968 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:21:52.978 -07 000000431 INF: FPGA: 'ZDACW 40296' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:21:52.978 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:52.978 -07 000000424 INF: FPGA: Recv ZDACR 40296
17-03-17 17:21:52.988 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:52.988 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:53.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.138 -07 000000561 INF: FPGA: Recv ZSGSRD 38005
17-03-17 17:21:53.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:53.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.148 -07 000000458 INF: FPGA: Recv ZSGSRD 38012
17-03-17 17:21:53.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.158 -07 000000569 INF: FPGA: Recv ZSGSRD 38000
17-03-17 17:21:53.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.168 -07 000000424 INF: FPGA: Recv ZSGSRD 38004
17-03-17 17:21:53.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.178 -07 000000458 INF: FPGA: Recv ZSGSRD 38008
17-03-17 17:21:53.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.188 -07 000000424 INF: FPGA: Recv ZSGSRD 38002
17-03-17 17:21:53.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.198 -07 000000569 INF: FPGA: Recv ZSGSRD 38006
17-03-17 17:21:53.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.208 -07 000000424 INF: FPGA: Recv ZSGSRD 37997
17-03-17 17:21:53.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.218 -07 000000569 INF: FPGA: Recv ZSGSRD 38011
17-03-17 17:21:53.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:53.228 -07 000000561 INF: FPGA: Recv ZSGSRD 38003
17-03-17 17:21:53.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.238 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:53.238 -07 000000569 INF: FPGA: Recv ZPIEZORD 33884
17-03-17 17:21:53.248 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:53.248 -07 000000431 INF: Z Motor: Piezo is near 52.4 V (nominally 0 to 100 V), expect near 61.5 V, since DAC is at 6.149 V. Piezo Error = -9.1 V.
17-03-17 17:21:53.248 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -184.5 um, Read 10 ADC samples: Avg = 38005 (-183.6 uncal um), Error = 0.9 uncal um, Median = 38004 (-183.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37997 (-183.5 uncal um), Max = 38012 (-183.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:21:53.248 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38005, posNoise = 7, negNoise = 8
17-03-17 17:21:53.248 -07 000000431 INF: Z Motor: After move to -0.184463, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:53.248 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:53.248 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:53.248 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:53.248 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:53.248 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:53.248 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:53.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:53.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:21:53.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:53.268 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:53.268 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:53.278 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:21:53.278 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 21 ms.
17-03-17 17:21:53.278 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:53.478 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:53.678 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:53.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:53.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:53.678 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2467525736, 0x0, 314322768) start.
17-03-17 17:21:53.868 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:53.868 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:53.868 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:21:54.148 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.068429,
17-03-17 17:21:54.258 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2467525736, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:21:54.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:54.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:54.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:21:54.368 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:54.438 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:54.438 -07 000000431 INF: Scanning Z-Position: -0.177961
17-03-17 17:21:54.438 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:54.438 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:54.448 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:54.448 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:54.648 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:54.648 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:54.648 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38876, sync = True, waitForSettling = True)
17-03-17 17:21:54.648 -07 000000431 INF: Z Motor: Moving to -0.177963 mm, started at -0.184476 mm, distance = 6.51 um
17-03-17 17:21:54.648 -07 000000431 INF: FPGA: Xmit ZDACW 38876\n [Z Motor]
17-03-17 17:21:54.648 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:21:54.658 -07 000000431 INF: FPGA: 'ZDACW 38876' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:54.658 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:54.658 -07 000000458 INF: FPGA: Recv ZDACR 38876
17-03-17 17:21:54.668 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.668 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:54.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.818 -07 000000382 INF: FPGA: Recv ZSGSRD 36993
17-03-17 17:21:54.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.828 -07 000000458 INF: FPGA: Recv ZSGSRD 36996
17-03-17 17:21:54.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36993
17-03-17 17:21:54.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.848 -07 000000382 INF: FPGA: Recv ZSGSRD 36991
17-03-17 17:21:54.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.858 -07 000000424 INF: FPGA: Recv ZSGSRD 36994
17-03-17 17:21:54.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.868 -07 000000480 INF: FPGA: Recv ZSGSRD 36992
17-03-17 17:21:54.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.878 -07 000000433 INF: FPGA: Recv ZSGSRD 36995
17-03-17 17:21:54.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.888 -07 000000433 INF: FPGA: Recv ZSGSRD 36993
17-03-17 17:21:54.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.898 -07 000000433 INF: FPGA: Recv ZSGSRD 36993
17-03-17 17:21:54.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:54.908 -07 000000458 INF: FPGA: Recv ZSGSRD 36990
17-03-17 17:21:54.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.918 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:54.918 -07 000000433 INF: FPGA: Recv ZPIEZORD 32539
17-03-17 17:21:54.928 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:54.928 -07 000000431 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -9.8 V.
17-03-17 17:21:54.928 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36993 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36993 (-177.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36990 (-177.1 uncal um), Max = 36996 (-177.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:21:54.928 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36993, posNoise = 3, negNoise = 3
17-03-17 17:21:54.928 -07 000000431 INF: Z Motor: After move to -0.177963, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:54.928 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:54.928 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:54.928 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:54.928 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:54.928 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:54.938 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:54.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:54.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:54.938 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:54.938 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:54.938 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:54.948 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:54.948 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:21:54.948 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:55.148 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:55.348 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:55.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:55.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:55.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2550140976, 0x0, 314322768) start.
17-03-17 17:21:55.538 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:55.538 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:55.538 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:21:55.938 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2550140976, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:21:55.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:55.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:55.948 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:21:56.138 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:56.148 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:56.158 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:56.158 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:21:56.158 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:56.358 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:56.358 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:56.358 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40186, sync = True, waitForSettling = True)
17-03-17 17:21:56.358 -07 000000431 INF: Z Motor: Moving to -0.183960 mm, started at -0.177974 mm, distance = -5.99 um
17-03-17 17:21:56.358 -07 000000431 INF: FPGA: Xmit ZDACW 40186\n [Z Motor]
17-03-17 17:21:56.358 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:21:56.368 -07 000000431 INF: FPGA: 'ZDACW 40186' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:56.368 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:56.368 -07 000000433 INF: FPGA: Recv ZDACR 40186
17-03-17 17:21:56.378 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.378 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:56.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:21:56.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:21:56.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.528 -07 000000458 INF: FPGA: Recv ZSGSRD 37924
17-03-17 17:21:56.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:56.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.538 -07 000000458 INF: FPGA: Recv ZSGSRD 37927
17-03-17 17:21:56.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.548 -07 000000433 INF: FPGA: Recv ZSGSRD 37922
17-03-17 17:21:56.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.558 -07 000000433 INF: FPGA: Recv ZSGSRD 37932
17-03-17 17:21:56.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.568 -07 000000433 INF: FPGA: Recv ZSGSRD 37922
17-03-17 17:21:56.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.578 -07 000000433 INF: FPGA: Recv ZSGSRD 37929
17-03-17 17:21:56.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.588 -07 000000458 INF: FPGA: Recv ZSGSRD 37933
17-03-17 17:21:56.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.598 -07 000000433 INF: FPGA: Recv ZSGSRD 37924
17-03-17 17:21:56.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.608 -07 000000433 INF: FPGA: Recv ZSGSRD 37925
17-03-17 17:21:56.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:56.618 -07 000000433 INF: FPGA: Recv ZSGSRD 37923
17-03-17 17:21:56.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:56.628 -07 000000458 INF: FPGA: Recv ZPIEZORD 33814
17-03-17 17:21:56.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:56.638 -07 000000431 INF: Z Motor: Piezo is near 52.2 V (nominally 0 to 100 V), expect near 61.3 V, since DAC is at 6.132 V. Piezo Error = -9.1 V.
17-03-17 17:21:56.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -184.0 um, Read 10 ADC samples: Avg = 37926 (-183.1 uncal um), Error = 0.9 uncal um, Median = 37924 (-183.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37922 (-183.0 uncal um), Max = 37933 (-183.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:21:56.638 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37926, posNoise = 7, negNoise = 4
17-03-17 17:21:56.638 -07 000000431 INF: Z Motor: After move to -0.183960, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:56.638 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:21:56.638 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:56.638 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:56.638 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:56.638 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:56.648 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:56.648 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:56.648 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:56.648 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:56.648 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:21:56.648 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:56.658 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:21:56.658 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:21:56.668 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:56.858 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:57.058 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:57.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:57.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:57.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2601743464, 0x0, 314322768) start.
17-03-17 17:21:57.258 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:57.258 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:57.258 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 589 ms overall
17-03-17 17:21:57.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2601743464, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:21:57.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:57.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:57.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:21:57.758 -07 000000431 INF: MeasureProfile start
17-03-17 17:21:57.828 -07 000000431 INF: MeasureProfile done
17-03-17 17:21:57.828 -07 000000431 INF: Scanning Z-Position: -0.177461
17-03-17 17:21:57.828 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:57.828 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:57.838 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:21:57.838 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:21:58.038 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:21:58.038 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:21:58.038 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38766, sync = True, waitForSettling = True)
17-03-17 17:21:58.038 -07 000000431 INF: Z Motor: Moving to -0.177459 mm, started at -0.183968 mm, distance = 6.51 um
17-03-17 17:21:58.038 -07 000000431 INF: FPGA: Xmit ZDACW 38766\n [Z Motor]
17-03-17 17:21:58.038 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:21:58.048 -07 000000431 INF: FPGA: 'ZDACW 38766' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:58.048 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:58.048 -07 000000618 INF: FPGA: Recv ZDACR 38766
17-03-17 17:21:58.058 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.058 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:21:58.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.208 -07 000000632 INF: FPGA: Recv ZSGSRD 36914
17-03-17 17:21:58.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:21:58.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.218 -07 000000618 INF: FPGA: Recv ZSGSRD 36915
17-03-17 17:21:58.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.228 -07 000000458 INF: FPGA: Recv ZSGSRD 36918
17-03-17 17:21:58.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.238 -07 000000429 INF: FPGA: Recv ZSGSRD 36917
17-03-17 17:21:58.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.248 -07 000000541 INF: FPGA: Recv ZSGSRD 36910
17-03-17 17:21:58.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.258 -07 000000618 INF: FPGA: Recv ZSGSRD 36914
17-03-17 17:21:58.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.268 -07 000000632 INF: FPGA: Recv ZSGSRD 36915
17-03-17 17:21:58.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36917
17-03-17 17:21:58.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.288 -07 000000433 INF: FPGA: Recv ZSGSRD 36911
17-03-17 17:21:58.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:21:58.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36917
17-03-17 17:21:58.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.308 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:21:58.308 -07 000000433 INF: FPGA: Recv ZPIEZORD 32424
17-03-17 17:21:58.318 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:58.318 -07 000000431 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -9.9 V.
17-03-17 17:21:58.318 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36915 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36915 (-176.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36910 (-176.5 uncal um), Max = 36918 (-176.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:21:58.318 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36915, posNoise = 3, negNoise = 5
17-03-17 17:21:58.318 -07 000000431 INF: Z Motor: After move to -0.177459, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:21:58.318 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:21:58.318 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:21:58.318 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:21:58.318 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:21:58.318 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:21:58.318 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:21:58.318 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:21:58.318 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:21:58.318 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:21:58.328 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:21:58.328 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:21:58.338 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:21:58.338 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:21:58.338 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:21:58.538 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:21:58.738 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:21:58.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:21:58.738 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:21:58.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2684358704, 0x0, 314322768) start.
17-03-17 17:21:58.928 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:21:58.928 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:21:58.928 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:21:59.328 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2684358704, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:21:59.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:21:59.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:21:59.328 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:21:59.518 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.083353,
17-03-17 17:21:59.668 -07 000000431 INF: ComputeBrenner start
17-03-17 17:21:59.688 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:21:59.688 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:21:59.698 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:21:59.708 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:21:59.908 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:21:59.908 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:21:59.908 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 40077, sync = True, waitForSettling = True)
17-03-17 17:21:59.908 -07 000000431 INF: Z Motor: Moving to -0.183461 mm, started at -0.177473 mm, distance = -5.99 um
17-03-17 17:21:59.908 -07 000000431 INF: FPGA: Xmit ZDACW 40077\n [Z Motor]
17-03-17 17:21:59.908 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:21:59.918 -07 000000431 INF: FPGA: 'ZDACW 40077' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:21:59.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:21:59.918 -07 000000632 INF: FPGA: Recv ZDACR 40077
17-03-17 17:21:59.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:21:59.928 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:00.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.078 -07 000000541 INF: FPGA: Recv ZSGSRD 37846
17-03-17 17:22:00.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:00.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.088 -07 000000561 INF: FPGA: Recv ZSGSRD 37847
17-03-17 17:22:00.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.098 -07 000000433 INF: FPGA: Recv ZSGSRD 37844
17-03-17 17:22:00.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.108 -07 000000458 INF: FPGA: Recv ZSGSRD 37845
17-03-17 17:22:00.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.118 -07 000000627 INF: FPGA: Recv ZSGSRD 37855
17-03-17 17:22:00.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.128 -07 000000627 INF: FPGA: Recv ZSGSRD 37846
17-03-17 17:22:00.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.138 -07 000000561 INF: FPGA: Recv ZSGSRD 37851
17-03-17 17:22:00.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.148 -07 000000458 INF: FPGA: Recv ZSGSRD 37847
17-03-17 17:22:00.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.158 -07 000000561 INF: FPGA: Recv ZSGSRD 37846
17-03-17 17:22:00.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:00.168 -07 000000632 INF: FPGA: Recv ZSGSRD 37849
17-03-17 17:22:00.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.178 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:00.178 -07 000000632 INF: FPGA: Recv ZPIEZORD 33685
17-03-17 17:22:00.188 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:00.188 -07 000000431 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 61.2 V, since DAC is at 6.115 V. Piezo Error = -9.2 V.
17-03-17 17:22:00.188 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -183.5 um, Read 10 ADC samples: Avg = 37848 (-182.6 uncal um), Error = 0.9 uncal um, Median = 37846 (-182.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37844 (-182.5 uncal um), Max = 37855 (-182.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:00.188 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37848, posNoise = 7, negNoise = 4
17-03-17 17:22:00.188 -07 000000431 INF: Z Motor: After move to -0.183461, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:00.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:22:00.188 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:00.188 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:00.188 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:00.188 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:00.198 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:00.198 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:00.198 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:00.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:00.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:00.198 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:00.208 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:00.208 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:22:00.218 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:00.418 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:00.618 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:00.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:00.618 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:00.618 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:00.808 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:00.808 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:00.808 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall
17-03-17 17:22:01.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:22:01.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:01.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:01.208 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:22:01.408 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:01.478 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:01.478 -07 000000431 INF: Scanning Z-Position: -0.176961
17-03-17 17:22:01.478 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:01.478 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:01.488 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:22:01.488 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:01.488 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:01.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:01.688 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:01.688 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:22:01.688 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38657, sync = True, waitForSettling = True)
17-03-17 17:22:01.688 -07 000000431 INF: Z Motor: Moving to -0.176960 mm, started at -0.183467 mm, distance = 6.51 um
17-03-17 17:22:01.688 -07 000000431 INF: FPGA: Xmit ZDACW 38657\n [Z Motor]
17-03-17 17:22:01.688 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:22:01.698 -07 000000431 INF: FPGA: 'ZDACW 38657' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:22:01.698 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:01.698 -07 000000561 INF: FPGA: Recv ZDACR 38657
17-03-17 17:22:01.708 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.708 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:01.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.858 -07 000000382 INF: FPGA: Recv ZSGSRD 36838
17-03-17 17:22:01.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:01.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.868 -07 000000632 INF: FPGA: Recv ZSGSRD 36834
17-03-17 17:22:01.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.878 -07 000000382 INF: FPGA: Recv ZSGSRD 36837
17-03-17 17:22:01.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.888 -07 000000561 INF: FPGA: Recv ZSGSRD 36832
17-03-17 17:22:01.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.898 -07 000000382 INF: FPGA: Recv ZSGSRD 36841
17-03-17 17:22:01.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.908 -07 000000632 INF: FPGA: Recv ZSGSRD 36845
17-03-17 17:22:01.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.918 -07 000000632 INF: FPGA: Recv ZSGSRD 36839
17-03-17 17:22:01.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.928 -07 000000632 INF: FPGA: Recv ZSGSRD 36838
17-03-17 17:22:01.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.938 -07 000000632 INF: FPGA: Recv ZSGSRD 36834
17-03-17 17:22:01.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:01.948 -07 000000632 INF: FPGA: Recv ZSGSRD 36836
17-03-17 17:22:01.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.958 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:01.958 -07 000000382 INF: FPGA: Recv ZPIEZORD 32329
17-03-17 17:22:01.968 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:01.968 -07 000000431 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -9.9 V.
17-03-17 17:22:01.968 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36837 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36838 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36832 (-176.0 uncal um), Max = 36845 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:01.968 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36837, posNoise = 8, negNoise = 5
17-03-17 17:22:01.968 -07 000000431 INF: Z Motor: After move to -0.176960, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:01.968 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:22:01.968 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:01.968 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:01.968 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:01.968 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:01.968 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:01.968 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:01.978 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:01.978 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:01.978 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:01.978 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:01.988 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:01.988 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:22:01.988 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:02.188 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:02.388 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:02.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:02.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:02.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:02.578 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:02.578 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:02.578 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:22:02.968 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:22:02.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:02.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:02.978 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:22:03.178 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:03.188 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:03.198 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:03.208 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:03.208 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:03.408 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:03.408 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:03.408 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39968, sync = True, waitForSettling = True)
17-03-17 17:22:03.408 -07 000000431 INF: Z Motor: Moving to -0.182962 mm, started at -0.176972 mm, distance = -5.99 um
17-03-17 17:22:03.408 -07 000000431 INF: FPGA: Xmit ZDACW 39968\n [Z Motor]
17-03-17 17:22:03.408 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:22:03.418 -07 000000431 INF: FPGA: 'ZDACW 39968' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:03.418 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:03.418 -07 000000632 INF: FPGA: Recv ZDACR 39968
17-03-17 17:22:03.428 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.428 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:03.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.578 -07 000000561 INF: FPGA: Recv ZSGSRD 37770
17-03-17 17:22:03.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:03.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.588 -07 000000382 INF: FPGA: Recv ZSGSRD 37768
17-03-17 17:22:03.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.598 -07 000000569 INF: FPGA: Recv ZSGSRD 37773
17-03-17 17:22:03.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.608 -07 000000438 INF: FPGA: Recv ZSGSRD 37774
17-03-17 17:22:03.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.618 -07 000000569 INF: FPGA: Recv ZSGSRD 37770
17-03-17 17:22:03.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.628 -07 000000438 INF: FPGA: Recv ZSGSRD 37773
17-03-17 17:22:03.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.638 -07 000000632 INF: FPGA: Recv ZSGSRD 37769
17-03-17 17:22:03.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.648 -07 000000438 INF: FPGA: Recv ZSGSRD 37771
17-03-17 17:22:03.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.658 -07 000000632 INF: FPGA: Recv ZSGSRD 37771
17-03-17 17:22:03.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:03.668 -07 000000424 INF: FPGA: Recv ZSGSRD 37767
17-03-17 17:22:03.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.678 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:03.678 -07 000000569 INF: FPGA: Recv ZPIEZORD 33602
17-03-17 17:22:03.688 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:03.688 -07 000000431 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 61.0 V, since DAC is at 6.099 V. Piezo Error = -9.2 V.
17-03-17 17:22:03.688 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -183.0 um, Read 10 ADC samples: Avg = 37771 (-182.1 uncal um), Error = 0.9 uncal um, Median = 37770 (-182.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37767 (-182.0 uncal um), Max = 37774 (-182.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:03.688 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37771, posNoise = 3, negNoise = 4
17-03-17 17:22:03.688 -07 000000431 INF: Z Motor: After move to -0.182962, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:03.688 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:03.688 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:03.688 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:03.688 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:03.688 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:03.688 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:03.688 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:03.698 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:03.698 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:03.698 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:03.698 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:03.708 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:03.708 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:03.708 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:03.908 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:04.108 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:04.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:04.108 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:04.118 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:04.298 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:04.298 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:04.298 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:22:04.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:22:04.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:04.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:04.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:22:04.798 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:04.868 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:04.868 -07 000000431 INF: Scanning Z-Position: -0.176461
17-03-17 17:22:04.868 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:04.868 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:04.878 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:04.888 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:05.028 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.069789,
17-03-17 17:22:05.088 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:05.088 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 17:22:05.088 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38548, sync = True, waitForSettling = True)
17-03-17 17:22:05.088 -07 000000431 INF: Z Motor: Moving to -0.176461 mm, started at -0.182972 mm, distance = 6.51 um
17-03-17 17:22:05.088 -07 000000431 INF: FPGA: Xmit ZDACW 38548\n [Z Motor]
17-03-17 17:22:05.088 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:22:05.098 -07 000000431 INF: FPGA: 'ZDACW 38548' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:05.098 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:05.098 -07 000000480 INF: FPGA: Recv ZDACR 38548
17-03-17 17:22:05.108 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.108 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:05.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36757
17-03-17 17:22:05.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 7 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:05.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36766
17-03-17 17:22:05.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.278 -07 000000627 INF: FPGA: Recv ZSGSRD 36761
17-03-17 17:22:05.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.288 -07 000000541 INF: FPGA: Recv ZSGSRD 36757
17-03-17 17:22:05.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.298 -07 000000561 INF: FPGA: Recv ZSGSRD 36754
17-03-17 17:22:05.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.308 -07 000000561 INF: FPGA: Recv ZSGSRD 36755
17-03-17 17:22:05.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36760
17-03-17 17:22:05.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.348 -07 000000458 INF: FPGA: Recv ZSGSRD 36759
17-03-17 17:22:05.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:22:05.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.358 -07 000000458 INF: FPGA: Recv ZSGSRD 36756
17-03-17 17:22:05.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:05.388 -07 000000627 INF: FPGA: Recv ZSGSRD 36757
17-03-17 17:22:05.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:22:05.398 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:05.398 -07 000000627 INF: FPGA: Recv ZPIEZORD 32232
17-03-17 17:22:05.408 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:05.408 -07 000000431 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -10.0 V.
17-03-17 17:22:05.408 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36758 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36757 (-175.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36754 (-175.5 uncal um), Max = 36766 (-175.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:05.408 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36758, posNoise = 8, negNoise = 4
17-03-17 17:22:05.408 -07 000000431 INF: Z Motor: After move to -0.176461, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:05.408 -07 000000431 INF: Z Motor: MoveAbsStepped took 316 ms)
17-03-17 17:22:05.408 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:05.408 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:05.408 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:05.408 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:05.418 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:05.418 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:05.418 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:22:05.418 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:05.418 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:05.418 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:05.428 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:05.428 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:22:05.428 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:05.628 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:05.828 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:05.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:05.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:05.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:06.018 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:06.018 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:06.018 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:22:06.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:22:06.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:06.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:06.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:22:06.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:06.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:06.518 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:06.538 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:06.538 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:06.548 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:06.548 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:06.748 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:06.748 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:06.748 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39859, sync = True, waitForSettling = True)
17-03-17 17:22:06.748 -07 000000431 INF: Z Motor: Moving to -0.182463 mm, started at -0.176465 mm, distance = -6.00 um
17-03-17 17:22:06.748 -07 000000431 INF: FPGA: Xmit ZDACW 39859\n [Z Motor]
17-03-17 17:22:06.748 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:22:06.758 -07 000000431 INF: FPGA: 'ZDACW 39859' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:06.758 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:06.758 -07 000000438 INF: FPGA: Recv ZDACR 39859
17-03-17 17:22:06.768 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.768 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:06.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.918 -07 000000627 INF: FPGA: Recv ZSGSRD 37692
17-03-17 17:22:06.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:06.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.928 -07 000000438 INF: FPGA: Recv ZSGSRD 37697
17-03-17 17:22:06.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.938 -07 000000438 INF: FPGA: Recv ZSGSRD 37698
17-03-17 17:22:06.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.948 -07 000000438 INF: FPGA: Recv ZSGSRD 37693
17-03-17 17:22:06.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.958 -07 000000627 INF: FPGA: Recv ZSGSRD 37700
17-03-17 17:22:06.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.968 -07 000000438 INF: FPGA: Recv ZSGSRD 37698
17-03-17 17:22:06.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.978 -07 000000627 INF: FPGA: Recv ZSGSRD 37695
17-03-17 17:22:06.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.988 -07 000000618 INF: FPGA: Recv ZSGSRD 37693
17-03-17 17:22:06.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:06.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:06.998 -07 000000627 INF: FPGA: Recv ZSGSRD 37693
17-03-17 17:22:07.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:07.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:07.008 -07 000000627 INF: FPGA: Recv ZSGSRD 37698
17-03-17 17:22:07.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:07.018 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:07.018 -07 000000618 INF: FPGA: Recv ZPIEZORD 33507
17-03-17 17:22:07.028 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:07.028 -07 000000431 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 60.8 V, since DAC is at 6.082 V. Piezo Error = -9.2 V.
17-03-17 17:22:07.028 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -182.5 um, Read 10 ADC samples: Avg = 37696 (-181.6 uncal um), Error = 0.9 uncal um, Median = 37696 (-181.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37692 (-181.6 uncal um), Max = 37700 (-181.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:07.028 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37696, posNoise = 4, negNoise = 4
17-03-17 17:22:07.028 -07 000000431 INF: Z Motor: After move to -0.182463, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:07.028 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:07.028 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:07.028 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:07.028 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:07.028 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:07.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:07.028 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:07.038 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:07.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:07.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:07.038 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:07.038 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-17 17:22:07.038 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms.
17-03-17 17:22:07.048 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:07.248 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:07.448 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:07.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:07.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:07.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:22:07.638 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:07.638 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:07.638 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:22:08.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 591 ms.
17-03-17 17:22:08.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:08.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:08.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-17 17:22:08.348 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:08.418 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:08.418 -07 000000431 INF: Scanning Z-Position: -0.175961
17-03-17 17:22:08.418 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:08.418 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:08.428 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:08.428 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:08.628 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:08.628 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:08.628 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38439, sync = True, waitForSettling = True)
17-03-17 17:22:08.628 -07 000000431 INF: Z Motor: Moving to -0.175962 mm, started at -0.182490 mm, distance = 6.53 um
17-03-17 17:22:08.628 -07 000000431 INF: FPGA: Xmit ZDACW 38439\n [Z Motor]
17-03-17 17:22:08.628 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:22:08.638 -07 000000431 INF: FPGA: 'ZDACW 38439' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:08.638 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:08.638 -07 000000569 INF: FPGA: Recv ZDACR 38439
17-03-17 17:22:08.648 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.648 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:08.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.798 -07 000000424 INF: FPGA: Recv ZSGSRD 36683
17-03-17 17:22:08.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:08.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.808 -07 000000480 INF: FPGA: Recv ZSGSRD 36683
17-03-17 17:22:08.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.818 -07 000000424 INF: FPGA: Recv ZSGSRD 36686
17-03-17 17:22:08.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.828 -07 000000458 INF: FPGA: Recv ZSGSRD 36684
17-03-17 17:22:08.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.838 -07 000000458 INF: FPGA: Recv ZSGSRD 36674
17-03-17 17:22:08.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.848 -07 000000569 INF: FPGA: Recv ZSGSRD 36684
17-03-17 17:22:08.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.858 -07 000000438 INF: FPGA: Recv ZSGSRD 36687
17-03-17 17:22:08.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:08.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.868 -07 000000627 INF: FPGA: Recv ZSGSRD 36677
17-03-17 17:22:08.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.878 -07 000000618 INF: FPGA: Recv ZSGSRD 36683
17-03-17 17:22:08.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:08.888 -07 000000429 INF: FPGA: Recv ZSGSRD 36679
17-03-17 17:22:08.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.898 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:08.898 -07 000000618 INF: FPGA: Recv ZPIEZORD 32127
17-03-17 17:22:08.908 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:08.908 -07 000000431 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -10.0 V.
17-03-17 17:22:08.908 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36682 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36683 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36674 (-175.0 uncal um), Max = 36687 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:22:08.908 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36682, posNoise = 5, negNoise = 8
17-03-17 17:22:08.908 -07 000000431 INF: Z Motor: After move to -0.175962, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:08.908 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:08.908 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:08.908 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:08.908 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:08.908 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:08.908 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:08.908 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:08.908 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:08.908 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:08.918 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:08.918 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:08.928 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:08.928 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:22:08.928 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:09.128 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:09.328 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:09.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:09.328 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:09.328 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:22:09.518 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:09.518 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:09.518 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:22:09.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:22:09.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:09.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:09.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:22:10.018 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:10.028 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:10.028 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:10.038 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:10.038 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:10.238 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:10.238 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:22:10.238 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39749, sync = True, waitForSettling = True)
17-03-17 17:22:10.238 -07 000000431 INF: Z Motor: Moving to -0.181959 mm, started at -0.175976 mm, distance = -5.98 um
17-03-17 17:22:10.238 -07 000000431 INF: FPGA: Xmit ZDACW 39749\n [Z Motor]
17-03-17 17:22:10.248 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:22:10.248 -07 000000431 INF: FPGA: 'ZDACW 39749' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:10.248 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:10.248 -07 000000424 INF: FPGA: Recv ZDACR 39749
17-03-17 17:22:10.258 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.258 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:10.388 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.050752,
17-03-17 17:22:10.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.408 -07 000000382 INF: FPGA: Recv ZSGSRD 37611
17-03-17 17:22:10.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.438 -07 000000569 INF: FPGA: Recv ZSGSRD 37611
17-03-17 17:22:10.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:22:10.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.448 -07 000000541 INF: FPGA: Recv ZSGSRD 37619
17-03-17 17:22:10.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.468 -07 000000480 INF: FPGA: Recv ZSGSRD 37618
17-03-17 17:22:10.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:22:10.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.478 -07 000000438 INF: FPGA: Recv ZSGSRD 37617
17-03-17 17:22:10.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.488 -07 000000438 INF: FPGA: Recv ZSGSRD 37611
17-03-17 17:22:10.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.498 -07 000000382 INF: FPGA: Recv ZSGSRD 37606
17-03-17 17:22:10.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.508 -07 000000382 INF: FPGA: Recv ZSGSRD 37616
17-03-17 17:22:10.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.518 -07 000000382 INF: FPGA: Recv ZSGSRD 37618
17-03-17 17:22:10.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:10.528 -07 000000458 INF: FPGA: Recv ZSGSRD 37617
17-03-17 17:22:10.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.538 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:10.538 -07 000000382 INF: FPGA: Recv ZPIEZORD 33401
17-03-17 17:22:10.548 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:10.548 -07 000000431 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 60.7 V, since DAC is at 6.065 V. Piezo Error = -9.3 V.
17-03-17 17:22:10.548 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -182.0 um, Read 10 ADC samples: Avg = 37614 (-181.1 uncal um), Error = 0.9 uncal um, Median = 37616 (-181.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37606 (-181.0 uncal um), Max = 37619 (-181.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:22:10.548 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37614, posNoise = 5, negNoise = 8
17-03-17 17:22:10.548 -07 000000431 INF: Z Motor: After move to -0.181959, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:10.548 -07 000000431 INF: Z Motor: MoveAbsStepped took 304 ms)
17-03-17 17:22:10.548 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:10.548 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:10.548 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:10.548 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:10.548 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:10.548 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:10.558 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:10.558 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:10.558 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:10.558 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:10.568 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:10.568 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:22:10.568 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:10.768 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:10.968 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:10.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:10.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:10.968 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:11.158 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:11.158 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:11.158 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:22:11.488 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:11.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:22:11.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:11.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:11.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:22:11.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:11.758 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:11.928 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:11.928 -07 000000431 INF: Scanning Z-Position: -0.175461
17-03-17 17:22:11.928 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:11.938 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:11.938 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:22:11.938 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:12.138 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:12.138 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:22:12.138 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38329, sync = True, waitForSettling = True)
17-03-17 17:22:12.138 -07 000000431 INF: Z Motor: Moving to -0.175459 mm, started at -0.181964 mm, distance = 6.50 um
17-03-17 17:22:12.138 -07 000000431 INF: FPGA: Xmit ZDACW 38329\n [Z Motor]
17-03-17 17:22:12.148 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:22:12.148 -07 000000431 INF: FPGA: 'ZDACW 38329' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:12.148 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:12.148 -07 000000458 INF: FPGA: Recv ZDACR 38329
17-03-17 17:22:12.158 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.158 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:12.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.308 -07 000000458 INF: FPGA: Recv ZSGSRD 36601
17-03-17 17:22:12.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:12.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.318 -07 000000569 INF: FPGA: Recv ZSGSRD 36609
17-03-17 17:22:12.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.328 -07 000000382 INF: FPGA: Recv ZSGSRD 36602
17-03-17 17:22:12.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.338 -07 000000382 INF: FPGA: Recv ZSGSRD 36602
17-03-17 17:22:12.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.348 -07 000000561 INF: FPGA: Recv ZSGSRD 36605
17-03-17 17:22:12.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.358 -07 000000458 INF: FPGA: Recv ZSGSRD 36601
17-03-17 17:22:12.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.368 -07 000000382 INF: FPGA: Recv ZSGSRD 36607
17-03-17 17:22:12.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36606
17-03-17 17:22:12.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.388 -07 000000433 INF: FPGA: Recv ZSGSRD 36607
17-03-17 17:22:12.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:12.398 -07 000000618 INF: FPGA: Recv ZSGSRD 36604
17-03-17 17:22:12.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.408 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:12.408 -07 000000561 INF: FPGA: Recv ZPIEZORD 32048
17-03-17 17:22:12.418 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:12.418 -07 000000431 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -10.0 V.
17-03-17 17:22:12.418 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36604 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36604 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36601 (-174.6 uncal um), Max = 36609 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:22:12.418 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36604, posNoise = 5, negNoise = 3
17-03-17 17:22:12.418 -07 000000431 INF: Z Motor: After move to -0.175459, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:12.418 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:22:12.418 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:12.418 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:12.418 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:12.418 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:12.418 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:12.418 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:12.418 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:22:12.418 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:12.428 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:12.428 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:12.438 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:12.438 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:12.438 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:12.638 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:12.838 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:12.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:12.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:12.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:22:13.028 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:13.028 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:13.028 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:22:13.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:22:13.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:13.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:13.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:22:13.628 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:13.638 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:13.638 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:13.648 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:13.648 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:13.848 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:13.848 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:13.848 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39640, sync = True, waitForSettling = True)
17-03-17 17:22:13.848 -07 000000431 INF: Z Motor: Moving to -0.181460 mm, started at -0.175475 mm, distance = -5.99 um
17-03-17 17:22:13.848 -07 000000431 INF: FPGA: Xmit ZDACW 39640\n [Z Motor]
17-03-17 17:22:13.858 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:22:13.858 -07 000000431 INF: FPGA: 'ZDACW 39640' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:13.858 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:13.858 -07 000000632 INF: FPGA: Recv ZDACR 39640
17-03-17 17:22:13.868 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:13.868 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:14.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.018 -07 000000569 INF: FPGA: Recv ZSGSRD 37534
17-03-17 17:22:14.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:14.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.028 -07 000000561 INF: FPGA: Recv ZSGSRD 37547
17-03-17 17:22:14.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.038 -07 000000382 INF: FPGA: Recv ZSGSRD 37540
17-03-17 17:22:14.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.048 -07 000000632 INF: FPGA: Recv ZSGSRD 37538
17-03-17 17:22:14.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.058 -07 000000433 INF: FPGA: Recv ZSGSRD 37535
17-03-17 17:22:14.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.068 -07 000000561 INF: FPGA: Recv ZSGSRD 37539
17-03-17 17:22:14.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.078 -07 000000569 INF: FPGA: Recv ZSGSRD 37541
17-03-17 17:22:14.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.088 -07 000000429 INF: FPGA: Recv ZSGSRD 37532
17-03-17 17:22:14.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.098 -07 000000561 INF: FPGA: Recv ZSGSRD 37537
17-03-17 17:22:14.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:14.108 -07 000000618 INF: FPGA: Recv ZSGSRD 37538
17-03-17 17:22:14.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.118 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:14.118 -07 000000433 INF: FPGA: Recv ZPIEZORD 33332
17-03-17 17:22:14.128 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:14.128 -07 000000431 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 60.5 V, since DAC is at 6.049 V. Piezo Error = -9.3 V.
17-03-17 17:22:14.128 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -181.5 um, Read 10 ADC samples: Avg = 37538 (-180.6 uncal um), Error = 0.9 uncal um, Median = 37538 (-180.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37532 (-180.5 uncal um), Max = 37547 (-180.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:22:14.128 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37538, posNoise = 9, negNoise = 6
17-03-17 17:22:14.128 -07 000000431 INF: Z Motor: After move to -0.181460, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:14.128 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:22:14.128 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:14.128 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:14.128 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:14.128 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:14.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:14.128 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:14.138 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:14.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:14.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:14.138 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:14.148 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:14.148 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:22:14.148 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:14.348 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:14.548 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:14.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:14.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:14.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:14.748 -07 000000424 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:14.748 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:14.748 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 592 ms overall
17-03-17 17:22:15.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:22:15.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:15.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:15.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:22:15.248 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:15.318 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:15.318 -07 000000431 INF: Scanning Z-Position: -0.174961
17-03-17 17:22:15.318 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:15.318 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:15.328 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:15.328 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:15.528 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:15.528 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:15.528 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38220, sync = True, waitForSettling = True)
17-03-17 17:22:15.528 -07 000000431 INF: Z Motor: Moving to -0.174960 mm, started at -0.181475 mm, distance = 6.52 um
17-03-17 17:22:15.528 -07 000000431 INF: FPGA: Xmit ZDACW 38220\n [Z Motor]
17-03-17 17:22:15.528 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:22:15.538 -07 000000431 INF: FPGA: 'ZDACW 38220' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:15.538 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:15.538 -07 000000632 INF: FPGA: Recv ZDACR 38220
17-03-17 17:22:15.548 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.548 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:15.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.698 -07 000000424 INF: FPGA: Recv ZSGSRD 36530
17-03-17 17:22:15.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:15.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.708 -07 000000433 INF: FPGA: Recv ZSGSRD 36528
17-03-17 17:22:15.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36525
17-03-17 17:22:15.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.728 -07 000000433 INF: FPGA: Recv ZSGSRD 36528
17-03-17 17:22:15.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.738 -07 000000429 INF: FPGA: Recv ZSGSRD 36527
17-03-17 17:22:15.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.748 -07 000000429 INF: FPGA: Recv ZSGSRD 36521
17-03-17 17:22:15.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36523
17-03-17 17:22:15.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.768 -07 000000429 INF: FPGA: Recv ZSGSRD 36526
17-03-17 17:22:15.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:15.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.798 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.033041,
17-03-17 17:22:15.798 -07 000000632 INF: FPGA: Recv ZSGSRD 36523
17-03-17 17:22:15.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:22:15.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:15.828 -07 000000433 INF: FPGA: Recv ZSGSRD 36527
17-03-17 17:22:15.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:22:15.838 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:15.838 -07 000000433 INF: FPGA: Recv ZPIEZORD 31953
17-03-17 17:22:15.848 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:15.848 -07 000000431 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -10.1 V.
17-03-17 17:22:15.848 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36526 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36526 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36521 (-174.1 uncal um), Max = 36530 (-174.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:15.848 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36526, posNoise = 4, negNoise = 5
17-03-17 17:22:15.848 -07 000000431 INF: Z Motor: After move to -0.174960, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:15.848 -07 000000431 INF: Z Motor: MoveAbsStepped took 314 ms)
17-03-17 17:22:15.848 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:15.848 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:15.848 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:15.848 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:15.858 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:15.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:15.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:15.858 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:15.858 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 5 ms.
17-03-17 17:22:15.858 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:15.878 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:15.878 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-17 17:22:15.878 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:16.078 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:16.278 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:16.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:16.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:16.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:22:16.468 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:16.468 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:16.468 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:22:16.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:16.968 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 691 ms.
17-03-17 17:22:16.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:16.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:16.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 696 ms.
17-03-17 17:22:17.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:17.168 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:17.178 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:17.178 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:17.188 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:22:17.188 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:17.388 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:17.388 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:17.388 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39531, sync = True, waitForSettling = True)
17-03-17 17:22:17.388 -07 000000431 INF: Z Motor: Moving to -0.180961 mm, started at -0.174974 mm, distance = -5.99 um
17-03-17 17:22:17.388 -07 000000431 INF: FPGA: Xmit ZDACW 39531\n [Z Motor]
17-03-17 17:22:17.388 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:22:17.398 -07 000000431 INF: FPGA: 'ZDACW 39531' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:22:17.398 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:17.398 -07 000000433 INF: FPGA: Recv ZDACR 39531
17-03-17 17:22:17.408 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.408 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:17.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.558 -07 000000627 INF: FPGA: Recv ZSGSRD 37459
17-03-17 17:22:17.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:17.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.568 -07 000000632 INF: FPGA: Recv ZSGSRD 37457
17-03-17 17:22:17.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.578 -07 000000632 INF: FPGA: Recv ZSGSRD 37459
17-03-17 17:22:17.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.588 -07 000000632 INF: FPGA: Recv ZSGSRD 37461
17-03-17 17:22:17.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.598 -07 000000632 INF: FPGA: Recv ZSGSRD 37460
17-03-17 17:22:17.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.608 -07 000000541 INF: FPGA: Recv ZSGSRD 37456
17-03-17 17:22:17.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.618 -07 000000438 INF: FPGA: Recv ZSGSRD 37459
17-03-17 17:22:17.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.628 -07 000000632 INF: FPGA: Recv ZSGSRD 37457
17-03-17 17:22:17.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.638 -07 000000438 INF: FPGA: Recv ZSGSRD 37464
17-03-17 17:22:17.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:17.648 -07 000000480 INF: FPGA: Recv ZSGSRD 37454
17-03-17 17:22:17.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.658 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:17.658 -07 000000627 INF: FPGA: Recv ZPIEZORD 33218
17-03-17 17:22:17.668 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:17.668 -07 000000431 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 60.3 V, since DAC is at 6.032 V. Piezo Error = -9.4 V.
17-03-17 17:22:17.668 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -181.0 um, Read 10 ADC samples: Avg = 37459 (-180.1 uncal um), Error = 0.9 uncal um, Median = 37459 (-180.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37454 (-180.0 uncal um), Max = 37464 (-180.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:17.668 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37459, posNoise = 5, negNoise = 5
17-03-17 17:22:17.668 -07 000000431 INF: Z Motor: After move to -0.180961, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:17.668 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:17.668 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:17.668 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:17.668 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:17.668 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:17.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:17.668 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:17.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:17.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:17.678 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:17.678 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:17.688 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:17.688 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:17.688 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:17.888 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:18.088 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:18.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:18.088 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:18.088 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:18.278 -07 000000424 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:18.278 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:18.278 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:22:18.668 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:22:18.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:18.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:18.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:22:18.778 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:18.848 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:18.848 -07 000000431 INF: Scanning Z-Position: -0.174461
17-03-17 17:22:18.848 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:18.848 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:18.858 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:18.858 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:19.058 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:19.058 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 17:22:19.058 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38111, sync = True, waitForSettling = True)
17-03-17 17:22:19.058 -07 000000431 INF: Z Motor: Moving to -0.174461 mm, started at -0.180968 mm, distance = 6.51 um
17-03-17 17:22:19.058 -07 000000431 INF: FPGA: Xmit ZDACW 38111\n [Z Motor]
17-03-17 17:22:19.068 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:22:19.068 -07 000000431 INF: FPGA: 'ZDACW 38111' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:22:19.068 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:19.068 -07 000000438 INF: FPGA: Recv ZDACR 38111
17-03-17 17:22:19.078 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:19.078 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:19.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.228 -07 000000632 INF: FPGA: Recv ZSGSRD 36446
17-03-17 17:22:19.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:19.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36450
17-03-17 17:22:19.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.248 -07 000000433 INF: FPGA: Recv ZSGSRD 36447
17-03-17 17:22:19.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.258 -07 000000480 INF: FPGA: Recv ZSGSRD 36444
17-03-17 17:22:19.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.268 -07 000000627 INF: FPGA: Recv ZSGSRD 36450
17-03-17 17:22:19.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 14 ms overall
17-03-17 17:22:19.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.278 -07 000000632 INF: FPGA: Recv ZSGSRD 36453
17-03-17 17:22:19.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:22:19.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36448
17-03-17 17:22:19.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.298 -07 000000632 INF: FPGA: Recv ZSGSRD 36445
17-03-17 17:22:19.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.308 -07 000000433 INF: FPGA: Recv ZSGSRD 36443
17-03-17 17:22:19.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:19.318 -07 000000632 INF: FPGA: Recv ZSGSRD 36446
17-03-17 17:22:19.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.328 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:19.328 -07 000000480 INF: FPGA: Recv ZPIEZORD 31887
17-03-17 17:22:19.338 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:19.338 -07 000000431 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.815 V. Piezo Error = -10.0 V.
17-03-17 17:22:19.338 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36447 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36446 (-173.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36443 (-173.6 uncal um), Max = 36453 (-173.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:19.338 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36447, posNoise = 6, negNoise = 4
17-03-17 17:22:19.338 -07 000000431 INF: Z Motor: After move to -0.174461, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:19.338 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:22:19.338 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:19.338 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:19.338 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:19.338 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:19.338 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:19.338 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:19.348 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:22:19.348 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:19.348 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:19.348 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:19.358 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:22:19.358 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms.
17-03-17 17:22:19.358 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:19.558 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:19.758 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:19.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:19.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:19.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:22:19.948 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:19.948 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:19.948 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:22:20.348 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:22:20.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:20.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:20.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:22:20.448 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:20.458 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:20.458 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:20.468 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:20.468 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:20.668 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:20.668 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:20.668 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39422, sync = True, waitForSettling = True)
17-03-17 17:22:20.668 -07 000000431 INF: Z Motor: Moving to -0.180462 mm, started at -0.174467 mm, distance = -6.00 um
17-03-17 17:22:20.668 -07 000000431 INF: FPGA: Xmit ZDACW 39422\n [Z Motor]
17-03-17 17:22:20.668 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:22:20.678 -07 000000431 INF: FPGA: 'ZDACW 39422' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:20.678 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:20.678 -07 000000438 INF: FPGA: Recv ZDACR 39422
17-03-17 17:22:20.688 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.688 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:20.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.838 -07 000000541 INF: FPGA: Recv ZSGSRD 37382
17-03-17 17:22:20.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:20.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.848 -07 000000438 INF: FPGA: Recv ZSGSRD 37388
17-03-17 17:22:20.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.858 -07 000000480 INF: FPGA: Recv ZSGSRD 37379
17-03-17 17:22:20.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.878 -07 000000627 INF: FPGA: Recv ZSGSRD 37380
17-03-17 17:22:20.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:22:20.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.888 -07 000000632 INF: FPGA: Recv ZSGSRD 37378
17-03-17 17:22:20.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.898 -07 000000433 INF: FPGA: Recv ZSGSRD 37386
17-03-17 17:22:20.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.908 -07 000000541 INF: FPGA: Recv ZSGSRD 37378
17-03-17 17:22:20.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.918 -07 000000541 INF: FPGA: Recv ZSGSRD 37384
17-03-17 17:22:20.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.928 -07 000000541 INF: FPGA: Recv ZSGSRD 37382
17-03-17 17:22:20.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:20.938 -07 000000541 INF: FPGA: Recv ZSGSRD 37386
17-03-17 17:22:20.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.948 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:20.948 -07 000000627 INF: FPGA: Recv ZPIEZORD 33122
17-03-17 17:22:20.958 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:20.958 -07 000000431 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 60.2 V, since DAC is at 6.015 V. Piezo Error = -9.4 V.
17-03-17 17:22:20.958 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -180.5 um, Read 10 ADC samples: Avg = 37382 (-179.6 uncal um), Error = 0.9 uncal um, Median = 37382 (-179.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37378 (-179.5 uncal um), Max = 37388 (-179.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:20.958 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37382, posNoise = 6, negNoise = 4
17-03-17 17:22:20.958 -07 000000431 INF: Z Motor: After move to -0.180462, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:20.958 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:22:20.958 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:20.958 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:20.958 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:20.958 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:20.968 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:20.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:20.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:20.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:20.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:20.968 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:20.978 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:20.978 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:20.978 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:21.178 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:21.188 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.049392,
17-03-17 17:22:21.378 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:21.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:21.378 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:21.378 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:22:21.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:21.568 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:21.568 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:21.568 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:22:21.968 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:22:21.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:21.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:21.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:22:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:22.068 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:22.138 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:22.138 -07 000000431 INF: Scanning Z-Position: -0.173961
17-03-17 17:22:22.138 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:22.138 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:22.148 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:22:22.148 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:22.348 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:22.348 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:22.348 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38002, sync = True, waitForSettling = True)
17-03-17 17:22:22.348 -07 000000431 INF: Z Motor: Moving to -0.173962 mm, started at -0.180473 mm, distance = 6.51 um
17-03-17 17:22:22.348 -07 000000431 INF: FPGA: Xmit ZDACW 38002\n [Z Motor]
17-03-17 17:22:22.348 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:22:22.358 -07 000000431 INF: FPGA: 'ZDACW 38002' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:22.358 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:22.358 -07 000000438 INF: FPGA: Recv ZDACR 38002
17-03-17 17:22:22.368 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.368 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:22.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.518 -07 000000627 INF: FPGA: Recv ZSGSRD 36370
17-03-17 17:22:22.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:22.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.528 -07 000000561 INF: FPGA: Recv ZSGSRD 36369
17-03-17 17:22:22.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.538 -07 000000569 INF: FPGA: Recv ZSGSRD 36369
17-03-17 17:22:22.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.548 -07 000000438 INF: FPGA: Recv ZSGSRD 36371
17-03-17 17:22:22.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.558 -07 000000569 INF: FPGA: Recv ZSGSRD 36369
17-03-17 17:22:22.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.568 -07 000000627 INF: FPGA: Recv ZSGSRD 36370
17-03-17 17:22:22.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.578 -07 000000569 INF: FPGA: Recv ZSGSRD 36365
17-03-17 17:22:22.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.588 -07 000000433 INF: FPGA: Recv ZSGSRD 36370
17-03-17 17:22:22.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.598 -07 000000438 INF: FPGA: Recv ZSGSRD 36366
17-03-17 17:22:22.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:22.608 -07 000000433 INF: FPGA: Recv ZSGSRD 36366
17-03-17 17:22:22.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.618 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:22.618 -07 000000438 INF: FPGA: Recv ZPIEZORD 31776
17-03-17 17:22:22.628 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:22.628 -07 000000431 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -10.1 V.
17-03-17 17:22:22.628 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36368 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36369 (-173.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36365 (-173.1 uncal um), Max = 36371 (-173.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:22:22.628 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36368, posNoise = 3, negNoise = 3
17-03-17 17:22:22.628 -07 000000431 INF: Z Motor: After move to -0.173962, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:22.628 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:22.628 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:22.628 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:22.628 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:22.628 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:22.628 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:22.628 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:22.628 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:22.628 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:22.638 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:22.638 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:22.648 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:22.648 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:22:22.648 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:22.848 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:23.048 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:23.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:23.048 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:23.048 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:22:23.238 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:23.238 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:23.238 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:22:23.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:22:23.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:23.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:23.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:22:23.968 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:23.978 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:23.978 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:23.988 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:22:23.988 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:24.188 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:24.188 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:24.188 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39312, sync = True, waitForSettling = True)
17-03-17 17:22:24.188 -07 000000431 INF: Z Motor: Moving to -0.179959 mm, started at -0.173959 mm, distance = -6.00 um
17-03-17 17:22:24.188 -07 000000431 INF: FPGA: Xmit ZDACW 39312\n [Z Motor]
17-03-17 17:22:24.188 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:22:24.198 -07 000000431 INF: FPGA: 'ZDACW 39312' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:24.198 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:24.198 -07 000000627 INF: FPGA: Recv ZDACR 39312
17-03-17 17:22:24.208 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.208 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:24.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.358 -07 000000627 INF: FPGA: Recv ZSGSRD 37304
17-03-17 17:22:24.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:24.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.368 -07 000000632 INF: FPGA: Recv ZSGSRD 37305
17-03-17 17:22:24.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.378 -07 000000561 INF: FPGA: Recv ZSGSRD 37308
17-03-17 17:22:24.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.388 -07 000000632 INF: FPGA: Recv ZSGSRD 37308
17-03-17 17:22:24.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.398 -07 000000627 INF: FPGA: Recv ZSGSRD 37306
17-03-17 17:22:24.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.408 -07 000000632 INF: FPGA: Recv ZSGSRD 37304
17-03-17 17:22:24.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.418 -07 000000561 INF: FPGA: Recv ZSGSRD 37301
17-03-17 17:22:24.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.428 -07 000000438 INF: FPGA: Recv ZSGSRD 37303
17-03-17 17:22:24.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.438 -07 000000627 INF: FPGA: Recv ZSGSRD 37302
17-03-17 17:22:24.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:24.448 -07 000000438 INF: FPGA: Recv ZSGSRD 37305
17-03-17 17:22:24.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.458 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:24.458 -07 000000627 INF: FPGA: Recv ZPIEZORD 33059
17-03-17 17:22:24.468 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:24.468 -07 000000431 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 60.0 V, since DAC is at 5.999 V. Piezo Error = -9.4 V.
17-03-17 17:22:24.468 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -180.0 um, Read 10 ADC samples: Avg = 37305 (-179.1 uncal um), Error = 0.9 uncal um, Median = 37304 (-179.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37301 (-179.1 uncal um), Max = 37308 (-179.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:24.468 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37305, posNoise = 3, negNoise = 4
17-03-17 17:22:24.468 -07 000000431 INF: Z Motor: After move to -0.179959, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:24.468 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:22:24.468 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:24.468 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:24.468 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:24.468 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:24.468 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:24.468 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:24.478 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:24.478 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:24.478 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:24.478 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:24.488 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:24.488 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:24.488 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:24.688 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:24.888 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:24.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:24.888 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:24.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:25.078 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:25.078 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:25.078 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:22:25.478 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 579 ms.
17-03-17 17:22:25.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:25.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:25.478 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:22:25.678 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:25.748 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:25.748 -07 000000431 INF: Scanning Z-Position: -0.173461
17-03-17 17:22:25.748 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:25.748 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:25.758 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:22:25.758 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:25.958 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:25.958 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:25.958 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37893, sync = True, waitForSettling = True)
17-03-17 17:22:25.958 -07 000000431 INF: Z Motor: Moving to -0.173463 mm, started at -0.179979 mm, distance = 6.52 um
17-03-17 17:22:25.958 -07 000000431 INF: FPGA: Xmit ZDACW 37893\n [Z Motor]
17-03-17 17:22:25.958 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:22:25.968 -07 000000431 INF: FPGA: 'ZDACW 37893' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:25.968 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:25.968 -07 000000429 INF: FPGA: Recv ZDACR 37893
17-03-17 17:22:25.978 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:25.978 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:26.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.128 -07 000000541 INF: FPGA: Recv ZSGSRD 36295
17-03-17 17:22:26.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:26.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36289
17-03-17 17:22:26.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36295
17-03-17 17:22:26.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.158 -07 000000569 INF: FPGA: Recv ZSGSRD 36292
17-03-17 17:22:26.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.168 -07 000000480 INF: FPGA: Recv ZSGSRD 36290
17-03-17 17:22:26.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.178 -07 000000458 INF: FPGA: Recv ZSGSRD 36295
17-03-17 17:22:26.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.188 -07 000000458 INF: FPGA: Recv ZSGSRD 36291
17-03-17 17:22:26.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.198 -07 000000541 INF: FPGA: Recv ZSGSRD 36295
17-03-17 17:22:26.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.208 -07 000000541 INF: FPGA: Recv ZSGSRD 36292
17-03-17 17:22:26.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:26.218 -07 000000458 INF: FPGA: Recv ZSGSRD 36289
17-03-17 17:22:26.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:26.238 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:26.238 -07 000000541 INF: FPGA: Recv ZPIEZORD 31707
17-03-17 17:22:26.248 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:22:26.248 -07 000000431 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.782 V. Piezo Error = -10.1 V.
17-03-17 17:22:26.248 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36292 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36292 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36289 (-172.6 uncal um), Max = 36295 (-172.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:22:26.248 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36292, posNoise = 3, negNoise = 3
17-03-17 17:22:26.248 -07 000000431 INF: Z Motor: After move to -0.173463, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:26.248 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:22:26.248 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:26.248 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:26.248 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:26.248 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:26.258 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:26.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:26.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:26.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:26.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:26.258 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:26.268 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:22:26.268 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:22:26.268 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:26.468 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:26.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:26.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:26.548 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.043918,
17-03-17 17:22:26.668 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:26.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:26.668 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:26.668 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:26.858 -07 000000458 INF: FPGA: Recv @CAMSNAP 586
17-03-17 17:22:26.858 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:26.858 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 590 ms overall
17-03-17 17:22:27.258 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:22:27.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:27.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:27.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:22:27.558 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:27.578 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:27.578 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:27.588 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:27.588 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:27.788 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:27.788 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:27.788 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39203, sync = True, waitForSettling = True)
17-03-17 17:22:27.788 -07 000000431 INF: Z Motor: Moving to -0.179460 mm, started at -0.173471 mm, distance = -5.99 um
17-03-17 17:22:27.788 -07 000000431 INF: FPGA: Xmit ZDACW 39203\n [Z Motor]
17-03-17 17:22:27.788 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:22:27.798 -07 000000431 INF: FPGA: 'ZDACW 39203' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:27.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:27.798 -07 000000458 INF: FPGA: Recv ZDACR 39203
17-03-17 17:22:27.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:27.808 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:27.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:27.958 -07 000000541 INF: FPGA: Recv ZSGSRD 37228
17-03-17 17:22:27.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:27.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:27.968 -07 000000424 INF: FPGA: Recv ZSGSRD 37235
17-03-17 17:22:27.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:27.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:27.978 -07 000000561 INF: FPGA: Recv ZSGSRD 37225
17-03-17 17:22:27.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:27.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:27.988 -07 000000433 INF: FPGA: Recv ZSGSRD 37223
17-03-17 17:22:27.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:27.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:27.998 -07 000000627 INF: FPGA: Recv ZSGSRD 37226
17-03-17 17:22:28.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:28.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:28.008 -07 000000424 INF: FPGA: Recv ZSGSRD 37228
17-03-17 17:22:28.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:28.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:28.018 -07 000000433 INF: FPGA: Recv ZSGSRD 37224
17-03-17 17:22:28.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:28.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:28.028 -07 000000424 INF: FPGA: Recv ZSGSRD 37224
17-03-17 17:22:28.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:28.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:28.038 -07 000000433 INF: FPGA: Recv ZSGSRD 37226
17-03-17 17:22:28.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:28.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:28.048 -07 000000541 INF: FPGA: Recv ZSGSRD 37228
17-03-17 17:22:28.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:28.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:28.058 -07 000000627 INF: FPGA: Recv ZPIEZORD 32944
17-03-17 17:22:28.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:28.068 -07 000000431 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -9.4 V.
17-03-17 17:22:28.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37227 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37226 (-178.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37223 (-178.6 uncal um), Max = 37235 (-178.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:28.068 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37227, posNoise = 8, negNoise = 4
17-03-17 17:22:28.068 -07 000000431 INF: Z Motor: After move to -0.179460, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:28.068 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:28.068 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:28.068 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:28.068 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:28.068 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:28.068 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:28.068 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:28.078 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:28.078 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:28.078 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:28.078 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:28.088 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:28.088 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:22:28.088 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:28.288 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:28.488 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:28.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:28.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:28.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:28.678 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:28.678 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:28.678 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:22:29.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:22:29.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:29.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:29.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:22:29.178 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:29.248 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:29.248 -07 000000431 INF: Scanning Z-Position: -0.172961
17-03-17 17:22:29.248 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:29.248 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:29.258 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:29.258 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:29.458 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:29.458 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:22:29.458 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37783, sync = True, waitForSettling = True)
17-03-17 17:22:29.458 -07 000000431 INF: Z Motor: Moving to -0.172959 mm, started at -0.179477 mm, distance = 6.52 um
17-03-17 17:22:29.458 -07 000000431 INF: FPGA: Xmit ZDACW 37783\n [Z Motor]
17-03-17 17:22:29.458 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:22:29.468 -07 000000431 INF: FPGA: 'ZDACW 37783' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:29.468 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:29.468 -07 000000561 INF: FPGA: Recv ZDACR 37783
17-03-17 17:22:29.478 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:29.478 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:29.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.628 -07 000000424 INF: FPGA: Recv ZSGSRD 36220
17-03-17 17:22:29.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:29.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.638 -07 000000627 INF: FPGA: Recv ZSGSRD 36212
17-03-17 17:22:29.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.648 -07 000000433 INF: FPGA: Recv ZSGSRD 36211
17-03-17 17:22:29.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.658 -07 000000627 INF: FPGA: Recv ZSGSRD 36215
17-03-17 17:22:29.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.668 -07 000000541 INF: FPGA: Recv ZSGSRD 36213
17-03-17 17:22:29.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.678 -07 000000424 INF: FPGA: Recv ZSGSRD 36218
17-03-17 17:22:29.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.688 -07 000000541 INF: FPGA: Recv ZSGSRD 36212
17-03-17 17:22:29.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.698 -07 000000627 INF: FPGA: Recv ZSGSRD 36213
17-03-17 17:22:29.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.708 -07 000000424 INF: FPGA: Recv ZSGSRD 36220
17-03-17 17:22:29.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:29.718 -07 000000627 INF: FPGA: Recv ZSGSRD 36213
17-03-17 17:22:29.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.728 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:29.728 -07 000000458 INF: FPGA: Recv ZPIEZORD 31576
17-03-17 17:22:29.738 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:29.738 -07 000000431 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.765 V. Piezo Error = -10.2 V.
17-03-17 17:22:29.738 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36215 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36213 (-172.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36211 (-172.1 uncal um), Max = 36220 (-172.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:29.738 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36215, posNoise = 5, negNoise = 4
17-03-17 17:22:29.738 -07 000000431 INF: Z Motor: After move to -0.172959, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:29.738 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:22:29.738 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:29.738 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:29.738 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:29.738 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:29.738 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:29.738 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:29.748 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:29.748 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:29.748 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:29.748 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:29.758 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:29.758 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:22:29.758 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:29.958 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:30.158 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:30.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:30.158 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:30.158 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:30.348 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:30.348 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:30.348 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:22:30.748 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:22:30.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:30.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:30.748 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:22:30.848 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:30.858 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:30.858 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:30.868 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:22:30.868 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:31.068 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:31.068 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:31.068 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 39094, sync = True, waitForSettling = True)
17-03-17 17:22:31.068 -07 000000431 INF: Z Motor: Moving to -0.178961 mm, started at -0.172976 mm, distance = -5.98 um
17-03-17 17:22:31.068 -07 000000431 INF: FPGA: Xmit ZDACW 39094\n [Z Motor]
17-03-17 17:22:31.068 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:22:31.078 -07 000000431 INF: FPGA: 'ZDACW 39094' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:31.078 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:31.078 -07 000000541 INF: FPGA: Recv ZDACR 39094
17-03-17 17:22:31.088 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.088 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:31.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.238 -07 000000541 INF: FPGA: Recv ZSGSRD 37152
17-03-17 17:22:31.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:31.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.248 -07 000000541 INF: FPGA: Recv ZSGSRD 37155
17-03-17 17:22:31.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.258 -07 000000541 INF: FPGA: Recv ZSGSRD 37147
17-03-17 17:22:31.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.268 -07 000000541 INF: FPGA: Recv ZSGSRD 37148
17-03-17 17:22:31.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.278 -07 000000541 INF: FPGA: Recv ZSGSRD 37155
17-03-17 17:22:31.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.288 -07 000000541 INF: FPGA: Recv ZSGSRD 37152
17-03-17 17:22:31.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.298 -07 000000541 INF: FPGA: Recv ZSGSRD 37149
17-03-17 17:22:31.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.308 -07 000000541 INF: FPGA: Recv ZSGSRD 37147
17-03-17 17:22:31.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.318 -07 000000541 INF: FPGA: Recv ZSGSRD 37144
17-03-17 17:22:31.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:31.328 -07 000000541 INF: FPGA: Recv ZSGSRD 37151
17-03-17 17:22:31.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.338 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:31.338 -07 000000541 INF: FPGA: Recv ZPIEZORD 32853
17-03-17 17:22:31.348 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:31.348 -07 000000431 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.965 V. Piezo Error = -9.5 V.
17-03-17 17:22:31.348 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37150 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37150 (-178.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37144 (-178.0 uncal um), Max = 37155 (-178.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:22:31.348 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37150, posNoise = 5, negNoise = 6
17-03-17 17:22:31.348 -07 000000431 INF: Z Motor: After move to -0.178961, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:31.348 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:31.348 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:31.348 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:31.348 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:31.348 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:31.358 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:31.358 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:31.358 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:31.358 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:31.358 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:31.358 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:31.378 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:31.378 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:22:31.378 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:31.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:31.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:31.578 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:31.778 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:31.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:31.778 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:31.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:22:31.918 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.033041,
17-03-17 17:22:31.968 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:31.968 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:31.968 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:22:32.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:22:32.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:32.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:32.358 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:22:32.578 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:32.648 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:32.648 -07 000000431 INF: Scanning Z-Position: -0.172461
17-03-17 17:22:32.648 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:32.648 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:32.658 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:32.658 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:32.858 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:32.858 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:32.858 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37674, sync = True, waitForSettling = True)
17-03-17 17:22:32.858 -07 000000431 INF: Z Motor: Moving to -0.172461 mm, started at -0.178983 mm, distance = 6.52 um
17-03-17 17:22:32.858 -07 000000431 INF: FPGA: Xmit ZDACW 37674\n [Z Motor]
17-03-17 17:22:32.858 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:22:32.868 -07 000000431 INF: FPGA: 'ZDACW 37674' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:32.868 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:32.868 -07 000000480 INF: FPGA: Recv ZDACR 37674
17-03-17 17:22:32.878 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:32.878 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:33.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.028 -07 000000569 INF: FPGA: Recv ZSGSRD 36141
17-03-17 17:22:33.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:33.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.038 -07 000000438 INF: FPGA: Recv ZSGSRD 36133
17-03-17 17:22:33.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.048 -07 000000632 INF: FPGA: Recv ZSGSRD 36139
17-03-17 17:22:33.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.058 -07 000000569 INF: FPGA: Recv ZSGSRD 36138
17-03-17 17:22:33.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.068 -07 000000632 INF: FPGA: Recv ZSGSRD 36138
17-03-17 17:22:33.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36138
17-03-17 17:22:33.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.088 -07 000000438 INF: FPGA: Recv ZSGSRD 36132
17-03-17 17:22:33.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.098 -07 000000569 INF: FPGA: Recv ZSGSRD 36135
17-03-17 17:22:33.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.108 -07 000000438 INF: FPGA: Recv ZSGSRD 36144
17-03-17 17:22:33.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:33.118 -07 000000480 INF: FPGA: Recv ZSGSRD 36132
17-03-17 17:22:33.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.128 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:33.128 -07 000000632 INF: FPGA: Recv ZPIEZORD 31495
17-03-17 17:22:33.138 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:33.138 -07 000000431 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -10.2 V.
17-03-17 17:22:33.138 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36137 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36138 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36132 (-171.6 uncal um), Max = 36144 (-171.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:33.138 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36137, posNoise = 7, negNoise = 5
17-03-17 17:22:33.138 -07 000000431 INF: Z Motor: After move to -0.172461, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:33.138 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:33.138 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:33.138 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:33.138 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:33.138 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:33.138 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:33.138 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:33.138 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:33.138 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:33.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:33.148 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:33.158 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:33.158 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:33.158 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:33.358 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:33.558 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:33.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:33.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:33.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:22:33.748 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:33.748 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:33.748 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 592 ms overall
17-03-17 17:22:34.148 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:22:34.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:34.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:34.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:22:34.348 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:34.358 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:35.398 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:35.398 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1030 ms to get response, and 1036 ms overall
17-03-17 17:22:35.398 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:35.598 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:35.598 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:35.598 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38985, sync = True, waitForSettling = True)
17-03-17 17:22:35.598 -07 000000431 INF: Z Motor: Moving to -0.178462 mm, started at -0.172475 mm, distance = -5.99 um
17-03-17 17:22:35.598 -07 000000431 INF: FPGA: Xmit ZDACW 38985\n [Z Motor]
17-03-17 17:22:35.608 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:22:35.608 -07 000000431 INF: FPGA: 'ZDACW 38985' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 17:22:35.608 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:35.608 -07 000000438 INF: FPGA: Recv ZDACR 38985
17-03-17 17:22:35.618 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:35.618 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:35.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.768 -07 000000632 INF: FPGA: Recv ZSGSRD 37076
17-03-17 17:22:35.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:35.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.778 -07 000000382 INF: FPGA: Recv ZSGSRD 37063
17-03-17 17:22:35.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.788 -07 000000438 INF: FPGA: Recv ZSGSRD 37070
17-03-17 17:22:35.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.798 -07 000000480 INF: FPGA: Recv ZSGSRD 37074
17-03-17 17:22:35.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.808 -07 000000458 INF: FPGA: Recv ZSGSRD 37075
17-03-17 17:22:35.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.818 -07 000000480 INF: FPGA: Recv ZSGSRD 37072
17-03-17 17:22:35.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.828 -07 000000458 INF: FPGA: Recv ZSGSRD 37064
17-03-17 17:22:35.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.838 -07 000000438 INF: FPGA: Recv ZSGSRD 37074
17-03-17 17:22:35.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.848 -07 000000632 INF: FPGA: Recv ZSGSRD 37071
17-03-17 17:22:35.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:35.858 -07 000000480 INF: FPGA: Recv ZSGSRD 37070
17-03-17 17:22:35.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.868 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:35.868 -07 000000438 INF: FPGA: Recv ZPIEZORD 32794
17-03-17 17:22:35.878 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:35.878 -07 000000431 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -9.4 V.
17-03-17 17:22:35.878 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37071 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37072 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37063 (-177.5 uncal um), Max = 37076 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:22:35.878 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37071, posNoise = 5, negNoise = 8
17-03-17 17:22:35.878 -07 000000431 INF: Z Motor: After move to -0.178462, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:35.878 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:22:35.878 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:35.878 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:35.878 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:35.878 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:35.878 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:35.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:35.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:35.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:35.888 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:35.888 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:35.898 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:35.898 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:22:35.898 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:36.098 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:36.298 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:36.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:36.298 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:36.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:36.488 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:36.488 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:36.488 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:36.488 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 589 ms to get response, and 593 ms overall
17-03-17 17:22:36.888 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:22:36.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:36.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:36.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:22:37.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:37.088 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:37.258 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:37.258 -07 000000431 INF: Scanning Z-Position: -0.171961
17-03-17 17:22:37.258 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:37.268 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:37.278 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:37.288 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.049392,
17-03-17 17:22:37.298 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:37.498 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:37.498 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:22:37.498 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37565, sync = True, waitForSettling = True)
17-03-17 17:22:37.498 -07 000000431 INF: Z Motor: Moving to -0.171962 mm, started at -0.178475 mm, distance = 6.51 um
17-03-17 17:22:37.498 -07 000000431 INF: FPGA: Xmit ZDACW 37565\n [Z Motor]
17-03-17 17:22:37.498 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:22:37.508 -07 000000431 INF: FPGA: 'ZDACW 37565' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:37.508 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:37.508 -07 000000424 INF: FPGA: Recv ZDACR 37565
17-03-17 17:22:37.518 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.518 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:37.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.668 -07 000000458 INF: FPGA: Recv ZSGSRD 36054
17-03-17 17:22:37.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:37.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.678 -07 000000424 INF: FPGA: Recv ZSGSRD 36062
17-03-17 17:22:37.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:37.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.688 -07 000000429 INF: FPGA: Recv ZSGSRD 36057
17-03-17 17:22:37.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.698 -07 000000480 INF: FPGA: Recv ZSGSRD 36053
17-03-17 17:22:37.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.708 -07 000000424 INF: FPGA: Recv ZSGSRD 36055
17-03-17 17:22:37.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.718 -07 000000480 INF: FPGA: Recv ZSGSRD 36059
17-03-17 17:22:37.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.728 -07 000000429 INF: FPGA: Recv ZSGSRD 36056
17-03-17 17:22:37.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.738 -07 000000480 INF: FPGA: Recv ZSGSRD 36057
17-03-17 17:22:37.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.748 -07 000000632 INF: FPGA: Recv ZSGSRD 36063
17-03-17 17:22:37.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:37.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36061
17-03-17 17:22:37.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.768 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:37.768 -07 000000438 INF: FPGA: Recv ZPIEZORD 31398
17-03-17 17:22:37.778 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:37.778 -07 000000431 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -10.2 V.
17-03-17 17:22:37.778 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36058 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36057 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36053 (-171.1 uncal um), Max = 36063 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:37.778 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36058, posNoise = 5, negNoise = 5
17-03-17 17:22:37.778 -07 000000431 INF: Z Motor: After move to -0.171962, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:37.778 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:22:37.778 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:37.778 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:37.778 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:37.778 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:37.788 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:37.788 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:37.788 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:37.788 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:37.788 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:37.788 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:37.798 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:37.798 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:22:37.808 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:37.998 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:38.198 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:38.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:38.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:38.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:22:38.388 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:38.398 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:38.398 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:22:38.788 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:22:38.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:38.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:38.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:22:38.898 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:38.908 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:38.908 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:38.918 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:22:38.918 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:39.118 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:39.118 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:39.118 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38876, sync = True, waitForSettling = True)
17-03-17 17:22:39.118 -07 000000431 INF: Z Motor: Moving to -0.177963 mm, started at -0.171968 mm, distance = -6.00 um
17-03-17 17:22:39.118 -07 000000431 INF: FPGA: Xmit ZDACW 38876\n [Z Motor]
17-03-17 17:22:39.118 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:22:39.128 -07 000000431 INF: FPGA: 'ZDACW 38876' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:39.128 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:39.128 -07 000000382 INF: FPGA: Recv ZDACR 38876
17-03-17 17:22:39.138 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.138 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:39.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36995
17-03-17 17:22:39.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:39.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.298 -07 000000632 INF: FPGA: Recv ZSGSRD 36999
17-03-17 17:22:39.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36988
17-03-17 17:22:39.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.318 -07 000000632 INF: FPGA: Recv ZSGSRD 36992
17-03-17 17:22:39.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.328 -07 000000433 INF: FPGA: Recv ZSGSRD 36998
17-03-17 17:22:39.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36991
17-03-17 17:22:39.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.348 -07 000000424 INF: FPGA: Recv ZSGSRD 36991
17-03-17 17:22:39.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.358 -07 000000480 INF: FPGA: Recv ZSGSRD 36994
17-03-17 17:22:39.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.368 -07 000000438 INF: FPGA: Recv ZSGSRD 36990
17-03-17 17:22:39.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:39.378 -07 000000458 INF: FPGA: Recv ZSGSRD 36998
17-03-17 17:22:39.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.388 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:39.388 -07 000000618 INF: FPGA: Recv ZPIEZORD 32687
17-03-17 17:22:39.398 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:39.398 -07 000000431 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -9.5 V.
17-03-17 17:22:39.398 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36994 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36993 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36988 (-177.0 uncal um), Max = 36999 (-177.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:22:39.398 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36994, posNoise = 5, negNoise = 6
17-03-17 17:22:39.398 -07 000000431 INF: Z Motor: After move to -0.177963, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:39.398 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:39.398 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:39.398 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:39.398 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:39.398 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:39.398 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:39.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:39.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:39.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:39.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:39.408 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:39.418 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:39.418 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:39.418 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:39.618 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:39.818 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:39.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:39.818 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:39.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:40.008 -07 000000429 INF: FPGA: Recv @CAMSNAP 586
17-03-17 17:22:40.008 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:40.008 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 591 ms overall
17-03-17 17:22:40.398 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:22:40.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:40.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:40.408 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:22:40.508 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:40.568 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:40.568 -07 000000431 INF: Scanning Z-Position: -0.171461
17-03-17 17:22:40.578 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:40.578 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:40.588 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:40.588 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:40.788 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:40.788 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:40.788 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37456, sync = True, waitForSettling = True)
17-03-17 17:22:40.788 -07 000000431 INF: Z Motor: Moving to -0.171463 mm, started at -0.177981 mm, distance = 6.52 um
17-03-17 17:22:40.788 -07 000000431 INF: FPGA: Xmit ZDACW 37456\n [Z Motor]
17-03-17 17:22:40.788 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:22:40.798 -07 000000431 INF: FPGA: 'ZDACW 37456' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:40.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:40.798 -07 000000438 INF: FPGA: Recv ZDACR 37456
17-03-17 17:22:40.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:40.808 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:40.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:40.958 -07 000000458 INF: FPGA: Recv ZSGSRD 35980
17-03-17 17:22:40.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:40.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:40.968 -07 000000433 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:22:40.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:40.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:40.978 -07 000000618 INF: FPGA: Recv ZSGSRD 35986
17-03-17 17:22:40.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:40.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:40.988 -07 000000433 INF: FPGA: Recv ZSGSRD 35981
17-03-17 17:22:40.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:40.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:40.998 -07 000000480 INF: FPGA: Recv ZSGSRD 35979
17-03-17 17:22:41.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:41.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:41.008 -07 000000424 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:22:41.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:41.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:41.018 -07 000000429 INF: FPGA: Recv ZSGSRD 35987
17-03-17 17:22:41.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:41.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:41.028 -07 000000433 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:22:41.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:41.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:41.038 -07 000000618 INF: FPGA: Recv ZSGSRD 35982
17-03-17 17:22:41.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:41.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:41.048 -07 000000433 INF: FPGA: Recv ZSGSRD 35980
17-03-17 17:22:41.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:41.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:41.058 -07 000000458 INF: FPGA: Recv ZPIEZORD 31317
17-03-17 17:22:41.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:41.068 -07 000000431 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.715 V. Piezo Error = -10.3 V.
17-03-17 17:22:41.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35983 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35983 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35979 (-170.6 uncal um), Max = 35987 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:41.068 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35983, posNoise = 4, negNoise = 4
17-03-17 17:22:41.068 -07 000000431 INF: Z Motor: After move to -0.171463, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:41.068 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:22:41.068 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:41.068 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:41.068 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:41.068 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:41.078 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:41.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:41.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:41.078 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:41.078 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:41.078 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:41.088 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:41.088 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:22:41.088 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:41.288 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:41.488 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:41.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:41.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:41.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:22:41.488 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:41.678 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:41.678 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:41.678 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:22:42.068 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:22:42.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:42.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:42.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 585 ms.
17-03-17 17:22:42.178 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:42.248 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:42.258 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:42.258 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:42.268 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:42.268 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:42.468 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:42.468 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:42.468 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38766, sync = True, waitForSettling = True)
17-03-17 17:22:42.468 -07 000000431 INF: Z Motor: Moving to -0.177459 mm, started at -0.171486 mm, distance = -5.97 um
17-03-17 17:22:42.468 -07 000000431 INF: FPGA: Xmit ZDACW 38766\n [Z Motor]
17-03-17 17:22:42.468 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:22:42.478 -07 000000431 INF: FPGA: 'ZDACW 38766' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:42.478 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:42.478 -07 000000433 INF: FPGA: Recv ZDACR 38766
17-03-17 17:22:42.488 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:42.488 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:42.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.638 -07 000000382 INF: FPGA: Recv ZSGSRD 36921
17-03-17 17:22:42.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:42.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.668 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.080668,
17-03-17 17:22:42.668 -07 000000382 INF: FPGA: Recv ZSGSRD 36916
17-03-17 17:22:42.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:22:42.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.698 -07 000000480 INF: FPGA: Recv ZSGSRD 36912
17-03-17 17:22:42.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:22:42.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.708 -07 000000382 INF: FPGA: Recv ZSGSRD 36907
17-03-17 17:22:42.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:42.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.728 -07 000000424 INF: FPGA: Recv ZSGSRD 36913
17-03-17 17:22:42.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:22:42.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.738 -07 000000433 INF: FPGA: Recv ZSGSRD 36912
17-03-17 17:22:42.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:42.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.758 -07 000000480 INF: FPGA: Recv ZSGSRD 36920
17-03-17 17:22:42.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:22:42.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.768 -07 000000618 INF: FPGA: Recv ZSGSRD 36910
17-03-17 17:22:42.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:42.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.778 -07 000000424 INF: FPGA: Recv ZSGSRD 36910
17-03-17 17:22:42.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:42.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:42.788 -07 000000433 INF: FPGA: Recv ZSGSRD 36916
17-03-17 17:22:42.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:42.798 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:42.798 -07 000000429 INF: FPGA: Recv ZPIEZORD 32580
17-03-17 17:22:42.808 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:42.808 -07 000000431 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -9.6 V.
17-03-17 17:22:42.808 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36914 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36912 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36907 (-176.5 uncal um), Max = 36921 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:22:42.808 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36914, posNoise = 7, negNoise = 7
17-03-17 17:22:42.808 -07 000000431 INF: Z Motor: After move to -0.177459, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:42.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 335 ms)
17-03-17 17:22:42.808 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:42.808 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:42.808 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:42.808 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:42.808 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:42.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:42.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:42.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:42.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:42.818 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:42.828 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:42.828 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:22:42.828 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:43.028 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:43.228 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:43.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:43.228 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:43.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:43.418 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:43.418 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:43.418 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:22:43.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:22:43.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:43.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:43.818 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:22:44.018 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:44.088 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:44.088 -07 000000431 INF: Scanning Z-Position: -0.170961
17-03-17 17:22:44.088 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:44.088 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:44.098 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:44.098 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:44.298 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:44.298 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:44.298 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37346, sync = True, waitForSettling = True)
17-03-17 17:22:44.298 -07 000000431 INF: Z Motor: Moving to -0.170959 mm, started at -0.177467 mm, distance = 6.51 um
17-03-17 17:22:44.298 -07 000000431 INF: FPGA: Xmit ZDACW 37346\n [Z Motor]
17-03-17 17:22:44.298 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:22:44.308 -07 000000431 INF: FPGA: 'ZDACW 37346' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:44.308 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:44.308 -07 000000433 INF: FPGA: Recv ZDACR 37346
17-03-17 17:22:44.318 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.318 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:44.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35908
17-03-17 17:22:44.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:44.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.478 -07 000000433 INF: FPGA: Recv ZSGSRD 35901
17-03-17 17:22:44.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.488 -07 000000618 INF: FPGA: Recv ZSGSRD 35903
17-03-17 17:22:44.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.498 -07 000000433 INF: FPGA: Recv ZSGSRD 35907
17-03-17 17:22:44.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.508 -07 000000424 INF: FPGA: Recv ZSGSRD 35897
17-03-17 17:22:44.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.518 -07 000000433 INF: FPGA: Recv ZSGSRD 35902
17-03-17 17:22:44.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.528 -07 000000618 INF: FPGA: Recv ZSGSRD 35904
17-03-17 17:22:44.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.538 -07 000000382 INF: FPGA: Recv ZSGSRD 35904
17-03-17 17:22:44.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35900
17-03-17 17:22:44.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:44.558 -07 000000433 INF: FPGA: Recv ZSGSRD 35898
17-03-17 17:22:44.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.568 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:44.568 -07 000000618 INF: FPGA: Recv ZPIEZORD 31222
17-03-17 17:22:44.578 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:44.578 -07 000000431 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -10.3 V.
17-03-17 17:22:44.578 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35902 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35902 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35897 (-170.1 uncal um), Max = 35908 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:44.578 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35902, posNoise = 6, negNoise = 5
17-03-17 17:22:44.578 -07 000000431 INF: Z Motor: After move to -0.170959, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:44.578 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:44.578 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:44.578 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:44.578 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:44.578 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:44.578 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:44.578 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:44.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:22:44.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:44.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:44.588 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:44.598 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:44.598 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:22:44.598 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:44.798 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:44.998 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:44.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:44.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:44.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:22:45.188 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:45.188 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:45.188 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:22:45.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:22:45.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:45.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:45.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:22:45.788 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:45.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:45.798 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:45.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:45.808 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:46.008 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:46.008 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 17:22:46.008 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38657, sync = True, waitForSettling = True)
17-03-17 17:22:46.008 -07 000000431 INF: Z Motor: Moving to -0.176960 mm, started at -0.170965 mm, distance = -5.99 um
17-03-17 17:22:46.008 -07 000000431 INF: FPGA: Xmit ZDACW 38657\n [Z Motor]
17-03-17 17:22:46.018 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:22:46.018 -07 000000431 INF: FPGA: 'ZDACW 38657' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:22:46.018 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:46.018 -07 000000382 INF: FPGA: Recv ZDACR 38657
17-03-17 17:22:46.028 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:22:46.028 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:46.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.178 -07 000000569 INF: FPGA: Recv ZSGSRD 36834
17-03-17 17:22:46.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:46.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.188 -07 000000480 INF: FPGA: Recv ZSGSRD 36841
17-03-17 17:22:46.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.198 -07 000000458 INF: FPGA: Recv ZSGSRD 36833
17-03-17 17:22:46.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.208 -07 000000382 INF: FPGA: Recv ZSGSRD 36832
17-03-17 17:22:46.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.218 -07 000000569 INF: FPGA: Recv ZSGSRD 36839
17-03-17 17:22:46.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.228 -07 000000480 INF: FPGA: Recv ZSGSRD 36838
17-03-17 17:22:46.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.238 -07 000000632 INF: FPGA: Recv ZSGSRD 36841
17-03-17 17:22:46.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.248 -07 000000382 INF: FPGA: Recv ZSGSRD 36833
17-03-17 17:22:46.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.258 -07 000000569 INF: FPGA: Recv ZSGSRD 36833
17-03-17 17:22:46.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:46.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36836
17-03-17 17:22:46.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.278 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:46.278 -07 000000632 INF: FPGA: Recv ZPIEZORD 32491
17-03-17 17:22:46.288 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:46.288 -07 000000431 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -9.6 V.
17-03-17 17:22:46.288 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36836 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36835 (-176.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36832 (-176.0 uncal um), Max = 36841 (-176.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:46.288 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36836, posNoise = 5, negNoise = 4
17-03-17 17:22:46.288 -07 000000431 INF: Z Motor: After move to -0.176960, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:46.288 -07 000000431 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 17:22:46.288 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:46.288 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:46.288 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:46.288 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:46.288 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:46.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:46.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:46.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:46.298 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:46.298 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:46.308 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:46.308 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:22:46.308 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:46.488 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:46.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:46.508 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:22:46.708 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:22:46.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:22:46.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:46.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:22:46.898 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:46.898 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:46.898 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:22:47.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:22:47.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:47.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:47.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:22:47.498 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:47.568 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:47.568 -07 000000431 INF: Scanning Z-Position: -0.170461
17-03-17 17:22:47.568 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:47.568 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:47.578 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:47.578 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:47.778 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:47.778 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:47.778 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37237, sync = True, waitForSettling = True)
17-03-17 17:22:47.778 -07 000000431 INF: Z Motor: Moving to -0.170460 mm, started at -0.176966 mm, distance = 6.51 um
17-03-17 17:22:47.778 -07 000000431 INF: FPGA: Xmit ZDACW 37237\n [Z Motor]
17-03-17 17:22:47.778 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:22:47.788 -07 000000431 INF: FPGA: 'ZDACW 37237' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:47.788 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:47.788 -07 000000480 INF: FPGA: Recv ZDACR 37237
17-03-17 17:22:47.798 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:47.798 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:47.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:47.948 -07 000000458 INF: FPGA: Recv ZSGSRD 35827
17-03-17 17:22:47.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:47.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:47.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35824
17-03-17 17:22:47.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:47.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:47.968 -07 000000632 INF: FPGA: Recv ZSGSRD 35825
17-03-17 17:22:47.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:47.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:47.978 -07 000000627 INF: FPGA: Recv ZSGSRD 35826
17-03-17 17:22:47.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:47.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:47.988 -07 000000458 INF: FPGA: Recv ZSGSRD 35820
17-03-17 17:22:47.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:47.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:47.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35825
17-03-17 17:22:48.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:48.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:48.008 -07 000000438 INF: FPGA: Recv ZSGSRD 35827
17-03-17 17:22:48.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:48.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:48.028 -07 000000480 INF: FPGA: Recv ZSGSRD 35824
17-03-17 17:22:48.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:22:48.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:48.038 -07 000000561 INF: FPGA: Recv ZSGSRD 35828
17-03-17 17:22:48.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:48.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:48.048 -07 000000438 INF: FPGA: Recv ZSGSRD 35824
17-03-17 17:22:48.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:48.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:48.058 -07 000000438 INF: FPGA: Recv ZPIEZORD 31164
17-03-17 17:22:48.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:48.068 -07 000000431 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -10.2 V.
17-03-17 17:22:48.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35825 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35825 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35820 (-169.6 uncal um), Max = 35828 (-169.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:48.068 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35825, posNoise = 3, negNoise = 5
17-03-17 17:22:48.068 -07 000000431 INF: Z Motor: After move to -0.170460, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:48.068 -07 000000431 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 17:22:48.068 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:48.068 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:48.068 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:48.068 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:48.078 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:48.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:48.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:48.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:48.078 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:22:48.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:48.078 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:48.088 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:48.088 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:22:48.108 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:48.308 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:48.508 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:48.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:48.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:48.508 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:22:48.698 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:48.698 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:48.698 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 605 ms overall
17-03-17 17:22:49.098 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:22:49.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:49.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:49.098 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:22:49.308 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:49.328 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:49.328 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:49.338 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.338 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:49.538 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:49.538 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:49.538 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38548, sync = True, waitForSettling = True)
17-03-17 17:22:49.538 -07 000000431 INF: Z Motor: Moving to -0.176461 mm, started at -0.170471 mm, distance = -5.99 um
17-03-17 17:22:49.538 -07 000000431 INF: FPGA: Xmit ZDACW 38548\n [Z Motor]
17-03-17 17:22:49.538 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:22:49.548 -07 000000431 INF: FPGA: 'ZDACW 38548' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:49.548 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:49.548 -07 000000480 INF: FPGA: Recv ZDACR 38548
17-03-17 17:22:49.558 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.558 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:49.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.708 -07 000000618 INF: FPGA: Recv ZSGSRD 36763
17-03-17 17:22:49.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:49.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36765
17-03-17 17:22:49.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.728 -07 000000480 INF: FPGA: Recv ZSGSRD 36762
17-03-17 17:22:49.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.738 -07 000000438 INF: FPGA: Recv ZSGSRD 36760
17-03-17 17:22:49.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.748 -07 000000480 INF: FPGA: Recv ZSGSRD 36761
17-03-17 17:22:49.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.758 -07 000000480 INF: FPGA: Recv ZSGSRD 36766
17-03-17 17:22:49.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.768 -07 000000382 INF: FPGA: Recv ZSGSRD 36757
17-03-17 17:22:49.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.778 -07 000000618 INF: FPGA: Recv ZSGSRD 36756
17-03-17 17:22:49.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.788 -07 000000438 INF: FPGA: Recv ZSGSRD 36764
17-03-17 17:22:49.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:49.798 -07 000000480 INF: FPGA: Recv ZSGSRD 36762
17-03-17 17:22:49.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.808 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:49.808 -07 000000438 INF: FPGA: Recv ZPIEZORD 32397
17-03-17 17:22:49.818 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:49.818 -07 000000431 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -9.6 V.
17-03-17 17:22:49.818 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36762 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36762 (-175.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36756 (-175.6 uncal um), Max = 36766 (-175.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:22:49.818 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36762, posNoise = 4, negNoise = 6
17-03-17 17:22:49.818 -07 000000431 INF: Z Motor: After move to -0.176461, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:49.818 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:49.818 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:49.818 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:49.818 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:49.818 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:49.818 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:49.818 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:49.828 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:49.828 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:49.828 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:49.828 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:49.838 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:49.838 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:22:49.838 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:50.038 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:50.238 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:50.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:50.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:50.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:50.428 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:50.428 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:50.428 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:22:50.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:22:50.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:50.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:50.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:22:51.028 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:51.098 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:51.098 -07 000000431 INF: Scanning Z-Position: -0.169961
17-03-17 17:22:51.098 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:51.098 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:51.108 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:51.108 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:51.308 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:51.308 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 17:22:51.308 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37128, sync = True, waitForSettling = True)
17-03-17 17:22:51.308 -07 000000431 INF: Z Motor: Moving to -0.169961 mm, started at -0.176490 mm, distance = 6.53 um
17-03-17 17:22:51.308 -07 000000431 INF: FPGA: Xmit ZDACW 37128\n [Z Motor]
17-03-17 17:22:51.308 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:22:51.318 -07 000000431 INF: FPGA: 'ZDACW 37128' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:51.318 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:51.318 -07 000000458 INF: FPGA: Recv ZDACR 37128
17-03-17 17:22:51.328 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.328 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:51.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:22:51.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:51.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35748
17-03-17 17:22:51.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:51.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:51.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.498 -07 000000458 INF: FPGA: Recv ZSGSRD 35746
17-03-17 17:22:51.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.508 -07 000000438 INF: FPGA: Recv ZSGSRD 35745
17-03-17 17:22:51.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35744
17-03-17 17:22:51.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.528 -07 000000424 INF: FPGA: Recv ZSGSRD 35757
17-03-17 17:22:51.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.538 -07 000000502 INF: FPGA: Recv ZSGSRD 35746
17-03-17 17:22:51.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.548 -07 000000458 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:22:51.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.558 -07 000000429 INF: FPGA: Recv ZSGSRD 35747
17-03-17 17:22:51.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:51.568 -07 000000627 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:22:51.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.578 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:51.578 -07 000000438 INF: FPGA: Recv ZPIEZORD 31065
17-03-17 17:22:51.588 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:51.588 -07 000000431 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.665 V. Piezo Error = -10.3 V.
17-03-17 17:22:51.588 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35749 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35744 (-169.1 uncal um), Max = 35757 (-169.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:22:51.588 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35749, posNoise = 8, negNoise = 5
17-03-17 17:22:51.588 -07 000000431 INF: Z Motor: After move to -0.169961, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:51.588 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:22:51.588 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:51.588 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:51.588 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:51.588 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:51.588 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:51.588 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:51.588 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:51.598 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:51.598 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:51.598 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:51.608 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:22:51.608 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:22:51.608 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:51.808 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:52.008 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:52.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:52.008 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:52.008 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:52.198 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:52.198 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:52.198 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:22:52.598 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:22:52.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:52.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:52.608 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:22:52.798 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:52.818 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:53.538 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:53.538 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 710 ms to get response, and 720 ms overall
17-03-17 17:22:53.538 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:53.738 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:53.738 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:22:53.738 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38439, sync = True, waitForSettling = True)
17-03-17 17:22:53.738 -07 000000431 INF: Z Motor: Moving to -0.175962 mm, started at -0.169983 mm, distance = -5.98 um
17-03-17 17:22:53.738 -07 000000431 INF: FPGA: Xmit ZDACW 38439\n [Z Motor]
17-03-17 17:22:53.738 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:22:53.748 -07 000000431 INF: FPGA: 'ZDACW 38439' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:22:53.748 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:53.748 -07 000000480 INF: FPGA: Recv ZDACR 38439
17-03-17 17:22:53.758 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.758 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:53.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.908 -07 000000429 INF: FPGA: Recv ZSGSRD 36684
17-03-17 17:22:53.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:53.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.918 -07 000000632 INF: FPGA: Recv ZSGSRD 36686
17-03-17 17:22:53.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.928 -07 000000424 INF: FPGA: Recv ZSGSRD 36680
17-03-17 17:22:53.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.938 -07 000000632 INF: FPGA: Recv ZSGSRD 36682
17-03-17 17:22:53.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.948 -07 000000382 INF: FPGA: Recv ZSGSRD 36687
17-03-17 17:22:53.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.958 -07 000000438 INF: FPGA: Recv ZSGSRD 36684
17-03-17 17:22:53.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.968 -07 000000458 INF: FPGA: Recv ZSGSRD 36682
17-03-17 17:22:53.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36687
17-03-17 17:22:53.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.988 -07 000000618 INF: FPGA: Recv ZSGSRD 36686
17-03-17 17:22:53.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:53.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:53.998 -07 000000382 INF: FPGA: Recv ZSGSRD 36682
17-03-17 17:22:54.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:54.008 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:54.008 -07 000000438 INF: FPGA: Recv ZPIEZORD 32314
17-03-17 17:22:54.018 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:54.018 -07 000000431 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -9.6 V.
17-03-17 17:22:54.018 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36684 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36684 (-175.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36680 (-175.1 uncal um), Max = 36687 (-175.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:54.018 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36684, posNoise = 3, negNoise = 4
17-03-17 17:22:54.018 -07 000000431 INF: Z Motor: After move to -0.175962, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:54.018 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:54.018 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:54.018 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:54.018 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:54.018 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:54.018 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:54.018 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:54.018 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:54.018 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:54.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:22:54.028 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:54.038 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:22:54.038 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-17 17:22:54.038 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:54.158 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.053471,
17-03-17 17:22:54.238 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:54.438 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:54.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:54.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:54.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:22:54.628 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:54.628 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:54.628 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:22:55.018 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 578 ms.
17-03-17 17:22:55.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:55.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:55.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:22:55.128 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:55.198 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:55.198 -07 000000431 INF: Scanning Z-Position: -0.169461
17-03-17 17:22:55.198 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:55.198 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:55.208 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:22:55.208 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:55.408 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:55.408 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:55.408 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37019, sync = True, waitForSettling = True)
17-03-17 17:22:55.408 -07 000000431 INF: Z Motor: Moving to -0.169462 mm, started at -0.175989 mm, distance = 6.53 um
17-03-17 17:22:55.408 -07 000000431 INF: FPGA: Xmit ZDACW 37019\n [Z Motor]
17-03-17 17:22:55.408 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:22:55.418 -07 000000431 INF: FPGA: 'ZDACW 37019' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:55.418 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:55.418 -07 000000382 INF: FPGA: Recv ZDACR 37019
17-03-17 17:22:55.428 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.428 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:55.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.578 -07 000000627 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:22:55.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:55.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.588 -07 000000480 INF: FPGA: Recv ZSGSRD 35670
17-03-17 17:22:55.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.598 -07 000000458 INF: FPGA: Recv ZSGSRD 35666
17-03-17 17:22:55.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35672
17-03-17 17:22:55.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.618 -07 000000627 INF: FPGA: Recv ZSGSRD 35669
17-03-17 17:22:55.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.628 -07 000000632 INF: FPGA: Recv ZSGSRD 35664
17-03-17 17:22:55.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.638 -07 000000424 INF: FPGA: Recv ZSGSRD 35671
17-03-17 17:22:55.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35670
17-03-17 17:22:55.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.658 -07 000000458 INF: FPGA: Recv ZSGSRD 35671
17-03-17 17:22:55.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:55.668 -07 000000632 INF: FPGA: Recv ZSGSRD 35662
17-03-17 17:22:55.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.678 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:55.678 -07 000000382 INF: FPGA: Recv ZPIEZORD 30978
17-03-17 17:22:55.688 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:55.688 -07 000000431 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -10.3 V.
17-03-17 17:22:55.688 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35668 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35670 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35662 (-168.6 uncal um), Max = 35672 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:22:55.688 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35668, posNoise = 4, negNoise = 6
17-03-17 17:22:55.688 -07 000000431 INF: Z Motor: After move to -0.169462, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:55.688 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:22:55.688 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:55.688 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:55.688 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:55.688 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:55.688 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:55.688 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:55.698 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:22:55.698 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:55.698 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:55.698 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:55.708 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:22:55.708 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:22:55.718 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:55.918 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:22:56.118 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:22:56.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:22:56.118 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:56.118 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:56.298 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:56.298 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:56.298 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:22:56.488 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:22:56.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:22:56.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:56.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:22:56.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:22:56.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:22:56.908 -07 000000431 INF: ComputeBrenner start
17-03-17 17:22:56.918 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:56.918 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:56.928 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:22:56.928 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:22:57.128 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:22:57.128 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:57.128 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38329, sync = True, waitForSettling = True)
17-03-17 17:22:57.128 -07 000000431 INF: Z Motor: Moving to -0.175459 mm, started at -0.169462 mm, distance = -6.00 um
17-03-17 17:22:57.128 -07 000000431 INF: FPGA: Xmit ZDACW 38329\n [Z Motor]
17-03-17 17:22:57.138 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:22:57.138 -07 000000431 INF: FPGA: 'ZDACW 38329' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:22:57.138 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:57.138 -07 000000458 INF: FPGA: Recv ZDACR 38329
17-03-17 17:22:57.148 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.148 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:57.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.298 -07 000000627 INF: FPGA: Recv ZSGSRD 36604
17-03-17 17:22:57.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:22:57.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.308 -07 000000458 INF: FPGA: Recv ZSGSRD 36606
17-03-17 17:22:57.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36603
17-03-17 17:22:57.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36600
17-03-17 17:22:57.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.338 -07 000000632 INF: FPGA: Recv ZSGSRD 36606
17-03-17 17:22:57.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.348 -07 000000480 INF: FPGA: Recv ZSGSRD 36607
17-03-17 17:22:57.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.358 -07 000000438 INF: FPGA: Recv ZSGSRD 36605
17-03-17 17:22:57.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.368 -07 000000382 INF: FPGA: Recv ZSGSRD 36605
17-03-17 17:22:57.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.378 -07 000000438 INF: FPGA: Recv ZSGSRD 36603
17-03-17 17:22:57.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:57.388 -07 000000480 INF: FPGA: Recv ZSGSRD 36604
17-03-17 17:22:57.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.398 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:57.398 -07 000000429 INF: FPGA: Recv ZPIEZORD 32239
17-03-17 17:22:57.408 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:57.408 -07 000000431 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -9.6 V.
17-03-17 17:22:57.408 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36604 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36604 (-174.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36600 (-174.6 uncal um), Max = 36607 (-174.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:22:57.408 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36604, posNoise = 3, negNoise = 4
17-03-17 17:22:57.408 -07 000000431 INF: Z Motor: After move to -0.175459, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:57.408 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:22:57.408 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:57.408 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:57.408 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:57.408 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:57.408 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:57.408 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:57.418 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:22:57.418 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:57.418 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:57.418 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:57.428 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:22:57.428 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:22:57.428 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:57.628 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:57.828 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:57.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:57.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:57.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:22:58.018 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:22:58.018 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:58.018 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:22:58.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:22:58.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:22:58.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 17:22:58.528 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 701 ms.
17-03-17 17:22:58.628 -07 000000431 INF: MeasureProfile start
17-03-17 17:22:58.698 -07 000000431 INF: MeasureProfile done
17-03-17 17:22:58.698 -07 000000431 INF: Scanning Z-Position: -0.168961
17-03-17 17:22:58.698 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:22:58.698 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:22:58.708 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:22:58.708 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:22:58.908 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:22:58.908 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:22:58.908 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36910, sync = True, waitForSettling = True)
17-03-17 17:22:58.908 -07 000000431 INF: Z Motor: Moving to -0.168963 mm, started at -0.175475 mm, distance = 6.51 um
17-03-17 17:22:58.908 -07 000000431 INF: FPGA: Xmit ZDACW 36910\n [Z Motor]
17-03-17 17:22:58.908 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:22:58.918 -07 000000431 INF: FPGA: 'ZDACW 36910' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:22:58.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:22:58.918 -07 000000382 INF: FPGA: Recv ZDACR 36910
17-03-17 17:22:58.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:58.928 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:22:59.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.078 -07 000000438 INF: FPGA: Recv ZSGSRD 35595
17-03-17 17:22:59.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.088 -07 000000458 INF: FPGA: Recv ZSGSRD 35595
17-03-17 17:22:59.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.098 -07 000000429 INF: FPGA: Recv ZSGSRD 35589
17-03-17 17:22:59.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.108 -07 000000433 INF: FPGA: Recv ZSGSRD 35589
17-03-17 17:22:59.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35591
17-03-17 17:22:59.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35592
17-03-17 17:22:59.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35593
17-03-17 17:22:59.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.148 -07 000000458 INF: FPGA: Recv ZSGSRD 35592
17-03-17 17:22:59.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.158 -07 000000438 INF: FPGA: Recv ZSGSRD 35596
17-03-17 17:22:59.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:22:59.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35592
17-03-17 17:22:59.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.178 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:22:59.178 -07 000000480 INF: FPGA: Recv ZPIEZORD 30870
17-03-17 17:22:59.188 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:22:59.188 -07 000000431 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -10.4 V.
17-03-17 17:22:59.188 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35592 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35592 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35589 (-168.1 uncal um), Max = 35596 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:22:59.188 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35592, posNoise = 4, negNoise = 3
17-03-17 17:22:59.188 -07 000000431 INF: Z Motor: After move to -0.168963, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:22:59.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:22:59.188 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:22:59.188 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:22:59.188 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:22:59.188 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:22:59.188 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:22:59.188 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:22:59.188 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:22:59.188 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:22:59.198 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:22:59.198 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:22:59.198 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-17 17:22:59.198 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms.
17-03-17 17:22:59.228 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:22:59.418 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:22:59.538 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.064349,
17-03-17 17:22:59.618 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:22:59.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:22:59.618 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:22:59.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:22:59.818 -07 000000424 INF: FPGA: Recv @CAMSNAP 586
17-03-17 17:22:59.818 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:22:59.818 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 608 ms overall
17-03-17 17:23:00.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:23:00.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:00.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:00.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:23:00.318 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:00.328 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:00.328 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:00.338 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:00.338 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:00.538 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:00.538 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:00.538 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38220, sync = True, waitForSettling = True)
17-03-17 17:23:00.538 -07 000000431 INF: Z Motor: Moving to -0.174960 mm, started at -0.168974 mm, distance = -5.99 um
17-03-17 17:23:00.538 -07 000000431 INF: FPGA: Xmit ZDACW 38220\n [Z Motor]
17-03-17 17:23:00.538 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:23:00.548 -07 000000431 INF: FPGA: 'ZDACW 38220' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:00.548 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:00.548 -07 000000424 INF: FPGA: Recv ZDACR 38220
17-03-17 17:23:00.558 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.558 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:00.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.708 -07 000000382 INF: FPGA: Recv ZSGSRD 36524
17-03-17 17:23:00.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:00.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.718 -07 000000433 INF: FPGA: Recv ZSGSRD 36525
17-03-17 17:23:00.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.728 -07 000000382 INF: FPGA: Recv ZSGSRD 36526
17-03-17 17:23:00.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36526
17-03-17 17:23:00.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.748 -07 000000632 INF: FPGA: Recv ZSGSRD 36529
17-03-17 17:23:00.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.758 -07 000000632 INF: FPGA: Recv ZSGSRD 36523
17-03-17 17:23:00.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.768 -07 000000627 INF: FPGA: Recv ZSGSRD 36528
17-03-17 17:23:00.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.778 -07 000000382 INF: FPGA: Recv ZSGSRD 36525
17-03-17 17:23:00.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.788 -07 000000382 INF: FPGA: Recv ZSGSRD 36528
17-03-17 17:23:00.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:00.798 -07 000000627 INF: FPGA: Recv ZSGSRD 36525
17-03-17 17:23:00.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.808 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:00.808 -07 000000433 INF: FPGA: Recv ZPIEZORD 32131
17-03-17 17:23:00.818 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:00.818 -07 000000431 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -9.7 V.
17-03-17 17:23:00.818 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36526 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36526 (-174.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36523 (-174.1 uncal um), Max = 36529 (-174.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:23:00.818 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36526, posNoise = 3, negNoise = 3
17-03-17 17:23:00.818 -07 000000431 INF: Z Motor: After move to -0.174960, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:00.818 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:23:00.818 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:00.818 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:00.818 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:00.818 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:00.818 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:00.818 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:00.828 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:00.828 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:00.828 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:00.828 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:00.838 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:00.838 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:23:00.838 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:01.038 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:01.238 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:01.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:01.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:01.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:01.428 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:01.428 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:01.428 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:23:01.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:01.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:23:01.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:01.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:01.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:23:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:01.928 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:01.988 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:01.988 -07 000000431 INF: Scanning Z-Position: -0.168461
17-03-17 17:23:01.998 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:01.998 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:02.008 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:02.008 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:02.208 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:02.208 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:02.208 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36800, sync = True, waitForSettling = True)
17-03-17 17:23:02.208 -07 000000431 INF: Z Motor: Moving to -0.168460 mm, started at -0.174974 mm, distance = 6.51 um
17-03-17 17:23:02.208 -07 000000431 INF: FPGA: Xmit ZDACW 36800\n [Z Motor]
17-03-17 17:23:02.218 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:23:02.218 -07 000000431 INF: FPGA: 'ZDACW 36800' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:02.218 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:02.218 -07 000000627 INF: FPGA: Recv ZDACR 36800
17-03-17 17:23:02.228 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.228 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:02.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.378 -07 000000632 INF: FPGA: Recv ZSGSRD 35512
17-03-17 17:23:02.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:02.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.388 -07 000000632 INF: FPGA: Recv ZSGSRD 35516
17-03-17 17:23:02.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.398 -07 000000632 INF: FPGA: Recv ZSGSRD 35513
17-03-17 17:23:02.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.408 -07 000000632 INF: FPGA: Recv ZSGSRD 35518
17-03-17 17:23:02.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.418 -07 000000627 INF: FPGA: Recv ZSGSRD 35510
17-03-17 17:23:02.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.428 -07 000000632 INF: FPGA: Recv ZSGSRD 35517
17-03-17 17:23:02.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.438 -07 000000433 INF: FPGA: Recv ZSGSRD 35517
17-03-17 17:23:02.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.448 -07 000000627 INF: FPGA: Recv ZSGSRD 35511
17-03-17 17:23:02.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35512
17-03-17 17:23:02.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:02.468 -07 000000627 INF: FPGA: Recv ZSGSRD 35514
17-03-17 17:23:02.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.478 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:02.478 -07 000000433 INF: FPGA: Recv ZPIEZORD 30810
17-03-17 17:23:02.488 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:02.488 -07 000000431 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.615 V. Piezo Error = -10.3 V.
17-03-17 17:23:02.488 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35514 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35514 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35510 (-167.6 uncal um), Max = 35518 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:02.488 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35514, posNoise = 4, negNoise = 4
17-03-17 17:23:02.488 -07 000000431 INF: Z Motor: After move to -0.168460, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:02.488 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:02.488 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:02.488 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:02.488 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:02.488 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:02.488 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:02.488 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:02.498 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:23:02.498 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:02.498 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:02.498 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:02.508 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:02.508 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:23:02.508 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:02.708 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:02.908 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:02.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:02.908 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:02.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:23:03.098 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:03.098 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:03.098 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 577 ms to get response, and 589 ms overall
17-03-17 17:23:03.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:23:03.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:03.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:03.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:23:03.698 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:03.708 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:03.708 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:03.718 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:03.718 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:03.918 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:03.918 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:03.918 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38111, sync = True, waitForSettling = True)
17-03-17 17:23:03.918 -07 000000431 INF: Z Motor: Moving to -0.174461 mm, started at -0.168473 mm, distance = -5.99 um
17-03-17 17:23:03.918 -07 000000431 INF: FPGA: Xmit ZDACW 38111\n [Z Motor]
17-03-17 17:23:03.918 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:23:03.928 -07 000000431 INF: FPGA: 'ZDACW 38111' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:03.928 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:03.928 -07 000000502 INF: FPGA: Recv ZDACR 38111
17-03-17 17:23:03.938 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:03.938 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:04.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.088 -07 000000618 INF: FPGA: Recv ZSGSRD 36452
17-03-17 17:23:04.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:04.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.098 -07 000000502 INF: FPGA: Recv ZSGSRD 36448
17-03-17 17:23:04.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.108 -07 000000632 INF: FPGA: Recv ZSGSRD 36445
17-03-17 17:23:04.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.118 -07 000000433 INF: FPGA: Recv ZSGSRD 36446
17-03-17 17:23:04.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.128 -07 000000502 INF: FPGA: Recv ZSGSRD 36453
17-03-17 17:23:04.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.138 -07 000000627 INF: FPGA: Recv ZSGSRD 36451
17-03-17 17:23:04.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.148 -07 000000502 INF: FPGA: Recv ZSGSRD 36446
17-03-17 17:23:04.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.158 -07 000000433 INF: FPGA: Recv ZSGSRD 36450
17-03-17 17:23:04.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.168 -07 000000632 INF: FPGA: Recv ZSGSRD 36448
17-03-17 17:23:04.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:04.178 -07 000000433 INF: FPGA: Recv ZSGSRD 36449
17-03-17 17:23:04.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.188 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:04.188 -07 000000632 INF: FPGA: Recv ZPIEZORD 32071
17-03-17 17:23:04.198 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:04.198 -07 000000431 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.815 V. Piezo Error = -9.6 V.
17-03-17 17:23:04.198 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36449 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36448 (-173.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36445 (-173.6 uncal um), Max = 36453 (-173.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:04.198 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36449, posNoise = 4, negNoise = 4
17-03-17 17:23:04.198 -07 000000431 INF: Z Motor: After move to -0.174461, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:04.198 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:04.198 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:04.198 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:04.198 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:04.198 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:04.198 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:04.198 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:04.198 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:23:04.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:04.208 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:04.208 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:04.218 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:04.218 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:04.218 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:04.418 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:04.618 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:04.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:04.618 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:04.618 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:23:04.808 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:04.808 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:04.808 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:23:04.918 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.038479,
17-03-17 17:23:05.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:23:05.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:05.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:05.208 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:23:05.508 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:05.578 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:05.578 -07 000000431 INF: Scanning Z-Position: -0.167961
17-03-17 17:23:05.578 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:05.578 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:05.588 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:05.588 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:05.788 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:05.788 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:05.788 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36691, sync = True, waitForSettling = True)
17-03-17 17:23:05.788 -07 000000431 INF: Z Motor: Moving to -0.167961 mm, started at -0.174479 mm, distance = 6.52 um
17-03-17 17:23:05.788 -07 000000431 INF: FPGA: Xmit ZDACW 36691\n [Z Motor]
17-03-17 17:23:05.788 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:23:05.798 -07 000000431 INF: FPGA: 'ZDACW 36691' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:05.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:05.798 -07 000000433 INF: FPGA: Recv ZDACR 36691
17-03-17 17:23:05.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:05.808 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:05.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:05.958 -07 000000433 INF: FPGA: Recv ZSGSRD 35440
17-03-17 17:23:05.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:05.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:05.968 -07 000000433 INF: FPGA: Recv ZSGSRD 35437
17-03-17 17:23:05.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:05.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:05.978 -07 000000433 INF: FPGA: Recv ZSGSRD 35444
17-03-17 17:23:05.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:05.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:05.988 -07 000000433 INF: FPGA: Recv ZSGSRD 35435
17-03-17 17:23:05.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:05.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:05.998 -07 000000433 INF: FPGA: Recv ZSGSRD 35432
17-03-17 17:23:06.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:06.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:06.008 -07 000000433 INF: FPGA: Recv ZSGSRD 35436
17-03-17 17:23:06.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:06.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:06.018 -07 000000433 INF: FPGA: Recv ZSGSRD 35432
17-03-17 17:23:06.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:06.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:06.028 -07 000000433 INF: FPGA: Recv ZSGSRD 35439
17-03-17 17:23:06.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:06.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:06.038 -07 000000433 INF: FPGA: Recv ZSGSRD 35434
17-03-17 17:23:06.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:06.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:06.048 -07 000000433 INF: FPGA: Recv ZSGSRD 35440
17-03-17 17:23:06.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:06.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:06.058 -07 000000433 INF: FPGA: Recv ZPIEZORD 30693
17-03-17 17:23:06.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:06.068 -07 000000431 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -10.4 V.
17-03-17 17:23:06.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35437 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35436 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35432 (-167.1 uncal um), Max = 35444 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:06.068 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35437, posNoise = 7, negNoise = 5
17-03-17 17:23:06.068 -07 000000431 INF: Z Motor: After move to -0.167961, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:06.068 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:06.068 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:06.068 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:06.068 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:06.068 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:06.078 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:06.078 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:06.078 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:06.078 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:06.078 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:06.078 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:06.098 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:06.098 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:23:06.098 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:06.298 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:06.488 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:06.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:06.498 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:06.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:06.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:06.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) start.
17-03-17 17:23:06.688 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:06.688 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:06.688 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall
17-03-17 17:23:07.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:23:07.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:07.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:07.088 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:23:07.308 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:07.318 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:07.318 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:07.328 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:23:07.328 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:07.528 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:07.528 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:07.528 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38002, sync = True, waitForSettling = True)
17-03-17 17:23:07.528 -07 000000431 INF: Z Motor: Moving to -0.173962 mm, started at -0.167978 mm, distance = -5.98 um
17-03-17 17:23:07.528 -07 000000431 INF: FPGA: Xmit ZDACW 38002\n [Z Motor]
17-03-17 17:23:07.528 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:23:07.538 -07 000000431 INF: FPGA: 'ZDACW 38002' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:07.538 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:07.538 -07 000000382 INF: FPGA: Recv ZDACR 38002
17-03-17 17:23:07.548 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.548 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:07.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.698 -07 000000480 INF: FPGA: Recv ZSGSRD 36367
17-03-17 17:23:07.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:07.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.708 -07 000000433 INF: FPGA: Recv ZSGSRD 36374
17-03-17 17:23:07.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36369
17-03-17 17:23:07.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.728 -07 000000433 INF: FPGA: Recv ZSGSRD 36379
17-03-17 17:23:07.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.738 -07 000000480 INF: FPGA: Recv ZSGSRD 36361
17-03-17 17:23:07.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.748 -07 000000429 INF: FPGA: Recv ZSGSRD 36371
17-03-17 17:23:07.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.758 -07 000000480 INF: FPGA: Recv ZSGSRD 36378
17-03-17 17:23:07.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.768 -07 000000382 INF: FPGA: Recv ZSGSRD 36365
17-03-17 17:23:07.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.778 -07 000000433 INF: FPGA: Recv ZSGSRD 36373
17-03-17 17:23:07.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:07.788 -07 000000433 INF: FPGA: Recv ZSGSRD 36365
17-03-17 17:23:07.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.798 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:07.798 -07 000000382 INF: FPGA: Recv ZPIEZORD 31982
17-03-17 17:23:07.808 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:07.808 -07 000000431 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -9.7 V.
17-03-17 17:23:07.808 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36370 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36370 (-173.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36361 (-173.0 uncal um), Max = 36379 (-173.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:23:07.808 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36370, posNoise = 9, negNoise = 9
17-03-17 17:23:07.808 -07 000000431 INF: Z Motor: After move to -0.173962, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:07.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:07.808 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:07.808 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:07.808 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:07.808 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:07.808 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:07.808 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:07.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:23:07.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:07.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:07.818 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:07.828 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:07.828 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:23:07.828 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:08.028 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:08.228 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:08.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:08.228 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:08.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:08.418 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:08.418 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:08.418 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:23:08.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:23:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:08.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:08.818 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:23:08.918 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:08.988 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:08.988 -07 000000431 INF: Scanning Z-Position: -0.167461
17-03-17 17:23:08.988 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:08.988 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:08.998 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:08.998 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:09.198 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:09.198 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 17:23:09.198 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36582, sync = True, waitForSettling = True)
17-03-17 17:23:09.198 -07 000000431 INF: Z Motor: Moving to -0.167462 mm, started at -0.173972 mm, distance = 6.51 um
17-03-17 17:23:09.198 -07 000000431 INF: FPGA: Xmit ZDACW 36582\n [Z Motor]
17-03-17 17:23:09.198 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:23:09.208 -07 000000431 INF: FPGA: 'ZDACW 36582' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:23:09.208 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:09.208 -07 000000429 INF: FPGA: Recv ZDACR 36582
17-03-17 17:23:09.218 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.218 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:09.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35359
17-03-17 17:23:09.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:09.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.378 -07 000000502 INF: FPGA: Recv ZSGSRD 35358
17-03-17 17:23:09.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.388 -07 000000569 INF: FPGA: Recv ZSGSRD 35363
17-03-17 17:23:09.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.398 -07 000000433 INF: FPGA: Recv ZSGSRD 35357
17-03-17 17:23:09.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35356
17-03-17 17:23:09.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.418 -07 000000429 INF: FPGA: Recv ZSGSRD 35360
17-03-17 17:23:09.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.428 -07 000000569 INF: FPGA: Recv ZSGSRD 35354
17-03-17 17:23:09.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.438 -07 000000458 INF: FPGA: Recv ZSGSRD 35358
17-03-17 17:23:09.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.448 -07 000000480 INF: FPGA: Recv ZSGSRD 35354
17-03-17 17:23:09.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:09.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35356
17-03-17 17:23:09.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.468 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:09.468 -07 000000480 INF: FPGA: Recv ZPIEZORD 30604
17-03-17 17:23:09.478 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:09.478 -07 000000431 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.582 V. Piezo Error = -10.4 V.
17-03-17 17:23:09.478 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35358 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35358 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35354 (-166.6 uncal um), Max = 35363 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:09.478 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35358, posNoise = 5, negNoise = 4
17-03-17 17:23:09.478 -07 000000431 INF: Z Motor: After move to -0.167462, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:09.478 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:23:09.478 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:09.478 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:09.478 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:09.478 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:09.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:09.478 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:09.488 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:09.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:09.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:09.488 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:09.498 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:09.498 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:09.498 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:09.698 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:10.758 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:10.758 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:10.758 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:10.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:10.758 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 1251 ms to get response, and 1253 ms overall
17-03-17 17:23:10.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:10.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:11.068 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.028963,
17-03-17 17:23:11.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:23:11.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:11.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:11.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:23:11.488 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:11.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:11.668 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:11.678 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:11.678 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:11.688 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:11.688 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:11.888 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:11.888 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:11.888 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37893, sync = True, waitForSettling = True)
17-03-17 17:23:11.888 -07 000000431 INF: Z Motor: Moving to -0.173463 mm, started at -0.167471 mm, distance = -5.99 um
17-03-17 17:23:11.888 -07 000000431 INF: FPGA: Xmit ZDACW 37893\n [Z Motor]
17-03-17 17:23:11.888 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:23:11.898 -07 000000431 INF: FPGA: 'ZDACW 37893' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:11.898 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:11.898 -07 000000632 INF: FPGA: Recv ZDACR 37893
17-03-17 17:23:11.908 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:11.908 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:12.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.058 -07 000000569 INF: FPGA: Recv ZSGSRD 36293
17-03-17 17:23:12.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:12.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36293
17-03-17 17:23:12.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36292
17-03-17 17:23:12.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.088 -07 000000632 INF: FPGA: Recv ZSGSRD 36297
17-03-17 17:23:12.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.098 -07 000000480 INF: FPGA: Recv ZSGSRD 36294
17-03-17 17:23:12.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.108 -07 000000541 INF: FPGA: Recv ZSGSRD 36288
17-03-17 17:23:12.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.118 -07 000000458 INF: FPGA: Recv ZSGSRD 36293
17-03-17 17:23:12.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.128 -07 000000632 INF: FPGA: Recv ZSGSRD 36292
17-03-17 17:23:12.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36294
17-03-17 17:23:12.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:12.148 -07 000000569 INF: FPGA: Recv ZSGSRD 36293
17-03-17 17:23:12.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:12.158 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:12.158 -07 000000541 INF: FPGA: Recv ZPIEZORD 31910
17-03-17 17:23:12.168 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:12.168 -07 000000431 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.782 V. Piezo Error = -9.7 V.
17-03-17 17:23:12.168 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36293 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36293 (-172.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36288 (-172.6 uncal um), Max = 36297 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:12.168 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36293, posNoise = 4, negNoise = 5
17-03-17 17:23:12.168 -07 000000431 INF: Z Motor: After move to -0.173463, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:12.168 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:12.168 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:12.168 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:12.168 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:12.168 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:12.168 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:12.168 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:12.168 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:12.168 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:12.178 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:12.178 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:12.188 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:23:12.188 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:23:12.188 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:12.388 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:12.588 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:12.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:12.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:12.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:12.778 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:12.778 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:12.778 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:23:13.178 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:23:13.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:13.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:13.178 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:23:13.378 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:13.448 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:13.448 -07 000000431 INF: Scanning Z-Position: -0.166961
17-03-17 17:23:13.448 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:13.448 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:13.458 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:13.458 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:13.658 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:13.658 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:13.658 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36473, sync = True, waitForSettling = True)
17-03-17 17:23:13.658 -07 000000431 INF: Z Motor: Moving to -0.166963 mm, started at -0.173477 mm, distance = 6.51 um
17-03-17 17:23:13.658 -07 000000431 INF: FPGA: Xmit ZDACW 36473\n [Z Motor]
17-03-17 17:23:13.658 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:23:13.668 -07 000000431 INF: FPGA: 'ZDACW 36473' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:13.668 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:13.668 -07 000000502 INF: FPGA: Recv ZDACR 36473
17-03-17 17:23:13.678 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.678 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:13.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.828 -07 000000480 INF: FPGA: Recv ZSGSRD 35281
17-03-17 17:23:13.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:13.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.838 -07 000000502 INF: FPGA: Recv ZSGSRD 35277
17-03-17 17:23:13.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.848 -07 000000569 INF: FPGA: Recv ZSGSRD 35279
17-03-17 17:23:13.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.858 -07 000000632 INF: FPGA: Recv ZSGSRD 35281
17-03-17 17:23:13.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.868 -07 000000480 INF: FPGA: Recv ZSGSRD 35286
17-03-17 17:23:13.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.878 -07 000000632 INF: FPGA: Recv ZSGSRD 35283
17-03-17 17:23:13.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.888 -07 000000569 INF: FPGA: Recv ZSGSRD 35278
17-03-17 17:23:13.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.898 -07 000000480 INF: FPGA: Recv ZSGSRD 35283
17-03-17 17:23:13.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.908 -07 000000502 INF: FPGA: Recv ZSGSRD 35273
17-03-17 17:23:13.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:13.918 -07 000000480 INF: FPGA: Recv ZSGSRD 35282
17-03-17 17:23:13.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.928 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:13.928 -07 000000502 INF: FPGA: Recv ZPIEZORD 30538
17-03-17 17:23:13.938 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:13.938 -07 000000431 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -10.4 V.
17-03-17 17:23:13.938 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35280 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35281 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35273 (-166.1 uncal um), Max = 35286 (-166.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:23:13.938 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35280, posNoise = 6, negNoise = 7
17-03-17 17:23:13.938 -07 000000431 INF: Z Motor: After move to -0.166963, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:13.938 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:13.938 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:13.938 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:13.938 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:13.938 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:13.938 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:13.938 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:13.938 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:13.938 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:13.948 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:13.948 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:13.958 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:13.958 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:23:13.958 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:14.158 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:14.358 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:14.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:14.358 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:14.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:14.548 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:14.548 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:14.548 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:23:14.948 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:23:14.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:14.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:14.948 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:23:15.148 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:15.158 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:15.158 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:15.168 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:15.168 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:15.368 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:15.368 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:15.368 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37783, sync = True, waitForSettling = True)
17-03-17 17:23:15.368 -07 000000431 INF: Z Motor: Moving to -0.172959 mm, started at -0.166970 mm, distance = -5.99 um
17-03-17 17:23:15.368 -07 000000431 INF: FPGA: Xmit ZDACW 37783\n [Z Motor]
17-03-17 17:23:15.378 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:23:15.378 -07 000000431 INF: FPGA: 'ZDACW 37783' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 17:23:15.378 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:15.378 -07 000000632 INF: FPGA: Recv ZDACR 37783
17-03-17 17:23:15.388 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:15.388 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:15.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36215
17-03-17 17:23:15.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:15.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.548 -07 000000433 INF: FPGA: Recv ZSGSRD 36214
17-03-17 17:23:15.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.558 -07 000000502 INF: FPGA: Recv ZSGSRD 36215
17-03-17 17:23:15.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.568 -07 000000433 INF: FPGA: Recv ZSGSRD 36214
17-03-17 17:23:15.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.578 -07 000000433 INF: FPGA: Recv ZSGSRD 36219
17-03-17 17:23:15.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.588 -07 000000458 INF: FPGA: Recv ZSGSRD 36213
17-03-17 17:23:15.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.598 -07 000000632 INF: FPGA: Recv ZSGSRD 36212
17-03-17 17:23:15.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.608 -07 000000569 INF: FPGA: Recv ZSGSRD 36217
17-03-17 17:23:15.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.618 -07 000000433 INF: FPGA: Recv ZSGSRD 36213
17-03-17 17:23:15.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:15.628 -07 000000502 INF: FPGA: Recv ZSGSRD 36215
17-03-17 17:23:15.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.638 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:15.638 -07 000000433 INF: FPGA: Recv ZPIEZORD 31781
17-03-17 17:23:15.648 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:15.648 -07 000000431 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.765 V. Piezo Error = -9.8 V.
17-03-17 17:23:15.648 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36215 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36214 (-172.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36212 (-172.1 uncal um), Max = 36219 (-172.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:23:15.648 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36215, posNoise = 4, negNoise = 3
17-03-17 17:23:15.648 -07 000000431 INF: Z Motor: After move to -0.172959, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:15.648 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:15.648 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:15.648 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:15.648 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:15.648 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:15.648 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:15.648 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:15.658 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:23:15.658 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:15.658 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:15.658 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:15.668 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:15.668 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:15.668 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:15.868 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:16.068 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:16.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:16.068 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:16.068 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:23:16.258 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:16.258 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:16.258 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 589 ms to get response, and 591 ms overall
17-03-17 17:23:16.438 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06027,
17-03-17 17:23:16.488 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:16.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:23:16.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:16.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:16.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:23:16.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:16.918 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:16.988 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:16.988 -07 000000431 INF: Scanning Z-Position: -0.166461
17-03-17 17:23:16.988 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:16.988 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:16.998 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:23:16.998 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:17.198 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:17.198 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:17.198 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36363, sync = True, waitForSettling = True)
17-03-17 17:23:17.198 -07 000000431 INF: Z Motor: Moving to -0.166459 mm, started at -0.172976 mm, distance = 6.52 um
17-03-17 17:23:17.198 -07 000000431 INF: FPGA: Xmit ZDACW 36363\n [Z Motor]
17-03-17 17:23:17.198 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:23:17.208 -07 000000431 INF: FPGA: 'ZDACW 36363' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:17.208 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:17.208 -07 000000632 INF: FPGA: Recv ZDACR 36363
17-03-17 17:23:17.218 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.218 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:17.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.368 -07 000000480 INF: FPGA: Recv ZSGSRD 35202
17-03-17 17:23:17.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:17.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.378 -07 000000458 INF: FPGA: Recv ZSGSRD 35209
17-03-17 17:23:17.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.388 -07 000000561 INF: FPGA: Recv ZSGSRD 35200
17-03-17 17:23:17.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.398 -07 000000632 INF: FPGA: Recv ZSGSRD 35203
17-03-17 17:23:17.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:17.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.408 -07 000000632 INF: FPGA: Recv ZSGSRD 35206
17-03-17 17:23:17.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.418 -07 000000458 INF: FPGA: Recv ZSGSRD 35203
17-03-17 17:23:17.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.428 -07 000000632 INF: FPGA: Recv ZSGSRD 35204
17-03-17 17:23:17.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.438 -07 000000458 INF: FPGA: Recv ZSGSRD 35202
17-03-17 17:23:17.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35200
17-03-17 17:23:17.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:17.458 -07 000000433 INF: FPGA: Recv ZSGSRD 35207
17-03-17 17:23:17.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.468 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:17.468 -07 000000569 INF: FPGA: Recv ZPIEZORD 30427
17-03-17 17:23:17.478 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:17.478 -07 000000431 INF: Z Motor: Piezo is near 45.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -10.5 V.
17-03-17 17:23:17.478 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35203 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35200 (-165.6 uncal um), Max = 35209 (-165.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:17.478 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 5, negNoise = 4
17-03-17 17:23:17.478 -07 000000431 INF: Z Motor: After move to -0.166459, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:17.478 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:17.478 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:17.478 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:17.478 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:17.478 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:17.478 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:17.478 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:17.488 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:23:17.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:17.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:17.488 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:17.498 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:23:17.498 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:23:17.498 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:17.698 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:17.898 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:17.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:17.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:17.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:18.088 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:18.088 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:18.088 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:23:18.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:23:18.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:18.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:18.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:23:18.688 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:18.698 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:18.698 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:18.708 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:23:18.708 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:18.908 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:18.908 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:18.908 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37674, sync = True, waitForSettling = True)
17-03-17 17:23:18.908 -07 000000431 INF: Z Motor: Moving to -0.172461 mm, started at -0.166481 mm, distance = -5.98 um
17-03-17 17:23:18.908 -07 000000431 INF: FPGA: Xmit ZDACW 37674\n [Z Motor]
17-03-17 17:23:18.908 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:23:18.918 -07 000000431 INF: FPGA: 'ZDACW 37674' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:18.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:18.918 -07 000000458 INF: FPGA: Recv ZDACR 37674
17-03-17 17:23:18.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:18.928 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:19.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.078 -07 000000632 INF: FPGA: Recv ZSGSRD 36144
17-03-17 17:23:19.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:19.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.088 -07 000000480 INF: FPGA: Recv ZSGSRD 36143
17-03-17 17:23:19.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.098 -07 000000632 INF: FPGA: Recv ZSGSRD 36134
17-03-17 17:23:19.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.108 -07 000000569 INF: FPGA: Recv ZSGSRD 36139
17-03-17 17:23:19.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.118 -07 000000632 INF: FPGA: Recv ZSGSRD 36133
17-03-17 17:23:19.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.128 -07 000000480 INF: FPGA: Recv ZSGSRD 36134
17-03-17 17:23:19.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36139
17-03-17 17:23:19.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.148 -07 000000569 INF: FPGA: Recv ZSGSRD 36134
17-03-17 17:23:19.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.158 -07 000000458 INF: FPGA: Recv ZSGSRD 36137
17-03-17 17:23:19.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:19.168 -07 000000632 INF: FPGA: Recv ZSGSRD 36141
17-03-17 17:23:19.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.178 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:19.178 -07 000000480 INF: FPGA: Recv ZPIEZORD 31703
17-03-17 17:23:19.188 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:19.188 -07 000000431 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -9.8 V.
17-03-17 17:23:19.188 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36138 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36138 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36133 (-171.6 uncal um), Max = 36144 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:19.188 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36138, posNoise = 6, negNoise = 5
17-03-17 17:23:19.188 -07 000000431 INF: Z Motor: After move to -0.172461, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:19.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:19.188 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:19.188 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:19.188 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:19.188 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:19.188 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:19.188 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:19.188 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:19.188 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:19.198 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:19.198 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:19.208 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:19.208 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:19.208 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:19.408 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:19.608 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:19.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:19.608 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:19.608 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:19.798 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:19.798 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:19.798 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:23:20.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:23:20.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:20.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:20.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:23:20.398 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:20.568 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:20.568 -07 000000431 INF: Scanning Z-Position: -0.165961
17-03-17 17:23:20.568 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:20.578 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:20.578 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-17 17:23:20.578 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:20.778 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:20.778 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 17:23:20.778 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36254, sync = True, waitForSettling = True)
17-03-17 17:23:20.788 -07 000000431 INF: Z Motor: Moving to -0.165960 mm, started at -0.172482 mm, distance = 6.52 um
17-03-17 17:23:20.788 -07 000000431 INF: FPGA: Xmit ZDACW 36254\n [Z Motor]
17-03-17 17:23:20.788 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:23:20.798 -07 000000431 INF: FPGA: 'ZDACW 36254' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:20.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:20.798 -07 000000632 INF: FPGA: Recv ZDACR 36254
17-03-17 17:23:20.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:20.808 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:20.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:20.958 -07 000000458 INF: FPGA: Recv ZSGSRD 35124
17-03-17 17:23:20.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:20.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:20.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35127
17-03-17 17:23:20.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:20.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:20.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35132
17-03-17 17:23:20.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:20.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:20.988 -07 000000438 INF: FPGA: Recv ZSGSRD 35122
17-03-17 17:23:20.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:20.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:20.998 -07 000000480 INF: FPGA: Recv ZSGSRD 35124
17-03-17 17:23:21.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:21.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:21.008 -07 000000569 INF: FPGA: Recv ZSGSRD 35123
17-03-17 17:23:21.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:21.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:21.018 -07 000000632 INF: FPGA: Recv ZSGSRD 35125
17-03-17 17:23:21.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:21.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:21.028 -07 000000569 INF: FPGA: Recv ZSGSRD 35128
17-03-17 17:23:21.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:21.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:21.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35117
17-03-17 17:23:21.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:21.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:21.048 -07 000000569 INF: FPGA: Recv ZSGSRD 35124
17-03-17 17:23:21.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:21.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:21.058 -07 000000569 INF: FPGA: Recv ZPIEZORD 30353
17-03-17 17:23:21.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:21.068 -07 000000431 INF: Z Motor: Piezo is near 44.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -10.5 V.
17-03-17 17:23:21.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35125 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35124 (-165.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35117 (-165.1 uncal um), Max = 35132 (-165.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:23:21.068 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35125, posNoise = 7, negNoise = 8
17-03-17 17:23:21.068 -07 000000431 INF: Z Motor: After move to -0.165960, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:21.068 -07 000000431 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:23:21.068 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:21.068 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:21.068 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:21.068 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:21.068 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:21.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:21.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:21.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:21.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:21.078 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:21.088 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:21.088 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:21.088 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:21.288 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:21.488 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:23:21.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:23:21.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:21.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:21.498 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:21.678 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:21.678 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:21.678 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:23:21.808 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.0344,
17-03-17 17:23:22.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:23:22.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:22.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:22.088 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:23:22.198 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:22.278 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:22.288 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:22.288 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:22.298 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:23:22.298 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:22.498 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:22.498 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:22.498 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37565, sync = True, waitForSettling = True)
17-03-17 17:23:22.498 -07 000000431 INF: Z Motor: Moving to -0.171962 mm, started at -0.165974 mm, distance = -5.99 um
17-03-17 17:23:22.498 -07 000000431 INF: FPGA: Xmit ZDACW 37565\n [Z Motor]
17-03-17 17:23:22.498 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:23:22.508 -07 000000431 INF: FPGA: 'ZDACW 37565' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:22.508 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:22.508 -07 000000438 INF: FPGA: Recv ZDACR 37565
17-03-17 17:23:22.518 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.518 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:22.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.668 -07 000000438 INF: FPGA: Recv ZSGSRD 36061
17-03-17 17:23:22.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:22.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.678 -07 000000480 INF: FPGA: Recv ZSGSRD 36060
17-03-17 17:23:22.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.688 -07 000000480 INF: FPGA: Recv ZSGSRD 36061
17-03-17 17:23:22.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.698 -07 000000480 INF: FPGA: Recv ZSGSRD 36061
17-03-17 17:23:22.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.708 -07 000000438 INF: FPGA: Recv ZSGSRD 36068
17-03-17 17:23:22.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.718 -07 000000438 INF: FPGA: Recv ZSGSRD 36060
17-03-17 17:23:22.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.728 -07 000000438 INF: FPGA: Recv ZSGSRD 36057
17-03-17 17:23:22.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.738 -07 000000480 INF: FPGA: Recv ZSGSRD 36057
17-03-17 17:23:22.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.748 -07 000000438 INF: FPGA: Recv ZSGSRD 36056
17-03-17 17:23:22.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:22.758 -07 000000438 INF: FPGA: Recv ZSGSRD 36062
17-03-17 17:23:22.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.768 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:22.768 -07 000000438 INF: FPGA: Recv ZPIEZORD 31608
17-03-17 17:23:22.778 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:22.778 -07 000000431 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -9.8 V.
17-03-17 17:23:22.778 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36060 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36060 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36056 (-171.1 uncal um), Max = 36068 (-171.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:22.778 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36060, posNoise = 8, negNoise = 4
17-03-17 17:23:22.778 -07 000000431 INF: Z Motor: After move to -0.171962, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:22.778 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:23:22.778 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:22.778 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:22.778 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:22.778 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:22.778 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:22.778 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:22.788 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:23:22.788 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:22.788 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:22.788 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:22.798 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:22.798 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:23:22.798 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:22.998 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:23.198 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:23.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:23.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:23.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:23.388 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:23.388 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:23.388 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:23:23.788 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:23:23.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:23.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:23.788 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:23:23.988 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:24.048 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:24.048 -07 000000431 INF: Scanning Z-Position: -0.165461
17-03-17 17:23:24.058 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:24.058 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:24.068 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.068 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:24.268 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:24.268 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:24.268 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36145, sync = True, waitForSettling = True)
17-03-17 17:23:24.268 -07 000000431 INF: Z Motor: Moving to -0.165461 mm, started at -0.171980 mm, distance = 6.52 um
17-03-17 17:23:24.268 -07 000000431 INF: FPGA: Xmit ZDACW 36145\n [Z Motor]
17-03-17 17:23:24.268 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:23:24.278 -07 000000431 INF: FPGA: 'ZDACW 36145' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:23:24.278 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:24.278 -07 000000632 INF: FPGA: Recv ZDACR 36145
17-03-17 17:23:24.288 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.288 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:24.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.438 -07 000000480 INF: FPGA: Recv ZSGSRD 35046
17-03-17 17:23:24.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:24.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.448 -07 000000632 INF: FPGA: Recv ZSGSRD 35046
17-03-17 17:23:24.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.458 -07 000000480 INF: FPGA: Recv ZSGSRD 35043
17-03-17 17:23:24.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.468 -07 000000632 INF: FPGA: Recv ZSGSRD 35050
17-03-17 17:23:24.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.478 -07 000000458 INF: FPGA: Recv ZSGSRD 35042
17-03-17 17:23:24.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.488 -07 000000458 INF: FPGA: Recv ZSGSRD 35051
17-03-17 17:23:24.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.498 -07 000000632 INF: FPGA: Recv ZSGSRD 35050
17-03-17 17:23:24.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.508 -07 000000632 INF: FPGA: Recv ZSGSRD 35047
17-03-17 17:23:24.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.518 -07 000000458 INF: FPGA: Recv ZSGSRD 35051
17-03-17 17:23:24.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:24.528 -07 000000458 INF: FPGA: Recv ZSGSRD 35042
17-03-17 17:23:24.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.538 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:24.538 -07 000000458 INF: FPGA: Recv ZPIEZORD 30272
17-03-17 17:23:24.548 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:24.548 -07 000000431 INF: Z Motor: Piezo is near 44.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.515 V. Piezo Error = -10.5 V.
17-03-17 17:23:24.548 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35047 (-164.6 uncal um), Error = 0.9 uncal um, Median = 35046 (-164.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35042 (-164.6 uncal um), Max = 35051 (-164.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:24.548 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35047, posNoise = 4, negNoise = 5
17-03-17 17:23:24.548 -07 000000431 INF: Z Motor: After move to -0.165461, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:24.548 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:24.548 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:24.548 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:24.548 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:24.548 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:24.558 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:24.558 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:24.558 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:24.558 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:24.558 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:24.558 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:24.568 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:23:24.568 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:24.578 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:24.768 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:24.968 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:24.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:24.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:24.978 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:23:25.168 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:25.168 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:25.168 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 591 ms overall
17-03-17 17:23:25.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:23:25.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:25.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:25.568 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:23:25.878 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:25.888 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:25.888 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:25.898 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:25.898 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:26.098 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:26.098 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:26.098 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37456, sync = True, waitForSettling = True)
17-03-17 17:23:26.098 -07 000000431 INF: Z Motor: Moving to -0.171463 mm, started at -0.165473 mm, distance = -5.99 um
17-03-17 17:23:26.098 -07 000000431 INF: FPGA: Xmit ZDACW 37456\n [Z Motor]
17-03-17 17:23:26.098 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:23:26.108 -07 000000431 INF: FPGA: 'ZDACW 37456' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:26.108 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:26.108 -07 000000632 INF: FPGA: Recv ZDACR 37456
17-03-17 17:23:26.118 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.118 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:26.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.268 -07 000000458 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:23:26.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:26.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.278 -07 000000458 INF: FPGA: Recv ZSGSRD 35974
17-03-17 17:23:26.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.288 -07 000000627 INF: FPGA: Recv ZSGSRD 35978
17-03-17 17:23:26.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.298 -07 000000632 INF: FPGA: Recv ZSGSRD 35983
17-03-17 17:23:26.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.308 -07 000000632 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:23:26.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.318 -07 000000632 INF: FPGA: Recv ZSGSRD 35980
17-03-17 17:23:26.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.328 -07 000000627 INF: FPGA: Recv ZSGSRD 35985
17-03-17 17:23:26.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.338 -07 000000458 INF: FPGA: Recv ZSGSRD 35977
17-03-17 17:23:26.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.348 -07 000000458 INF: FPGA: Recv ZSGSRD 35985
17-03-17 17:23:26.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:26.358 -07 000000627 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:23:26.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.368 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:26.368 -07 000000627 INF: FPGA: Recv ZPIEZORD 31525
17-03-17 17:23:26.378 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:26.378 -07 000000431 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.715 V. Piezo Error = -9.8 V.
17-03-17 17:23:26.378 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35981 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35984 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35974 (-170.5 uncal um), Max = 35985 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:23:26.378 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35981, posNoise = 4, negNoise = 7
17-03-17 17:23:26.378 -07 000000431 INF: Z Motor: After move to -0.171463, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:26.378 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:26.378 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:26.378 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:26.378 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:26.378 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:26.378 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:26.378 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:26.378 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:26.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:26.388 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:26.388 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:26.398 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:23:26.398 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:23:26.398 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:26.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:26.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:26.598 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:26.798 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:26.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:26.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:26.798 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:26.988 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:26.988 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:26.988 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:23:27.178 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.054831,
17-03-17 17:23:27.378 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 579 ms.
17-03-17 17:23:27.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:27.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:27.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:23:27.588 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:27.658 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:27.658 -07 000000431 INF: Scanning Z-Position: -0.164961
17-03-17 17:23:27.658 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:27.658 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:27.668 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:27.668 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:27.868 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:27.868 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:27.868 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36036, sync = True, waitForSettling = True)
17-03-17 17:23:27.868 -07 000000431 INF: Z Motor: Moving to -0.164962 mm, started at -0.171473 mm, distance = 6.51 um
17-03-17 17:23:27.868 -07 000000431 INF: FPGA: Xmit ZDACW 36036\n [Z Motor]
17-03-17 17:23:27.868 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:23:27.878 -07 000000431 INF: FPGA: 'ZDACW 36036' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:27.878 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:27.878 -07 000000433 INF: FPGA: Recv ZDACR 36036
17-03-17 17:23:27.888 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:27.888 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:28.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.038 -07 000000627 INF: FPGA: Recv ZSGSRD 34978
17-03-17 17:23:29.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 990 ms to get response, and 1000 ms overall
17-03-17 17:23:29.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.038 -07 000000438 INF: FPGA: Recv ZSGSRD 34980
17-03-17 17:23:29.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.048 -07 000000438 INF: FPGA: Recv ZSGSRD 34974
17-03-17 17:23:29.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.058 -07 000000541 INF: FPGA: Recv ZSGSRD 34973
17-03-17 17:23:29.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.068 -07 000000627 INF: FPGA: Recv ZSGSRD 34972
17-03-17 17:23:29.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.078 -07 000000541 INF: FPGA: Recv ZSGSRD 34967
17-03-17 17:23:29.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.088 -07 000000433 INF: FPGA: Recv ZSGSRD 34968
17-03-17 17:23:29.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.098 -07 000000541 INF: FPGA: Recv ZSGSRD 34972
17-03-17 17:23:29.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.108 -07 000000438 INF: FPGA: Recv ZSGSRD 34975
17-03-17 17:23:29.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:29.118 -07 000000627 INF: FPGA: Recv ZSGSRD 34970
17-03-17 17:23:29.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.128 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:29.128 -07 000000502 INF: FPGA: Recv ZPIEZORD 30188
17-03-17 17:23:29.138 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:29.138 -07 000000431 INF: Z Motor: Piezo is near 44.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.499 V. Piezo Error = -10.5 V.
17-03-17 17:23:29.138 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34973 (-164.1 uncal um), Error = 0.8 uncal um, Median = 34972 (-164.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 34967 (-164.1 uncal um), Max = 34980 (-164.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:23:29.138 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34973, posNoise = 7, negNoise = 6
17-03-17 17:23:29.138 -07 000000431 INF: Z Motor: After move to -0.164962, error = -0.000035, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:29.138 -07 000000431 INF: Z Motor: MoveAbsStepped took 1265 ms)
17-03-17 17:23:29.138 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:29.138 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:29.138 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:29.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:29.138 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:29.138 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:29.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:29.138 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:29.148 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:29.148 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:29.158 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:23:29.158 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:23:29.158 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:29.358 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:29.558 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:29.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:29.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:29.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:29.748 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:29.748 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:29.748 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:23:30.148 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:23:30.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:30.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:30.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:23:30.348 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:30.368 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:30.368 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:30.378 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.378 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:30.578 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:30.578 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:30.578 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37346, sync = True, waitForSettling = True)
17-03-17 17:23:30.578 -07 000000431 INF: Z Motor: Moving to -0.170959 mm, started at -0.164997 mm, distance = -5.96 um
17-03-17 17:23:30.578 -07 000000431 INF: FPGA: Xmit ZDACW 37346\n [Z Motor]
17-03-17 17:23:30.578 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:23:30.588 -07 000000431 INF: FPGA: 'ZDACW 37346' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:30.588 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:30.588 -07 000000502 INF: FPGA: Recv ZDACR 37346
17-03-17 17:23:30.598 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.598 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:30.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.748 -07 000000433 INF: FPGA: Recv ZSGSRD 35903
17-03-17 17:23:30.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:30.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.758 -07 000000502 INF: FPGA: Recv ZSGSRD 35914
17-03-17 17:23:30.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.768 -07 000000433 INF: FPGA: Recv ZSGSRD 35905
17-03-17 17:23:30.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.778 -07 000000569 INF: FPGA: Recv ZSGSRD 35903
17-03-17 17:23:30.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.788 -07 000000438 INF: FPGA: Recv ZSGSRD 35907
17-03-17 17:23:30.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35904
17-03-17 17:23:30.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.808 -07 000000433 INF: FPGA: Recv ZSGSRD 35902
17-03-17 17:23:30.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.818 -07 000000627 INF: FPGA: Recv ZSGSRD 35900
17-03-17 17:23:30.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.828 -07 000000502 INF: FPGA: Recv ZSGSRD 35905
17-03-17 17:23:30.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:30.838 -07 000000627 INF: FPGA: Recv ZSGSRD 35906
17-03-17 17:23:30.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.848 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:30.848 -07 000000438 INF: FPGA: Recv ZPIEZORD 31440
17-03-17 17:23:30.858 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:30.858 -07 000000431 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.8 V.
17-03-17 17:23:30.858 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35905 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35904 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35900 (-170.1 uncal um), Max = 35914 (-170.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:30.858 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35905, posNoise = 9, negNoise = 5
17-03-17 17:23:30.858 -07 000000431 INF: Z Motor: After move to -0.170959, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:30.858 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:30.858 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:30.858 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:30.858 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:30.858 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:30.858 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:30.858 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:30.868 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:30.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:30.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:30.868 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:30.878 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:30.878 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:30.878 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:31.078 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 194
17-03-17 17:23:31.278 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 394
17-03-17 17:23:31.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 394
17-03-17 17:23:31.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:31.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:31.468 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:31.468 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:31.468 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:23:31.488 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:31.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:23:31.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:31.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:31.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:23:31.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:32.068 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:32.138 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:32.138 -07 000000431 INF: Scanning Z-Position: -0.164461
17-03-17 17:23:32.138 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:32.138 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:32.148 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:32.148 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:32.348 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:32.348 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:32.348 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 35927, sync = True, waitForSettling = True)
17-03-17 17:23:32.348 -07 000000431 INF: Z Motor: Moving to -0.164463 mm, started at -0.170985 mm, distance = 6.52 um
17-03-17 17:23:32.348 -07 000000431 INF: FPGA: Xmit ZDACW 35927\n [Z Motor]
17-03-17 17:23:32.348 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:23:32.358 -07 000000431 INF: FPGA: 'ZDACW 35927' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:32.358 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:32.358 -07 000000569 INF: FPGA: Recv ZDACR 35927
17-03-17 17:23:32.368 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:32.368 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:32.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.518 -07 000000382 INF: FPGA: Recv ZSGSRD 34893
17-03-17 17:23:32.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:32.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.528 -07 000000541 INF: FPGA: Recv ZSGSRD 34891
17-03-17 17:23:32.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:32.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.538 -07 000000561 INF: FPGA: Recv ZSGSRD 34891
17-03-17 17:23:32.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:32.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.558 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.045313,
17-03-17 17:23:32.558 -07 000000382 INF: FPGA: Recv ZSGSRD 34897
17-03-17 17:23:32.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:23:32.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.578 -07 000000438 INF: FPGA: Recv ZSGSRD 34884
17-03-17 17:23:32.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:23:32.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.588 -07 000000502 INF: FPGA: Recv ZSGSRD 34891
17-03-17 17:23:32.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:32.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.608 -07 000000438 INF: FPGA: Recv ZSGSRD 34892
17-03-17 17:23:32.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:23:32.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.618 -07 000000627 INF: FPGA: Recv ZSGSRD 34895
17-03-17 17:23:32.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:32.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.638 -07 000000382 INF: FPGA: Recv ZSGSRD 34890
17-03-17 17:23:32.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:23:32.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:32.648 -07 000000433 INF: FPGA: Recv ZSGSRD 34893
17-03-17 17:23:32.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:32.668 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:32.668 -07 000000627 INF: FPGA: Recv ZPIEZORD 30103
17-03-17 17:23:32.678 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:23:32.678 -07 000000431 INF: Z Motor: Piezo is near 44.3 V (nominally 0 to 100 V), expect near 54.8 V, since DAC is at 5.482 V. Piezo Error = -10.5 V.
17-03-17 17:23:32.678 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.5 um, Read 10 ADC samples: Avg = 34892 (-163.6 uncal um), Error = 0.8 uncal um, Median = 34892 (-163.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 34884 (-163.6 uncal um), Max = 34897 (-163.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:23:32.678 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34892, posNoise = 5, negNoise = 8
17-03-17 17:23:32.678 -07 000000431 INF: Z Motor: After move to -0.164463, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:32.678 -07 000000431 INF: Z Motor: MoveAbsStepped took 325 ms)
17-03-17 17:23:32.678 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:32.678 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:32.678 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:32.678 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:32.678 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:32.678 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:32.688 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:32.688 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:32.688 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:32.688 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:32.698 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:32.698 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:32.708 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:32.898 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:33.098 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:33.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:33.098 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:33.098 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:33.288 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:33.288 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:33.288 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:23:33.688 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:23:33.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:33.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:33.688 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:23:33.898 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:33.908 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:33.908 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:33.918 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:33.918 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:34.118 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:34.118 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:34.118 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37237, sync = True, waitForSettling = True)
17-03-17 17:23:34.118 -07 000000431 INF: Z Motor: Moving to -0.170460 mm, started at -0.164477 mm, distance = -5.98 um
17-03-17 17:23:34.118 -07 000000431 INF: FPGA: Xmit ZDACW 37237\n [Z Motor]
17-03-17 17:23:34.118 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:23:34.128 -07 000000431 INF: FPGA: 'ZDACW 37237' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:23:34.128 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:34.128 -07 000000502 INF: FPGA: Recv ZDACR 37237
17-03-17 17:23:34.138 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.138 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:34.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.288 -07 000000502 INF: FPGA: Recv ZSGSRD 35824
17-03-17 17:23:34.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:34.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35826
17-03-17 17:23:34.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.308 -07 000000433 INF: FPGA: Recv ZSGSRD 35827
17-03-17 17:23:34.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.318 -07 000000627 INF: FPGA: Recv ZSGSRD 35823
17-03-17 17:23:34.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.328 -07 000000627 INF: FPGA: Recv ZSGSRD 35828
17-03-17 17:23:34.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35821
17-03-17 17:23:34.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.348 -07 000000627 INF: FPGA: Recv ZSGSRD 35824
17-03-17 17:23:34.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.358 -07 000000627 INF: FPGA: Recv ZSGSRD 35826
17-03-17 17:23:34.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.368 -07 000000561 INF: FPGA: Recv ZSGSRD 35826
17-03-17 17:23:34.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:34.378 -07 000000627 INF: FPGA: Recv ZSGSRD 35831
17-03-17 17:23:34.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.388 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:34.388 -07 000000433 INF: FPGA: Recv ZPIEZORD 31353
17-03-17 17:23:34.398 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:34.398 -07 000000431 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.8 V.
17-03-17 17:23:34.398 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35826 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35826 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35821 (-169.6 uncal um), Max = 35831 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:34.398 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35826, posNoise = 5, negNoise = 5
17-03-17 17:23:34.398 -07 000000431 INF: Z Motor: After move to -0.170460, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:34.398 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:34.398 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:34.398 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:34.398 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:34.398 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:34.408 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:34.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:34.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:23:34.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:34.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:34.408 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:34.418 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:34.418 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:34.418 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:34.618 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:34.818 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:34.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:34.818 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:34.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:23:35.008 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:35.008 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:35.008 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:23:35.408 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:23:35.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:35.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:35.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:23:35.718 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:35.788 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:35.788 -07 000000431 INF: Scanning Z-Position: -0.163961
17-03-17 17:23:35.788 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:35.788 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:35.798 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:23:35.798 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:35.998 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:35.998 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:35.998 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 35817, sync = True, waitForSettling = True)
17-03-17 17:23:35.998 -07 000000431 INF: Z Motor: Moving to -0.163960 mm, started at -0.170477 mm, distance = 6.52 um
17-03-17 17:23:35.998 -07 000000431 INF: FPGA: Xmit ZDACW 35817\n [Z Motor]
17-03-17 17:23:35.998 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:23:36.008 -07 000000431 INF: FPGA: 'ZDACW 35817' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:36.008 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:36.008 -07 000000438 INF: FPGA: Recv ZDACR 35817
17-03-17 17:23:36.018 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.018 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:36.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.168 -07 000000438 INF: FPGA: Recv ZSGSRD 34819
17-03-17 17:23:36.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:36.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.178 -07 000000429 INF: FPGA: Recv ZSGSRD 34812
17-03-17 17:23:36.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.188 -07 000000541 INF: FPGA: Recv ZSGSRD 34815
17-03-17 17:23:36.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.198 -07 000000438 INF: FPGA: Recv ZSGSRD 34813
17-03-17 17:23:36.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.208 -07 000000438 INF: FPGA: Recv ZSGSRD 34816
17-03-17 17:23:36.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.218 -07 000000438 INF: FPGA: Recv ZSGSRD 34812
17-03-17 17:23:36.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.228 -07 000000438 INF: FPGA: Recv ZSGSRD 34808
17-03-17 17:23:36.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.238 -07 000000438 INF: FPGA: Recv ZSGSRD 34814
17-03-17 17:23:36.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.248 -07 000000541 INF: FPGA: Recv ZSGSRD 34814
17-03-17 17:23:36.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:36.258 -07 000000429 INF: FPGA: Recv ZSGSRD 34815
17-03-17 17:23:36.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.268 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:36.268 -07 000000429 INF: FPGA: Recv ZPIEZORD 30022
17-03-17 17:23:36.278 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:36.278 -07 000000431 INF: Z Motor: Piezo is near 44.1 V (nominally 0 to 100 V), expect near 54.7 V, since DAC is at 5.465 V. Piezo Error = -10.5 V.
17-03-17 17:23:36.278 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.0 um, Read 10 ADC samples: Avg = 34814 (-163.1 uncal um), Error = 0.8 uncal um, Median = 34814 (-163.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34808 (-163.1 uncal um), Max = 34819 (-163.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:23:36.278 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34814, posNoise = 5, negNoise = 6
17-03-17 17:23:36.278 -07 000000431 INF: Z Motor: After move to -0.163960, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:36.278 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:36.278 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:36.278 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:36.278 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:36.278 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:36.278 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:36.278 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:36.278 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:36.278 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:36.288 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:23:36.288 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:36.298 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:36.298 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:36.298 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:36.488 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:36.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:36.498 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:36.698 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:36.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:36.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:36.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:36.888 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:36.888 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:36.888 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:23:37.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 591 ms.
17-03-17 17:23:37.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:37.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:37.298 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-17 17:23:37.488 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:37.498 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:37.498 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:37.508 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:23:37.508 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:37.708 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:37.708 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:37.708 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37128, sync = True, waitForSettling = True)
17-03-17 17:23:37.708 -07 000000431 INF: Z Motor: Moving to -0.169961 mm, started at -0.163976 mm, distance = -5.99 um
17-03-17 17:23:37.708 -07 000000431 INF: FPGA: Xmit ZDACW 37128\n [Z Motor]
17-03-17 17:23:37.708 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:23:37.718 -07 000000431 INF: FPGA: 'ZDACW 37128' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:37.718 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:37.718 -07 000000429 INF: FPGA: Recv ZDACR 37128
17-03-17 17:23:37.728 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.728 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:37.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.878 -07 000000429 INF: FPGA: Recv ZSGSRD 35745
17-03-17 17:23:37.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:37.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.888 -07 000000627 INF: FPGA: Recv ZSGSRD 35746
17-03-17 17:23:37.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.898 -07 000000429 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:23:37.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.908 -07 000000438 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:23:37.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.918 -07 000000438 INF: FPGA: Recv ZSGSRD 35749
17-03-17 17:23:37.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.928 -07 000000541 INF: FPGA: Recv ZSGSRD 35747
17-03-17 17:23:37.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.938 -07 000000561 INF: FPGA: Recv ZSGSRD 35750
17-03-17 17:23:37.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35747
17-03-17 17:23:37.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.958 -07 000000438 INF: FPGA: Recv ZSGSRD 35750
17-03-17 17:23:37.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:37.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35744
17-03-17 17:23:37.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:37.988 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:37.988 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.052111,
17-03-17 17:23:37.988 -07 000000429 INF: FPGA: Recv ZPIEZORD 31315
17-03-17 17:23:37.998 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:23:37.998 -07 000000431 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.665 V. Piezo Error = -9.8 V.
17-03-17 17:23:37.998 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35748 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35744 (-169.1 uncal um), Max = 35751 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:37.998 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35748, posNoise = 3, negNoise = 4
17-03-17 17:23:37.998 -07 000000431 INF: Z Motor: After move to -0.169961, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:37.998 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:23:37.998 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:37.998 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:37.998 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:37.998 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:38.008 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:38.008 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:38.008 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:23:38.008 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:38.008 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:38.008 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:38.018 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:38.018 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:38.038 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:38.228 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:38.428 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:38.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:38.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:38.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:38.628 -07 000000618 INF: FPGA: Recv @CAMSNAP 587
17-03-17 17:23:38.628 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:38.628 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 601 ms overall
17-03-17 17:23:39.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 592 ms.
17-03-17 17:23:39.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:39.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:39.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:23:39.228 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:39.398 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:39.398 -07 000000431 INF: Scanning Z-Position: -0.163461
17-03-17 17:23:39.408 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:39.408 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:39.418 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.418 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:39.618 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:39.618 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:39.618 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 35708, sync = True, waitForSettling = True)
17-03-17 17:23:39.618 -07 000000431 INF: Z Motor: Moving to -0.163461 mm, started at -0.169976 mm, distance = 6.52 um
17-03-17 17:23:39.618 -07 000000431 INF: FPGA: Xmit ZDACW 35708\n [Z Motor]
17-03-17 17:23:39.628 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:23:39.628 -07 000000431 INF: FPGA: 'ZDACW 35708' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 17:23:39.628 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:39.628 -07 000000480 INF: FPGA: Recv ZDACR 35708
17-03-17 17:23:39.638 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:39.638 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:39.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.788 -07 000000569 INF: FPGA: Recv ZSGSRD 34737
17-03-17 17:23:39.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:39.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.798 -07 000000480 INF: FPGA: Recv ZSGSRD 34740
17-03-17 17:23:39.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.808 -07 000000438 INF: FPGA: Recv ZSGSRD 34740
17-03-17 17:23:39.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.818 -07 000000480 INF: FPGA: Recv ZSGSRD 34739
17-03-17 17:23:39.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.828 -07 000000438 INF: FPGA: Recv ZSGSRD 34730
17-03-17 17:23:39.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.838 -07 000000480 INF: FPGA: Recv ZSGSRD 34739
17-03-17 17:23:39.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.848 -07 000000438 INF: FPGA: Recv ZSGSRD 34739
17-03-17 17:23:39.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.858 -07 000000480 INF: FPGA: Recv ZSGSRD 34735
17-03-17 17:23:39.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.868 -07 000000632 INF: FPGA: Recv ZSGSRD 34737
17-03-17 17:23:39.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:39.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:39.878 -07 000000627 INF: FPGA: Recv ZSGSRD 34734
17-03-17 17:23:39.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.888 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:39.888 -07 000000424 INF: FPGA: Recv ZPIEZORD 29935
17-03-17 17:23:39.898 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:39.898 -07 000000431 INF: Z Motor: Piezo is near 43.9 V (nominally 0 to 100 V), expect near 54.5 V, since DAC is at 5.449 V. Piezo Error = -10.5 V.
17-03-17 17:23:39.898 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -163.5 um, Read 10 ADC samples: Avg = 34737 (-162.6 uncal um), Error = 0.8 uncal um, Median = 34738 (-162.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34730 (-162.6 uncal um), Max = 34740 (-162.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:23:39.898 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34737, posNoise = 3, negNoise = 7
17-03-17 17:23:39.898 -07 000000431 INF: Z Motor: After move to -0.163461, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:39.898 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:39.898 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:39.898 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:39.898 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:39.898 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:39.898 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:39.898 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:39.898 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:39.898 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:39.908 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:39.908 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:39.918 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:23:39.918 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:23:39.918 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:40.118 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:40.318 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:40.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:40.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:40.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:40.508 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:40.508 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:40.508 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:23:40.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 592 ms.
17-03-17 17:23:40.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:40.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:40.908 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:23:41.108 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:41.118 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:41.118 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:41.128 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:41.128 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:23:41.328 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:23:41.328 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:41.328 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37019, sync = True, waitForSettling = True)
17-03-17 17:23:41.328 -07 000000431 INF: Z Motor: Moving to -0.169462 mm, started at -0.163481 mm, distance = -5.98 um
17-03-17 17:23:41.328 -07 000000431 INF: FPGA: Xmit ZDACW 37019\n [Z Motor]
17-03-17 17:23:41.328 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:23:41.338 -07 000000431 INF: FPGA: 'ZDACW 37019' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:23:41.338 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:41.338 -07 000000433 INF: FPGA: Recv ZDACR 37019
17-03-17 17:23:41.348 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.348 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:41.488 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:41.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:41.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.498 -07 000000569 INF: FPGA: Recv ZSGSRD 35672
17-03-17 17:23:41.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:41.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.508 -07 000000480 INF: FPGA: Recv ZSGSRD 35672
17-03-17 17:23:41.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.518 -07 000000618 INF: FPGA: Recv ZSGSRD 35670
17-03-17 17:23:41.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:23:41.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.538 -07 000000569 INF: FPGA: Recv ZSGSRD 35678
17-03-17 17:23:41.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.548 -07 000000480 INF: FPGA: Recv ZSGSRD 35667
17-03-17 17:23:41.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.558 -07 000000618 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:23:41.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.568 -07 000000480 INF: FPGA: Recv ZSGSRD 35670
17-03-17 17:23:41.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.578 -07 000000618 INF: FPGA: Recv ZSGSRD 35665
17-03-17 17:23:41.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:41.588 -07 000000480 INF: FPGA: Recv ZSGSRD 35672
17-03-17 17:23:41.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.598 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:41.598 -07 000000561 INF: FPGA: Recv ZPIEZORD 31194
17-03-17 17:23:41.608 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:41.608 -07 000000431 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.8 V.
17-03-17 17:23:41.608 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35670 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35670 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35665 (-168.6 uncal um), Max = 35678 (-168.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:41.608 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35670, posNoise = 8, negNoise = 5
17-03-17 17:23:41.608 -07 000000431 INF: Z Motor: After move to -0.169462, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:41.608 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:41.608 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:41.608 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:41.608 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:41.608 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:41.608 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:41.608 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:41.618 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:41.618 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:41.618 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:41.618 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:41.628 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:41.628 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:23:41.628 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:41.828 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:42.028 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:42.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:42.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:42.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:42.218 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:42.218 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:42.218 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:23:42.618 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 594 ms.
17-03-17 17:23:42.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:42.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:42.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 599 ms.
17-03-17 17:23:42.818 -07 000000431 INF: MeasureProfile start
17-03-17 17:23:42.878 -07 000000431 INF: MeasureProfile done
17-03-17 17:23:42.878 -07 000000431 INF: Through-focus: Z pos. [um] vs. Focus metric
17-03-17 17:23:42.878 -07 000000431 INF:   -183.461  2.14574
17-03-17 17:23:42.878 -07 000000431 INF:   -182.961  2.151867
17-03-17 17:23:42.878 -07 000000431 INF:   -182.461  2.152016
17-03-17 17:23:42.878 -07 000000431 INF:   -181.961  2.151296
17-03-17 17:23:42.878 -07 000000431 INF:   -181.461  2.157045
17-03-17 17:23:42.888 -07 000000431 INF:   -180.961  2.162372
17-03-17 17:23:42.888 -07 000000431 INF:   -180.461  2.171716
17-03-17 17:23:42.888 -07 000000431 INF:   -179.961  2.173836
17-03-17 17:23:42.888 -07 000000431 INF:   -179.461  2.194673
17-03-17 17:23:42.888 -07 000000431 INF:   -178.961  2.196985
17-03-17 17:23:42.888 -07 000000431 INF:   -178.461  2.217076
17-03-17 17:23:42.888 -07 000000431 INF:   -177.961  2.239856
17-03-17 17:23:42.888 -07 000000431 INF:   -177.461  2.269627
17-03-17 17:23:42.888 -07 000000431 INF:   -176.961  2.329586
17-03-17 17:23:42.888 -07 000000431 INF:   -176.461  2.415605
17-03-17 17:23:42.888 -07 000000431 INF:   -175.961  2.57051
17-03-17 17:23:42.888 -07 000000431 INF:   -175.461  2.825883
17-03-17 17:23:42.888 -07 000000431 INF:   -174.961  3.40318
17-03-17 17:23:42.888 -07 000000431 INF:   -174.461  4.525494
17-03-17 17:23:42.888 -07 000000431 INF:   -173.961  6.503659
17-03-17 17:23:42.888 -07 000000431 INF:   -173.461  9.057141
17-03-17 17:23:42.888 -07 000000431 INF:   -172.961  10.57604
17-03-17 17:23:42.888 -07 000000431 INF:   -172.461  9.995793
17-03-17 17:23:42.888 -07 000000431 INF:   -171.961  7.834745
17-03-17 17:23:42.888 -07 000000431 INF:   -171.461  5.428885
17-03-17 17:23:42.888 -07 000000431 INF:   -170.961  3.809577
17-03-17 17:23:42.888 -07 000000431 INF:   -170.461  2.983284
17-03-17 17:23:42.888 -07 000000431 INF:   -169.961  2.571976
17-03-17 17:23:42.888 -07 000000431 INF:   -169.461  2.366791
17-03-17 17:23:42.888 -07 000000431 INF:   -168.961  2.268212
17-03-17 17:23:42.888 -07 000000431 INF:   -168.461  2.215221
17-03-17 17:23:42.888 -07 000000431 INF:   -167.961  2.185298
17-03-17 17:23:42.888 -07 000000431 INF:   -167.461  2.165505
17-03-17 17:23:42.888 -07 000000431 INF:   -166.961  2.162763
17-03-17 17:23:42.888 -07 000000431 INF:   -166.461  2.158973
17-03-17 17:23:42.888 -07 000000431 INF:   -165.961  2.149588
17-03-17 17:23:42.888 -07 000000431 INF:   -165.461  2.145885
17-03-17 17:23:42.888 -07 000000431 INF:   -164.961  2.148884
17-03-17 17:23:42.888 -07 000000431 INF:   -164.461  2.148113
17-03-17 17:23:42.888 -07 000000431 INF:   -163.961  2.146322
17-03-17 17:23:42.888 -07 000000431 INF:   -163.461  2.151569
17-03-17 17:23:42.888 -07 000000431 INF: Best-focus Z [um]: -172.8797
17-03-17 17:23:42.888 -07 000000431 INF: ===================  ===================
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with deviant X-shift: Z=6.418705 um, X=0
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with deviant X-shift: Z=9.418711 um, X=-2592
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with outlier X-shift: Z=6.418705 um, X=0
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with outlier X-shift: Z=6.918714 um, X=0
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with outlier X-shift: Z=7.418707 um, X=0
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with outlier X-shift: Z=7.918715 um, X=0
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with outlier X-shift: Z=8.418709 um, X=2576
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with outlier X-shift: Z=8.918717 um, X=2576
17-03-17 17:23:42.888 -07 000000431 INF: Discarding point with outlier X-shift: Z=9.418711 um, X=-2592
17-03-17 17:23:42.888 -07 000000431 INF: Z [um] vs. Xshift [pixels]:
17-03-17 17:23:42.888 -07 000000431 INF:   -10.58128  -1728 **
17-03-17 17:23:42.888 -07 000000431 INF:   -10.08129  -1664 **
17-03-17 17:23:42.888 -07 000000431 INF:   -9.581283  -1584 **
17-03-17 17:23:42.888 -07 000000431 INF:   -9.081289  -1536 **
17-03-17 17:23:42.888 -07 000000431 INF:   -8.581296  -1472 **
17-03-17 17:23:42.888 -07 000000431 INF:   -8.081287  -1408 **
17-03-17 17:23:42.888 -07 000000431 INF:   -7.581294  -1344 **
17-03-17 17:23:42.888 -07 000000431 INF:   -7.081285  -1280 **
17-03-17 17:23:42.888 -07 000000431 INF:   -6.581292  -1184 **
17-03-17 17:23:42.888 -07 000000431 INF:   -6.081283  -1104 **
17-03-17 17:23:42.888 -07 000000431 INF:   -5.581289  -1024 **
17-03-17 17:23:42.888 -07 000000431 INF:   -5.081296  -928 **
17-03-17 17:23:42.888 -07 000000431 INF:   -4.581287  -832 **
17-03-17 17:23:42.888 -07 000000431 INF:   -4.081294  -752 **
17-03-17 17:23:42.888 -07 000000431 INF:   -3.581285  -656 **
17-03-17 17:23:42.888 -07 000000431 INF:   -3.081292  -560 **
17-03-17 17:23:42.888 -07 000000431 INF:   -2.581284  -464 **
17-03-17 17:23:42.888 -07 000000431 INF:   -2.08129  -384 **
17-03-17 17:23:42.888 -07 000000431 INF:   -1.581296  -288 **
17-03-17 17:23:42.888 -07 000000431 INF:   -1.081288  -192 **
17-03-17 17:23:42.888 -07 000000431 INF:   -0.5812943  -96 **
17-03-17 17:23:42.888 -07 000000431 INF:   -0.08128583  0 **
17-03-17 17:23:42.888 -07 000000431 INF:   0.4187077  96 **
17-03-17 17:23:42.888 -07 000000431 INF:   0.9187162  192 **
17-03-17 17:23:42.888 -07 000000431 INF:   1.41871  288 **
17-03-17 17:23:42.888 -07 000000431 INF:   1.918718  400 **
17-03-17 17:23:42.888 -07 000000431 INF:   2.418712  496 **
17-03-17 17:23:42.888 -07 000000431 INF:   2.918705  592 **
17-03-17 17:23:42.888 -07 000000431 INF:   3.418714  688 **
17-03-17 17:23:42.888 -07 000000431 INF:   3.918707  784 **
17-03-17 17:23:42.888 -07 000000431 INF:   4.418716  864 **
17-03-17 17:23:42.888 -07 000000431 INF:   4.918709  960 **
17-03-17 17:23:42.888 -07 000000431 INF:   5.418718  1056 **
17-03-17 17:23:42.888 -07 000000431 INF:   5.918712  1152 **
17-03-17 17:23:42.888 -07 000000431 INF:   6.418705  0
17-03-17 17:23:42.888 -07 000000431 INF:   6.918714  0
17-03-17 17:23:42.888 -07 000000431 INF:   7.418707  0
17-03-17 17:23:42.888 -07 000000431 INF:   7.918715  0
17-03-17 17:23:42.888 -07 000000431 INF:   8.418709  2576
17-03-17 17:23:42.888 -07 000000431 INF:   8.918717  2576
17-03-17 17:23:42.888 -07 000000431 INF:   9.418711  -2592
17-03-17 17:23:42.888 -07 000000431 INF: X=-1728  Z correction [um]=-10.59889
17-03-17 17:23:42.888 -07 000000431 INF: X=-1664  Z correction [um]=-10.10507
17-03-17 17:23:42.888 -07 000000431 INF: X=-1584  Z correction [um]=-9.487785
17-03-17 17:23:42.888 -07 000000431 INF: X=-1536  Z correction [um]=-9.117416
17-03-17 17:23:42.888 -07 000000431 INF: X=-1472  Z correction [um]=-8.5392
17-03-17 17:23:42.888 -07 000000431 INF: X=-1408  Z correction [um]=-8.076206
17-03-17 17:23:42.888 -07 000000431 INF: X=-1344  Z correction [um]=-7.613212
17-03-17 17:23:42.898 -07 000000431 INF: X=-1280  Z correction [um]=-7.150218
17-03-17 17:23:42.898 -07 000000431 INF: X=-1184  Z correction [um]=-6.56437
17-03-17 17:23:42.898 -07 000000431 INF: X=-1104  Z correction [um]=-6.072991
17-03-17 17:23:42.898 -07 000000431 INF: X=-1024  Z correction [um]=-5.581612
17-03-17 17:23:42.898 -07 000000431 INF: X=-928  Z correction [um]=-5.084465
17-03-17 17:23:42.898 -07 000000431 INF: X=-832  Z correction [um]=-4.548478
17-03-17 17:23:42.898 -07 000000431 INF: X=-752  Z correction [um]=-4.101823
17-03-17 17:23:42.898 -07 000000431 INF: X=-656  Z correction [um]=-3.594203
17-03-17 17:23:42.898 -07 000000431 INF: X=-560  Z correction [um]=-3.068374
17-03-17 17:23:42.898 -07 000000431 INF: X=-464  Z correction [um]=-2.545946
17-03-17 17:23:42.898 -07 000000431 INF: X=-384  Z correction [um]=-2.11159
17-03-17 17:23:42.898 -07 000000431 INF: X=-288  Z correction [um]=-1.590364
17-03-17 17:23:42.898 -07 000000431 INF: X=-192  Z correction [um]=-1.081588
17-03-17 17:23:42.898 -07 000000431 INF: X=-96  Z correction [um]=-0.5732754
17-03-17 17:23:42.898 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:23:42.898 -07 000000431 INF: X=96  Z correction [um]=0.4193256
17-03-17 17:23:42.898 -07 000000431 INF: X=192  Z correction [um]=0.9100034
17-03-17 17:23:42.898 -07 000000431 INF: X=288  Z correction [um]=1.385088
17-03-17 17:23:42.898 -07 000000431 INF: X=400  Z correction [um]=1.947843
17-03-17 17:23:42.898 -07 000000431 INF: X=496  Z correction [um]=2.430204
17-03-17 17:23:42.898 -07 000000431 INF: X=592  Z correction [um]=2.910147
17-03-17 17:23:42.898 -07 000000431 INF: X=688  Z correction [um]=3.414746
17-03-17 17:23:42.898 -07 000000431 INF: X=784  Z correction [um]=3.954053
17-03-17 17:23:42.898 -07 000000431 INF: X=864  Z correction [um]=4.388412
17-03-17 17:23:42.898 -07 000000431 INF: X=960  Z correction [um]=4.909641
17-03-17 17:23:42.898 -07 000000431 INF: X=1056  Z correction [um]=5.418418
17-03-17 17:23:42.898 -07 000000431 INF: X=1152  Z correction [um]=5.926729
17-03-17 17:23:42.898 -07 000000431 INF: Focus model: 
17-03-17 17:23:42.898 -07 000000431 INF:   0.002474772 7.559004E-06
17-03-17 17:23:42.898 -07 000000431 INF:   0.002474772 7.559004E-06
17-03-17 17:23:42.898 -07 000000431 INF:   0.002474772 7.559004E-06
17-03-17 17:23:42.898 -07 000000431 INF:   0.002994053 7.873064E-06
17-03-17 17:23:42.898 -07 000000431 INF:   0.001225263 6.595493E-06
17-03-17 17:23:42.898 -07 000000431 INF:   0.0001908185 5.688986E-06
17-03-17 17:23:42.898 -07 000000431 INF:   2.659463E-06 5.477401E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -4.732493E-06 5.477375E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -4.86359E-05 5.381512E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -8.128882E-05 5.208344E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -6.141558E-05 5.014111E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -6.257388E-05 5.035076E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -0.0003405254 5.477412E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -0.0002647839 5.381537E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -8.121133E-05 5.208266E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -8.121133E-05 5.208266E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -8.121133E-05 5.208266E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -8.121133E-05 5.208266E-06
17-03-17 17:23:42.898 -07 000000431 INF:   -8.121133E-05 5.208266E-06
17-03-17 17:23:42.898 -07 000000431 INF: Gain [nm/pix]: 5.859404 
Trusted operating range for this model  [um]: -5.918712 -- 10 
Median deviation from model  [nm]: 12.9177933558822 
Median deviation from model over trusted range  [nm]: 12.9177933558822
17-03-17 17:23:42.898 -07 000000431 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:23:42.898 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 17:23:42.908 -07 000000431 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:42.908 -07 000000431 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 17:23:43.358 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06163,
17-03-17 17:23:43.408 -07 000000433 INF: FPGA: Recv EMIN
17-03-17 17:23:43.408 -07 000000431 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:23:43.408 -07 000000431 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 17:23:43.408 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 17:23:43.418 -07 000000431 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:43.418 -07 000000431 INF: ----- Focus Model Scan: Starting Coarse Focus on tile 1. ------
17-03-17 17:23:43.418 -07 000000431 INF: =================== Performing CoarseFocus. ===================
17-03-17 17:23:43.418 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:23:43.418 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:23:43.428 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:43.428 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:23:43.628 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:23:43.628 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:23:43.628 -07 000000431 INF: Scanning Z-Position: -0.17788
17-03-17 17:23:43.628 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38858, sync = True, waitForSettling = True)
17-03-17 17:23:43.628 -07 000000431 INF: Z Motor: Moving to -0.177881 mm, started at -0.169475 mm, distance = -8.41 um
17-03-17 17:23:43.628 -07 000000431 INF: FPGA: Xmit ZDACW 38858\n [Z Motor]
17-03-17 17:23:43.628 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:23:43.638 -07 000000431 INF: FPGA: 'ZDACW 38858' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:23:43.638 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:43.638 -07 000000561 INF: FPGA: Recv ZDACR 38858
17-03-17 17:23:43.648 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.648 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:43.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.798 -07 000000502 INF: FPGA: Recv ZSGSRD 36986
17-03-17 17:23:43.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:43.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.808 -07 000000618 INF: FPGA: Recv ZSGSRD 36985
17-03-17 17:23:43.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.818 -07 000000502 INF: FPGA: Recv ZSGSRD 36973
17-03-17 17:23:43.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.828 -07 000000618 INF: FPGA: Recv ZSGSRD 36984
17-03-17 17:23:43.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.838 -07 000000502 INF: FPGA: Recv ZSGSRD 36977
17-03-17 17:23:43.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.848 -07 000000618 INF: FPGA: Recv ZSGSRD 36983
17-03-17 17:23:43.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.858 -07 000000382 INF: FPGA: Recv ZSGSRD 36981
17-03-17 17:23:43.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.868 -07 000000618 INF: FPGA: Recv ZSGSRD 36977
17-03-17 17:23:43.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.878 -07 000000382 INF: FPGA: Recv ZSGSRD 36985
17-03-17 17:23:43.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:43.888 -07 000000618 INF: FPGA: Recv ZSGSRD 36980
17-03-17 17:23:43.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.898 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:43.898 -07 000000502 INF: FPGA: Recv ZPIEZORD 32826
17-03-17 17:23:43.908 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:43.908 -07 000000431 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -9.2 V.
17-03-17 17:23:43.908 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36981 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36982 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36973 (-177.0 uncal um), Max = 36986 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:23:43.908 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36981, posNoise = 5, negNoise = 8
17-03-17 17:23:43.908 -07 000000431 INF: Z Motor: After move to -0.177881, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:43.908 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:43.908 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:43.908 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:43.908 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:43.908 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:43.908 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:43.918 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:43.918 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 17:23:43.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:43.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:43.918 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:43.928 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:23:43.928 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:43.928 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:44.128 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:44.328 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:44.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:44.328 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:44.328 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:23:44.518 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:44.518 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:44.518 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:23:44.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 594 ms.
17-03-17 17:23:44.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:44.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:44.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 599 ms.
17-03-17 17:23:45.128 -07 000000431 INF: Using center-column region for through-focus analysis: Row=512; Col=2048
17-03-17 17:23:45.128 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:45.138 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:45.148 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.60]
17-03-17 17:23:45.148 -07 000000431 INF: Scanning Z-Position: -0.17588
17-03-17 17:23:45.148 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38421, sync = True, waitForSettling = True)
17-03-17 17:23:45.148 -07 000000431 INF: Z Motor: Moving to -0.175880 mm, started at -0.177897 mm, distance = 2.02 um
17-03-17 17:23:45.148 -07 000000431 INF: FPGA: Xmit ZDACW 38421\n [Z Motor]
17-03-17 17:23:45.148 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:23:45.158 -07 000000431 INF: FPGA: 'ZDACW 38421' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:23:45.158 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:45.158 -07 000000424 INF: FPGA: Recv ZDACR 38421
17-03-17 17:23:45.168 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.168 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:45.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36670
17-03-17 17:23:45.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:45.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.328 -07 000000382 INF: FPGA: Recv ZSGSRD 36672
17-03-17 17:23:45.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.338 -07 000000569 INF: FPGA: Recv ZSGSRD 36669
17-03-17 17:23:45.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.348 -07 000000382 INF: FPGA: Recv ZSGSRD 36671
17-03-17 17:23:45.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.358 -07 000000433 INF: FPGA: Recv ZSGSRD 36668
17-03-17 17:23:45.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.368 -07 000000541 INF: FPGA: Recv ZSGSRD 36671
17-03-17 17:23:45.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36674
17-03-17 17:23:45.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.388 -07 000000502 INF: FPGA: Recv ZSGSRD 36667
17-03-17 17:23:45.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.398 -07 000000424 INF: FPGA: Recv ZSGSRD 36660
17-03-17 17:23:45.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:45.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36668
17-03-17 17:23:45.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.418 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:45.418 -07 000000433 INF: FPGA: Recv ZPIEZORD 32343
17-03-17 17:23:45.428 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:45.428 -07 000000431 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -9.5 V.
17-03-17 17:23:45.428 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36669 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36670 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36660 (-174.9 uncal um), Max = 36674 (-175.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:23:45.428 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36669, posNoise = 5, negNoise = 9
17-03-17 17:23:45.428 -07 000000431 INF: Z Motor: After move to -0.175880, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:45.428 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:23:45.428 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:45.428 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:45.428 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:45.428 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:45.438 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:45.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:45.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:23:45.438 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:45.438 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:45.438 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:45.448 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:23:45.448 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:23:45.458 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:45.648 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:45.848 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:45.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:45.848 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:45.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:46.038 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:46.048 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:46.048 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:23:46.438 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:23:46.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:46.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:46.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:23:46.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:46.648 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:46.658 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:46.668 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.24]
17-03-17 17:23:46.668 -07 000000431 INF: Scanning Z-Position: -0.17388
17-03-17 17:23:46.668 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37984, sync = True, waitForSettling = True)
17-03-17 17:23:46.668 -07 000000431 INF: Z Motor: Moving to -0.173880 mm, started at -0.175893 mm, distance = 2.01 um
17-03-17 17:23:46.668 -07 000000431 INF: FPGA: Xmit ZDACW 37984\n [Z Motor]
17-03-17 17:23:46.668 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:23:46.678 -07 000000431 INF: FPGA: 'ZDACW 37984' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:46.678 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:46.678 -07 000000382 INF: FPGA: Recv ZDACR 37984
17-03-17 17:23:46.688 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.688 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:46.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.838 -07 000000433 INF: FPGA: Recv ZSGSRD 36358
17-03-17 17:23:46.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:46.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.848 -07 000000502 INF: FPGA: Recv ZSGSRD 36362
17-03-17 17:23:46.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.858 -07 000000541 INF: FPGA: Recv ZSGSRD 36355
17-03-17 17:23:46.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.868 -07 000000541 INF: FPGA: Recv ZSGSRD 36353
17-03-17 17:23:46.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.878 -07 000000424 INF: FPGA: Recv ZSGSRD 36363
17-03-17 17:23:46.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.888 -07 000000569 INF: FPGA: Recv ZSGSRD 36355
17-03-17 17:23:46.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.898 -07 000000382 INF: FPGA: Recv ZSGSRD 36359
17-03-17 17:23:46.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.908 -07 000000382 INF: FPGA: Recv ZSGSRD 36359
17-03-17 17:23:46.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.918 -07 000000424 INF: FPGA: Recv ZSGSRD 36357
17-03-17 17:23:46.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:46.928 -07 000000502 INF: FPGA: Recv ZSGSRD 36356
17-03-17 17:23:46.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:46.938 -07 000000433 INF: FPGA: Recv ZPIEZORD 31951
17-03-17 17:23:46.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:46.948 -07 000000431 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -9.7 V.
17-03-17 17:23:46.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36358 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36358 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36353 (-173.0 uncal um), Max = 36363 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:46.948 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36358, posNoise = 5, negNoise = 5
17-03-17 17:23:46.948 -07 000000431 INF: Z Motor: After move to -0.173880, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:46.948 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:23:46.948 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:46.948 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:46.948 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:46.948 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:46.948 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:46.948 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:46.958 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:46.958 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:46.958 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:46.958 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:46.968 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:23:46.968 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:23:46.968 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:47.168 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:47.368 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:47.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:47.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:47.368 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:47.558 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:47.558 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:47.558 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:23:47.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 593 ms.
17-03-17 17:23:47.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:47.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:47.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 598 ms.
17-03-17 17:23:48.158 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:48.268 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:48.278 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.87]
17-03-17 17:23:48.278 -07 000000431 INF: Scanning Z-Position: -0.17188
17-03-17 17:23:48.278 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37547, sync = True, waitForSettling = True)
17-03-17 17:23:48.278 -07 000000431 INF: Z Motor: Moving to -0.171879 mm, started at -0.173895 mm, distance = 2.02 um
17-03-17 17:23:48.278 -07 000000431 INF: FPGA: Xmit ZDACW 37547\n [Z Motor]
17-03-17 17:23:48.288 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:23:48.288 -07 000000431 INF: FPGA: 'ZDACW 37547' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 17:23:48.288 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:48.288 -07 000000569 INF: FPGA: Recv ZDACR 37547
17-03-17 17:23:48.298 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:48.298 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:48.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.448 -07 000000429 INF: FPGA: Recv ZSGSRD 36049
17-03-17 17:23:48.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:48.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.458 -07 000000541 INF: FPGA: Recv ZSGSRD 36048
17-03-17 17:23:48.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.468 -07 000000541 INF: FPGA: Recv ZSGSRD 36049
17-03-17 17:23:48.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.478 -07 000000429 INF: FPGA: Recv ZSGSRD 36046
17-03-17 17:23:48.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.488 -07 000000541 INF: FPGA: Recv ZSGSRD 36039
17-03-17 17:23:48.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.498 -07 000000541 INF: FPGA: Recv ZSGSRD 36048
17-03-17 17:23:48.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.508 -07 000000541 INF: FPGA: Recv ZSGSRD 36049
17-03-17 17:23:48.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36046
17-03-17 17:23:48.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.528 -07 000000429 INF: FPGA: Recv ZSGSRD 36047
17-03-17 17:23:48.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:48.538 -07 000000429 INF: FPGA: Recv ZSGSRD 36050
17-03-17 17:23:48.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.548 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:48.548 -07 000000429 INF: FPGA: Recv ZPIEZORD 31544
17-03-17 17:23:48.558 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:48.558 -07 000000431 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -9.9 V.
17-03-17 17:23:48.558 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36047 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36048 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36039 (-171.0 uncal um), Max = 36050 (-171.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:23:48.558 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36047, posNoise = 3, negNoise = 8
17-03-17 17:23:48.558 -07 000000431 INF: Z Motor: After move to -0.171879, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:48.558 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:23:48.558 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:48.558 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:48.558 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:48.558 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:48.558 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:48.558 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:48.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:48.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:48.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:48.568 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:48.578 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:23:48.578 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:23:48.578 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:48.718 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.047997,
17-03-17 17:23:48.778 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:48.978 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:48.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:48.978 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:48.988 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:49.168 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:49.168 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:49.168 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 588 ms to get response, and 593 ms overall
17-03-17 17:23:49.568 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:23:49.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:49.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:49.568 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:23:49.768 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:49.778 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:49.788 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=21.19]
17-03-17 17:23:49.788 -07 000000431 INF: Scanning Z-Position: -0.16988
17-03-17 17:23:49.788 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37110, sync = True, waitForSettling = True)
17-03-17 17:23:49.788 -07 000000431 INF: Z Motor: Moving to -0.169879 mm, started at -0.171897 mm, distance = 2.02 um
17-03-17 17:23:49.788 -07 000000431 INF: FPGA: Xmit ZDACW 37110\n [Z Motor]
17-03-17 17:23:49.788 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:23:49.798 -07 000000431 INF: FPGA: 'ZDACW 37110' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:49.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:49.798 -07 000000569 INF: FPGA: Recv ZDACR 37110
17-03-17 17:23:49.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:49.808 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:49.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:49.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35735
17-03-17 17:23:49.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:49.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:49.968 -07 000000541 INF: FPGA: Recv ZSGSRD 35736
17-03-17 17:23:49.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:49.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:49.978 -07 000000429 INF: FPGA: Recv ZSGSRD 35737
17-03-17 17:23:49.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:49.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:49.988 -07 000000569 INF: FPGA: Recv ZSGSRD 35734
17-03-17 17:23:49.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:49.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:49.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:23:50.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:50.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:50.008 -07 000000569 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:23:50.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:50.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:50.018 -07 000000458 INF: FPGA: Recv ZSGSRD 35731
17-03-17 17:23:50.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:50.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:50.028 -07 000000569 INF: FPGA: Recv ZSGSRD 35731
17-03-17 17:23:50.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:50.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:50.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:23:50.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:50.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:50.048 -07 000000569 INF: FPGA: Recv ZSGSRD 35733
17-03-17 17:23:50.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:50.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:50.058 -07 000000458 INF: FPGA: Recv ZPIEZORD 31149
17-03-17 17:23:50.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:50.068 -07 000000431 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -10.1 V.
17-03-17 17:23:50.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35735 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35736 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35731 (-169.0 uncal um), Max = 35738 (-169.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:50.068 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35735, posNoise = 3, negNoise = 4
17-03-17 17:23:50.068 -07 000000431 INF: Z Motor: After move to -0.169879, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:50.068 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:23:50.068 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:50.068 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:50.068 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:50.068 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:50.068 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:50.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:50.078 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:23:50.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:50.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:50.078 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:50.088 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:50.088 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:23:50.088 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:50.288 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:50.488 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:50.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:50.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:50.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:50.678 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:50.678 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:50.678 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:23:51.088 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 593 ms.
17-03-17 17:23:51.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:51.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:51.088 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 598 ms.
17-03-17 17:23:51.278 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:51.288 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:51.298 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.48]
17-03-17 17:23:51.298 -07 000000431 INF: Scanning Z-Position: -0.16788
17-03-17 17:23:51.298 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36673, sync = True, waitForSettling = True)
17-03-17 17:23:51.298 -07 000000431 INF: Z Motor: Moving to -0.167878 mm, started at -0.169893 mm, distance = 2.01 um
17-03-17 17:23:51.298 -07 000000431 INF: FPGA: Xmit ZDACW 36673\n [Z Motor]
17-03-17 17:23:51.298 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:23:51.308 -07 000000431 INF: FPGA: 'ZDACW 36673' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:23:51.308 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:51.308 -07 000000627 INF: FPGA: Recv ZDACR 36673
17-03-17 17:23:51.318 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.318 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:51.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.468 -07 000000569 INF: FPGA: Recv ZSGSRD 35425
17-03-17 17:23:51.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:51.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.478 -07 000000438 INF: FPGA: Recv ZSGSRD 35424
17-03-17 17:23:51.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.488 -07 000000569 INF: FPGA: Recv ZSGSRD 35425
17-03-17 17:23:51.488 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:51.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:51.498 -07 000000569 INF: FPGA: Recv ZSGSRD 35425
17-03-17 17:23:51.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.508 -07 000000627 INF: FPGA: Recv ZSGSRD 35428
17-03-17 17:23:51.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.518 -07 000000569 INF: FPGA: Recv ZSGSRD 35420
17-03-17 17:23:51.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.528 -07 000000627 INF: FPGA: Recv ZSGSRD 35431
17-03-17 17:23:51.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.538 -07 000000438 INF: FPGA: Recv ZSGSRD 35429
17-03-17 17:23:51.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.548 -07 000000569 INF: FPGA: Recv ZSGSRD 35420
17-03-17 17:23:51.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:51.558 -07 000000458 INF: FPGA: Recv ZSGSRD 35424
17-03-17 17:23:51.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.568 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:51.568 -07 000000569 INF: FPGA: Recv ZPIEZORD 30743
17-03-17 17:23:51.578 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:51.578 -07 000000431 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -10.3 V.
17-03-17 17:23:51.578 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35425 (-167.0 uncal um), Error = 0.8 uncal um, Median = 35425 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35420 (-167.0 uncal um), Max = 35431 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:23:51.578 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35425, posNoise = 6, negNoise = 5
17-03-17 17:23:51.578 -07 000000431 INF: Z Motor: After move to -0.167878, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:51.578 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:23:51.578 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:51.578 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:51.578 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:51.578 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:51.578 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:51.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:51.588 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:51.588 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:51.588 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:51.588 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:51.598 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:23:51.598 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:23:51.598 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:51.798 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:51.998 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:51.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:51.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:51.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:23:52.188 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:52.188 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:52.188 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:23:52.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 594 ms.
17-03-17 17:23:52.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:52.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:52.598 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 598 ms.
17-03-17 17:23:52.788 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:52.798 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:52.808 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=21.01]
17-03-17 17:23:52.808 -07 000000431 INF: Scanning Z-Position: -0.16588
17-03-17 17:23:52.808 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36236, sync = True, waitForSettling = True)
17-03-17 17:23:52.808 -07 000000431 INF: Z Motor: Moving to -0.165878 mm, started at -0.167901 mm, distance = 2.02 um
17-03-17 17:23:52.808 -07 000000431 INF: FPGA: Xmit ZDACW 36236\n [Z Motor]
17-03-17 17:23:52.808 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:23:52.818 -07 000000431 INF: FPGA: 'ZDACW 36236' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:23:52.818 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:52.818 -07 000000627 INF: FPGA: Recv ZDACR 36236
17-03-17 17:23:52.828 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:52.828 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:52.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:52.978 -07 000000561 INF: FPGA: Recv ZSGSRD 35115
17-03-17 17:23:52.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:52.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:52.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35112
17-03-17 17:23:52.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:52.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:52.998 -07 000000382 INF: FPGA: Recv ZSGSRD 35107
17-03-17 17:23:53.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:53.008 -07 000000382 INF: FPGA: Recv ZSGSRD 35115
17-03-17 17:23:53.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:53.018 -07 000000382 INF: FPGA: Recv ZSGSRD 35116
17-03-17 17:23:53.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:53.028 -07 000000382 INF: FPGA: Recv ZSGSRD 35112
17-03-17 17:23:53.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:53.038 -07 000000458 INF: FPGA: Recv ZSGSRD 35115
17-03-17 17:23:53.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:53.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35109
17-03-17 17:23:53.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:23:53.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:53.058 -07 000000458 INF: FPGA: Recv ZSGSRD 35116
17-03-17 17:23:53.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:53.068 -07 000000458 INF: FPGA: Recv ZSGSRD 35114
17-03-17 17:23:53.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.078 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:53.078 -07 000000458 INF: FPGA: Recv ZPIEZORD 30366
17-03-17 17:23:53.088 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:53.088 -07 000000431 INF: Z Motor: Piezo is near 44.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -10.4 V.
17-03-17 17:23:53.088 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35113 (-165.0 uncal um), Error = 0.8 uncal um, Median = 35114 (-165.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35107 (-165.0 uncal um), Max = 35116 (-165.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:23:53.088 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35113, posNoise = 3, negNoise = 6
17-03-17 17:23:53.088 -07 000000431 INF: Z Motor: After move to -0.165878, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:53.088 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:23:53.088 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:53.088 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:53.088 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:53.098 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:53.098 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:53.098 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:53.098 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:53.098 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:53.098 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:53.098 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:53.118 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:53.118 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:23:53.118 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:53.318 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:53.518 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:53.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:53.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:53.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:23:53.708 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:53.708 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:53.708 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 591 ms overall
17-03-17 17:23:54.078 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.042558,
17-03-17 17:23:54.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 593 ms.
17-03-17 17:23:54.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:54.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:54.118 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 598 ms.
17-03-17 17:23:54.398 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:54.408 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:54.418 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.90]
17-03-17 17:23:54.418 -07 000000431 INF: Scanning Z-Position: -0.16388
17-03-17 17:23:54.418 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 35800, sync = True, waitForSettling = True)
17-03-17 17:23:54.418 -07 000000431 INF: Z Motor: Moving to -0.163882 mm, started at -0.165897 mm, distance = 2.01 um
17-03-17 17:23:54.418 -07 000000431 INF: FPGA: Xmit ZDACW 35800\n [Z Motor]
17-03-17 17:23:54.418 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:23:54.428 -07 000000431 INF: FPGA: 'ZDACW 35800' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:54.428 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:54.428 -07 000000438 INF: FPGA: Recv ZDACR 35800
17-03-17 17:23:54.438 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.438 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:54.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.588 -07 000000438 INF: FPGA: Recv ZSGSRD 34803
17-03-17 17:23:54.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:54.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.598 -07 000000458 INF: FPGA: Recv ZSGSRD 34807
17-03-17 17:23:54.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.608 -07 000000433 INF: FPGA: Recv ZSGSRD 34800
17-03-17 17:23:54.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.618 -07 000000618 INF: FPGA: Recv ZSGSRD 34804
17-03-17 17:23:54.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.628 -07 000000433 INF: FPGA: Recv ZSGSRD 34798
17-03-17 17:23:54.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.638 -07 000000618 INF: FPGA: Recv ZSGSRD 34801
17-03-17 17:23:54.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.648 -07 000000438 INF: FPGA: Recv ZSGSRD 34802
17-03-17 17:23:54.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.658 -07 000000618 INF: FPGA: Recv ZSGSRD 34800
17-03-17 17:23:54.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.668 -07 000000458 INF: FPGA: Recv ZSGSRD 34805
17-03-17 17:23:54.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:54.678 -07 000000502 INF: FPGA: Recv ZSGSRD 34802
17-03-17 17:23:54.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.688 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:54.688 -07 000000424 INF: FPGA: Recv ZPIEZORD 29973
17-03-17 17:23:54.698 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:54.698 -07 000000431 INF: Z Motor: Piezo is near 44.0 V (nominally 0 to 100 V), expect near 54.6 V, since DAC is at 5.463 V. Piezo Error = -10.6 V.
17-03-17 17:23:54.698 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -163.9 um, Read 10 ADC samples: Avg = 34802 (-163.0 uncal um), Error = 0.8 uncal um, Median = 34802 (-163.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34798 (-163.0 uncal um), Max = 34807 (-163.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:54.698 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34802, posNoise = 5, negNoise = 4
17-03-17 17:23:54.698 -07 000000431 INF: Z Motor: After move to -0.163882, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:54.698 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:23:54.698 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:54.698 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:54.708 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:54.708 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:54.708 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:54.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:54.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:54.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:54.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:54.708 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:54.718 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:54.718 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:23:54.728 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:54.928 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:55.128 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:55.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:55.128 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:55.128 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:55.318 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:55.318 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:55.318 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:23:55.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:23:55.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:55.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:55.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:23:55.818 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:55.828 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:55.838 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=21.04]
17-03-17 17:23:55.838 -07 000000431 INF: Scanning Z-Position: -0.16188
17-03-17 17:23:55.838 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 35363, sync = True, waitForSettling = True)
17-03-17 17:23:55.838 -07 000000431 INF: Z Motor: Moving to -0.161881 mm, started at -0.163899 mm, distance = 2.02 um
17-03-17 17:23:55.838 -07 000000431 INF: FPGA: Xmit ZDACW 35363\n [Z Motor]
17-03-17 17:23:55.838 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:23:55.848 -07 000000431 INF: FPGA: 'ZDACW 35363' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:55.848 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:55.848 -07 000000424 INF: FPGA: Recv ZDACR 35363
17-03-17 17:23:55.858 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:55.858 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:56.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.008 -07 000000502 INF: FPGA: Recv ZSGSRD 34494
17-03-17 17:23:56.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:56.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.018 -07 000000424 INF: FPGA: Recv ZSGSRD 34491
17-03-17 17:23:56.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.028 -07 000000458 INF: FPGA: Recv ZSGSRD 34483
17-03-17 17:23:56.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.038 -07 000000618 INF: FPGA: Recv ZSGSRD 34486
17-03-17 17:23:56.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.048 -07 000000438 INF: FPGA: Recv ZSGSRD 34496
17-03-17 17:23:56.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.058 -07 000000433 INF: FPGA: Recv ZSGSRD 34497
17-03-17 17:23:56.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.068 -07 000000502 INF: FPGA: Recv ZSGSRD 34488
17-03-17 17:23:56.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.078 -07 000000618 INF: FPGA: Recv ZSGSRD 34494
17-03-17 17:23:56.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.088 -07 000000458 INF: FPGA: Recv ZSGSRD 34486
17-03-17 17:23:56.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:56.098 -07 000000438 INF: FPGA: Recv ZSGSRD 34493
17-03-17 17:23:56.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.108 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:56.108 -07 000000502 INF: FPGA: Recv ZPIEZORD 29634
17-03-17 17:23:56.118 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:56.118 -07 000000431 INF: Z Motor: Piezo is near 43.3 V (nominally 0 to 100 V), expect near 54.0 V, since DAC is at 5.396 V. Piezo Error = -10.7 V.
17-03-17 17:23:56.118 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -161.9 um, Read 10 ADC samples: Avg = 34491 (-161.0 uncal um), Error = 0.8 uncal um, Median = 34492 (-161.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 34483 (-161.0 uncal um), Max = 34497 (-161.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:23:56.118 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34491, posNoise = 6, negNoise = 8
17-03-17 17:23:56.118 -07 000000431 INF: Z Motor: After move to -0.161881, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:56.118 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:23:56.118 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:56.118 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:56.118 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:56.118 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:56.128 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:56.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:56.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:56.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:56.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:56.128 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:56.138 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:56.138 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:56.138 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:56.338 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:23:56.488 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:23:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:23:57.098 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:23:57.098 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:57.098 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:57.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:23:57.098 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 940 ms to get response, and 951 ms overall
17-03-17 17:23:57.098 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:57.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:23:57.688 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 578 ms.
17-03-17 17:23:57.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:57.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:57.688 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:23:58.008 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:58.018 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:58.028 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.21]
17-03-17 17:23:58.028 -07 000000431 INF: Scanning Z-Position: -0.15988
17-03-17 17:23:58.028 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 34926, sync = True, waitForSettling = True)
17-03-17 17:23:58.028 -07 000000431 INF: Z Motor: Moving to -0.159881 mm, started at -0.161901 mm, distance = 2.02 um
17-03-17 17:23:58.028 -07 000000431 INF: FPGA: Xmit ZDACW 34926\n [Z Motor]
17-03-17 17:23:58.028 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:23:58.038 -07 000000431 INF: FPGA: 'ZDACW 34926' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:23:58.038 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:58.038 -07 000000541 INF: FPGA: Recv ZDACR 34926
17-03-17 17:23:58.048 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.048 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:58.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.198 -07 000000458 INF: FPGA: Recv ZSGSRD 34179
17-03-17 17:23:58.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:58.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.208 -07 000000541 INF: FPGA: Recv ZSGSRD 34176
17-03-17 17:23:58.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.218 -07 000000569 INF: FPGA: Recv ZSGSRD 34174
17-03-17 17:23:58.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.228 -07 000000541 INF: FPGA: Recv ZSGSRD 34175
17-03-17 17:23:58.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.238 -07 000000569 INF: FPGA: Recv ZSGSRD 34179
17-03-17 17:23:58.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.248 -07 000000424 INF: FPGA: Recv ZSGSRD 34182
17-03-17 17:23:58.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.258 -07 000000569 INF: FPGA: Recv ZSGSRD 34179
17-03-17 17:23:58.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.268 -07 000000541 INF: FPGA: Recv ZSGSRD 34176
17-03-17 17:23:58.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.278 -07 000000569 INF: FPGA: Recv ZSGSRD 34182
17-03-17 17:23:58.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:58.288 -07 000000424 INF: FPGA: Recv ZSGSRD 34176
17-03-17 17:23:58.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.298 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:58.298 -07 000000458 INF: FPGA: Recv ZPIEZORD 29325
17-03-17 17:23:58.308 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:58.308 -07 000000431 INF: Z Motor: Piezo is near 42.6 V (nominally 0 to 100 V), expect near 53.3 V, since DAC is at 5.329 V. Piezo Error = -10.6 V.
17-03-17 17:23:58.308 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -159.9 um, Read 10 ADC samples: Avg = 34178 (-159.0 uncal um), Error = 0.8 uncal um, Median = 34178 (-159.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 34174 (-159.0 uncal um), Max = 34182 (-159.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:23:58.308 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34178, posNoise = 4, negNoise = 4
17-03-17 17:23:58.308 -07 000000431 INF: Z Motor: After move to -0.159881, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:58.308 -07 000000431 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:23:58.308 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:58.308 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:58.308 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:58.318 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:58.318 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:58.318 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:58.318 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:23:58.318 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:58.318 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:23:58.318 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:58.328 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:58.328 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:58.328 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:23:58.528 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-17 17:23:58.728 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 393
17-03-17 17:23:58.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 393
17-03-17 17:23:58.728 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:23:58.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:23:58.918 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:23:58.918 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:23:58.918 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:23:59.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:23:59.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:23:59.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:23:59.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:23:59.438 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.050752,
17-03-17 17:23:59.518 -07 000000431 INF: ComputeBrenner start
17-03-17 17:23:59.528 -07 000000431 INF: Image SNR check: start
17-03-17 17:23:59.538 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.30]
17-03-17 17:23:59.538 -07 000000431 INF: Scanning Z-Position: -0.15788
17-03-17 17:23:59.538 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 34489, sync = True, waitForSettling = True)
17-03-17 17:23:59.538 -07 000000431 INF: Z Motor: Moving to -0.157881 mm, started at -0.159890 mm, distance = 2.01 um
17-03-17 17:23:59.538 -07 000000431 INF: FPGA: Xmit ZDACW 34489\n [Z Motor]
17-03-17 17:23:59.538 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:23:59.548 -07 000000431 INF: FPGA: 'ZDACW 34489' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:23:59.548 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:23:59.548 -07 000000458 INF: FPGA: Recv ZDACR 34489
17-03-17 17:23:59.558 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.558 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:23:59.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.708 -07 000000502 INF: FPGA: Recv ZSGSRD 33859
17-03-17 17:23:59.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:23:59.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.718 -07 000000632 INF: FPGA: Recv ZSGSRD 33867
17-03-17 17:23:59.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.728 -07 000000480 INF: FPGA: Recv ZSGSRD 33866
17-03-17 17:23:59.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.738 -07 000000458 INF: FPGA: Recv ZSGSRD 33869
17-03-17 17:23:59.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.748 -07 000000502 INF: FPGA: Recv ZSGSRD 33870
17-03-17 17:23:59.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.758 -07 000000569 INF: FPGA: Recv ZSGSRD 33864
17-03-17 17:23:59.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.768 -07 000000438 INF: FPGA: Recv ZSGSRD 33866
17-03-17 17:23:59.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.778 -07 000000458 INF: FPGA: Recv ZSGSRD 33868
17-03-17 17:23:59.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.788 -07 000000480 INF: FPGA: Recv ZSGSRD 33861
17-03-17 17:23:59.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:23:59.798 -07 000000569 INF: FPGA: Recv ZSGSRD 33864
17-03-17 17:23:59.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.808 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:23:59.808 -07 000000541 INF: FPGA: Recv ZPIEZORD 29021
17-03-17 17:23:59.818 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:23:59.818 -07 000000431 INF: Z Motor: Piezo is near 42.0 V (nominally 0 to 100 V), expect near 52.6 V, since DAC is at 5.263 V. Piezo Error = -10.6 V.
17-03-17 17:23:59.818 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -157.9 um, Read 10 ADC samples: Avg = 33865 (-157.0 uncal um), Error = 0.8 uncal um, Median = 33866 (-157.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 33859 (-157.0 uncal um), Max = 33870 (-157.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:23:59.818 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33865, posNoise = 5, negNoise = 6
17-03-17 17:23:59.818 -07 000000431 INF: Z Motor: After move to -0.157881, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:23:59.818 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:23:59.818 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:23:59.818 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:23:59.818 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:23:59.818 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:23:59.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:23:59.828 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:23:59.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:23:59.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:23:59.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:23:59.828 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:23:59.838 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:23:59.838 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:23:59.838 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:00.038 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:00.238 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:00.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:00.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:00.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:00.428 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:00.428 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:00.428 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 590 ms overall
17-03-17 17:24:00.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 591 ms.
17-03-17 17:24:00.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:00.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:00.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-17 17:24:01.028 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:01.038 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:01.048 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=19.62]
17-03-17 17:24:01.048 -07 000000431 INF: Scanning Z-Position: -0.15588
17-03-17 17:24:01.048 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 34052, sync = True, waitForSettling = True)
17-03-17 17:24:01.048 -07 000000431 INF: Z Motor: Moving to -0.155880 mm, started at -0.157879 mm, distance = 2.00 um
17-03-17 17:24:01.048 -07 000000431 INF: FPGA: Xmit ZDACW 34052\n [Z Motor]
17-03-17 17:24:01.048 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:24:01.058 -07 000000431 INF: FPGA: 'ZDACW 34052' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:01.058 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:01.058 -07 000000458 INF: FPGA: Recv ZDACR 34052
17-03-17 17:24:01.068 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.068 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:01.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.218 -07 000000502 INF: FPGA: Recv ZSGSRD 33555
17-03-17 17:24:01.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:01.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.228 -07 000000458 INF: FPGA: Recv ZSGSRD 33562
17-03-17 17:24:01.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.238 -07 000000541 INF: FPGA: Recv ZSGSRD 33551
17-03-17 17:24:01.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.248 -07 000000569 INF: FPGA: Recv ZSGSRD 33552
17-03-17 17:24:01.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.268 -07 000000480 INF: FPGA: Recv ZSGSRD 33561
17-03-17 17:24:01.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:24:01.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.278 -07 000000458 INF: FPGA: Recv ZSGSRD 33555
17-03-17 17:24:01.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.288 -07 000000541 INF: FPGA: Recv ZSGSRD 33553
17-03-17 17:24:01.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.298 -07 000000458 INF: FPGA: Recv ZSGSRD 33555
17-03-17 17:24:01.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.308 -07 000000429 INF: FPGA: Recv ZSGSRD 33559
17-03-17 17:24:01.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:01.318 -07 000000632 INF: FPGA: Recv ZSGSRD 33554
17-03-17 17:24:01.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.328 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:01.328 -07 000000480 INF: FPGA: Recv ZPIEZORD 28681
17-03-17 17:24:01.338 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:01.338 -07 000000431 INF: Z Motor: Piezo is near 41.3 V (nominally 0 to 100 V), expect near 52.0 V, since DAC is at 5.196 V. Piezo Error = -10.7 V.
17-03-17 17:24:01.338 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -155.9 um, Read 10 ADC samples: Avg = 33556 (-155.1 uncal um), Error = 0.8 uncal um, Median = 33555 (-155.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 33551 (-155.0 uncal um), Max = 33562 (-155.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:01.338 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33556, posNoise = 6, negNoise = 5
17-03-17 17:24:01.338 -07 000000431 INF: Z Motor: After move to -0.155880, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:01.338 -07 000000431 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 17:24:01.338 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:01.338 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:01.338 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:01.338 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:01.338 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:01.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:01.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:01.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:01.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:01.348 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:01.358 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 7 ms.
17-03-17 17:24:01.358 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 11 ms.
17-03-17 17:24:01.358 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:01.488 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:01.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:01.558 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:01.758 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:01.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:01.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:01.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:24:01.948 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:01.948 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:01.948 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:24:02.348 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:24:02.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:02.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:02.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:24:02.548 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:02.558 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:02.568 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.75]
17-03-17 17:24:02.568 -07 000000431 INF: Scanning Z-Position: -0.15388
17-03-17 17:24:02.568 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 33615, sync = True, waitForSettling = True)
17-03-17 17:24:02.568 -07 000000431 INF: Z Motor: Moving to -0.153880 mm, started at -0.155894 mm, distance = 2.01 um
17-03-17 17:24:02.568 -07 000000431 INF: FPGA: Xmit ZDACW 33615\n [Z Motor]
17-03-17 17:24:02.568 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:24:02.578 -07 000000431 INF: FPGA: 'ZDACW 33615' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:24:02.578 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:02.578 -07 000000438 INF: FPGA: Recv ZDACR 33615
17-03-17 17:24:02.588 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.588 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:02.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.738 -07 000000569 INF: FPGA: Recv ZSGSRD 33243
17-03-17 17:24:02.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:02.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.748 -07 000000458 INF: FPGA: Recv ZSGSRD 33247
17-03-17 17:24:02.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.758 -07 000000569 INF: FPGA: Recv ZSGSRD 33249
17-03-17 17:24:02.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:24:02.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.768 -07 000000480 INF: FPGA: Recv ZSGSRD 33244
17-03-17 17:24:02.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.778 -07 000000458 INF: FPGA: Recv ZSGSRD 33241
17-03-17 17:24:02.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.788 -07 000000632 INF: FPGA: Recv ZSGSRD 33244
17-03-17 17:24:02.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.798 -07 000000541 INF: FPGA: Recv ZSGSRD 33247
17-03-17 17:24:02.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.808 -07 000000502 INF: FPGA: Recv ZSGSRD 33244
17-03-17 17:24:02.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.818 -07 000000438 INF: FPGA: Recv ZSGSRD 33246
17-03-17 17:24:02.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:02.828 -07 000000429 INF: FPGA: Recv ZSGSRD 33242
17-03-17 17:24:02.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.838 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:02.838 -07 000000541 INF: FPGA: Recv ZPIEZORD 28347
17-03-17 17:24:02.848 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:02.848 -07 000000431 INF: Z Motor: Piezo is near 40.6 V (nominally 0 to 100 V), expect near 51.3 V, since DAC is at 5.129 V. Piezo Error = -10.7 V.
17-03-17 17:24:02.848 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -153.9 um, Read 10 ADC samples: Avg = 33245 (-153.1 uncal um), Error = 0.8 uncal um, Median = 33244 (-153.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 33241 (-153.0 uncal um), Max = 33249 (-153.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:24:02.848 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33245, posNoise = 4, negNoise = 4
17-03-17 17:24:02.848 -07 000000431 INF: Z Motor: After move to -0.153880, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:02.848 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:24:02.848 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:02.848 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:02.848 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:02.848 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:02.848 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:02.848 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:02.858 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:24:02.858 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:02.858 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:02.858 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:02.868 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:24:02.868 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:24:02.868 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:03.068 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:03.268 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:03.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:03.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:03.268 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:24:03.458 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:03.458 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:03.458 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:24:03.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:24:03.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:03.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:03.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:24:04.168 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:04.178 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:04.188 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.28]
17-03-17 17:24:04.188 -07 000000431 INF: Scanning Z-Position: -0.15188
17-03-17 17:24:04.188 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 33178, sync = True, waitForSettling = True)
17-03-17 17:24:04.188 -07 000000431 INF: Z Motor: Moving to -0.151879 mm, started at -0.153896 mm, distance = 2.02 um
17-03-17 17:24:04.188 -07 000000431 INF: FPGA: Xmit ZDACW 33178\n [Z Motor]
17-03-17 17:24:04.188 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:24:04.198 -07 000000431 INF: FPGA: 'ZDACW 33178' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:24:04.198 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:04.198 -07 000000502 INF: FPGA: Recv ZDACR 33178
17-03-17 17:24:04.208 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.208 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:04.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.358 -07 000000438 INF: FPGA: Recv ZSGSRD 32935
17-03-17 17:24:04.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:04.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.368 -07 000000502 INF: FPGA: Recv ZSGSRD 32936
17-03-17 17:24:04.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.378 -07 000000480 INF: FPGA: Recv ZSGSRD 32931
17-03-17 17:24:04.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.388 -07 000000458 INF: FPGA: Recv ZSGSRD 32932
17-03-17 17:24:04.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.398 -07 000000480 INF: FPGA: Recv ZSGSRD 32930
17-03-17 17:24:04.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.408 -07 000000458 INF: FPGA: Recv ZSGSRD 32939
17-03-17 17:24:04.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.418 -07 000000480 INF: FPGA: Recv ZSGSRD 32933
17-03-17 17:24:04.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.428 -07 000000458 INF: FPGA: Recv ZSGSRD 32928
17-03-17 17:24:04.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.438 -07 000000458 INF: FPGA: Recv ZSGSRD 32933
17-03-17 17:24:04.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:04.448 -07 000000458 INF: FPGA: Recv ZSGSRD 32933
17-03-17 17:24:04.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.458 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:04.458 -07 000000458 INF: FPGA: Recv ZPIEZORD 28048
17-03-17 17:24:04.468 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:04.468 -07 000000431 INF: Z Motor: Piezo is near 39.9 V (nominally 0 to 100 V), expect near 50.6 V, since DAC is at 5.063 V. Piezo Error = -10.7 V.
17-03-17 17:24:04.468 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -151.9 um, Read 10 ADC samples: Avg = 32933 (-151.1 uncal um), Error = 0.8 uncal um, Median = 32933 (-151.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 32928 (-151.0 uncal um), Max = 32939 (-151.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:04.468 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32933, posNoise = 6, negNoise = 5
17-03-17 17:24:04.468 -07 000000431 INF: Z Motor: After move to -0.151879, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:04.468 -07 000000431 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:24:04.468 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:04.468 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:04.468 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:04.478 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:04.478 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:04.478 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:04.478 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:04.478 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:04.478 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:04.478 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:04.488 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-17 17:24:04.488 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 11 ms.
17-03-17 17:24:04.508 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:04.698 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:04.798 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.031682,
17-03-17 17:24:04.898 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:04.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:04.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:04.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:05.088 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:05.088 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:05.098 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 603 ms overall
17-03-17 17:24:05.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:24:05.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:05.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:05.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:24:05.698 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:05.708 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:05.718 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=19.98]
17-03-17 17:24:05.718 -07 000000431 INF: Scanning Z-Position: -0.14988
17-03-17 17:24:05.718 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32741, sync = True, waitForSettling = True)
17-03-17 17:24:05.718 -07 000000431 INF: Z Motor: Moving to -0.149879 mm, started at -0.151892 mm, distance = 2.01 um
17-03-17 17:24:05.718 -07 000000431 INF: FPGA: Xmit ZDACW 32741\n [Z Motor]
17-03-17 17:24:05.718 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:24:05.728 -07 000000431 INF: FPGA: 'ZDACW 32741' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:24:05.728 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:05.728 -07 000000458 INF: FPGA: Recv ZDACR 32741
17-03-17 17:24:05.738 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.738 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:05.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.888 -07 000000502 INF: FPGA: Recv ZSGSRD 32615
17-03-17 17:24:05.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:05.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.898 -07 000000458 INF: FPGA: Recv ZSGSRD 32624
17-03-17 17:24:05.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.908 -07 000000627 INF: FPGA: Recv ZSGSRD 32622
17-03-17 17:24:05.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.918 -07 000000458 INF: FPGA: Recv ZSGSRD 32623
17-03-17 17:24:05.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.928 -07 000000480 INF: FPGA: Recv ZSGSRD 32616
17-03-17 17:24:05.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.938 -07 000000561 INF: FPGA: Recv ZSGSRD 32620
17-03-17 17:24:05.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.948 -07 000000627 INF: FPGA: Recv ZSGSRD 32631
17-03-17 17:24:05.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.958 -07 000000458 INF: FPGA: Recv ZSGSRD 32614
17-03-17 17:24:05.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.968 -07 000000480 INF: FPGA: Recv ZSGSRD 32617
17-03-17 17:24:05.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:05.978 -07 000000627 INF: FPGA: Recv ZSGSRD 32620
17-03-17 17:24:05.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.988 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:05.988 -07 000000480 INF: FPGA: Recv ZPIEZORD 27743
17-03-17 17:24:05.998 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:05.998 -07 000000431 INF: Z Motor: Piezo is near 39.3 V (nominally 0 to 100 V), expect near 50.0 V, since DAC is at 4.996 V. Piezo Error = -10.7 V.
17-03-17 17:24:05.998 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -149.9 um, Read 10 ADC samples: Avg = 32620 (-149.1 uncal um), Error = 0.8 uncal um, Median = 32620 (-149.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 32614 (-149.0 uncal um), Max = 32631 (-149.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:05.998 -07 000000431 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32620, posNoise = 11, negNoise = 6
17-03-17 17:24:05.998 -07 000000431 INF: Z Motor: After move to -0.149879, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:05.998 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:05.998 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:05.998 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:05.998 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:05.998 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:06.008 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:06.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:06.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:06.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:06.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:06.008 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:06.018 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:06.018 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:24:06.018 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:06.218 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:06.418 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:06.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:06.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:06.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:06.498 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:06.608 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:06.608 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:06.608 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:24:07.008 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 579 ms.
17-03-17 17:24:07.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:07.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:07.018 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:24:07.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:07.348 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:07.358 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:07.368 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.63]
17-03-17 17:24:07.368 -07 000000431 INF: Scanning Z-Position: -0.14788
17-03-17 17:24:07.368 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32304, sync = True, waitForSettling = True)
17-03-17 17:24:07.368 -07 000000431 INF: Z Motor: Moving to -0.147878 mm, started at -0.149881 mm, distance = 2.00 um
17-03-17 17:24:07.368 -07 000000431 INF: FPGA: Xmit ZDACW 32304\n [Z Motor]
17-03-17 17:24:07.368 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:24:07.378 -07 000000431 INF: FPGA: 'ZDACW 32304' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:07.378 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:07.378 -07 000000502 INF: FPGA: Recv ZDACR 32304
17-03-17 17:24:07.388 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.388 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:07.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.538 -07 000000632 INF: FPGA: Recv ZSGSRD 32307
17-03-17 17:24:07.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:07.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.548 -07 000000502 INF: FPGA: Recv ZSGSRD 32308
17-03-17 17:24:07.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.558 -07 000000424 INF: FPGA: Recv ZSGSRD 32316
17-03-17 17:24:07.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.568 -07 000000424 INF: FPGA: Recv ZSGSRD 32314
17-03-17 17:24:07.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.578 -07 000000632 INF: FPGA: Recv ZSGSRD 32309
17-03-17 17:24:07.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.588 -07 000000561 INF: FPGA: Recv ZSGSRD 32302
17-03-17 17:24:07.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.598 -07 000000433 INF: FPGA: Recv ZSGSRD 32307
17-03-17 17:24:07.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.608 -07 000000627 INF: FPGA: Recv ZSGSRD 32315
17-03-17 17:24:07.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.618 -07 000000561 INF: FPGA: Recv ZSGSRD 32308
17-03-17 17:24:07.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:07.628 -07 000000502 INF: FPGA: Recv ZSGSRD 32307
17-03-17 17:24:07.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.638 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:07.638 -07 000000458 INF: FPGA: Recv ZPIEZORD 27409
17-03-17 17:24:07.648 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:07.648 -07 000000431 INF: Z Motor: Piezo is near 38.6 V (nominally 0 to 100 V), expect near 49.3 V, since DAC is at 4.929 V. Piezo Error = -10.7 V.
17-03-17 17:24:07.648 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -147.9 um, Read 10 ADC samples: Avg = 32309 (-147.1 uncal um), Error = 0.8 uncal um, Median = 32308 (-147.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 32302 (-147.0 uncal um), Max = 32316 (-147.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:24:07.648 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32309, posNoise = 7, negNoise = 7
17-03-17 17:24:07.648 -07 000000431 INF: Z Motor: After move to -0.147878, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:07.648 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:24:07.648 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:07.648 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:07.648 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:07.648 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:07.648 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:07.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:07.658 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:07.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:07.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:07.658 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:07.668 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:24:07.668 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:24:07.668 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:07.868 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:08.068 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:08.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:08.068 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:08.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:08.258 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:08.258 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:08.258 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:24:08.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:24:08.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:08.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:08.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:08.858 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:08.868 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:08.878 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=21.16]
17-03-17 17:24:08.878 -07 000000431 INF: Scanning Z-Position: -0.14588
17-03-17 17:24:08.878 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31867, sync = True, waitForSettling = True)
17-03-17 17:24:08.878 -07 000000431 INF: Z Motor: Moving to -0.145878 mm, started at -0.147883 mm, distance = 2.01 um
17-03-17 17:24:08.878 -07 000000431 INF: FPGA: Xmit ZDACW 31867\n [Z Motor]
17-03-17 17:24:08.878 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:24:08.888 -07 000000431 INF: FPGA: 'ZDACW 31867' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:24:08.888 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:08.888 -07 000000458 INF: FPGA: Recv ZDACR 31867
17-03-17 17:24:08.898 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:08.898 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:09.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.048 -07 000000433 INF: FPGA: Recv ZSGSRD 31999
17-03-17 17:24:09.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:09.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.058 -07 000000627 INF: FPGA: Recv ZSGSRD 32002
17-03-17 17:24:09.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.068 -07 000000627 INF: FPGA: Recv ZSGSRD 31994
17-03-17 17:24:09.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.078 -07 000000627 INF: FPGA: Recv ZSGSRD 31997
17-03-17 17:24:09.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:24:09.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.088 -07 000000627 INF: FPGA: Recv ZSGSRD 32000
17-03-17 17:24:09.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.098 -07 000000627 INF: FPGA: Recv ZSGSRD 31997
17-03-17 17:24:09.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.108 -07 000000627 INF: FPGA: Recv ZSGSRD 31999
17-03-17 17:24:09.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.118 -07 000000627 INF: FPGA: Recv ZSGSRD 31999
17-03-17 17:24:09.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.128 -07 000000627 INF: FPGA: Recv ZSGSRD 32001
17-03-17 17:24:09.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:09.138 -07 000000627 INF: FPGA: Recv ZSGSRD 31998
17-03-17 17:24:09.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.148 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:09.148 -07 000000627 INF: FPGA: Recv ZPIEZORD 27120
17-03-17 17:24:09.158 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:09.158 -07 000000431 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 48.6 V, since DAC is at 4.863 V. Piezo Error = -10.7 V.
17-03-17 17:24:09.158 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -145.9 um, Read 10 ADC samples: Avg = 31999 (-145.1 uncal um), Error = 0.8 uncal um, Median = 31999 (-145.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31994 (-145.0 uncal um), Max = 32002 (-145.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:09.158 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31999, posNoise = 3, negNoise = 5
17-03-17 17:24:09.158 -07 000000431 INF: Z Motor: After move to -0.145878, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:09.158 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:09.158 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:09.158 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:09.158 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:09.168 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:09.168 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:09.168 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:09.168 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:09.168 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:09.168 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:09.168 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:09.188 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:09.188 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:09.188 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:09.388 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:09.588 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:09.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:09.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:09.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:09.778 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:09.778 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:09.778 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 591 ms overall
17-03-17 17:24:10.168 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.030322,
17-03-17 17:24:10.178 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:24:10.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:10.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:24:10.178 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-17 17:24:10.278 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:10.288 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:10.298 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=22.18]
17-03-17 17:24:10.298 -07 000000431 INF: Scanning Z-Position: -0.14388
17-03-17 17:24:10.298 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31431, sync = True, waitForSettling = True)
17-03-17 17:24:10.298 -07 000000431 INF: Z Motor: Moving to -0.143882 mm, started at -0.145892 mm, distance = 2.01 um
17-03-17 17:24:10.298 -07 000000431 INF: FPGA: Xmit ZDACW 31431\n [Z Motor]
17-03-17 17:24:10.298 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:24:10.308 -07 000000431 INF: FPGA: 'ZDACW 31431' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:10.308 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:10.308 -07 000000438 INF: FPGA: Recv ZDACR 31431
17-03-17 17:24:10.318 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.318 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:10.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.468 -07 000000569 INF: FPGA: Recv ZSGSRD 31688
17-03-17 17:24:10.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:10.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.478 -07 000000627 INF: FPGA: Recv ZSGSRD 31689
17-03-17 17:24:10.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.488 -07 000000569 INF: FPGA: Recv ZSGSRD 31684
17-03-17 17:24:10.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.498 -07 000000438 INF: FPGA: Recv ZSGSRD 31687
17-03-17 17:24:10.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.508 -07 000000569 INF: FPGA: Recv ZSGSRD 31689
17-03-17 17:24:10.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.518 -07 000000438 INF: FPGA: Recv ZSGSRD 31689
17-03-17 17:24:10.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.528 -07 000000382 INF: FPGA: Recv ZSGSRD 31685
17-03-17 17:24:10.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.538 -07 000000627 INF: FPGA: Recv ZSGSRD 31688
17-03-17 17:24:10.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:10.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.548 -07 000000382 INF: FPGA: Recv ZSGSRD 31690
17-03-17 17:24:10.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:10.558 -07 000000438 INF: FPGA: Recv ZSGSRD 31687
17-03-17 17:24:10.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.568 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:10.568 -07 000000569 INF: FPGA: Recv ZPIEZORD 26813
17-03-17 17:24:10.578 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:10.578 -07 000000431 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 48.0 V, since DAC is at 4.796 V. Piezo Error = -10.7 V.
17-03-17 17:24:10.578 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -143.9 um, Read 10 ADC samples: Avg = 31688 (-143.1 uncal um), Error = 0.8 uncal um, Median = 31688 (-143.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31684 (-143.1 uncal um), Max = 31690 (-143.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:24:10.578 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31688, posNoise = 2, negNoise = 4
17-03-17 17:24:10.578 -07 000000431 INF: Z Motor: After move to -0.143882, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:10.578 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:10.578 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:10.578 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:10.578 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:10.578 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:10.578 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:10.578 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:10.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:10.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:10.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:10.588 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:10.598 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:24:10.598 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:24:10.598 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:10.798 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:10.998 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:10.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:10.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:10.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:24:11.188 -07 000000382 INF: FPGA: Recv @CAMSNAP 586
17-03-17 17:24:11.198 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:11.198 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 590 ms overall
17-03-17 17:24:11.498 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:11.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:24:11.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:11.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:11.598 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:24:11.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:11.798 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:11.808 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:11.818 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=23.78]
17-03-17 17:24:11.818 -07 000000431 INF: Scanning Z-Position: -0.14188
17-03-17 17:24:11.818 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30994, sync = True, waitForSettling = True)
17-03-17 17:24:11.818 -07 000000431 INF: Z Motor: Moving to -0.141881 mm, started at -0.143894 mm, distance = 2.01 um
17-03-17 17:24:11.818 -07 000000431 INF: FPGA: Xmit ZDACW 30994\n [Z Motor]
17-03-17 17:24:11.818 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:24:11.828 -07 000000431 INF: FPGA: 'ZDACW 30994' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:24:11.828 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:11.828 -07 000000382 INF: FPGA: Recv ZDACR 30994
17-03-17 17:24:11.838 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:11.838 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:11.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:11.988 -07 000000541 INF: FPGA: Recv ZSGSRD 31373
17-03-17 17:24:11.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:11.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:11.998 -07 000000429 INF: FPGA: Recv ZSGSRD 31377
17-03-17 17:24:12.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.008 -07 000000541 INF: FPGA: Recv ZSGSRD 31381
17-03-17 17:24:12.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.018 -07 000000438 INF: FPGA: Recv ZSGSRD 31376
17-03-17 17:24:12.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.028 -07 000000569 INF: FPGA: Recv ZSGSRD 31371
17-03-17 17:24:12.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.758 -07 000000541 INF: FPGA: Recv ZSGSRD 31378
17-03-17 17:24:12.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 710 ms to get response, and 720 ms overall
17-03-17 17:24:12.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.758 -07 000000541 INF: FPGA: Recv ZSGSRD 31382
17-03-17 17:24:12.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.768 -07 000000541 INF: FPGA: Recv ZSGSRD 31375
17-03-17 17:24:12.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.778 -07 000000458 INF: FPGA: Recv ZSGSRD 31378
17-03-17 17:24:12.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:12.788 -07 000000569 INF: FPGA: Recv ZSGSRD 31375
17-03-17 17:24:12.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.798 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:12.798 -07 000000569 INF: FPGA: Recv ZPIEZORD 26576
17-03-17 17:24:12.808 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:12.808 -07 000000431 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 47.3 V, since DAC is at 4.729 V. Piezo Error = -10.5 V.
17-03-17 17:24:12.808 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -141.9 um, Read 10 ADC samples: Avg = 31377 (-141.1 uncal um), Error = 0.8 uncal um, Median = 31376 (-141.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31371 (-141.1 uncal um), Max = 31382 (-141.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:12.808 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31377, posNoise = 5, negNoise = 6
17-03-17 17:24:12.808 -07 000000431 INF: Z Motor: After move to -0.141881, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:12.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 984 ms)
17-03-17 17:24:12.808 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:12.808 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:12.808 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:12.808 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:12.808 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:12.808 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:12.808 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:12.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:12.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:12.818 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:12.828 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:24:12.828 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:24:12.828 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:13.028 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:13.228 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:13.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:13.228 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:13.228 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:24:13.418 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:13.418 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:13.418 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 592 ms overall
17-03-17 17:24:13.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 592 ms.
17-03-17 17:24:13.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:13.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:13.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:24:14.128 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:14.138 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:14.148 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=25.51]
17-03-17 17:24:14.148 -07 000000431 INF: Scanning Z-Position: -0.13988
17-03-17 17:24:14.148 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30557, sync = True, waitForSettling = True)
17-03-17 17:24:14.148 -07 000000431 INF: Z Motor: Moving to -0.139881 mm, started at -0.141896 mm, distance = 2.01 um
17-03-17 17:24:14.148 -07 000000431 INF: FPGA: Xmit ZDACW 30557\n [Z Motor]
17-03-17 17:24:14.148 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:24:14.158 -07 000000431 INF: FPGA: 'ZDACW 30557' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:24:14.158 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:14.158 -07 000000458 INF: FPGA: Recv ZDACR 30557
17-03-17 17:24:14.168 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.168 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:14.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.318 -07 000000569 INF: FPGA: Recv ZSGSRD 31062
17-03-17 17:24:14.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:14.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.328 -07 000000382 INF: FPGA: Recv ZSGSRD 31067
17-03-17 17:24:14.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.338 -07 000000458 INF: FPGA: Recv ZSGSRD 31068
17-03-17 17:24:14.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.348 -07 000000632 INF: FPGA: Recv ZSGSRD 31067
17-03-17 17:24:14.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.358 -07 000000458 INF: FPGA: Recv ZSGSRD 31063
17-03-17 17:24:14.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.368 -07 000000458 INF: FPGA: Recv ZSGSRD 31063
17-03-17 17:24:14.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.378 -07 000000382 INF: FPGA: Recv ZSGSRD 31063
17-03-17 17:24:14.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.388 -07 000000632 INF: FPGA: Recv ZSGSRD 31065
17-03-17 17:24:14.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.398 -07 000000458 INF: FPGA: Recv ZSGSRD 31066
17-03-17 17:24:14.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:14.408 -07 000000632 INF: FPGA: Recv ZSGSRD 31066
17-03-17 17:24:14.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.418 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:14.418 -07 000000382 INF: FPGA: Recv ZPIEZORD 26226
17-03-17 17:24:14.428 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:14.428 -07 000000431 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.663 V. Piezo Error = -10.6 V.
17-03-17 17:24:14.428 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31065 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31066 (-139.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31062 (-139.1 uncal um), Max = 31068 (-139.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:24:14.428 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31065, posNoise = 3, negNoise = 3
17-03-17 17:24:14.428 -07 000000431 INF: Z Motor: After move to -0.139881, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:14.428 -07 000000431 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:24:14.428 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:14.428 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:14.428 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:14.428 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:14.428 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:14.428 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:14.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:14.438 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:14.438 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:14.438 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:14.448 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:14.448 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:14.448 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:14.648 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:14.848 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:14.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:14.848 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:14.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:15.038 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:15.038 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:15.038 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 590 ms overall
17-03-17 17:24:15.438 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 578 ms.
17-03-17 17:24:15.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:15.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:15.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:24:15.538 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.027603,
17-03-17 17:24:15.638 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:15.648 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:15.658 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=30.88]
17-03-17 17:24:15.658 -07 000000431 INF: Scanning Z-Position: -0.13788
17-03-17 17:24:15.658 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30120, sync = True, waitForSettling = True)
17-03-17 17:24:15.658 -07 000000431 INF: Z Motor: Moving to -0.137881 mm, started at -0.139892 mm, distance = 2.01 um
17-03-17 17:24:15.658 -07 000000431 INF: FPGA: Xmit ZDACW 30120\n [Z Motor]
17-03-17 17:24:15.658 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:24:15.668 -07 000000431 INF: FPGA: 'ZDACW 30120' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:15.668 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:15.668 -07 000000429 INF: FPGA: Recv ZDACR 30120
17-03-17 17:24:15.678 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.678 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:15.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.828 -07 000000458 INF: FPGA: Recv ZSGSRD 30750
17-03-17 17:24:15.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:15.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.838 -07 000000382 INF: FPGA: Recv ZSGSRD 30757
17-03-17 17:24:15.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.848 -07 000000458 INF: FPGA: Recv ZSGSRD 30752
17-03-17 17:24:15.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.858 -07 000000480 INF: FPGA: Recv ZSGSRD 30760
17-03-17 17:24:15.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.868 -07 000000632 INF: FPGA: Recv ZSGSRD 30743
17-03-17 17:24:15.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.878 -07 000000429 INF: FPGA: Recv ZSGSRD 30752
17-03-17 17:24:15.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30755
17-03-17 17:24:15.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.898 -07 000000632 INF: FPGA: Recv ZSGSRD 30750
17-03-17 17:24:15.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.908 -07 000000561 INF: FPGA: Recv ZSGSRD 30752
17-03-17 17:24:15.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:15.918 -07 000000632 INF: FPGA: Recv ZSGSRD 30748
17-03-17 17:24:15.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.928 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:15.928 -07 000000480 INF: FPGA: Recv ZPIEZORD 25962
17-03-17 17:24:15.938 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:15.938 -07 000000431 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -10.5 V.
17-03-17 17:24:15.938 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30752 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30743 (-137.0 uncal um), Max = 30760 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:24:15.938 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30752, posNoise = 8, negNoise = 9
17-03-17 17:24:15.938 -07 000000431 INF: Z Motor: After move to -0.137881, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:15.938 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:24:15.938 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:15.938 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:15.948 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:15.948 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:15.948 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:15.948 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:15.948 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:15.948 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:15.948 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:15.948 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:15.968 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:15.968 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:24:15.968 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:16.168 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:16.368 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:16.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:16.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:16.378 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:16.498 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:16.558 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:16.558 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:16.558 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:24:16.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:24:16.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:16.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:16.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 601 ms.
17-03-17 17:24:17.158 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:17.178 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:17.188 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:17.198 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=38.82]
17-03-17 17:24:17.198 -07 000000431 INF: Scanning Z-Position: -0.13588
17-03-17 17:24:17.198 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29683, sync = True, waitForSettling = True)
17-03-17 17:24:17.198 -07 000000431 INF: Z Motor: Moving to -0.135880 mm, started at -0.137881 mm, distance = 2.00 um
17-03-17 17:24:17.198 -07 000000431 INF: FPGA: Xmit ZDACW 29683\n [Z Motor]
17-03-17 17:24:17.198 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:24:17.208 -07 000000431 INF: FPGA: 'ZDACW 29683' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:24:17.208 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:17.208 -07 000000382 INF: FPGA: Recv ZDACR 29683
17-03-17 17:24:17.218 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.218 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:17.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.368 -07 000000632 INF: FPGA: Recv ZSGSRD 30441
17-03-17 17:24:17.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:17.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.378 -07 000000424 INF: FPGA: Recv ZSGSRD 30445
17-03-17 17:24:17.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.388 -07 000000561 INF: FPGA: Recv ZSGSRD 30439
17-03-17 17:24:17.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.398 -07 000000480 INF: FPGA: Recv ZSGSRD 30441
17-03-17 17:24:17.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.408 -07 000000424 INF: FPGA: Recv ZSGSRD 30442
17-03-17 17:24:17.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.418 -07 000000561 INF: FPGA: Recv ZSGSRD 30445
17-03-17 17:24:17.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30445
17-03-17 17:24:17.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.438 -07 000000480 INF: FPGA: Recv ZSGSRD 30439
17-03-17 17:24:17.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.448 -07 000000433 INF: FPGA: Recv ZSGSRD 30444
17-03-17 17:24:17.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:17.458 -07 000000424 INF: FPGA: Recv ZSGSRD 30439
17-03-17 17:24:17.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.468 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:17.468 -07 000000433 INF: FPGA: Recv ZPIEZORD 25669
17-03-17 17:24:17.478 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:17.478 -07 000000431 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -10.5 V.
17-03-17 17:24:17.478 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30442 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30442 (-135.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30439 (-135.1 uncal um), Max = 30445 (-135.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:24:17.478 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30442, posNoise = 3, negNoise = 3
17-03-17 17:24:17.478 -07 000000431 INF: Z Motor: After move to -0.135880, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:17.478 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:24:17.478 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:17.478 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:17.478 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:17.488 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:17.488 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:17.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:17.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:24:17.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:17.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:17.488 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:17.498 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:24:17.498 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:24:17.508 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:17.698 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:17.898 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:17.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:17.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:17.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:18.098 -07 000000429 INF: FPGA: Recv @CAMSNAP 587
17-03-17 17:24:18.098 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:18.098 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 591 ms overall
17-03-17 17:24:18.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:24:18.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:18.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:18.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:18.598 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:18.608 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:18.618 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=69.39]
17-03-17 17:24:18.618 -07 000000431 INF: Scanning Z-Position: -0.13388
17-03-17 17:24:18.618 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29246, sync = True, waitForSettling = True)
17-03-17 17:24:18.618 -07 000000431 INF: Z Motor: Moving to -0.133880 mm, started at -0.135889 mm, distance = 2.01 um
17-03-17 17:24:18.618 -07 000000431 INF: FPGA: Xmit ZDACW 29246\n [Z Motor]
17-03-17 17:24:18.618 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:24:18.628 -07 000000431 INF: FPGA: 'ZDACW 29246' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:18.628 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:18.628 -07 000000429 INF: FPGA: Recv ZDACR 29246
17-03-17 17:24:18.638 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:18.638 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:18.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:18.788 -07 000000429 INF: FPGA: Recv ZSGSRD 30128
17-03-17 17:24:18.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:18.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:18.798 -07 000000429 INF: FPGA: Recv ZSGSRD 30134
17-03-17 17:24:18.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:24:18.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:18.808 -07 000000429 INF: FPGA: Recv ZSGSRD 30125
17-03-17 17:24:18.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:18.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:18.818 -07 000000429 INF: FPGA: Recv ZSGSRD 30125
17-03-17 17:24:18.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:18.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:18.828 -07 000000429 INF: FPGA: Recv ZSGSRD 30131
17-03-17 17:24:18.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:18.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:19.758 -07 000000502 INF: FPGA: Recv ZSGSRD 30131
17-03-17 17:24:19.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 910 ms to get response, and 920 ms overall
17-03-17 17:24:19.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:19.758 -07 000000502 INF: FPGA: Recv ZSGSRD 30138
17-03-17 17:24:19.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:19.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:19.768 -07 000000502 INF: FPGA: Recv ZSGSRD 30132
17-03-17 17:24:19.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:19.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:19.778 -07 000000502 INF: FPGA: Recv ZSGSRD 30130
17-03-17 17:24:19.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:19.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:19.788 -07 000000502 INF: FPGA: Recv ZSGSRD 30133
17-03-17 17:24:19.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:19.798 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:19.798 -07 000000502 INF: FPGA: Recv ZPIEZORD 25413
17-03-17 17:24:19.808 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:19.808 -07 000000431 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.463 V. Piezo Error = -10.3 V.
17-03-17 17:24:19.808 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30131 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30131 (-133.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30125 (-133.1 uncal um), Max = 30138 (-133.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:19.808 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30131, posNoise = 7, negNoise = 6
17-03-17 17:24:19.808 -07 000000431 INF: Z Motor: After move to -0.133880, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:19.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 1188 ms)
17-03-17 17:24:19.808 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:19.808 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:19.808 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:19.818 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:19.818 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:19.818 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:19.818 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:19.818 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:19.828 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:19.828 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:19.838 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:19.838 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:19.838 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:20.038 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:24:20.238 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:24:20.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:24:20.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:20.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:20.428 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:20.428 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:20.428 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:24:20.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:24:20.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:20.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:20.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:20.908 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.041198,
17-03-17 17:24:21.028 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:21.038 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:21.048 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=86.13]
17-03-17 17:24:21.048 -07 000000431 INF: Scanning Z-Position: -0.13188
17-03-17 17:24:21.048 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28809, sync = True, waitForSettling = True)
17-03-17 17:24:21.048 -07 000000431 INF: Z Motor: Moving to -0.131879 mm, started at -0.133891 mm, distance = 2.01 um
17-03-17 17:24:21.048 -07 000000431 INF: FPGA: Xmit ZDACW 28809\n [Z Motor]
17-03-17 17:24:21.048 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:24:21.058 -07 000000431 INF: FPGA: 'ZDACW 28809' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:21.058 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:21.058 -07 000000627 INF: FPGA: Recv ZDACR 28809
17-03-17 17:24:21.068 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.068 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:21.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29820
17-03-17 17:24:21.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:21.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.228 -07 000000627 INF: FPGA: Recv ZSGSRD 29820
17-03-17 17:24:21.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29820
17-03-17 17:24:21.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.248 -07 000000627 INF: FPGA: Recv ZSGSRD 29818
17-03-17 17:24:21.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.258 -07 000000502 INF: FPGA: Recv ZSGSRD 29821
17-03-17 17:24:21.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.268 -07 000000627 INF: FPGA: Recv ZSGSRD 29823
17-03-17 17:24:21.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.278 -07 000000569 INF: FPGA: Recv ZSGSRD 29813
17-03-17 17:24:21.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.288 -07 000000627 INF: FPGA: Recv ZSGSRD 29821
17-03-17 17:24:21.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.298 -07 000000569 INF: FPGA: Recv ZSGSRD 29822
17-03-17 17:24:21.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:21.308 -07 000000627 INF: FPGA: Recv ZSGSRD 29815
17-03-17 17:24:21.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.318 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:21.318 -07 000000480 INF: FPGA: Recv ZPIEZORD 25076
17-03-17 17:24:21.328 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:21.328 -07 000000431 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -10.4 V.
17-03-17 17:24:21.328 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29819 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29820 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29813 (-131.1 uncal um), Max = 29823 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:21.328 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29819, posNoise = 4, negNoise = 6
17-03-17 17:24:21.328 -07 000000431 INF: Z Motor: After move to -0.131879, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:21.328 -07 000000431 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:24:21.328 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:21.328 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:21.328 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:21.328 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:21.328 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:21.328 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:21.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:21.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:21.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:21.338 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:21.348 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:21.348 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:21.358 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:21.498 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:21.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:21.548 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:21.748 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:21.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:21.748 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:21.748 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:24:21.938 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:21.938 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:21.948 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:24:22.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:24:22.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:22.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:22.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:22.448 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:22.458 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:22.468 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=56.36]
17-03-17 17:24:22.468 -07 000000431 INF: Scanning Z-Position: -0.12988
17-03-17 17:24:22.468 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28372, sync = True, waitForSettling = True)
17-03-17 17:24:22.468 -07 000000431 INF: Z Motor: Moving to -0.129879 mm, started at -0.131887 mm, distance = 2.01 um
17-03-17 17:24:22.468 -07 000000431 INF: FPGA: Xmit ZDACW 28372\n [Z Motor]
17-03-17 17:24:23.258 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:24:23.258 -07 000000431 INF: FPGA: 'ZDACW 28372' command took 0 ms to send, 780 ms to get response, and 784 ms overall
17-03-17 17:24:23.258 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:23.258 -07 000000438 INF: FPGA: Recv ZDACR 28372
17-03-17 17:24:23.268 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.268 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:23.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.418 -07 000000438 INF: FPGA: Recv ZSGSRD 29503
17-03-17 17:24:23.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:23.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.428 -07 000000561 INF: FPGA: Recv ZSGSRD 29507
17-03-17 17:24:23.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.438 -07 000000438 INF: FPGA: Recv ZSGSRD 29511
17-03-17 17:24:23.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29511
17-03-17 17:24:23.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29503
17-03-17 17:24:23.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.468 -07 000000561 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:24:23.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.478 -07 000000438 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:24:23.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.488 -07 000000438 INF: FPGA: Recv ZSGSRD 29508
17-03-17 17:24:23.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.498 -07 000000561 INF: FPGA: Recv ZSGSRD 29506
17-03-17 17:24:23.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:23.508 -07 000000438 INF: FPGA: Recv ZSGSRD 29505
17-03-17 17:24:23.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.518 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:23.518 -07 000000561 INF: FPGA: Recv ZPIEZORD 24855
17-03-17 17:24:23.528 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:23.528 -07 000000431 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -10.2 V.
17-03-17 17:24:23.528 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29507 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29508 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29503 (-129.1 uncal um), Max = 29511 (-129.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:24:23.528 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29507, posNoise = 4, negNoise = 4
17-03-17 17:24:23.528 -07 000000431 INF: Z Motor: After move to -0.129879, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:23.528 -07 000000431 INF: Z Motor: MoveAbsStepped took 1055 ms)
17-03-17 17:24:23.528 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:23.528 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:23.528 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:23.528 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:23.538 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:23.538 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:23.538 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:23.538 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:23.538 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:24:23.538 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:23.558 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:23.558 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:24:23.558 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:23.758 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:23.958 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:23.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:23.958 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:23.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:24:24.148 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:24.148 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:24.148 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall
17-03-17 17:24:24.538 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:24:24.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:24.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:24.538 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:24:24.648 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:24.658 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:24.668 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=32.57]
17-03-17 17:24:24.668 -07 000000431 INF: Scanning Z-Position: -0.12788
17-03-17 17:24:24.668 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27935, sync = True, waitForSettling = True)
17-03-17 17:24:24.668 -07 000000431 INF: Z Motor: Moving to -0.127878 mm, started at -0.129883 mm, distance = 2.00 um
17-03-17 17:24:24.668 -07 000000431 INF: FPGA: Xmit ZDACW 27935\n [Z Motor]
17-03-17 17:24:24.668 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:24:24.678 -07 000000431 INF: FPGA: 'ZDACW 27935' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:24.678 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:24.678 -07 000000561 INF: FPGA: Recv ZDACR 27935
17-03-17 17:24:24.688 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.688 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:24.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.838 -07 000000561 INF: FPGA: Recv ZSGSRD 29188
17-03-17 17:24:24.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:24.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.848 -07 000000561 INF: FPGA: Recv ZSGSRD 29194
17-03-17 17:24:24.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.858 -07 000000561 INF: FPGA: Recv ZSGSRD 29191
17-03-17 17:24:24.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.868 -07 000000561 INF: FPGA: Recv ZSGSRD 29194
17-03-17 17:24:24.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.878 -07 000000561 INF: FPGA: Recv ZSGSRD 29194
17-03-17 17:24:24.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.888 -07 000000561 INF: FPGA: Recv ZSGSRD 29206
17-03-17 17:24:24.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.898 -07 000000561 INF: FPGA: Recv ZSGSRD 29191
17-03-17 17:24:24.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.908 -07 000000433 INF: FPGA: Recv ZSGSRD 29196
17-03-17 17:24:24.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.918 -07 000000618 INF: FPGA: Recv ZSGSRD 29195
17-03-17 17:24:24.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:24.928 -07 000000433 INF: FPGA: Recv ZSGSRD 29190
17-03-17 17:24:24.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:24.938 -07 000000424 INF: FPGA: Recv ZPIEZORD 24527
17-03-17 17:24:24.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:24.948 -07 000000431 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -10.2 V.
17-03-17 17:24:24.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29194 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29194 (-127.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29188 (-127.1 uncal um), Max = 29206 (-127.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:24.948 -07 000000431 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29194, posNoise = 12, negNoise = 6
17-03-17 17:24:24.948 -07 000000431 INF: Z Motor: After move to -0.127878, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:24.948 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:24:24.948 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:24.948 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:24.948 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:24.948 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:24.948 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:24.948 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:24.958 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:24.958 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:24.958 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:24.958 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:24.968 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:24.968 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:24.978 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:25.168 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:25.368 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:25.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:25.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:25.378 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:25.568 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:25.568 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:25.568 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 589 ms overall
17-03-17 17:24:25.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:24:25.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:25.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:25.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:24:26.068 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:26.078 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:26.088 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=26.98]
17-03-17 17:24:26.088 -07 000000431 INF: Scanning Z-Position: -0.12588
17-03-17 17:24:26.088 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27498, sync = True, waitForSettling = True)
17-03-17 17:24:26.088 -07 000000431 INF: Z Motor: Moving to -0.125878 mm, started at -0.127872 mm, distance = 1.99 um
17-03-17 17:24:26.088 -07 000000431 INF: FPGA: Xmit ZDACW 27498\n [Z Motor]
17-03-17 17:24:26.088 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:24:26.098 -07 000000431 INF: FPGA: 'ZDACW 27498' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:24:26.098 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:26.098 -07 000000433 INF: FPGA: Recv ZDACR 27498
17-03-17 17:24:26.108 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:26.108 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:26.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.258 -07 000000382 INF: FPGA: Recv ZSGSRD 28882
17-03-17 17:24:26.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:26.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.278 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.042558,
17-03-17 17:24:26.278 -07 000000480 INF: FPGA: Recv ZSGSRD 28887
17-03-17 17:24:26.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:24:26.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.288 -07 000000541 INF: FPGA: Recv ZSGSRD 28882
17-03-17 17:24:26.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:26.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.318 -07 000000382 INF: FPGA: Recv ZSGSRD 28883
17-03-17 17:24:26.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:24:26.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.348 -07 000000561 INF: FPGA: Recv ZSGSRD 28884
17-03-17 17:24:26.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:24:26.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.358 -07 000000480 INF: FPGA: Recv ZSGSRD 28882
17-03-17 17:24:26.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:26.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.368 -07 000000480 INF: FPGA: Recv ZSGSRD 28885
17-03-17 17:24:26.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:26.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.378 -07 000000424 INF: FPGA: Recv ZSGSRD 28883
17-03-17 17:24:26.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:26.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.388 -07 000000424 INF: FPGA: Recv ZSGSRD 28888
17-03-17 17:24:26.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:26.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:26.398 -07 000000618 INF: FPGA: Recv ZSGSRD 28878
17-03-17 17:24:26.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:26.408 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:27.258 -07 000000458 INF: FPGA: Recv ZPIEZORD 24282
17-03-17 17:24:27.258 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:27.258 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 840 ms to get response, and 850 ms overall
17-03-17 17:24:27.258 -07 000000431 INF: Z Motor: Piezo is near 31.9 V (nominally 0 to 100 V), expect near 42.0 V, since DAC is at 4.196 V. Piezo Error = -10.1 V.
17-03-17 17:24:27.258 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -125.9 um, Read 10 ADC samples: Avg = 28883 (-125.1 uncal um), Error = 0.8 uncal um, Median = 28883 (-125.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28878 (-125.1 uncal um), Max = 28888 (-125.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:27.258 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:27.258 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28883, posNoise = 5, negNoise = 5
17-03-17 17:24:27.258 -07 000000431 INF: Z Motor: After move to -0.125878, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:27.258 -07 000000431 INF: Z Motor: MoveAbsStepped took 1169 ms)
17-03-17 17:24:27.258 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:27.258 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:27.268 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:27.268 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:27.268 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:27.268 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:27.268 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:24:27.268 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:27.268 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:27.268 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:27.278 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:27.278 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:27.288 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:27.478 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:27.678 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:27.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:27.688 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:27.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:27.868 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:27.878 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:27.878 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:24:28.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:24:28.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:28.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:28.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms.
17-03-17 17:24:28.378 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:28.388 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:28.398 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=22.78]
17-03-17 17:24:28.398 -07 000000431 INF: Scanning Z-Position: -0.12388
17-03-17 17:24:28.398 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27062, sync = True, waitForSettling = True)
17-03-17 17:24:28.398 -07 000000431 INF: Z Motor: Moving to -0.123882 mm, started at -0.125874 mm, distance = 1.99 um
17-03-17 17:24:28.398 -07 000000431 INF: FPGA: Xmit ZDACW 27062\n [Z Motor]
17-03-17 17:24:28.398 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:24:28.408 -07 000000431 INF: FPGA: 'ZDACW 27062' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:24:28.408 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:28.408 -07 000000458 INF: FPGA: Recv ZDACR 27062
17-03-17 17:24:28.418 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.418 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:28.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.568 -07 000000618 INF: FPGA: Recv ZSGSRD 28574
17-03-17 17:24:28.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:28.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.578 -07 000000382 INF: FPGA: Recv ZSGSRD 28577
17-03-17 17:24:28.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.588 -07 000000433 INF: FPGA: Recv ZSGSRD 28568
17-03-17 17:24:28.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.598 -07 000000429 INF: FPGA: Recv ZSGSRD 28571
17-03-17 17:24:28.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.608 -07 000000561 INF: FPGA: Recv ZSGSRD 28572
17-03-17 17:24:28.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.618 -07 000000480 INF: FPGA: Recv ZSGSRD 28576
17-03-17 17:24:28.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.628 -07 000000433 INF: FPGA: Recv ZSGSRD 28577
17-03-17 17:24:28.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.638 -07 000000429 INF: FPGA: Recv ZSGSRD 28575
17-03-17 17:24:28.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.648 -07 000000561 INF: FPGA: Recv ZSGSRD 28578
17-03-17 17:24:28.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:28.658 -07 000000480 INF: FPGA: Recv ZSGSRD 28570
17-03-17 17:24:28.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.668 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:28.668 -07 000000569 INF: FPGA: Recv ZPIEZORD 24036
17-03-17 17:24:28.678 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:28.678 -07 000000431 INF: Z Motor: Piezo is near 31.3 V (nominally 0 to 100 V), expect near 41.3 V, since DAC is at 4.129 V. Piezo Error = -9.9 V.
17-03-17 17:24:28.678 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -123.9 um, Read 10 ADC samples: Avg = 28574 (-123.1 uncal um), Error = 0.8 uncal um, Median = 28574 (-123.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28568 (-123.1 uncal um), Max = 28578 (-123.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:28.678 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28574, posNoise = 4, negNoise = 6
17-03-17 17:24:28.678 -07 000000431 INF: Z Motor: After move to -0.123882, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:28.678 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:28.678 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:28.678 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:28.678 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:28.678 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:28.678 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:28.678 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:28.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:24:28.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:28.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:28.688 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:28.698 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:24:28.698 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms.
17-03-17 17:24:28.698 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:28.898 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 196
17-03-17 17:24:29.098 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 396
17-03-17 17:24:29.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 396
17-03-17 17:24:29.098 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:29.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:24:29.288 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:29.288 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:29.288 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:24:29.688 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:24:29.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:29.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:29.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:24:29.788 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:29.798 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:29.808 -07 000000431 INF: Image SNR check: image is Faint  [peak (Max-Min)=20.91]
17-03-17 17:24:29.808 -07 000000431 INF: Scanning Z-Position: -0.12188
17-03-17 17:24:29.808 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 26625, sync = True, waitForSettling = True)
17-03-17 17:24:29.808 -07 000000431 INF: Z Motor: Moving to -0.121881 mm, started at -0.123889 mm, distance = 2.01 um
17-03-17 17:24:29.808 -07 000000431 INF: FPGA: Xmit ZDACW 26625\n [Z Motor]
17-03-17 17:24:29.818 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:24:29.828 -07 000000431 INF: FPGA: 'ZDACW 26625' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:29.828 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:29.828 -07 000000429 INF: FPGA: Recv ZDACR 26625
17-03-17 17:24:29.838 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:29.838 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:29.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:29.988 -07 000000480 INF: FPGA: Recv ZSGSRD 28265
17-03-17 17:24:29.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:29.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:29.998 -07 000000569 INF: FPGA: Recv ZSGSRD 28260
17-03-17 17:24:30.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.008 -07 000000433 INF: FPGA: Recv ZSGSRD 28256
17-03-17 17:24:30.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.018 -07 000000429 INF: FPGA: Recv ZSGSRD 28258
17-03-17 17:24:30.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.028 -07 000000618 INF: FPGA: Recv ZSGSRD 28265
17-03-17 17:24:30.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.038 -07 000000458 INF: FPGA: Recv ZSGSRD 28259
17-03-17 17:24:30.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.048 -07 000000382 INF: FPGA: Recv ZSGSRD 28262
17-03-17 17:24:30.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.058 -07 000000561 INF: FPGA: Recv ZSGSRD 28263
17-03-17 17:24:30.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.068 -07 000000382 INF: FPGA: Recv ZSGSRD 28264
17-03-17 17:24:30.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:30.078 -07 000000561 INF: FPGA: Recv ZSGSRD 28262
17-03-17 17:24:30.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.088 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:30.088 -07 000000382 INF: FPGA: Recv ZPIEZORD 23778
17-03-17 17:24:30.098 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:30.098 -07 000000431 INF: Z Motor: Piezo is near 30.8 V (nominally 0 to 100 V), expect near 40.6 V, since DAC is at 4.063 V. Piezo Error = -9.8 V.
17-03-17 17:24:30.098 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -121.9 um, Read 10 ADC samples: Avg = 28261 (-121.1 uncal um), Error = 0.8 uncal um, Median = 28262 (-121.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 28256 (-121.1 uncal um), Max = 28265 (-121.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:30.098 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28261, posNoise = 4, negNoise = 5
17-03-17 17:24:30.098 -07 000000431 INF: Z Motor: After move to -0.121881, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:30.098 -07 000000431 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-17 17:24:30.098 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:30.098 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:30.098 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:30.098 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:30.098 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:30.098 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:30.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:30.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:30.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:30.108 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:30.118 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:24:30.118 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:24:30.118 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:30.318 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:30.518 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:30.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:30.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:30.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:24:30.708 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:30.708 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:30.708 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 591 ms overall
17-03-17 17:24:31.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:24:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:31.108 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:24:31.208 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:31.218 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:31.228 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=19.31]
17-03-17 17:24:31.228 -07 000000431 INF: Scanning Z-Position: -0.11988
17-03-17 17:24:31.228 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 26188, sync = True, waitForSettling = True)
17-03-17 17:24:31.228 -07 000000431 INF: Z Motor: Moving to -0.119881 mm, started at -0.121878 mm, distance = 2.00 um
17-03-17 17:24:31.228 -07 000000431 INF: FPGA: Xmit ZDACW 26188\n [Z Motor]
17-03-17 17:24:31.228 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:24:31.238 -07 000000431 INF: FPGA: 'ZDACW 26188' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:24:31.238 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:31.238 -07 000000458 INF: FPGA: Recv ZDACR 26188
17-03-17 17:24:31.248 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.248 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:31.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.398 -07 000000382 INF: FPGA: Recv ZSGSRD 27944
17-03-17 17:24:31.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:31.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.408 -07 000000458 INF: FPGA: Recv ZSGSRD 27953
17-03-17 17:24:31.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.418 -07 000000458 INF: FPGA: Recv ZSGSRD 27947
17-03-17 17:24:31.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.428 -07 000000458 INF: FPGA: Recv ZSGSRD 27947
17-03-17 17:24:31.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.438 -07 000000382 INF: FPGA: Recv ZSGSRD 27950
17-03-17 17:24:31.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.448 -07 000000458 INF: FPGA: Recv ZSGSRD 27953
17-03-17 17:24:31.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.458 -07 000000382 INF: FPGA: Recv ZSGSRD 27958
17-03-17 17:24:31.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.468 -07 000000433 INF: FPGA: Recv ZSGSRD 27946
17-03-17 17:24:31.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.478 -07 000000433 INF: FPGA: Recv ZSGSRD 27946
17-03-17 17:24:31.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:31.488 -07 000000433 INF: FPGA: Recv ZSGSRD 27948
17-03-17 17:24:31.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.498 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:31.498 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:31.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:31.498 -07 000000502 INF: FPGA: Recv ZPIEZORD 23486
17-03-17 17:24:31.508 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:31.508 -07 000000431 INF: Z Motor: Piezo is near 30.2 V (nominally 0 to 100 V), expect near 40.0 V, since DAC is at 3.996 V. Piezo Error = -9.8 V.
17-03-17 17:24:31.508 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -119.9 um, Read 10 ADC samples: Avg = 27949 (-119.1 uncal um), Error = 0.8 uncal um, Median = 27948 (-119.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 27944 (-119.1 uncal um), Max = 27958 (-119.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:31.508 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27949, posNoise = 9, negNoise = 5
17-03-17 17:24:31.508 -07 000000431 INF: Z Motor: After move to -0.119881, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:31.508 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:24:31.508 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:31.508 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:31.508 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:31.508 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:31.508 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:31.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:31.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:31.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:31.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:24:31.518 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:31.528 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:31.528 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:24:31.528 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:31.668 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.05619,
17-03-17 17:24:31.728 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:31.928 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:31.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:31.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:31.928 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:24:32.118 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:32.118 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:32.118 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:24:32.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:24:32.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:32.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:32.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:24:32.728 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:32.738 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:32.748 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=18.31]
17-03-17 17:24:32.748 -07 000000431 INF: Scanning Z-Position: -0.11788
17-03-17 17:24:32.748 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 25751, sync = True, waitForSettling = True)
17-03-17 17:24:32.748 -07 000000431 INF: Z Motor: Moving to -0.117881 mm, started at -0.119874 mm, distance = 1.99 um
17-03-17 17:24:32.748 -07 000000431 INF: FPGA: Xmit ZDACW 25751\n [Z Motor]
17-03-17 17:24:32.748 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:24:32.758 -07 000000431 INF: FPGA: 'ZDACW 25751' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:24:32.758 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:32.758 -07 000000632 INF: FPGA: Recv ZDACR 25751
17-03-17 17:24:32.768 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.768 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:32.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.918 -07 000000632 INF: FPGA: Recv ZSGSRD 27636
17-03-17 17:24:32.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:32.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.928 -07 000000569 INF: FPGA: Recv ZSGSRD 27643
17-03-17 17:24:32.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.938 -07 000000632 INF: FPGA: Recv ZSGSRD 27642
17-03-17 17:24:32.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.948 -07 000000569 INF: FPGA: Recv ZSGSRD 27636
17-03-17 17:24:32.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.958 -07 000000433 INF: FPGA: Recv ZSGSRD 27635
17-03-17 17:24:32.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.968 -07 000000433 INF: FPGA: Recv ZSGSRD 27641
17-03-17 17:24:32.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.978 -07 000000569 INF: FPGA: Recv ZSGSRD 27646
17-03-17 17:24:32.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.988 -07 000000433 INF: FPGA: Recv ZSGSRD 27639
17-03-17 17:24:32.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:32.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:32.998 -07 000000433 INF: FPGA: Recv ZSGSRD 27632
17-03-17 17:24:33.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:33.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:33.008 -07 000000433 INF: FPGA: Recv ZSGSRD 27638
17-03-17 17:24:33.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:33.018 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:33.018 -07 000000433 INF: FPGA: Recv ZPIEZORD 23244
17-03-17 17:24:33.028 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:33.028 -07 000000431 INF: Z Motor: Piezo is near 29.7 V (nominally 0 to 100 V), expect near 39.3 V, since DAC is at 3.929 V. Piezo Error = -9.6 V.
17-03-17 17:24:33.028 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -117.9 um, Read 10 ADC samples: Avg = 27639 (-117.1 uncal um), Error = 0.7 uncal um, Median = 27638 (-117.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 27632 (-117.1 uncal um), Max = 27646 (-117.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:24:33.028 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27639, posNoise = 7, negNoise = 7
17-03-17 17:24:33.028 -07 000000431 INF: Z Motor: After move to -0.117881, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:33.028 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:24:33.028 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:33.028 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:33.028 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:33.028 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:33.028 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:33.038 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:33.038 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:33.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:33.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:33.038 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:33.048 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:33.048 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:24:33.048 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:33.248 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:33.448 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:33.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:33.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:33.458 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:33.638 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:33.638 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:33.638 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:24:34.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:24:34.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:34.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:34.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:24:34.138 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:34.148 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:34.158 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=17.20]
17-03-17 17:24:34.158 -07 000000431 INF: Scanning Z-Position: -0.11588
17-03-17 17:24:34.158 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 25314, sync = True, waitForSettling = True)
17-03-17 17:24:34.158 -07 000000431 INF: Z Motor: Moving to -0.115880 mm, started at -0.117882 mm, distance = 2.00 um
17-03-17 17:24:34.158 -07 000000431 INF: FPGA: Xmit ZDACW 25314\n [Z Motor]
17-03-17 17:24:34.158 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:24:34.168 -07 000000431 INF: FPGA: 'ZDACW 25314' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:34.168 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:34.168 -07 000000502 INF: FPGA: Recv ZDACR 25314
17-03-17 17:24:34.178 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.178 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:34.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.328 -07 000000502 INF: FPGA: Recv ZSGSRD 27325
17-03-17 17:24:34.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:34.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.338 -07 000000429 INF: FPGA: Recv ZSGSRD 27327
17-03-17 17:24:34.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.348 -07 000000502 INF: FPGA: Recv ZSGSRD 27331
17-03-17 17:24:34.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.358 -07 000000429 INF: FPGA: Recv ZSGSRD 27332
17-03-17 17:24:34.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.368 -07 000000502 INF: FPGA: Recv ZSGSRD 27326
17-03-17 17:24:34.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.378 -07 000000502 INF: FPGA: Recv ZSGSRD 27326
17-03-17 17:24:34.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.388 -07 000000502 INF: FPGA: Recv ZSGSRD 27326
17-03-17 17:24:34.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.398 -07 000000632 INF: FPGA: Recv ZSGSRD 27335
17-03-17 17:24:34.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.408 -07 000000561 INF: FPGA: Recv ZSGSRD 27329
17-03-17 17:24:34.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:34.418 -07 000000433 INF: FPGA: Recv ZSGSRD 27324
17-03-17 17:24:34.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.428 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:34.428 -07 000000632 INF: FPGA: Recv ZPIEZORD 23010
17-03-17 17:24:34.438 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:34.438 -07 000000431 INF: Z Motor: Piezo is near 29.2 V (nominally 0 to 100 V), expect near 38.6 V, since DAC is at 3.863 V. Piezo Error = -9.5 V.
17-03-17 17:24:34.438 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -115.9 um, Read 10 ADC samples: Avg = 27328 (-115.1 uncal um), Error = 0.7 uncal um, Median = 27326 (-115.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 27324 (-115.1 uncal um), Max = 27335 (-115.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:24:34.438 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27328, posNoise = 7, negNoise = 4
17-03-17 17:24:34.438 -07 000000431 INF: Z Motor: After move to -0.115880, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:34.438 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:34.438 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:34.438 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:34.438 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:34.438 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:34.438 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:34.438 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:34.438 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:24:34.448 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:34.448 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:34.448 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:34.458 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:34.458 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:24:34.458 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:34.658 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:34.858 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:34.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:34.858 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:34.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:24:35.048 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:35.048 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:35.048 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 589 ms overall
17-03-17 17:24:35.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:24:35.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:35.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:35.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:35.758 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:35.768 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:35.778 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=16.79]
17-03-17 17:24:35.778 -07 000000431 INF: Scanning Z-Position: -0.11388
17-03-17 17:24:35.778 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 24877, sync = True, waitForSettling = True)
17-03-17 17:24:35.778 -07 000000431 INF: Z Motor: Moving to -0.113880 mm, started at -0.115884 mm, distance = 2.00 um
17-03-17 17:24:35.778 -07 000000431 INF: FPGA: Xmit ZDACW 24877\n [Z Motor]
17-03-17 17:24:35.778 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:24:35.788 -07 000000431 INF: FPGA: 'ZDACW 24877' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:24:35.788 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:35.788 -07 000000618 INF: FPGA: Recv ZDACR 24877
17-03-17 17:24:35.798 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:35.798 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:35.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:35.948 -07 000000569 INF: FPGA: Recv ZSGSRD 27014
17-03-17 17:24:35.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:35.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:35.958 -07 000000458 INF: FPGA: Recv ZSGSRD 27019
17-03-17 17:24:35.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:35.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:35.968 -07 000000429 INF: FPGA: Recv ZSGSRD 27018
17-03-17 17:24:35.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:35.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:35.978 -07 000000632 INF: FPGA: Recv ZSGSRD 27025
17-03-17 17:24:35.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:35.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:35.988 -07 000000561 INF: FPGA: Recv ZSGSRD 27014
17-03-17 17:24:35.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:35.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:35.998 -07 000000632 INF: FPGA: Recv ZSGSRD 27012
17-03-17 17:24:36.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:36.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:36.008 -07 000000561 INF: FPGA: Recv ZSGSRD 27020
17-03-17 17:24:36.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:36.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:36.018 -07 000000458 INF: FPGA: Recv ZSGSRD 27018
17-03-17 17:24:36.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:36.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:36.028 -07 000000569 INF: FPGA: Recv ZSGSRD 27016
17-03-17 17:24:36.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:36.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:36.038 -07 000000632 INF: FPGA: Recv ZSGSRD 27013
17-03-17 17:24:36.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:36.048 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:36.048 -07 000000618 INF: FPGA: Recv ZPIEZORD 22770
17-03-17 17:24:36.058 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:36.058 -07 000000431 INF: Z Motor: Piezo is near 28.6 V (nominally 0 to 100 V), expect near 38.0 V, since DAC is at 3.796 V. Piezo Error = -9.3 V.
17-03-17 17:24:36.058 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -113.9 um, Read 10 ADC samples: Avg = 27017 (-113.1 uncal um), Error = 0.7 uncal um, Median = 27017 (-113.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 27012 (-113.1 uncal um), Max = 27025 (-113.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:36.058 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27017, posNoise = 8, negNoise = 5
17-03-17 17:24:36.058 -07 000000431 INF: Z Motor: After move to -0.113880, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:36.058 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:24:36.058 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:36.058 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:36.058 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:36.058 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:36.058 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:36.058 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:36.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:36.068 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:36.068 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:36.068 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:36.078 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:36.078 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:36.078 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:36.278 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:36.478 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:36.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:36.478 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:36.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:36.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:36.668 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:36.668 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:36.668 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:24:37.028 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.045313,
17-03-17 17:24:37.068 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:24:37.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:37.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:24:37.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 598 ms.
17-03-17 17:24:37.158 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:37.168 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:37.178 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:37.188 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=16.27]
17-03-17 17:24:37.188 -07 000000431 INF: Scanning Z-Position: -0.11188
17-03-17 17:24:37.188 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 24440, sync = True, waitForSettling = True)
17-03-17 17:24:37.188 -07 000000431 INF: Z Motor: Moving to -0.111879 mm, started at -0.113886 mm, distance = 2.01 um
17-03-17 17:24:37.188 -07 000000431 INF: FPGA: Xmit ZDACW 24440\n [Z Motor]
17-03-17 17:24:37.188 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:24:37.198 -07 000000431 INF: FPGA: 'ZDACW 24440' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:37.198 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:37.198 -07 000000433 INF: FPGA: Recv ZDACR 24440
17-03-17 17:24:37.208 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.208 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:37.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.358 -07 000000433 INF: FPGA: Recv ZSGSRD 26704
17-03-17 17:24:37.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:37.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.368 -07 000000433 INF: FPGA: Recv ZSGSRD 26705
17-03-17 17:24:37.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.378 -07 000000502 INF: FPGA: Recv ZSGSRD 26711
17-03-17 17:24:37.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.388 -07 000000569 INF: FPGA: Recv ZSGSRD 26706
17-03-17 17:24:37.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.398 -07 000000569 INF: FPGA: Recv ZSGSRD 26703
17-03-17 17:24:37.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.408 -07 000000569 INF: FPGA: Recv ZSGSRD 26709
17-03-17 17:24:37.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.418 -07 000000569 INF: FPGA: Recv ZSGSRD 26709
17-03-17 17:24:37.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.428 -07 000000569 INF: FPGA: Recv ZSGSRD 26709
17-03-17 17:24:37.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.438 -07 000000502 INF: FPGA: Recv ZSGSRD 26701
17-03-17 17:24:37.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:37.448 -07 000000569 INF: FPGA: Recv ZSGSRD 26711
17-03-17 17:24:37.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.458 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:37.458 -07 000000569 INF: FPGA: Recv ZPIEZORD 22484
17-03-17 17:24:37.468 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:37.468 -07 000000431 INF: Z Motor: Piezo is near 28.0 V (nominally 0 to 100 V), expect near 37.3 V, since DAC is at 3.729 V. Piezo Error = -9.3 V.
17-03-17 17:24:37.468 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -111.9 um, Read 10 ADC samples: Avg = 26707 (-111.2 uncal um), Error = 0.7 uncal um, Median = 26708 (-111.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 26701 (-111.1 uncal um), Max = 26711 (-111.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:37.468 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26707, posNoise = 4, negNoise = 6
17-03-17 17:24:37.468 -07 000000431 INF: Z Motor: After move to -0.111879, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:37.468 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:37.468 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:37.468 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:37.468 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:37.468 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:37.468 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:37.468 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:37.478 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:37.478 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:37.478 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:37.478 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:37.488 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:37.488 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:37.488 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:37.688 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:37.888 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:37.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:37.888 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:37.888 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:38.078 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:38.078 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:38.078 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:24:38.478 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:24:38.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:38.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:38.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:24:38.578 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:38.588 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:38.598 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=15.76]
17-03-17 17:24:38.598 -07 000000431 INF: Scanning Z-Position: -0.10988
17-03-17 17:24:38.598 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 24003, sync = True, waitForSettling = True)
17-03-17 17:24:38.598 -07 000000431 INF: Z Motor: Moving to -0.109879 mm, started at -0.111895 mm, distance = 2.02 um
17-03-17 17:24:38.598 -07 000000431 INF: FPGA: Xmit ZDACW 24003\n [Z Motor]
17-03-17 17:24:38.598 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:24:38.608 -07 000000431 INF: FPGA: 'ZDACW 24003' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:38.608 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:38.608 -07 000000618 INF: FPGA: Recv ZDACR 24003
17-03-17 17:24:38.618 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.618 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:38.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.768 -07 000000502 INF: FPGA: Recv ZSGSRD 26400
17-03-17 17:24:38.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:38.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.778 -07 000000433 INF: FPGA: Recv ZSGSRD 26394
17-03-17 17:24:38.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.788 -07 000000502 INF: FPGA: Recv ZSGSRD 26393
17-03-17 17:24:38.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.798 -07 000000433 INF: FPGA: Recv ZSGSRD 26397
17-03-17 17:24:38.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.808 -07 000000433 INF: FPGA: Recv ZSGSRD 26400
17-03-17 17:24:38.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.818 -07 000000433 INF: FPGA: Recv ZSGSRD 26396
17-03-17 17:24:38.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.828 -07 000000433 INF: FPGA: Recv ZSGSRD 26394
17-03-17 17:24:38.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.838 -07 000000433 INF: FPGA: Recv ZSGSRD 26398
17-03-17 17:24:38.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.848 -07 000000632 INF: FPGA: Recv ZSGSRD 26399
17-03-17 17:24:38.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:38.858 -07 000000632 INF: FPGA: Recv ZSGSRD 26394
17-03-17 17:24:38.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.868 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:38.868 -07 000000433 INF: FPGA: Recv ZPIEZORD 22237
17-03-17 17:24:38.878 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:38.878 -07 000000431 INF: Z Motor: Piezo is near 27.5 V (nominally 0 to 100 V), expect near 36.6 V, since DAC is at 3.663 V. Piezo Error = -9.1 V.
17-03-17 17:24:38.878 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -109.9 um, Read 10 ADC samples: Avg = 26396 (-109.2 uncal um), Error = 0.7 uncal um, Median = 26396 (-109.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 26393 (-109.1 uncal um), Max = 26400 (-109.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:24:38.878 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26396, posNoise = 4, negNoise = 3
17-03-17 17:24:38.878 -07 000000431 INF: Z Motor: After move to -0.109879, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:38.878 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:38.878 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:38.878 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:38.878 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:38.878 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:38.878 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:38.878 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:38.888 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:38.888 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:38.888 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:38.888 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:38.898 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:38.898 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:38.908 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:39.098 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:39.298 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:39.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:39.298 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:39.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:24:39.488 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:39.498 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:39.498 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:24:39.888 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:24:39.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:39.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:39.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:24:40.098 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:40.108 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:40.118 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=15.72]
17-03-17 17:24:40.118 -07 000000431 INF: Scanning Z-Position: -0.10788
17-03-17 17:24:40.118 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 23566, sync = True, waitForSettling = True)
17-03-17 17:24:40.118 -07 000000431 INF: Z Motor: Moving to -0.107878 mm, started at -0.109897 mm, distance = 2.02 um
17-03-17 17:24:40.118 -07 000000431 INF: FPGA: Xmit ZDACW 23566\n [Z Motor]
17-03-17 17:24:40.118 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:24:40.128 -07 000000431 INF: FPGA: 'ZDACW 23566' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:40.128 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:40.128 -07 000000569 INF: FPGA: Recv ZDACR 23566
17-03-17 17:24:40.138 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.138 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:40.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.288 -07 000000569 INF: FPGA: Recv ZSGSRD 26084
17-03-17 17:24:40.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:40.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.298 -07 000000569 INF: FPGA: Recv ZSGSRD 26087
17-03-17 17:24:40.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.308 -07 000000569 INF: FPGA: Recv ZSGSRD 26082
17-03-17 17:24:40.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.318 -07 000000569 INF: FPGA: Recv ZSGSRD 26082
17-03-17 17:24:40.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.328 -07 000000561 INF: FPGA: Recv ZSGSRD 26085
17-03-17 17:24:40.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.338 -07 000000569 INF: FPGA: Recv ZSGSRD 26085
17-03-17 17:24:40.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.348 -07 000000569 INF: FPGA: Recv ZSGSRD 26083
17-03-17 17:24:40.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.358 -07 000000561 INF: FPGA: Recv ZSGSRD 26080
17-03-17 17:24:40.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.368 -07 000000569 INF: FPGA: Recv ZSGSRD 26087
17-03-17 17:24:40.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:40.378 -07 000000569 INF: FPGA: Recv ZSGSRD 26086
17-03-17 17:24:40.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.388 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:40.388 -07 000000632 INF: FPGA: Recv ZPIEZORD 22018
17-03-17 17:24:40.398 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:40.398 -07 000000431 INF: Z Motor: Piezo is near 27.0 V (nominally 0 to 100 V), expect near 36.0 V, since DAC is at 3.596 V. Piezo Error = -8.9 V.
17-03-17 17:24:40.398 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -107.9 um, Read 10 ADC samples: Avg = 26084 (-107.2 uncal um), Error = 0.7 uncal um, Median = 26084 (-107.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 26080 (-107.1 uncal um), Max = 26087 (-107.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:24:40.398 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26084, posNoise = 3, negNoise = 4
17-03-17 17:24:40.398 -07 000000431 INF: Z Motor: After move to -0.107878, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:40.398 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:24:40.398 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:40.398 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:40.398 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:40.398 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:40.398 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:40.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:40.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:40.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:40.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:40.408 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:40.418 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:24:40.418 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:24:40.418 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:40.618 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:40.818 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:40.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:40.818 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:40.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:24:41.008 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:41.008 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:41.008 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:24:41.408 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:24:41.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:41.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:41.408 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:24:41.498 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:41.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:41.718 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:41.728 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:41.738 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=15.27]
17-03-17 17:24:41.738 -07 000000431 INF: Scanning Z-Position: -0.10588
17-03-17 17:24:41.738 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 23129, sync = True, waitForSettling = True)
17-03-17 17:24:41.738 -07 000000431 INF: Z Motor: Moving to -0.105878 mm, started at -0.107893 mm, distance = 2.01 um
17-03-17 17:24:41.738 -07 000000431 INF: FPGA: Xmit ZDACW 23129\n [Z Motor]
17-03-17 17:24:41.738 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:24:41.748 -07 000000431 INF: FPGA: 'ZDACW 23129' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:41.758 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:41.758 -07 000000569 INF: FPGA: Recv ZDACR 23129
17-03-17 17:24:41.768 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:24:41.768 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:41.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.918 -07 000000627 INF: FPGA: Recv ZSGSRD 25777
17-03-17 17:24:41.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:41.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.928 -07 000000627 INF: FPGA: Recv ZSGSRD 25769
17-03-17 17:24:41.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:41.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.938 -07 000000561 INF: FPGA: Recv ZSGSRD 25775
17-03-17 17:24:41.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:41.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.948 -07 000000627 INF: FPGA: Recv ZSGSRD 25778
17-03-17 17:24:41.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:41.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.958 -07 000000632 INF: FPGA: Recv ZSGSRD 25774
17-03-17 17:24:41.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:41.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.968 -07 000000627 INF: FPGA: Recv ZSGSRD 25775
17-03-17 17:24:41.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:41.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.978 -07 000000458 INF: FPGA: Recv ZSGSRD 25777
17-03-17 17:24:41.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:41.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.988 -07 000000429 INF: FPGA: Recv ZSGSRD 25773
17-03-17 17:24:41.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:41.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:41.998 -07 000000632 INF: FPGA: Recv ZSGSRD 25773
17-03-17 17:24:42.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:42.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:42.008 -07 000000502 INF: FPGA: Recv ZSGSRD 25771
17-03-17 17:24:42.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:42.018 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:42.018 -07 000000632 INF: FPGA: Recv ZPIEZORD 21755
17-03-17 17:24:42.028 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:42.028 -07 000000431 INF: Z Motor: Piezo is near 26.5 V (nominally 0 to 100 V), expect near 35.3 V, since DAC is at 3.529 V. Piezo Error = -8.8 V.
17-03-17 17:24:42.028 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -105.9 um, Read 10 ADC samples: Avg = 25774 (-105.2 uncal um), Error = 0.7 uncal um, Median = 25774 (-105.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 25769 (-105.1 uncal um), Max = 25778 (-105.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:42.028 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25774, posNoise = 4, negNoise = 5
17-03-17 17:24:42.028 -07 000000431 INF: Z Motor: After move to -0.105878, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:42.028 -07 000000431 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 17:24:42.028 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:42.028 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:42.028 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:42.028 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:42.038 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:42.038 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:42.038 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:42.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:42.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:42.038 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:42.048 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:42.048 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:42.078 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:42.268 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:42.388 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.030322,
17-03-17 17:24:42.468 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:42.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:42.468 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:42.478 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:42.658 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:42.658 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:42.658 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 607 ms overall
17-03-17 17:24:43.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:24:43.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:43.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:43.068 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:43.168 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:43.178 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:43.188 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=14.98]
17-03-17 17:24:43.188 -07 000000431 INF: Scanning Z-Position: -0.10388
17-03-17 17:24:43.188 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 22693, sync = True, waitForSettling = True)
17-03-17 17:24:43.188 -07 000000431 INF: Z Motor: Moving to -0.103882 mm, started at -0.105901 mm, distance = 2.02 um
17-03-17 17:24:43.188 -07 000000431 INF: FPGA: Xmit ZDACW 22693\n [Z Motor]
17-03-17 17:24:43.188 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:24:43.198 -07 000000431 INF: FPGA: 'ZDACW 22693' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:43.198 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:43.198 -07 000000429 INF: FPGA: Recv ZDACR 22693
17-03-17 17:24:43.208 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.208 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:43.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.358 -07 000000438 INF: FPGA: Recv ZSGSRD 25462
17-03-17 17:24:43.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:43.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.368 -07 000000627 INF: FPGA: Recv ZSGSRD 25466
17-03-17 17:24:43.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.378 -07 000000632 INF: FPGA: Recv ZSGSRD 25464
17-03-17 17:24:43.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.388 -07 000000458 INF: FPGA: Recv ZSGSRD 25456
17-03-17 17:24:43.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.398 -07 000000438 INF: FPGA: Recv ZSGSRD 25467
17-03-17 17:24:43.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.408 -07 000000458 INF: FPGA: Recv ZSGSRD 25468
17-03-17 17:24:43.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.418 -07 000000632 INF: FPGA: Recv ZSGSRD 25463
17-03-17 17:24:43.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.428 -07 000000458 INF: FPGA: Recv ZSGSRD 25466
17-03-17 17:24:43.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.438 -07 000000438 INF: FPGA: Recv ZSGSRD 25461
17-03-17 17:24:43.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:43.448 -07 000000561 INF: FPGA: Recv ZSGSRD 25464
17-03-17 17:24:43.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.458 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:43.458 -07 000000438 INF: FPGA: Recv ZPIEZORD 21536
17-03-17 17:24:43.468 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:43.468 -07 000000431 INF: Z Motor: Piezo is near 26.0 V (nominally 0 to 100 V), expect near 34.6 V, since DAC is at 3.463 V. Piezo Error = -8.6 V.
17-03-17 17:24:43.468 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -103.9 um, Read 10 ADC samples: Avg = 25464 (-103.2 uncal um), Error = 0.7 uncal um, Median = 25464 (-103.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 25456 (-103.1 uncal um), Max = 25468 (-103.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:24:43.468 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25464, posNoise = 4, negNoise = 8
17-03-17 17:24:43.468 -07 000000431 INF: Z Motor: After move to -0.103882, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:43.468 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:43.468 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:43.468 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:43.468 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:43.468 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:43.468 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:43.468 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:43.478 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:43.478 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:43.478 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:43.478 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:43.488 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:24:43.488 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:24:43.488 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:43.688 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:43.888 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:43.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:43.888 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:43.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:44.078 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:44.078 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:44.078 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:24:44.478 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:24:44.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:44.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:44.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 597 ms.
17-03-17 17:24:44.788 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:44.798 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:44.808 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=15.08]
17-03-17 17:24:44.808 -07 000000431 INF: Scanning Z-Position: -0.10188
17-03-17 17:24:44.808 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 22256, sync = True, waitForSettling = True)
17-03-17 17:24:44.808 -07 000000431 INF: Z Motor: Moving to -0.101881 mm, started at -0.103909 mm, distance = 2.03 um
17-03-17 17:24:44.808 -07 000000431 INF: FPGA: Xmit ZDACW 22256\n [Z Motor]
17-03-17 17:24:44.808 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:24:44.818 -07 000000431 INF: FPGA: 'ZDACW 22256' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:44.818 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:44.818 -07 000000618 INF: FPGA: Recv ZDACR 22256
17-03-17 17:24:44.828 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:44.828 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:44.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:44.978 -07 000000627 INF: FPGA: Recv ZSGSRD 25156
17-03-17 17:24:44.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:44.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:44.988 -07 000000502 INF: FPGA: Recv ZSGSRD 25151
17-03-17 17:24:44.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:44.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:44.998 -07 000000561 INF: FPGA: Recv ZSGSRD 25154
17-03-17 17:24:45.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:45.008 -07 000000502 INF: FPGA: Recv ZSGSRD 25155
17-03-17 17:24:45.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:45.018 -07 000000458 INF: FPGA: Recv ZSGSRD 25151
17-03-17 17:24:45.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:45.028 -07 000000429 INF: FPGA: Recv ZSGSRD 25153
17-03-17 17:24:45.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:45.038 -07 000000632 INF: FPGA: Recv ZSGSRD 25145
17-03-17 17:24:45.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:45.048 -07 000000502 INF: FPGA: Recv ZSGSRD 25147
17-03-17 17:24:45.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:45.058 -07 000000561 INF: FPGA: Recv ZSGSRD 25159
17-03-17 17:24:45.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:45.068 -07 000000502 INF: FPGA: Recv ZSGSRD 25154
17-03-17 17:24:45.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.078 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:45.078 -07 000000429 INF: FPGA: Recv ZPIEZORD 21279
17-03-17 17:24:45.088 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:45.088 -07 000000431 INF: Z Motor: Piezo is near 25.5 V (nominally 0 to 100 V), expect near 34.0 V, since DAC is at 3.396 V. Piezo Error = -8.5 V.
17-03-17 17:24:45.088 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -101.9 um, Read 10 ADC samples: Avg = 25152 (-101.2 uncal um), Error = 0.7 uncal um, Median = 25154 (-101.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 25145 (-101.1 uncal um), Max = 25159 (-101.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:24:45.088 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25152, posNoise = 7, negNoise = 7
17-03-17 17:24:45.088 -07 000000431 INF: Z Motor: After move to -0.101881, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:45.088 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:45.088 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:45.088 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:45.088 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:45.088 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:45.088 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:45.088 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:45.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:45.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:45.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:45.098 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:45.108 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:45.108 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:45.118 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:45.308 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:45.508 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:45.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:45.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:45.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:45.708 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:45.708 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:45.708 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 589 ms overall
17-03-17 17:24:46.098 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:24:46.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:46.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:46.108 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:46.208 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:46.218 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:46.228 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=14.59]
17-03-17 17:24:46.228 -07 000000431 INF: Scanning Z-Position: -0.09988
17-03-17 17:24:46.228 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 21819, sync = True, waitForSettling = True)
17-03-17 17:24:46.228 -07 000000431 INF: Z Motor: Moving to -0.099881 mm, started at -0.101905 mm, distance = 2.02 um
17-03-17 17:24:46.228 -07 000000431 INF: FPGA: Xmit ZDACW 21819\n [Z Motor]
17-03-17 17:24:46.228 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:24:46.238 -07 000000431 INF: FPGA: 'ZDACW 21819' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:24:46.238 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:46.238 -07 000000429 INF: FPGA: Recv ZDACR 21819
17-03-17 17:24:46.248 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.248 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:46.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.398 -07 000000502 INF: FPGA: Recv ZSGSRD 24843
17-03-17 17:24:46.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:46.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.408 -07 000000618 INF: FPGA: Recv ZSGSRD 24841
17-03-17 17:24:46.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:24:46.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.418 -07 000000429 INF: FPGA: Recv ZSGSRD 24835
17-03-17 17:24:46.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.428 -07 000000618 INF: FPGA: Recv ZSGSRD 24841
17-03-17 17:24:46.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.438 -07 000000561 INF: FPGA: Recv ZSGSRD 24841
17-03-17 17:24:46.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.448 -07 000000618 INF: FPGA: Recv ZSGSRD 24844
17-03-17 17:24:46.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.458 -07 000000627 INF: FPGA: Recv ZSGSRD 24841
17-03-17 17:24:46.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.468 -07 000000618 INF: FPGA: Recv ZSGSRD 24840
17-03-17 17:24:46.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.478 -07 000000438 INF: FPGA: Recv ZSGSRD 24844
17-03-17 17:24:46.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:46.488 -07 000000561 INF: FPGA: Recv ZSGSRD 24834
17-03-17 17:24:46.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.498 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:46.498 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:46.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:46.498 -07 000000541 INF: FPGA: Recv ZPIEZORD 21053
17-03-17 17:24:46.508 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:46.508 -07 000000431 INF: Z Motor: Piezo is near 25.0 V (nominally 0 to 100 V), expect near 33.3 V, since DAC is at 3.329 V. Piezo Error = -8.3 V.
17-03-17 17:24:46.508 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -99.9 um, Read 10 ADC samples: Avg = 24840 (-99.2 uncal um), Error = 0.7 uncal um, Median = 24841 (-99.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 24834 (-99.2 uncal um), Max = 24844 (-99.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:46.508 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 24840, posNoise = 4, negNoise = 6
17-03-17 17:24:46.508 -07 000000431 INF: Z Motor: After move to -0.099881, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:46.508 -07 000000431 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:24:46.508 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:46.508 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:46.508 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:46.508 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:46.508 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:46.508 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:46.518 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:46.518 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:46.518 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:46.518 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:46.528 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:24:46.528 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms.
17-03-17 17:24:46.528 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:46.728 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:46.928 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:46.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:46.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:46.928 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:47.118 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:47.118 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:47.118 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:24:47.508 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:24:47.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:47.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:47.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:24:47.718 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:47.728 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:47.738 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=14.04]
17-03-17 17:24:47.738 -07 000000431 INF: Scanning Z-Position: -0.09788
17-03-17 17:24:47.738 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 21382, sync = True, waitForSettling = True)
17-03-17 17:24:47.738 -07 000000431 INF: Z Motor: Moving to -0.097881 mm, started at -0.099901 mm, distance = 2.02 um
17-03-17 17:24:47.738 -07 000000431 INF: FPGA: Xmit ZDACW 21382\n [Z Motor]
17-03-17 17:24:47.738 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:24:47.748 -07 000000431 INF: FPGA: 'ZDACW 21382' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:47.758 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:47.758 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.005817,
17-03-17 17:24:47.758 -07 000000458 INF: FPGA: Recv ZDACR 21382
17-03-17 17:24:47.768 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:24:47.768 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:47.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.918 -07 000000627 INF: FPGA: Recv ZSGSRD 24528
17-03-17 17:24:47.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:47.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.928 -07 000000438 INF: FPGA: Recv ZSGSRD 24531
17-03-17 17:24:47.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:47.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.938 -07 000000502 INF: FPGA: Recv ZSGSRD 24528
17-03-17 17:24:47.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:47.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.948 -07 000000632 INF: FPGA: Recv ZSGSRD 24527
17-03-17 17:24:47.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:47.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.958 -07 000000627 INF: FPGA: Recv ZSGSRD 24522
17-03-17 17:24:47.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:47.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.968 -07 000000618 INF: FPGA: Recv ZSGSRD 24532
17-03-17 17:24:47.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:47.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.978 -07 000000627 INF: FPGA: Recv ZSGSRD 24532
17-03-17 17:24:47.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:47.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.988 -07 000000458 INF: FPGA: Recv ZSGSRD 24527
17-03-17 17:24:47.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:47.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:47.998 -07 000000438 INF: FPGA: Recv ZSGSRD 24531
17-03-17 17:24:48.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:48.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:48.008 -07 000000627 INF: FPGA: Recv ZSGSRD 24527
17-03-17 17:24:48.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:48.018 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:48.018 -07 000000632 INF: FPGA: Recv ZPIEZORD 20780
17-03-17 17:24:48.028 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:48.028 -07 000000431 INF: Z Motor: Piezo is near 24.4 V (nominally 0 to 100 V), expect near 32.6 V, since DAC is at 3.263 V. Piezo Error = -8.2 V.
17-03-17 17:24:48.028 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -97.9 um, Read 10 ADC samples: Avg = 24528 (-97.2 uncal um), Error = 0.7 uncal um, Median = 24528 (-97.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 24522 (-97.2 uncal um), Max = 24532 (-97.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:48.028 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 24528, posNoise = 4, negNoise = 6
17-03-17 17:24:48.028 -07 000000431 INF: Z Motor: After move to -0.097881, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:48.028 -07 000000431 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:24:48.028 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:48.028 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:48.028 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:48.028 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:48.028 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:48.028 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:48.038 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:48.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:48.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:48.038 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:48.048 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:48.048 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:24:48.058 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:48.248 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:48.448 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:48.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:48.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:48.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:24:48.648 -07 000000502 INF: FPGA: Recv @CAMSNAP 586
17-03-17 17:24:48.648 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:48.648 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 591 ms overall
17-03-17 17:24:49.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:24:49.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:49.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:49.048 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:49.148 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:49.158 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:49.168 -07 000000431 INF: Image SNR check: image is Dark  [peak (Max-Min)=14.56]
17-03-17 17:24:49.168 -07 000000431 INF: Through-focus: Z pos. [um] vs. Focus metric
17-03-17 17:24:49.168 -07 000000431 INF:   -177.88  2.135871
17-03-17 17:24:49.168 -07 000000431 INF:   -175.88  2.13631
17-03-17 17:24:49.168 -07 000000431 INF:   -173.88  2.143413
17-03-17 17:24:49.168 -07 000000431 INF:   -171.88  2.14114
17-03-17 17:24:49.168 -07 000000431 INF:   -169.88  2.138667
17-03-17 17:24:49.168 -07 000000431 INF:   -167.88  2.137392
17-03-17 17:24:49.168 -07 000000431 INF:   -165.88  2.135106
17-03-17 17:24:49.168 -07 000000431 INF:   -163.88  2.14023
17-03-17 17:24:49.168 -07 000000431 INF:   -161.88  2.142297
17-03-17 17:24:49.168 -07 000000431 INF:   -159.88  2.143255
17-03-17 17:24:49.168 -07 000000431 INF:   -157.88  2.133531
17-03-17 17:24:49.168 -07 000000431 INF:   -155.88  2.142248
17-03-17 17:24:49.168 -07 000000431 INF:   -153.88  2.138983
17-03-17 17:24:49.168 -07 000000431 INF:   -151.88  2.139495
17-03-17 17:24:49.168 -07 000000431 INF:   -149.88  2.140642
17-03-17 17:24:49.168 -07 000000431 INF:   -147.88  2.143833
17-03-17 17:24:49.168 -07 000000431 INF:   -145.88  2.145442
17-03-17 17:24:49.168 -07 000000431 INF:   -143.88  2.148901
17-03-17 17:24:49.168 -07 000000431 INF:   -141.88  2.171886
17-03-17 17:24:49.168 -07 000000431 INF:   -139.88  2.218624
17-03-17 17:24:49.168 -07 000000431 INF:   -137.88  2.424261
17-03-17 17:24:49.168 -07 000000431 INF:   -135.88  3.870204
17-03-17 17:24:49.168 -07 000000431 INF:   -133.88  9.329252
17-03-17 17:24:49.168 -07 000000431 INF:   -131.88  3.128126
17-03-17 17:24:49.168 -07 000000431 INF:   -129.88  2.231702
17-03-17 17:24:49.168 -07 000000431 INF:   -127.88  2.153353
17-03-17 17:24:49.168 -07 000000431 INF:   -125.88  2.148875
17-03-17 17:24:49.168 -07 000000431 INF:   -123.88  2.144539
17-03-17 17:24:49.168 -07 000000431 INF:   -121.88  2.140599
17-03-17 17:24:49.168 -07 000000431 INF:   -119.88  2.143959
17-03-17 17:24:49.168 -07 000000431 INF:   -117.88  2.145933
17-03-17 17:24:49.168 -07 000000431 INF:   -115.88  2.139313
17-03-17 17:24:49.168 -07 000000431 INF:   -113.88  2.143332
17-03-17 17:24:49.168 -07 000000431 INF:   -111.88  2.141278
17-03-17 17:24:49.168 -07 000000431 INF:   -109.88  2.140678
17-03-17 17:24:49.168 -07 000000431 INF:   -107.88  2.140982
17-03-17 17:24:49.168 -07 000000431 INF:   -105.88  2.14438
17-03-17 17:24:49.168 -07 000000431 INF:   -103.88  2.143939
17-03-17 17:24:49.168 -07 000000431 INF:   -101.88  2.138316
17-03-17 17:24:49.168 -07 000000431 INF:   -99.88  2.14011
17-03-17 17:24:49.168 -07 000000431 INF:   -97.88  2.145449
17-03-17 17:24:49.168 -07 000000431 INF: Best-focus Z [um]: -134.0298
17-03-17 17:24:49.168 -07 000000431 INF: ===================  ===================
17-03-17 17:24:49.168 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95857 steps, sync = True, waitForSettling = True)
17-03-17 17:24:49.168 -07 000000431 INF: Y Motor: Moving to 59.9105 mm, started at 59.9136 mm, delta = -0.0031 mm
17-03-17 17:24:49.168 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:24:49.178 -07 000000438 INF: FPGA: Recv YRDPOS 122704
17-03-17 17:24:49.178 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:24:49.178 -07 000000431 INF: Y Motor: Encoder = 122704 = motor step 95862.5 = 59.9141 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:24:49.178 -07 000000431 INF: Y Motor: Last commanded position = 59.9105 mm (95856.8 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-17 17:24:49.178 -07 000000431 INF: Y Motor: Moving to 122697 encoder counts
17-03-17 17:24:49.178 -07 000000431 INF: FPGA: Xmit YMVTO 122697\n [Y Motor]
17-03-17 17:24:49.218 -07 000000627 INF: FPGA: Recv YMVTO 122697 10
17-03-17 17:24:49.218 -07 000000431 INF: FPGA: 'YMVTO 122697' command took 0 ms to send, 32 ms to get response, and 37 ms overall
17-03-17 17:24:49.218 -07 000000431 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-17 17:24:49.218 -07 000000431 INF: Y Motor: To move from 59.914 to 59.910 (-0.003 mm) should take 5 steps, but required 10 steps (0.006 mm). Slippage = 0.003 mm (-1.01%).
17-03-17 17:24:49.218 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122697' took 37 ms, distance = 0.003 mm, average velocity = 0.084 mm/sec
17-03-17 17:24:51.498 -07 000000632 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:52.218 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:24:52.218 -07 000000429 INF: FPGA: Recv YRDPOS 122692
17-03-17 17:24:52.228 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:52.228 -07 000000431 INF: Y Motor: Encoder = 122692 = motor step 95853.1 = 59.9082 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:24:52.238 -07 000000431 INF: Y Motor: After move to 59.910480, error = -0.002277, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:24:52.238 -07 000000431 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 17:24:52.238 -07 000000431 INF: Y Motor: Moved to 59.9082 after 3062 ms
17-03-17 17:24:52.238 -07 000000431 INF: Autofocus image to test SNR (Z position = -140.03 um)
17-03-17 17:24:52.238 -07 000000632 INF: Z Motor: Entering MoveAbsStepped (DAC = 30590, sync = True, waitForSettling = True)
17-03-17 17:24:52.238 -07 000000632 INF: Z Motor: Moving to -0.140032 mm, started at -0.097896 mm, distance = -42.14 um
17-03-17 17:24:52.238 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:24:52.248 -07 000000632 INF: FPGA: Xmit ZDACW 30590\n [Z Motor]
17-03-17 17:24:52.248 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:24:52.248 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 7 ms overall
17-03-17 17:24:52.248 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:24:52.258 -07 000000632 INF: FPGA: 'ZDACW 30590' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:24:52.258 -07 000000632 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:52.258 -07 000000502 INF: FPGA: Recv ZDACR 30590
17-03-17 17:24:52.268 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:24:52.268 -07 000000632 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:52.268 -07 000000632 INF: Z Motor: Waiting 500 ms for long move > 40 um
17-03-17 17:24:52.468 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:24:52.468 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 17:24:52.768 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.768 -07 000000458 INF: FPGA: Recv ZSGSRD 31089
17-03-17 17:24:52.778 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:52.778 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.778 -07 000000561 INF: FPGA: Recv ZSGSRD 31094
17-03-17 17:24:52.788 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:52.788 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.788 -07 000000458 INF: FPGA: Recv ZSGSRD 31089
17-03-17 17:24:52.798 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:52.818 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.818 -07 000000429 INF: FPGA: Recv ZSGSRD 31090
17-03-17 17:24:52.828 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:24:52.838 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.838 -07 000000458 INF: FPGA: Recv ZSGSRD 31088
17-03-17 17:24:52.848 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:24:52.848 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.848 -07 000000627 INF: FPGA: Recv ZSGSRD 31088
17-03-17 17:24:52.858 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:52.868 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.868 -07 000000438 INF: FPGA: Recv ZSGSRD 31089
17-03-17 17:24:52.878 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:24:52.878 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.878 -07 000000627 INF: FPGA: Recv ZSGSRD 31090
17-03-17 17:24:52.888 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:52.898 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.898 -07 000000502 INF: FPGA: Recv ZSGSRD 31085
17-03-17 17:24:52.908 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:24:52.908 -07 000000632 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:52.908 -07 000000627 INF: FPGA: Recv ZSGSRD 31091
17-03-17 17:24:52.918 -07 000000632 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:52.928 -07 000000632 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:52.928 -07 000000458 INF: FPGA: Recv ZPIEZORD 28177
17-03-17 17:24:52.938 -07 000000632 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:24:52.938 -07 000000632 INF: Z Motor: Piezo is near 40.2 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.668 V. Piezo Error = -6.5 V.
17-03-17 17:24:52.938 -07 000000632 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31089 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31089 (-139.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31085 (-139.2 uncal um), Max = 31094 (-139.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:24:52.938 -07 000000632 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31089, posNoise = 5, negNoise = 4
17-03-17 17:24:52.938 -07 000000632 INF: Z Motor: After move to -0.140032, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:52.938 -07 000000632 INF: Z Motor: MoveAbsStepped took 695 ms)
17-03-17 17:24:52.938 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:52.938 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:52.938 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:52.938 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:52.948 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:52.948 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:52.948 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:52.948 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:52.948 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:24:52.948 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:52.958 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:52.958 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:24:52.958 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:53.128 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.042558,
17-03-17 17:24:53.158 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:53.358 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:53.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:53.358 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:53.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:24:53.548 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:53.548 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:53.548 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:24:53.948 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:24:53.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:53.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:53.948 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:24:54.058 -07 000000431 INF: Right edge of AF image detected at column 2624
17-03-17 17:24:54.058 -07 000000431 INF: Image SNR check: start
17-03-17 17:24:54.078 -07 000000431 INF: Image SNR check: pass  [peak (Max-Min)=77.17]
17-03-17 17:24:54.078 -07 000000431 INF: =================== Collecting Focus Model Data. ===================
17-03-17 17:24:54.078 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:24:54.078 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:24:54.088 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:54.088 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:24:54.288 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:24:54.288 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:24:54.288 -07 000000431 INF: Scanning Z-Position: -0.14403
17-03-17 17:24:54.288 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:24:54.408 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:24:54.408 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 109 ms to send, 1 ms to get response, and 115 ms overall
17-03-17 17:24:54.408 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:24:54.608 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:24:54.608 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:24:54.608 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31463, sync = True, waitForSettling = True)
17-03-17 17:24:54.608 -07 000000431 INF: Z Motor: Moving to -0.144028 mm, started at -0.140046 mm, distance = -3.98 um
17-03-17 17:24:54.608 -07 000000431 INF: FPGA: Xmit ZDACW 31463\n [Z Motor]
17-03-17 17:24:54.608 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:24:54.618 -07 000000431 INF: FPGA: 'ZDACW 31463' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:24:54.618 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:54.618 -07 000000438 INF: FPGA: Recv ZDACR 31463
17-03-17 17:24:54.628 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.628 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:54.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.778 -07 000000502 INF: FPGA: Recv ZSGSRD 31714
17-03-17 17:24:54.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:54.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.788 -07 000000618 INF: FPGA: Recv ZSGSRD 31714
17-03-17 17:24:54.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.798 -07 000000627 INF: FPGA: Recv ZSGSRD 31712
17-03-17 17:24:54.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.808 -07 000000438 INF: FPGA: Recv ZSGSRD 31712
17-03-17 17:24:54.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.818 -07 000000429 INF: FPGA: Recv ZSGSRD 31708
17-03-17 17:24:54.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.828 -07 000000618 INF: FPGA: Recv ZSGSRD 31712
17-03-17 17:24:54.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.838 -07 000000632 INF: FPGA: Recv ZSGSRD 31710
17-03-17 17:24:54.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.848 -07 000000561 INF: FPGA: Recv ZSGSRD 31713
17-03-17 17:24:54.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.858 -07 000000502 INF: FPGA: Recv ZSGSRD 31710
17-03-17 17:24:54.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:54.868 -07 000000438 INF: FPGA: Recv ZSGSRD 31709
17-03-17 17:24:54.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.878 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:54.878 -07 000000632 INF: FPGA: Recv ZPIEZORD 28796
17-03-17 17:24:54.888 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:54.888 -07 000000431 INF: Z Motor: Piezo is near 41.5 V (nominally 0 to 100 V), expect near 48.0 V, since DAC is at 4.801 V. Piezo Error = -6.5 V.
17-03-17 17:24:54.888 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -144.0 um, Read 10 ADC samples: Avg = 31711 (-143.2 uncal um), Error = 0.8 uncal um, Median = 31712 (-143.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31708 (-143.2 uncal um), Max = 31714 (-143.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:24:54.888 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31711, posNoise = 3, negNoise = 3
17-03-17 17:24:54.888 -07 000000431 INF: Z Motor: After move to -0.144028, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:54.888 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:24:54.888 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:54.888 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:54.888 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:54.888 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:54.888 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:54.888 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:54.898 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:54.898 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:54.898 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:54.898 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:54.908 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:54.908 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:24:54.908 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:55.108 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:55.308 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:55.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:55.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:55.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:24:55.498 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:55.498 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:55.498 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:24:55.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:24:55.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:55.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:55.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:24:55.998 -07 000000431 INF: Using center-column region for through-focus analysis: Row=512; Col=2048
17-03-17 17:24:55.998 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:56.008 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:24:56.008 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:24:56.018 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:24:56.018 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:24:56.218 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:24:56.218 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:24:56.218 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32774, sync = True, waitForSettling = True)
17-03-17 17:24:56.218 -07 000000431 INF: Z Motor: Moving to -0.150030 mm, started at -0.144042 mm, distance = -5.99 um
17-03-17 17:24:56.218 -07 000000431 INF: FPGA: Xmit ZDACW 32774\n [Z Motor]
17-03-17 17:24:56.218 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:24:56.228 -07 000000431 INF: FPGA: 'ZDACW 32774' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:24:56.228 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:56.228 -07 000000561 INF: FPGA: Recv ZDACR 32774
17-03-17 17:24:56.238 -07 000000431 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.238 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:56.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.388 -07 000000632 INF: FPGA: Recv ZSGSRD 32640
17-03-17 17:24:56.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:24:56.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.398 -07 000000627 INF: FPGA: Recv ZSGSRD 32648
17-03-17 17:24:56.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.408 -07 000000429 INF: FPGA: Recv ZSGSRD 32642
17-03-17 17:24:56.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.418 -07 000000561 INF: FPGA: Recv ZSGSRD 32652
17-03-17 17:24:56.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.428 -07 000000458 INF: FPGA: Recv ZSGSRD 32649
17-03-17 17:24:56.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.438 -07 000000618 INF: FPGA: Recv ZSGSRD 32640
17-03-17 17:24:56.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.448 -07 000000502 INF: FPGA: Recv ZSGSRD 32651
17-03-17 17:24:56.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.458 -07 000000561 INF: FPGA: Recv ZSGSRD 32645
17-03-17 17:24:56.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.468 -07 000000429 INF: FPGA: Recv ZSGSRD 32641
17-03-17 17:24:56.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:56.478 -07 000000627 INF: FPGA: Recv ZSGSRD 32649
17-03-17 17:24:56.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.488 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:56.488 -07 000000632 INF: FPGA: Recv ZPIEZORD 29701
17-03-17 17:24:56.498 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:56.498 -07 000000431 INF: Z Motor: Piezo is near 43.4 V (nominally 0 to 100 V), expect near 50.0 V, since DAC is at 5.001 V. Piezo Error = -6.6 V.
17-03-17 17:24:56.498 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -150.0 um, Read 10 ADC samples: Avg = 32646 (-149.2 uncal um), Error = 0.8 uncal um, Median = 32646 (-149.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 32640 (-149.2 uncal um), Max = 32652 (-149.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:24:56.498 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32646, posNoise = 6, negNoise = 6
17-03-17 17:24:56.498 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:24:56.498 -07 000000431 INF: Z Motor: After move to -0.150030, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:56.498 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:24:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:24:56.498 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:56.498 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:56.498 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:56.498 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:56.498 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:56.498 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:56.508 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:24:56.508 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:56.508 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:56.508 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:56.518 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:24:56.518 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:24:56.518 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:56.718 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:56.918 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:56.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:56.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:56.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:57.108 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:57.108 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:57.108 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:24:57.508 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:24:57.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:57.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:57.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:24:57.828 -07 000000431 INF: MeasureProfile start
17-03-17 17:24:57.888 -07 000000431 INF: MeasureProfile done
17-03-17 17:24:57.888 -07 000000431 INF: Scanning Z-Position: -0.14353
17-03-17 17:24:57.898 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:24:57.898 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:24:57.908 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:57.908 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:24:58.108 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:24:58.108 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:24:58.108 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31354, sync = True, waitForSettling = True)
17-03-17 17:24:58.108 -07 000000431 INF: Z Motor: Moving to -0.143529 mm, started at -0.150048 mm, distance = 6.52 um
17-03-17 17:24:58.108 -07 000000431 INF: FPGA: Xmit ZDACW 31354\n [Z Motor]
17-03-17 17:24:58.108 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:24:58.118 -07 000000431 INF: FPGA: 'ZDACW 31354' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:24:58.118 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:58.118 -07 000000502 INF: FPGA: Recv ZDACR 31354
17-03-17 17:24:58.128 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.128 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:58.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.278 -07 000000627 INF: FPGA: Recv ZSGSRD 31637
17-03-17 17:24:58.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.298 -07 000000429 INF: FPGA: Recv ZSGSRD 31636
17-03-17 17:24:58.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:24:58.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.308 -07 000000618 INF: FPGA: Recv ZSGSRD 31629
17-03-17 17:24:58.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.318 -07 000000627 INF: FPGA: Recv ZSGSRD 31634
17-03-17 17:24:58.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.328 -07 000000569 INF: FPGA: Recv ZSGSRD 31632
17-03-17 17:24:58.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.338 -07 000000458 INF: FPGA: Recv ZSGSRD 31631
17-03-17 17:24:58.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.348 -07 000000561 INF: FPGA: Recv ZSGSRD 31627
17-03-17 17:24:58.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.358 -07 000000627 INF: FPGA: Recv ZSGSRD 31632
17-03-17 17:24:58.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.368 -07 000000618 INF: FPGA: Recv ZSGSRD 31633
17-03-17 17:24:58.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:58.378 -07 000000458 INF: FPGA: Recv ZSGSRD 31633
17-03-17 17:24:58.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.388 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:24:58.388 -07 000000438 INF: FPGA: Recv ZPIEZORD 28274
17-03-17 17:24:58.398 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:58.398 -07 000000431 INF: Z Motor: Piezo is near 40.4 V (nominally 0 to 100 V), expect near 47.8 V, since DAC is at 4.784 V. Piezo Error = -7.4 V.
17-03-17 17:24:58.398 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -143.5 um, Read 10 ADC samples: Avg = 31632 (-142.7 uncal um), Error = 0.8 uncal um, Median = 31632 (-142.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31627 (-142.7 uncal um), Max = 31637 (-142.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:24:58.398 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31632, posNoise = 5, negNoise = 5
17-03-17 17:24:58.398 -07 000000431 INF: Z Motor: After move to -0.143529, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:24:58.398 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:24:58.398 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:24:58.398 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:24:58.398 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:24:58.398 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:24:58.398 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:24:58.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:24:58.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:24:58.398 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:24:58.408 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:24:58.408 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:24:58.418 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:24:58.418 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:24:58.418 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:24:58.558 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.031682,
17-03-17 17:24:58.618 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:24:58.818 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:24:58.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:24:58.818 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:24:58.818 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:24:59.008 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:24:59.008 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:24:59.008 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:24:59.398 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:24:59.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:24:59.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:24:59.408 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:24:59.608 -07 000000431 INF: ComputeBrenner start
17-03-17 17:24:59.618 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:24:59.618 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:24:59.628 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:24:59.628 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:24:59.828 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:24:59.828 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:24:59.828 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32665, sync = True, waitForSettling = True)
17-03-17 17:24:59.828 -07 000000431 INF: Z Motor: Moving to -0.149531 mm, started at -0.143534 mm, distance = -6.00 um
17-03-17 17:24:59.828 -07 000000431 INF: FPGA: Xmit ZDACW 32665\n [Z Motor]
17-03-17 17:24:59.828 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:24:59.838 -07 000000431 INF: FPGA: 'ZDACW 32665' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:24:59.838 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:24:59.838 -07 000000429 INF: FPGA: Recv ZDACR 32665
17-03-17 17:24:59.848 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:24:59.848 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:24:59.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:24:59.998 -07 000000458 INF: FPGA: Recv ZSGSRD 32567
17-03-17 17:25:00.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:00.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.008 -07 000000569 INF: FPGA: Recv ZSGSRD 32569
17-03-17 17:25:00.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.018 -07 000000627 INF: FPGA: Recv ZSGSRD 32570
17-03-17 17:25:00.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.028 -07 000000561 INF: FPGA: Recv ZSGSRD 32571
17-03-17 17:25:00.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.038 -07 000000438 INF: FPGA: Recv ZSGSRD 32565
17-03-17 17:25:00.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.048 -07 000000569 INF: FPGA: Recv ZSGSRD 32566
17-03-17 17:25:00.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.058 -07 000000438 INF: FPGA: Recv ZSGSRD 32567
17-03-17 17:25:00.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.068 -07 000000561 INF: FPGA: Recv ZSGSRD 32568
17-03-17 17:25:00.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.078 -07 000000438 INF: FPGA: Recv ZSGSRD 32562
17-03-17 17:25:00.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:00.088 -07 000000569 INF: FPGA: Recv ZSGSRD 32569
17-03-17 17:25:00.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.098 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:00.098 -07 000000627 INF: FPGA: Recv ZPIEZORD 29503
17-03-17 17:25:00.108 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:00.108 -07 000000431 INF: Z Motor: Piezo is near 43.0 V (nominally 0 to 100 V), expect near 49.8 V, since DAC is at 4.984 V. Piezo Error = -6.8 V.
17-03-17 17:25:00.108 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -149.5 um, Read 10 ADC samples: Avg = 32567 (-148.7 uncal um), Error = 0.8 uncal um, Median = 32568 (-148.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 32562 (-148.7 uncal um), Max = 32571 (-148.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:00.108 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32567, posNoise = 4, negNoise = 5
17-03-17 17:25:00.108 -07 000000431 INF: Z Motor: After move to -0.149531, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:00.108 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:25:00.108 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:00.108 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:00.108 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:00.108 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:00.108 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:00.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:00.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:00.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:00.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:00.118 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:00.128 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:25:00.128 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:25:00.128 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:00.328 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:00.528 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:00.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:00.528 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:00.528 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:00.718 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:00.718 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:00.718 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:25:01.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:25:01.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:01.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:01.118 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:25:01.318 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:01.388 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:01.388 -07 000000431 INF: Scanning Z-Position: -0.14303
17-03-17 17:25:01.388 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:01.388 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:01.398 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:01.398 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:01.498 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:01.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:01.598 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:01.598 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:01.598 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31245, sync = True, waitForSettling = True)
17-03-17 17:25:01.598 -07 000000431 INF: Z Motor: Moving to -0.143030 mm, started at -0.149541 mm, distance = 6.51 um
17-03-17 17:25:01.598 -07 000000431 INF: FPGA: Xmit ZDACW 31245\n [Z Motor]
17-03-17 17:25:01.608 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:25:01.608 -07 000000431 INF: FPGA: 'ZDACW 31245' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 17:25:01.608 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:01.608 -07 000000627 INF: FPGA: Recv ZDACR 31245
17-03-17 17:25:01.618 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:01.618 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:01.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.768 -07 000000424 INF: FPGA: Recv ZSGSRD 31551
17-03-17 17:25:01.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:01.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.778 -07 000000627 INF: FPGA: Recv ZSGSRD 31556
17-03-17 17:25:01.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.788 -07 000000429 INF: FPGA: Recv ZSGSRD 31549
17-03-17 17:25:01.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.798 -07 000000569 INF: FPGA: Recv ZSGSRD 31556
17-03-17 17:25:01.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.808 -07 000000433 INF: FPGA: Recv ZSGSRD 31553
17-03-17 17:25:01.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.818 -07 000000569 INF: FPGA: Recv ZSGSRD 31555
17-03-17 17:25:01.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.828 -07 000000627 INF: FPGA: Recv ZSGSRD 31556
17-03-17 17:25:01.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.838 -07 000000433 INF: FPGA: Recv ZSGSRD 31558
17-03-17 17:25:01.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.848 -07 000000429 INF: FPGA: Recv ZSGSRD 31547
17-03-17 17:25:01.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:01.858 -07 000000569 INF: FPGA: Recv ZSGSRD 31553
17-03-17 17:25:01.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.868 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:01.868 -07 000000627 INF: FPGA: Recv ZPIEZORD 28167
17-03-17 17:25:01.878 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:01.878 -07 000000431 INF: Z Motor: Piezo is near 40.2 V (nominally 0 to 100 V), expect near 47.7 V, since DAC is at 4.768 V. Piezo Error = -7.5 V.
17-03-17 17:25:01.878 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -143.0 um, Read 10 ADC samples: Avg = 31553 (-142.2 uncal um), Error = 0.8 uncal um, Median = 31554 (-142.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31547 (-142.2 uncal um), Max = 31558 (-142.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:01.878 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31553, posNoise = 5, negNoise = 6
17-03-17 17:25:01.878 -07 000000431 INF: Z Motor: After move to -0.143030, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:01.878 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:01.878 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:01.878 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:01.878 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:01.878 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:01.878 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:01.878 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:01.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:01.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:01.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:01.888 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:01.898 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:01.898 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:01.898 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:02.098 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:02.298 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:02.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:02.298 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:02.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:25:02.488 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:02.488 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:02.488 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 592 ms overall
17-03-17 17:25:02.888 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:25:02.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:02.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:02.888 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:25:02.988 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:02.998 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:02.998 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:03.008 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:25:03.008 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:03.208 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:03.208 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:03.208 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32556, sync = True, waitForSettling = True)
17-03-17 17:25:03.208 -07 000000431 INF: Z Motor: Moving to -0.149032 mm, started at -0.143027 mm, distance = -6.01 um
17-03-17 17:25:03.208 -07 000000431 INF: FPGA: Xmit ZDACW 32556\n [Z Motor]
17-03-17 17:25:03.208 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:25:03.218 -07 000000431 INF: FPGA: 'ZDACW 32556' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:03.218 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:03.218 -07 000000438 INF: FPGA: Recv ZDACR 32556
17-03-17 17:25:03.228 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.228 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:03.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.378 -07 000000438 INF: FPGA: Recv ZSGSRD 32490
17-03-17 17:25:03.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:03.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.388 -07 000000458 INF: FPGA: Recv ZSGSRD 32491
17-03-17 17:25:03.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.398 -07 000000569 INF: FPGA: Recv ZSGSRD 32488
17-03-17 17:25:03.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.408 -07 000000627 INF: FPGA: Recv ZSGSRD 32493
17-03-17 17:25:03.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.418 -07 000000438 INF: FPGA: Recv ZSGSRD 32490
17-03-17 17:25:03.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.428 -07 000000627 INF: FPGA: Recv ZSGSRD 32482
17-03-17 17:25:03.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.438 -07 000000438 INF: FPGA: Recv ZSGSRD 32491
17-03-17 17:25:03.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.448 -07 000000627 INF: FPGA: Recv ZSGSRD 32490
17-03-17 17:25:03.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.458 -07 000000438 INF: FPGA: Recv ZSGSRD 32491
17-03-17 17:25:03.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:03.468 -07 000000502 INF: FPGA: Recv ZSGSRD 32491
17-03-17 17:25:03.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.478 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:03.478 -07 000000438 INF: FPGA: Recv ZPIEZORD 29395
17-03-17 17:25:03.488 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:03.488 -07 000000431 INF: Z Motor: Piezo is near 42.8 V (nominally 0 to 100 V), expect near 49.7 V, since DAC is at 4.968 V. Piezo Error = -6.9 V.
17-03-17 17:25:03.488 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -149.0 um, Read 10 ADC samples: Avg = 32490 (-148.2 uncal um), Error = 0.8 uncal um, Median = 32490 (-148.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 32482 (-148.2 uncal um), Max = 32493 (-148.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:25:03.488 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32490, posNoise = 3, negNoise = 8
17-03-17 17:25:03.488 -07 000000431 INF: Z Motor: After move to -0.149032, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:03.488 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:03.488 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:03.488 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:03.488 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:03.488 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:03.488 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:03.488 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:03.488 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:03.488 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:03.498 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:25:03.498 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:03.508 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:03.508 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 18 ms.
17-03-17 17:25:03.508 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:03.708 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:03.908 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:03.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:03.908 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:03.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:25:03.928 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.02213,
17-03-17 17:25:04.098 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:04.098 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:04.098 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:25:04.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:25:04.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:04.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:04.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:25:04.808 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:04.878 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:04.878 -07 000000431 INF: Scanning Z-Position: -0.14253
17-03-17 17:25:04.878 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:04.878 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:04.888 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:25:04.888 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:05.088 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:05.088 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:05.088 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31136, sync = True, waitForSettling = True)
17-03-17 17:25:05.088 -07 000000431 INF: Z Motor: Moving to -0.142531 mm, started at -0.149046 mm, distance = 6.51 um
17-03-17 17:25:05.088 -07 000000431 INF: FPGA: Xmit ZDACW 31136\n [Z Motor]
17-03-17 17:25:05.088 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:25:05.098 -07 000000431 INF: FPGA: 'ZDACW 31136' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:05.098 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:05.098 -07 000000429 INF: FPGA: Recv ZDACR 31136
17-03-17 17:25:05.108 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.108 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:05.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.258 -07 000000569 INF: FPGA: Recv ZSGSRD 31479
17-03-17 17:25:05.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.268 -07 000000541 INF: FPGA: Recv ZSGSRD 31478
17-03-17 17:25:05.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.278 -07 000000458 INF: FPGA: Recv ZSGSRD 31480
17-03-17 17:25:05.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.288 -07 000000627 INF: FPGA: Recv ZSGSRD 31481
17-03-17 17:25:05.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.298 -07 000000438 INF: FPGA: Recv ZSGSRD 31485
17-03-17 17:25:05.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.308 -07 000000541 INF: FPGA: Recv ZSGSRD 31477
17-03-17 17:25:05.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.318 -07 000000627 INF: FPGA: Recv ZSGSRD 31477
17-03-17 17:25:05.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.328 -07 000000429 INF: FPGA: Recv ZSGSRD 31474
17-03-17 17:25:05.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:05.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.338 -07 000000627 INF: FPGA: Recv ZSGSRD 31480
17-03-17 17:25:05.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:05.348 -07 000000569 INF: FPGA: Recv ZSGSRD 31480
17-03-17 17:25:05.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.358 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:05.358 -07 000000458 INF: FPGA: Recv ZPIEZORD 28037
17-03-17 17:25:05.368 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:05.368 -07 000000431 INF: Z Motor: Piezo is near 39.9 V (nominally 0 to 100 V), expect near 47.5 V, since DAC is at 4.751 V. Piezo Error = -7.6 V.
17-03-17 17:25:05.368 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -142.5 um, Read 10 ADC samples: Avg = 31479 (-141.7 uncal um), Error = 0.8 uncal um, Median = 31480 (-141.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31474 (-141.7 uncal um), Max = 31485 (-141.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:05.368 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31479, posNoise = 6, negNoise = 5
17-03-17 17:25:05.368 -07 000000431 INF: Z Motor: After move to -0.142531, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:05.368 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:05.368 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:05.368 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:05.368 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:05.368 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:05.368 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:05.368 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:05.368 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:05.368 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:05.378 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:05.378 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:05.388 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:25:05.388 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:25:05.388 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:05.588 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:05.788 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:05.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:05.788 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:05.788 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:05.978 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:05.978 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:05.978 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:25:06.368 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:25:06.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:06.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:06.378 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:25:06.498 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:06.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:06.578 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:06.588 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:06.588 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:06.598 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:06.598 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:06.798 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:06.798 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:06.798 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32446, sync = True, waitForSettling = True)
17-03-17 17:25:06.798 -07 000000431 INF: Z Motor: Moving to -0.148528 mm, started at -0.142551 mm, distance = -5.98 um
17-03-17 17:25:06.798 -07 000000431 INF: FPGA: Xmit ZDACW 32446\n [Z Motor]
17-03-17 17:25:06.798 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:25:06.808 -07 000000431 INF: FPGA: 'ZDACW 32446' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:25:06.808 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:06.808 -07 000000458 INF: FPGA: Recv ZDACR 32446
17-03-17 17:25:06.818 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:06.818 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:06.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:06.968 -07 000000438 INF: FPGA: Recv ZSGSRD 32414
17-03-17 17:25:06.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:06.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:06.978 -07 000000458 INF: FPGA: Recv ZSGSRD 32413
17-03-17 17:25:06.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:06.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:06.988 -07 000000541 INF: FPGA: Recv ZSGSRD 32410
17-03-17 17:25:06.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:06.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:06.998 -07 000000429 INF: FPGA: Recv ZSGSRD 32411
17-03-17 17:25:07.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:07.008 -07 000000424 INF: FPGA: Recv ZSGSRD 32419
17-03-17 17:25:07.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:07.018 -07 000000569 INF: FPGA: Recv ZSGSRD 32414
17-03-17 17:25:07.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:07.028 -07 000000438 INF: FPGA: Recv ZSGSRD 32409
17-03-17 17:25:07.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:07.038 -07 000000458 INF: FPGA: Recv ZSGSRD 32415
17-03-17 17:25:07.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:07.048 -07 000000632 INF: FPGA: Recv ZSGSRD 32415
17-03-17 17:25:07.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:07.058 -07 000000627 INF: FPGA: Recv ZSGSRD 32407
17-03-17 17:25:07.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.068 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:07.068 -07 000000424 INF: FPGA: Recv ZPIEZORD 29272
17-03-17 17:25:07.078 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:07.078 -07 000000431 INF: Z Motor: Piezo is near 42.5 V (nominally 0 to 100 V), expect near 49.5 V, since DAC is at 4.951 V. Piezo Error = -7.0 V.
17-03-17 17:25:07.078 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -148.5 um, Read 10 ADC samples: Avg = 32413 (-147.7 uncal um), Error = 0.8 uncal um, Median = 32414 (-147.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 32407 (-147.7 uncal um), Max = 32419 (-147.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:07.078 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32413, posNoise = 6, negNoise = 6
17-03-17 17:25:07.078 -07 000000431 INF: Z Motor: After move to -0.148528, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:07.078 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:07.078 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:07.078 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:07.078 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:07.078 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:07.078 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:07.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:07.088 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:07.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:07.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:07.088 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:07.098 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:07.098 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:07.098 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:07.298 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:07.498 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:07.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:07.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:07.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:07.688 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:07.688 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:07.688 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:25:08.088 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:25:08.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:08.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:08.088 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:08.288 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:08.458 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:08.458 -07 000000431 INF: Scanning Z-Position: -0.14203
17-03-17 17:25:08.458 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:08.468 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:08.468 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:25:08.468 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:08.668 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:08.668 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:25:08.668 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31026, sync = True, waitForSettling = True)
17-03-17 17:25:08.668 -07 000000431 INF: Z Motor: Moving to -0.142028 mm, started at -0.148551 mm, distance = 6.52 um
17-03-17 17:25:08.668 -07 000000431 INF: FPGA: Xmit ZDACW 31026\n [Z Motor]
17-03-17 17:25:08.678 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:25:08.678 -07 000000431 INF: FPGA: 'ZDACW 31026' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:08.678 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:08.678 -07 000000569 INF: FPGA: Recv ZDACR 31026
17-03-17 17:25:08.688 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:08.688 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:08.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.838 -07 000000438 INF: FPGA: Recv ZSGSRD 31396
17-03-17 17:25:08.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:08.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.848 -07 000000632 INF: FPGA: Recv ZSGSRD 31397
17-03-17 17:25:08.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.858 -07 000000569 INF: FPGA: Recv ZSGSRD 31398
17-03-17 17:25:08.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.868 -07 000000627 INF: FPGA: Recv ZSGSRD 31400
17-03-17 17:25:08.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.878 -07 000000429 INF: FPGA: Recv ZSGSRD 31400
17-03-17 17:25:08.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:08.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.888 -07 000000632 INF: FPGA: Recv ZSGSRD 31402
17-03-17 17:25:08.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.898 -07 000000424 INF: FPGA: Recv ZSGSRD 31405
17-03-17 17:25:08.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.908 -07 000000627 INF: FPGA: Recv ZSGSRD 31395
17-03-17 17:25:08.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.918 -07 000000424 INF: FPGA: Recv ZSGSRD 31397
17-03-17 17:25:08.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:08.928 -07 000000438 INF: FPGA: Recv ZSGSRD 31398
17-03-17 17:25:08.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:08.938 -07 000000541 INF: FPGA: Recv ZPIEZORD 27925
17-03-17 17:25:08.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:08.948 -07 000000431 INF: Z Motor: Piezo is near 39.7 V (nominally 0 to 100 V), expect near 47.3 V, since DAC is at 4.734 V. Piezo Error = -7.7 V.
17-03-17 17:25:08.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -142.0 um, Read 10 ADC samples: Avg = 31399 (-141.2 uncal um), Error = 0.8 uncal um, Median = 31398 (-141.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31395 (-141.2 uncal um), Max = 31405 (-141.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:25:08.948 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31399, posNoise = 6, negNoise = 4
17-03-17 17:25:08.948 -07 000000431 INF: Z Motor: After move to -0.142028, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:08.948 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:25:08.948 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:08.948 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:08.948 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:08.948 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:08.948 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:08.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:08.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:08.948 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:08.958 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:25:08.958 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:08.968 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:25:08.968 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:08.998 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:09.188 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:09.308 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.049392,
17-03-17 17:25:09.388 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:09.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:09.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:09.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:09.578 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:09.578 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:09.578 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 613 ms overall
17-03-17 17:25:09.978 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:25:09.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:09.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:09.978 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:10.188 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:10.198 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:10.198 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:10.208 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:25:10.208 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:10.408 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:10.408 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 17:25:10.408 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32337, sync = True, waitForSettling = True)
17-03-17 17:25:10.408 -07 000000431 INF: Z Motor: Moving to -0.148029 mm, started at -0.142037 mm, distance = -5.99 um
17-03-17 17:25:10.408 -07 000000431 INF: FPGA: Xmit ZDACW 32337\n [Z Motor]
17-03-17 17:25:10.418 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:25:10.418 -07 000000431 INF: FPGA: 'ZDACW 32337' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:10.418 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:10.418 -07 000000541 INF: FPGA: Recv ZDACR 32337
17-03-17 17:25:10.428 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.428 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:10.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.578 -07 000000627 INF: FPGA: Recv ZSGSRD 32332
17-03-17 17:25:10.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:10.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.588 -07 000000429 INF: FPGA: Recv ZSGSRD 32337
17-03-17 17:25:10.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.598 -07 000000424 INF: FPGA: Recv ZSGSRD 32332
17-03-17 17:25:10.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.608 -07 000000541 INF: FPGA: Recv ZSGSRD 32333
17-03-17 17:25:10.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.618 -07 000000627 INF: FPGA: Recv ZSGSRD 32337
17-03-17 17:25:10.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.628 -07 000000541 INF: FPGA: Recv ZSGSRD 32332
17-03-17 17:25:10.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.638 -07 000000569 INF: FPGA: Recv ZSGSRD 32328
17-03-17 17:25:10.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.648 -07 000000429 INF: FPGA: Recv ZSGSRD 32332
17-03-17 17:25:10.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.658 -07 000000569 INF: FPGA: Recv ZSGSRD 32331
17-03-17 17:25:10.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:10.668 -07 000000541 INF: FPGA: Recv ZSGSRD 32333
17-03-17 17:25:10.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.678 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:10.678 -07 000000627 INF: FPGA: Recv ZPIEZORD 29176
17-03-17 17:25:10.688 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:10.688 -07 000000431 INF: Z Motor: Piezo is near 42.3 V (nominally 0 to 100 V), expect near 49.3 V, since DAC is at 4.934 V. Piezo Error = -7.0 V.
17-03-17 17:25:10.688 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -148.0 um, Read 10 ADC samples: Avg = 32333 (-147.2 uncal um), Error = 0.8 uncal um, Median = 32332 (-147.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 32328 (-147.2 uncal um), Max = 32337 (-147.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:10.688 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32333, posNoise = 4, negNoise = 5
17-03-17 17:25:10.688 -07 000000431 INF: Z Motor: After move to -0.148029, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:10.688 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:25:10.688 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:10.688 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:10.688 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:10.688 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:10.688 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:10.688 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:10.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:10.698 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:10.698 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:10.698 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:10.708 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:25:10.708 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:25:10.708 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:10.908 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:25:11.108 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:25:11.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:25:11.108 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:11.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:11.298 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:11.298 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:11.298 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:25:11.498 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:11.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:25:11.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:11.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:11.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:25:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:11.898 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:11.958 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:11.958 -07 000000431 INF: Scanning Z-Position: -0.14153
17-03-17 17:25:11.968 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:11.968 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:11.978 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:11.978 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:12.178 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:12.178 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:12.178 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30917, sync = True, waitForSettling = True)
17-03-17 17:25:12.178 -07 000000431 INF: Z Motor: Moving to -0.141529 mm, started at -0.148037 mm, distance = 6.51 um
17-03-17 17:25:12.178 -07 000000431 INF: FPGA: Xmit ZDACW 30917\n [Z Motor]
17-03-17 17:25:12.178 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:25:12.188 -07 000000431 INF: FPGA: 'ZDACW 30917' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:25:12.188 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:12.188 -07 000000627 INF: FPGA: Recv ZDACR 30917
17-03-17 17:25:12.198 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.198 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:12.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.348 -07 000000480 INF: FPGA: Recv ZSGSRD 31324
17-03-17 17:25:12.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:12.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.358 -07 000000502 INF: FPGA: Recv ZSGSRD 31318
17-03-17 17:25:12.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.368 -07 000000632 INF: FPGA: Recv ZSGSRD 31323
17-03-17 17:25:12.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.378 -07 000000429 INF: FPGA: Recv ZSGSRD 31323
17-03-17 17:25:12.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.388 -07 000000569 INF: FPGA: Recv ZSGSRD 31319
17-03-17 17:25:12.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.398 -07 000000502 INF: FPGA: Recv ZSGSRD 31319
17-03-17 17:25:12.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.408 -07 000000438 INF: FPGA: Recv ZSGSRD 31325
17-03-17 17:25:12.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.418 -07 000000618 INF: FPGA: Recv ZSGSRD 31323
17-03-17 17:25:12.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.428 -07 000000438 INF: FPGA: Recv ZSGSRD 31316
17-03-17 17:25:12.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:12.438 -07 000000541 INF: FPGA: Recv ZSGSRD 31318
17-03-17 17:25:12.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.448 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:12.448 -07 000000433 INF: FPGA: Recv ZPIEZORD 27814
17-03-17 17:25:12.458 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:12.458 -07 000000431 INF: Z Motor: Piezo is near 39.4 V (nominally 0 to 100 V), expect near 47.2 V, since DAC is at 4.718 V. Piezo Error = -7.8 V.
17-03-17 17:25:12.458 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -141.5 um, Read 10 ADC samples: Avg = 31321 (-140.7 uncal um), Error = 0.8 uncal um, Median = 31321 (-140.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31316 (-140.7 uncal um), Max = 31325 (-140.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:12.458 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31321, posNoise = 4, negNoise = 5
17-03-17 17:25:12.458 -07 000000431 INF: Z Motor: After move to -0.141529, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:12.458 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:12.458 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:12.458 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:12.458 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:12.458 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:12.458 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:12.458 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:12.468 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:25:12.468 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:12.468 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:12.468 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:12.478 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:12.478 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:12.478 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:12.678 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:12.878 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:12.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:12.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:12.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:25:13.068 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:13.068 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:13.068 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:25:13.468 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:25:13.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:13.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:13.468 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:25:13.778 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:13.788 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:13.788 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:13.798 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:13.798 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:13.998 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:13.998 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:13.998 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32228, sync = True, waitForSettling = True)
17-03-17 17:25:13.998 -07 000000431 INF: Z Motor: Moving to -0.147530 mm, started at -0.141536 mm, distance = -5.99 um
17-03-17 17:25:13.998 -07 000000431 INF: FPGA: Xmit ZDACW 32228\n [Z Motor]
17-03-17 17:25:13.998 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:25:14.008 -07 000000431 INF: FPGA: 'ZDACW 32228' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:14.008 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:14.008 -07 000000480 INF: FPGA: Recv ZDACR 32228
17-03-17 17:25:14.018 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.018 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:14.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.168 -07 000000438 INF: FPGA: Recv ZSGSRD 32257
17-03-17 17:25:14.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:14.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.178 -07 000000480 INF: FPGA: Recv ZSGSRD 32260
17-03-17 17:25:14.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.188 -07 000000382 INF: FPGA: Recv ZSGSRD 32263
17-03-17 17:25:14.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.198 -07 000000502 INF: FPGA: Recv ZSGSRD 32252
17-03-17 17:25:14.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.208 -07 000000433 INF: FPGA: Recv ZSGSRD 32252
17-03-17 17:25:14.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.218 -07 000000480 INF: FPGA: Recv ZSGSRD 32255
17-03-17 17:25:14.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.228 -07 000000541 INF: FPGA: Recv ZSGSRD 32254
17-03-17 17:25:14.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.238 -07 000000502 INF: FPGA: Recv ZSGSRD 32251
17-03-17 17:25:14.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.248 -07 000000433 INF: FPGA: Recv ZSGSRD 32256
17-03-17 17:25:14.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:14.258 -07 000000561 INF: FPGA: Recv ZSGSRD 32261
17-03-17 17:25:14.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.268 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:14.268 -07 000000433 INF: FPGA: Recv ZPIEZORD 29101
17-03-17 17:25:14.278 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:14.278 -07 000000431 INF: Z Motor: Piezo is near 42.2 V (nominally 0 to 100 V), expect near 49.2 V, since DAC is at 4.918 V. Piezo Error = -7.0 V.
17-03-17 17:25:14.278 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -147.5 um, Read 10 ADC samples: Avg = 32256 (-146.7 uncal um), Error = 0.8 uncal um, Median = 32256 (-146.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 32251 (-146.7 uncal um), Max = 32263 (-146.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:14.278 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32256, posNoise = 7, negNoise = 5
17-03-17 17:25:14.278 -07 000000431 INF: Z Motor: After move to -0.147530, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:14.278 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:25:14.278 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:14.278 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:14.278 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:14.278 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:14.278 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:14.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:14.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:14.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:14.288 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:25:14.288 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:14.298 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:14.298 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:25:14.298 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:14.498 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:14.678 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.028963,
17-03-17 17:25:14.698 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:14.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:14.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:14.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:25:14.888 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:14.888 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:14.888 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:25:15.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:25:15.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:15.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:15.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:15.488 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:15.558 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:15.558 -07 000000431 INF: Scanning Z-Position: -0.14103
17-03-17 17:25:15.558 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:15.558 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:15.568 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:15.568 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:15.768 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:15.768 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:15.768 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30808, sync = True, waitForSettling = True)
17-03-17 17:25:15.768 -07 000000431 INF: Z Motor: Moving to -0.141030 mm, started at -0.147543 mm, distance = 6.51 um
17-03-17 17:25:15.768 -07 000000431 INF: FPGA: Xmit ZDACW 30808\n [Z Motor]
17-03-17 17:25:15.768 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:25:15.778 -07 000000431 INF: FPGA: 'ZDACW 30808' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:15.778 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:15.778 -07 000000438 INF: FPGA: Recv ZDACR 30808
17-03-17 17:25:15.788 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:15.788 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:15.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:15.938 -07 000000382 INF: FPGA: Recv ZSGSRD 31250
17-03-17 17:25:15.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:15.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:15.948 -07 000000618 INF: FPGA: Recv ZSGSRD 31244
17-03-17 17:25:15.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:15.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:15.958 -07 000000561 INF: FPGA: Recv ZSGSRD 31243
17-03-17 17:25:15.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:15.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:15.968 -07 000000502 INF: FPGA: Recv ZSGSRD 31245
17-03-17 17:25:15.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:15.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:15.978 -07 000000433 INF: FPGA: Recv ZSGSRD 31241
17-03-17 17:25:15.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:15.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:15.988 -07 000000502 INF: FPGA: Recv ZSGSRD 31247
17-03-17 17:25:15.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:15.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:15.998 -07 000000382 INF: FPGA: Recv ZSGSRD 31242
17-03-17 17:25:16.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:16.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:16.008 -07 000000438 INF: FPGA: Recv ZSGSRD 31238
17-03-17 17:25:16.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:16.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:16.018 -07 000000433 INF: FPGA: Recv ZSGSRD 31245
17-03-17 17:25:16.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:16.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:16.028 -07 000000561 INF: FPGA: Recv ZSGSRD 31244
17-03-17 17:25:16.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:16.038 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:16.038 -07 000000480 INF: FPGA: Recv ZPIEZORD 27732
17-03-17 17:25:16.048 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:16.048 -07 000000431 INF: Z Motor: Piezo is near 39.2 V (nominally 0 to 100 V), expect near 47.0 V, since DAC is at 4.701 V. Piezo Error = -7.8 V.
17-03-17 17:25:16.048 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -141.0 um, Read 10 ADC samples: Avg = 31244 (-140.2 uncal um), Error = 0.8 uncal um, Median = 31244 (-140.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31238 (-140.2 uncal um), Max = 31250 (-140.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:16.048 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31244, posNoise = 6, negNoise = 6
17-03-17 17:25:16.048 -07 000000431 INF: Z Motor: After move to -0.141030, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:16.048 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:16.048 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:16.048 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:16.048 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:16.048 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:16.048 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:16.048 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:16.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:16.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:16.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:25:16.058 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:16.068 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:16.068 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:25:16.068 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:16.268 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:16.468 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:16.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:16.468 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:16.468 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:16.498 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:16.658 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:16.658 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:16.658 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:25:17.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:25:17.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:17.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:17.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:17.178 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:17.368 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:17.378 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:17.378 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:17.388 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:17.388 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:17.588 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:17.588 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:17.588 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32119, sync = True, waitForSettling = True)
17-03-17 17:25:17.588 -07 000000431 INF: Z Motor: Moving to -0.147031 mm, started at -0.141041 mm, distance = -5.99 um
17-03-17 17:25:17.588 -07 000000431 INF: FPGA: Xmit ZDACW 32119\n [Z Motor]
17-03-17 17:25:17.588 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:25:17.598 -07 000000431 INF: FPGA: 'ZDACW 32119' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:17.598 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:17.598 -07 000000433 INF: FPGA: Recv ZDACR 32119
17-03-17 17:25:17.608 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.608 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:17.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.758 -07 000000382 INF: FPGA: Recv ZSGSRD 32178
17-03-17 17:25:17.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:17.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.768 -07 000000433 INF: FPGA: Recv ZSGSRD 32177
17-03-17 17:25:17.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.778 -07 000000438 INF: FPGA: Recv ZSGSRD 32183
17-03-17 17:25:17.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.788 -07 000000480 INF: FPGA: Recv ZSGSRD 32177
17-03-17 17:25:17.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.798 -07 000000541 INF: FPGA: Recv ZSGSRD 32180
17-03-17 17:25:17.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.808 -07 000000433 INF: FPGA: Recv ZSGSRD 32176
17-03-17 17:25:17.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.818 -07 000000382 INF: FPGA: Recv ZSGSRD 32174
17-03-17 17:25:17.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.828 -07 000000561 INF: FPGA: Recv ZSGSRD 32184
17-03-17 17:25:17.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.838 -07 000000541 INF: FPGA: Recv ZSGSRD 32178
17-03-17 17:25:17.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:17.848 -07 000000480 INF: FPGA: Recv ZSGSRD 32180
17-03-17 17:25:17.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.858 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:17.858 -07 000000541 INF: FPGA: Recv ZPIEZORD 28990
17-03-17 17:25:17.868 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:17.868 -07 000000431 INF: Z Motor: Piezo is near 41.9 V (nominally 0 to 100 V), expect near 49.0 V, since DAC is at 4.901 V. Piezo Error = -7.1 V.
17-03-17 17:25:17.868 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -147.0 um, Read 10 ADC samples: Avg = 32179 (-146.2 uncal um), Error = 0.8 uncal um, Median = 32178 (-146.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 32174 (-146.2 uncal um), Max = 32184 (-146.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:17.868 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32179, posNoise = 5, negNoise = 5
17-03-17 17:25:17.868 -07 000000431 INF: Z Motor: After move to -0.147031, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:17.868 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:17.868 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:17.868 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:17.868 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:17.868 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:17.868 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:17.868 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:17.878 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:17.878 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:17.878 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:17.878 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:17.888 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 7 ms.
17-03-17 17:25:17.888 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 11 ms.
17-03-17 17:25:17.888 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:18.088 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:18.288 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:18.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:18.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:18.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:25:18.478 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:18.478 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:18.478 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:25:18.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:25:18.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:18.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:18.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:25:19.078 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:19.148 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:19.148 -07 000000431 INF: Scanning Z-Position: -0.14053
17-03-17 17:25:19.148 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:19.148 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:19.158 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:19.158 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:19.358 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:19.358 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:19.358 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30699, sync = True, waitForSettling = True)
17-03-17 17:25:19.358 -07 000000431 INF: Z Motor: Moving to -0.140531 mm, started at -0.147048 mm, distance = 6.52 um
17-03-17 17:25:19.358 -07 000000431 INF: FPGA: Xmit ZDACW 30699\n [Z Motor]
17-03-17 17:25:19.358 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:25:19.368 -07 000000431 INF: FPGA: 'ZDACW 30699' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:25:19.368 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:19.368 -07 000000382 INF: FPGA: Recv ZDACR 30699
17-03-17 17:25:19.378 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.378 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:19.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.528 -07 000000433 INF: FPGA: Recv ZSGSRD 31170
17-03-17 17:25:19.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:19.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.538 -07 000000561 INF: FPGA: Recv ZSGSRD 31166
17-03-17 17:25:19.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.548 -07 000000541 INF: FPGA: Recv ZSGSRD 31164
17-03-17 17:25:19.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.558 -07 000000382 INF: FPGA: Recv ZSGSRD 31168
17-03-17 17:25:19.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.568 -07 000000502 INF: FPGA: Recv ZSGSRD 31165
17-03-17 17:25:19.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.578 -07 000000618 INF: FPGA: Recv ZSGSRD 31167
17-03-17 17:25:19.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.588 -07 000000561 INF: FPGA: Recv ZSGSRD 31169
17-03-17 17:25:19.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.598 -07 000000541 INF: FPGA: Recv ZSGSRD 31166
17-03-17 17:25:19.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.608 -07 000000433 INF: FPGA: Recv ZSGSRD 31172
17-03-17 17:25:19.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:19.618 -07 000000480 INF: FPGA: Recv ZSGSRD 31162
17-03-17 17:25:19.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:19.628 -07 000000502 INF: FPGA: Recv ZPIEZORD 27633
17-03-17 17:25:19.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:19.638 -07 000000431 INF: Z Motor: Piezo is near 39.0 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.684 V. Piezo Error = -7.8 V.
17-03-17 17:25:19.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31167 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31166 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31162 (-139.7 uncal um), Max = 31172 (-139.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:19.638 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31167, posNoise = 5, negNoise = 5
17-03-17 17:25:19.638 -07 000000431 INF: Z Motor: After move to -0.140531, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:19.638 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:19.638 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:19.638 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:19.638 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:19.638 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:19.638 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:19.638 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:19.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:25:19.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:19.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:19.648 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:19.658 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:25:19.658 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:25:19.658 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:19.858 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:20.058 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.039839,
17-03-17 17:25:20.058 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:20.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:20.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:20.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:20.248 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:20.248 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:20.248 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:25:20.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:25:20.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:20.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:20.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:20.848 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:20.858 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:20.858 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:20.868 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:20.868 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:21.068 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:21.068 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:21.068 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 32009, sync = True, waitForSettling = True)
17-03-17 17:25:21.068 -07 000000431 INF: Z Motor: Moving to -0.146528 mm, started at -0.140547 mm, distance = -5.98 um
17-03-17 17:25:21.068 -07 000000431 INF: FPGA: Xmit ZDACW 32009\n [Z Motor]
17-03-17 17:25:21.068 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:25:21.078 -07 000000431 INF: FPGA: 'ZDACW 32009' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:21.078 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:21.078 -07 000000561 INF: FPGA: Recv ZDACR 32009
17-03-17 17:25:21.088 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.088 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:21.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.238 -07 000000502 INF: FPGA: Recv ZSGSRD 32099
17-03-17 17:25:21.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:21.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.248 -07 000000541 INF: FPGA: Recv ZSGSRD 32099
17-03-17 17:25:21.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.258 -07 000000433 INF: FPGA: Recv ZSGSRD 32105
17-03-17 17:25:21.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:25:21.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.268 -07 000000480 INF: FPGA: Recv ZSGSRD 32105
17-03-17 17:25:21.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.278 -07 000000433 INF: FPGA: Recv ZSGSRD 32099
17-03-17 17:25:21.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.288 -07 000000561 INF: FPGA: Recv ZSGSRD 32098
17-03-17 17:25:21.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.298 -07 000000433 INF: FPGA: Recv ZSGSRD 32101
17-03-17 17:25:21.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.308 -07 000000502 INF: FPGA: Recv ZSGSRD 32100
17-03-17 17:25:21.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.318 -07 000000438 INF: FPGA: Recv ZSGSRD 32096
17-03-17 17:25:21.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:21.328 -07 000000382 INF: FPGA: Recv ZSGSRD 32101
17-03-17 17:25:21.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.338 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:21.338 -07 000000438 INF: FPGA: Recv ZPIEZORD 28911
17-03-17 17:25:21.348 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:21.348 -07 000000431 INF: Z Motor: Piezo is near 41.8 V (nominally 0 to 100 V), expect near 48.8 V, since DAC is at 4.884 V. Piezo Error = -7.1 V.
17-03-17 17:25:21.348 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -146.5 um, Read 10 ADC samples: Avg = 32100 (-145.7 uncal um), Error = 0.8 uncal um, Median = 32100 (-145.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 32096 (-145.7 uncal um), Max = 32105 (-145.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:25:21.348 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32100, posNoise = 5, negNoise = 4
17-03-17 17:25:21.348 -07 000000431 INF: Z Motor: After move to -0.146528, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:21.348 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:21.348 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:21.348 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:21.348 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:21.348 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:21.348 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:21.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:21.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:21.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:21.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:21.358 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:21.368 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:21.368 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:25:21.368 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:21.498 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:21.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:21.568 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:21.768 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:21.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:21.768 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:21.768 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:25:21.958 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:21.958 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:21.958 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:25:22.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:25:22.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:22.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:22.358 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:22.568 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:22.638 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:22.638 -07 000000431 INF: Scanning Z-Position: -0.14003
17-03-17 17:25:22.638 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:22.638 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:22.648 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:22.648 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:22.848 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:22.848 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:22.848 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30590, sync = True, waitForSettling = True)
17-03-17 17:25:22.848 -07 000000431 INF: Z Motor: Moving to -0.140032 mm, started at -0.146541 mm, distance = 6.51 um
17-03-17 17:25:22.848 -07 000000431 INF: FPGA: Xmit ZDACW 30590\n [Z Motor]
17-03-17 17:25:22.858 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:25:22.858 -07 000000431 INF: FPGA: 'ZDACW 30590' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:22.858 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:22.858 -07 000000541 INF: FPGA: Recv ZDACR 30590
17-03-17 17:25:22.868 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:22.868 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:23.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.018 -07 000000382 INF: FPGA: Recv ZSGSRD 31088
17-03-17 17:25:23.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:23.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.028 -07 000000480 INF: FPGA: Recv ZSGSRD 31089
17-03-17 17:25:23.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.038 -07 000000561 INF: FPGA: Recv ZSGSRD 31089
17-03-17 17:25:23.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.048 -07 000000502 INF: FPGA: Recv ZSGSRD 31096
17-03-17 17:25:23.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.058 -07 000000433 INF: FPGA: Recv ZSGSRD 31091
17-03-17 17:25:23.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.068 -07 000000382 INF: FPGA: Recv ZSGSRD 31086
17-03-17 17:25:23.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.078 -07 000000627 INF: FPGA: Recv ZSGSRD 31088
17-03-17 17:25:23.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.088 -07 000000382 INF: FPGA: Recv ZSGSRD 31084
17-03-17 17:25:23.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.098 -07 000000627 INF: FPGA: Recv ZSGSRD 31089
17-03-17 17:25:23.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:23.108 -07 000000433 INF: FPGA: Recv ZSGSRD 31092
17-03-17 17:25:23.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.118 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:23.118 -07 000000433 INF: FPGA: Recv ZPIEZORD 27537
17-03-17 17:25:23.128 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:23.128 -07 000000431 INF: Z Motor: Piezo is near 38.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.668 V. Piezo Error = -7.9 V.
17-03-17 17:25:23.128 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31089 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31089 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31084 (-139.2 uncal um), Max = 31096 (-139.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:23.128 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31089, posNoise = 7, negNoise = 5
17-03-17 17:25:23.128 -07 000000431 INF: Z Motor: After move to -0.140032, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:23.128 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:23.128 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:23.128 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:23.128 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:23.128 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:23.128 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:23.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:23.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:23.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:23.138 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:25:23.138 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:23.148 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:25:23.148 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:25:23.148 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:23.348 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:23.548 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:23.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:23.548 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:23.548 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:23.738 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:23.738 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:23.738 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall
17-03-17 17:25:24.128 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:25:24.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:24.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:24.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:24.338 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:24.348 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:24.348 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:24.358 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:24.358 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:24.558 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:24.558 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:24.558 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31900, sync = True, waitForSettling = True)
17-03-17 17:25:24.558 -07 000000431 INF: Z Motor: Moving to -0.146029 mm, started at -0.140046 mm, distance = -5.98 um
17-03-17 17:25:24.558 -07 000000431 INF: FPGA: Xmit ZDACW 31900\n [Z Motor]
17-03-17 17:25:24.558 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:25:24.568 -07 000000431 INF: FPGA: 'ZDACW 31900' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:25:24.568 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:24.568 -07 000000438 INF: FPGA: Recv ZDACR 31900
17-03-17 17:25:24.578 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.578 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:24.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.728 -07 000000502 INF: FPGA: Recv ZSGSRD 32023
17-03-17 17:25:24.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:24.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.738 -07 000000433 INF: FPGA: Recv ZSGSRD 32018
17-03-17 17:25:24.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.748 -07 000000424 INF: FPGA: Recv ZSGSRD 32023
17-03-17 17:25:24.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.758 -07 000000561 INF: FPGA: Recv ZSGSRD 32027
17-03-17 17:25:24.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.768 -07 000000502 INF: FPGA: Recv ZSGSRD 32019
17-03-17 17:25:24.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.788 -07 000000569 INF: FPGA: Recv ZSGSRD 32027
17-03-17 17:25:24.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:25:24.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.798 -07 000000561 INF: FPGA: Recv ZSGSRD 32024
17-03-17 17:25:24.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.808 -07 000000438 INF: FPGA: Recv ZSGSRD 32016
17-03-17 17:25:24.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.818 -07 000000424 INF: FPGA: Recv ZSGSRD 32018
17-03-17 17:25:24.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:24.828 -07 000000480 INF: FPGA: Recv ZSGSRD 32023
17-03-17 17:25:24.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.838 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:24.838 -07 000000502 INF: FPGA: Recv ZPIEZORD 28788
17-03-17 17:25:24.848 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:24.848 -07 000000431 INF: Z Motor: Piezo is near 41.5 V (nominally 0 to 100 V), expect near 48.7 V, since DAC is at 4.868 V. Piezo Error = -7.2 V.
17-03-17 17:25:24.848 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -146.0 um, Read 10 ADC samples: Avg = 32022 (-145.2 uncal um), Error = 0.8 uncal um, Median = 32023 (-145.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 32016 (-145.2 uncal um), Max = 32027 (-145.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:24.848 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32022, posNoise = 5, negNoise = 6
17-03-17 17:25:24.848 -07 000000431 INF: Z Motor: After move to -0.146029, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:24.848 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:25:24.848 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:24.848 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:24.848 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:24.848 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:24.848 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:24.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:24.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:24.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:24.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:24.858 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:24.868 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:24.868 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:24.868 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:25.068 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:25.268 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:25.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:25.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:25.268 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:25.418 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.008536,
17-03-17 17:25:25.458 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:25.458 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:25.458 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:25:25.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:25:25.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:25.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:25.858 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:25:25.958 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:26.128 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:26.128 -07 000000431 INF: Scanning Z-Position: -0.13953
17-03-17 17:25:26.128 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:26.138 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:26.148 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:26.148 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:26.348 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:26.348 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:26.348 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30480, sync = True, waitForSettling = True)
17-03-17 17:25:26.348 -07 000000431 INF: Z Motor: Moving to -0.139528 mm, started at -0.146039 mm, distance = 6.51 um
17-03-17 17:25:26.348 -07 000000431 INF: FPGA: Xmit ZDACW 30480\n [Z Motor]
17-03-17 17:25:26.358 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:25:26.358 -07 000000431 INF: FPGA: 'ZDACW 30480' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 17:25:26.358 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:26.358 -07 000000433 INF: FPGA: Recv ZDACR 30480
17-03-17 17:25:26.368 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:26.368 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:26.498 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:26.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:26.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.518 -07 000000458 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:25:26.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:26.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.528 -07 000000569 INF: FPGA: Recv ZSGSRD 31011
17-03-17 17:25:26.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.538 -07 000000502 INF: FPGA: Recv ZSGSRD 31008
17-03-17 17:25:26.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.548 -07 000000429 INF: FPGA: Recv ZSGSRD 31008
17-03-17 17:25:26.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.558 -07 000000458 INF: FPGA: Recv ZSGSRD 31018
17-03-17 17:25:26.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.568 -07 000000569 INF: FPGA: Recv ZSGSRD 31014
17-03-17 17:25:26.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.578 -07 000000502 INF: FPGA: Recv ZSGSRD 31008
17-03-17 17:25:26.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.588 -07 000000433 INF: FPGA: Recv ZSGSRD 31008
17-03-17 17:25:26.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.598 -07 000000433 INF: FPGA: Recv ZSGSRD 31011
17-03-17 17:25:26.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:26.608 -07 000000569 INF: FPGA: Recv ZSGSRD 31014
17-03-17 17:25:26.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.618 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:26.618 -07 000000429 INF: FPGA: Recv ZPIEZORD 27436
17-03-17 17:25:26.628 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:26.628 -07 000000431 INF: Z Motor: Piezo is near 38.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -7.9 V.
17-03-17 17:25:26.628 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31011 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31011 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31008 (-138.7 uncal um), Max = 31018 (-138.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:25:26.628 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31011, posNoise = 7, negNoise = 3
17-03-17 17:25:26.628 -07 000000431 INF: Z Motor: After move to -0.139528, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:26.628 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:26.628 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:26.628 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:26.628 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:26.628 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:26.628 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:26.628 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:26.628 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:25:26.638 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:26.638 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:26.638 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:26.648 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:25:26.648 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:26.648 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:26.848 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:27.048 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:27.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:27.048 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:27.048 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:27.238 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:27.238 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:27.238 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 588 ms to get response, and 591 ms overall
17-03-17 17:25:27.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:25:27.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:27.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:27.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:25:27.838 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:27.848 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:27.848 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:27.858 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:27.858 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:28.058 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:28.058 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:28.058 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31791, sync = True, waitForSettling = True)
17-03-17 17:25:28.058 -07 000000431 INF: Z Motor: Moving to -0.145530 mm, started at -0.139545 mm, distance = -5.99 um
17-03-17 17:25:28.058 -07 000000431 INF: FPGA: Xmit ZDACW 31791\n [Z Motor]
17-03-17 17:25:28.058 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:25:28.068 -07 000000431 INF: FPGA: 'ZDACW 31791' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:28.068 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:28.068 -07 000000429 INF: FPGA: Recv ZDACR 31791
17-03-17 17:25:28.078 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.078 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:28.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.228 -07 000000433 INF: FPGA: Recv ZSGSRD 31944
17-03-17 17:25:28.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:28.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.238 -07 000000433 INF: FPGA: Recv ZSGSRD 31944
17-03-17 17:25:28.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.248 -07 000000458 INF: FPGA: Recv ZSGSRD 31946
17-03-17 17:25:28.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.258 -07 000000458 INF: FPGA: Recv ZSGSRD 31950
17-03-17 17:25:28.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.268 -07 000000429 INF: FPGA: Recv ZSGSRD 31947
17-03-17 17:25:28.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.278 -07 000000458 INF: FPGA: Recv ZSGSRD 31941
17-03-17 17:25:28.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.288 -07 000000569 INF: FPGA: Recv ZSGSRD 31948
17-03-17 17:25:28.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.298 -07 000000429 INF: FPGA: Recv ZSGSRD 31944
17-03-17 17:25:28.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.308 -07 000000458 INF: FPGA: Recv ZSGSRD 31946
17-03-17 17:25:28.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:28.318 -07 000000429 INF: FPGA: Recv ZSGSRD 31947
17-03-17 17:25:28.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.328 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:28.328 -07 000000502 INF: FPGA: Recv ZPIEZORD 28698
17-03-17 17:25:28.338 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:28.338 -07 000000431 INF: Z Motor: Piezo is near 41.3 V (nominally 0 to 100 V), expect near 48.5 V, since DAC is at 4.851 V. Piezo Error = -7.2 V.
17-03-17 17:25:28.338 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -145.5 um, Read 10 ADC samples: Avg = 31946 (-144.7 uncal um), Error = 0.8 uncal um, Median = 31946 (-144.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31941 (-144.7 uncal um), Max = 31950 (-144.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:28.338 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31946, posNoise = 4, negNoise = 5
17-03-17 17:25:28.338 -07 000000431 INF: Z Motor: After move to -0.145530, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:28.338 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:28.338 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:28.338 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:28.338 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:28.338 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:28.338 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:28.338 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:28.348 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:28.348 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:28.348 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:28.348 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:28.358 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:28.358 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:25:28.358 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:28.558 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:28.758 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:28.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:28.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:28.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:28.948 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:28.948 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:28.948 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:25:29.348 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:25:29.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:29.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:29.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:29.548 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:29.608 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:29.608 -07 000000431 INF: Scanning Z-Position: -0.13903
17-03-17 17:25:29.618 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:29.618 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:29.628 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:29.628 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:29.828 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:29.828 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:29.828 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30371, sync = True, waitForSettling = True)
17-03-17 17:25:29.828 -07 000000431 INF: Z Motor: Moving to -0.139030 mm, started at -0.145551 mm, distance = 6.52 um
17-03-17 17:25:29.828 -07 000000431 INF: FPGA: Xmit ZDACW 30371\n [Z Motor]
17-03-17 17:25:29.828 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:25:29.838 -07 000000431 INF: FPGA: 'ZDACW 30371' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:29.838 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:29.838 -07 000000458 INF: FPGA: Recv ZDACR 30371
17-03-17 17:25:29.848 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:29.848 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:29.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:29.998 -07 000000569 INF: FPGA: Recv ZSGSRD 30933
17-03-17 17:25:30.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:30.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.008 -07 000000458 INF: FPGA: Recv ZSGSRD 30931
17-03-17 17:25:30.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.018 -07 000000569 INF: FPGA: Recv ZSGSRD 30937
17-03-17 17:25:30.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.028 -07 000000458 INF: FPGA: Recv ZSGSRD 30931
17-03-17 17:25:30.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.038 -07 000000438 INF: FPGA: Recv ZSGSRD 30937
17-03-17 17:25:30.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.048 -07 000000569 INF: FPGA: Recv ZSGSRD 30936
17-03-17 17:25:30.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.058 -07 000000502 INF: FPGA: Recv ZSGSRD 30927
17-03-17 17:25:30.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.068 -07 000000433 INF: FPGA: Recv ZSGSRD 30937
17-03-17 17:25:30.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.078 -07 000000458 INF: FPGA: Recv ZSGSRD 30931
17-03-17 17:25:30.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:30.088 -07 000000438 INF: FPGA: Recv ZSGSRD 30932
17-03-17 17:25:30.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.098 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:30.098 -07 000000382 INF: FPGA: Recv ZPIEZORD 27334
17-03-17 17:25:30.108 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:30.108 -07 000000431 INF: Z Motor: Piezo is near 38.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.0 V.
17-03-17 17:25:30.108 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30933 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30932 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30927 (-138.2 uncal um), Max = 30937 (-138.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:30.108 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30933, posNoise = 4, negNoise = 6
17-03-17 17:25:30.108 -07 000000431 INF: Z Motor: After move to -0.139030, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:30.108 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:25:30.108 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:30.108 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:30.108 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:30.108 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:30.108 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:30.118 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:30.118 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:25:30.118 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:30.118 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:30.118 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:30.128 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-17 17:25:30.128 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms.
17-03-17 17:25:30.128 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:30.328 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:30.528 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:30.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:30.528 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:30.528 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:25:30.718 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:30.718 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:30.828 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 692 ms to get response, and 699 ms overall
17-03-17 17:25:30.838 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.004458,
17-03-17 17:25:31.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:25:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:31.108 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 585 ms.
17-03-17 17:25:31.228 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:31.238 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:31.238 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:31.248 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:31.248 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:31.448 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:31.448 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:31.448 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31682, sync = True, waitForSettling = True)
17-03-17 17:25:31.448 -07 000000431 INF: Z Motor: Moving to -0.145031 mm, started at -0.139044 mm, distance = -5.99 um
17-03-17 17:25:31.448 -07 000000431 INF: FPGA: Xmit ZDACW 31682\n [Z Motor]
17-03-17 17:25:31.448 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:25:31.458 -07 000000431 INF: FPGA: 'ZDACW 31682' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:31.458 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:31.458 -07 000000458 INF: FPGA: Recv ZDACR 31682
17-03-17 17:25:31.468 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.468 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:31.498 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:31.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:31.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.618 -07 000000458 INF: FPGA: Recv ZSGSRD 31875
17-03-17 17:25:31.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:31.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.628 -07 000000458 INF: FPGA: Recv ZSGSRD 31867
17-03-17 17:25:31.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.638 -07 000000458 INF: FPGA: Recv ZSGSRD 31866
17-03-17 17:25:31.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.648 -07 000000458 INF: FPGA: Recv ZSGSRD 31867
17-03-17 17:25:31.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.658 -07 000000458 INF: FPGA: Recv ZSGSRD 31873
17-03-17 17:25:31.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:31.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.668 -07 000000458 INF: FPGA: Recv ZSGSRD 31867
17-03-17 17:25:31.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.678 -07 000000458 INF: FPGA: Recv ZSGSRD 31868
17-03-17 17:25:31.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.688 -07 000000458 INF: FPGA: Recv ZSGSRD 31866
17-03-17 17:25:31.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.698 -07 000000458 INF: FPGA: Recv ZSGSRD 31869
17-03-17 17:25:31.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:31.708 -07 000000458 INF: FPGA: Recv ZSGSRD 31862
17-03-17 17:25:31.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.718 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:31.718 -07 000000458 INF: FPGA: Recv ZPIEZORD 28592
17-03-17 17:25:31.728 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:31.728 -07 000000431 INF: Z Motor: Piezo is near 41.1 V (nominally 0 to 100 V), expect near 48.3 V, since DAC is at 4.834 V. Piezo Error = -7.3 V.
17-03-17 17:25:31.728 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -145.0 um, Read 10 ADC samples: Avg = 31868 (-144.2 uncal um), Error = 0.8 uncal um, Median = 31867 (-144.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31862 (-144.2 uncal um), Max = 31875 (-144.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:31.728 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31868, posNoise = 7, negNoise = 6
17-03-17 17:25:31.728 -07 000000431 INF: Z Motor: After move to -0.145031, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:31.728 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:31.728 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:31.728 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:31.728 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:31.728 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:31.738 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:31.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:31.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:31.738 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:31.738 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:31.738 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:31.758 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:31.758 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:31.758 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:31.958 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 196
17-03-17 17:25:32.158 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 396
17-03-17 17:25:32.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 396
17-03-17 17:25:32.158 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:32.168 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:25:32.348 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:32.348 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:32.348 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:25:32.748 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:25:32.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:32.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:32.748 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:32.948 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:33.018 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:33.018 -07 000000431 INF: Scanning Z-Position: -0.13853
17-03-17 17:25:33.018 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:33.018 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:33.028 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:33.028 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:33.228 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:33.228 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:33.228 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30262, sync = True, waitForSettling = True)
17-03-17 17:25:33.228 -07 000000431 INF: Z Motor: Moving to -0.138531 mm, started at -0.145050 mm, distance = 6.52 um
17-03-17 17:25:33.228 -07 000000431 INF: FPGA: Xmit ZDACW 30262\n [Z Motor]
17-03-17 17:25:33.228 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:25:33.238 -07 000000431 INF: FPGA: 'ZDACW 30262' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:33.238 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:33.238 -07 000000424 INF: FPGA: Recv ZDACR 30262
17-03-17 17:25:33.248 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.248 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:33.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.398 -07 000000480 INF: FPGA: Recv ZSGSRD 30858
17-03-17 17:25:33.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:33.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.408 -07 000000424 INF: FPGA: Recv ZSGSRD 30856
17-03-17 17:25:33.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.418 -07 000000627 INF: FPGA: Recv ZSGSRD 30849
17-03-17 17:25:33.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.428 -07 000000424 INF: FPGA: Recv ZSGSRD 30854
17-03-17 17:25:33.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.438 -07 000000458 INF: FPGA: Recv ZSGSRD 30860
17-03-17 17:25:33.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.448 -07 000000424 INF: FPGA: Recv ZSGSRD 30848
17-03-17 17:25:33.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.458 -07 000000627 INF: FPGA: Recv ZSGSRD 30855
17-03-17 17:25:33.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.468 -07 000000618 INF: FPGA: Recv ZSGSRD 30855
17-03-17 17:25:33.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.478 -07 000000458 INF: FPGA: Recv ZSGSRD 30862
17-03-17 17:25:33.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:33.488 -07 000000618 INF: FPGA: Recv ZSGSRD 30854
17-03-17 17:25:33.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.498 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:33.498 -07 000000627 INF: FPGA: Recv ZPIEZORD 27243
17-03-17 17:25:33.508 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:33.508 -07 000000431 INF: Z Motor: Piezo is near 38.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -8.0 V.
17-03-17 17:25:33.508 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30855 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30855 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30848 (-137.7 uncal um), Max = 30862 (-137.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:25:33.508 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30855, posNoise = 7, negNoise = 7
17-03-17 17:25:33.508 -07 000000431 INF: Z Motor: After move to -0.138531, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:33.508 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:25:33.508 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:33.508 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:33.508 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:33.508 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:33.508 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:33.508 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:33.518 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:33.518 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:33.518 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:33.518 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:33.538 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 17:25:33.538 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 22 ms.
17-03-17 17:25:33.538 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:33.738 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:33.938 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:33.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:33.938 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:33.938 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:34.128 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:34.128 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:34.128 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:25:34.528 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:25:34.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:34.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:34.528 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:25:34.728 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:34.738 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:34.738 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:34.748 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:34.748 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:34.948 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:34.948 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:34.948 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31573, sync = True, waitForSettling = True)
17-03-17 17:25:34.948 -07 000000431 INF: Z Motor: Moving to -0.144532 mm, started at -0.138542 mm, distance = -5.99 um
17-03-17 17:25:34.948 -07 000000431 INF: FPGA: Xmit ZDACW 31573\n [Z Motor]
17-03-17 17:25:34.958 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:25:34.958 -07 000000431 INF: FPGA: 'ZDACW 31573' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 17:25:34.958 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:34.958 -07 000000424 INF: FPGA: Recv ZDACR 31573
17-03-17 17:25:34.968 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:25:34.968 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:35.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.118 -07 000000618 INF: FPGA: Recv ZSGSRD 31788
17-03-17 17:25:35.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:35.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.128 -07 000000458 INF: FPGA: Recv ZSGSRD 31790
17-03-17 17:25:35.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.138 -07 000000618 INF: FPGA: Recv ZSGSRD 31790
17-03-17 17:25:35.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.148 -07 000000627 INF: FPGA: Recv ZSGSRD 31789
17-03-17 17:25:35.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.158 -07 000000433 INF: FPGA: Recv ZSGSRD 31789
17-03-17 17:25:35.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:35.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.168 -07 000000627 INF: FPGA: Recv ZSGSRD 31788
17-03-17 17:25:35.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.178 -07 000000632 INF: FPGA: Recv ZSGSRD 31790
17-03-17 17:25:35.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.188 -07 000000458 INF: FPGA: Recv ZSGSRD 31789
17-03-17 17:25:35.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.198 -07 000000433 INF: FPGA: Recv ZSGSRD 31787
17-03-17 17:25:35.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:35.208 -07 000000424 INF: FPGA: Recv ZSGSRD 31795
17-03-17 17:25:35.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.218 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:35.218 -07 000000433 INF: FPGA: Recv ZPIEZORD 28521
17-03-17 17:25:35.228 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:35.228 -07 000000431 INF: Z Motor: Piezo is near 40.9 V (nominally 0 to 100 V), expect near 48.2 V, since DAC is at 4.818 V. Piezo Error = -7.2 V.
17-03-17 17:25:35.228 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -144.5 um, Read 10 ADC samples: Avg = 31790 (-143.7 uncal um), Error = 0.8 uncal um, Median = 31789 (-143.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31787 (-143.7 uncal um), Max = 31795 (-143.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:25:35.228 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31790, posNoise = 5, negNoise = 3
17-03-17 17:25:35.228 -07 000000431 INF: Z Motor: After move to -0.144532, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:35.228 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:25:35.228 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:35.228 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:35.228 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:35.228 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:35.228 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:35.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:35.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:35.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:35.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:35.238 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:35.248 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:25:35.248 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:25:35.248 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:35.758 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:35.758 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:35.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:35.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:35.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:25:35.838 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:35.838 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:35.838 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:25:36.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:25:36.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:36.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:36.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:25:36.538 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:36.608 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:36.608 -07 000000431 INF: Scanning Z-Position: -0.13803
17-03-17 17:25:36.608 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:36.758 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:36.758 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:36.758 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 140 ms to get response, and 145 ms overall
17-03-17 17:25:36.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:36.758 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.03576,
17-03-17 17:25:36.788 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:36.988 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:36.988 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 231 ms overall
17-03-17 17:25:36.988 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30153, sync = True, waitForSettling = True)
17-03-17 17:25:36.988 -07 000000431 INF: Z Motor: Moving to -0.138032 mm, started at -0.144549 mm, distance = 6.52 um
17-03-17 17:25:36.988 -07 000000431 INF: FPGA: Xmit ZDACW 30153\n [Z Motor]
17-03-17 17:25:36.988 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:25:36.998 -07 000000431 INF: FPGA: 'ZDACW 30153' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:25:36.998 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:36.998 -07 000000569 INF: FPGA: Recv ZDACR 30153
17-03-17 17:25:37.008 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.008 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:37.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.158 -07 000000382 INF: FPGA: Recv ZSGSRD 30780
17-03-17 17:25:37.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:37.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.168 -07 000000569 INF: FPGA: Recv ZSGSRD 30780
17-03-17 17:25:37.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.178 -07 000000382 INF: FPGA: Recv ZSGSRD 30773
17-03-17 17:25:37.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.188 -07 000000569 INF: FPGA: Recv ZSGSRD 30784
17-03-17 17:25:37.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.198 -07 000000502 INF: FPGA: Recv ZSGSRD 30773
17-03-17 17:25:37.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.208 -07 000000438 INF: FPGA: Recv ZSGSRD 30774
17-03-17 17:25:37.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.218 -07 000000382 INF: FPGA: Recv ZSGSRD 30776
17-03-17 17:25:37.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.228 -07 000000569 INF: FPGA: Recv ZSGSRD 30771
17-03-17 17:25:37.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.238 -07 000000382 INF: FPGA: Recv ZSGSRD 30781
17-03-17 17:25:37.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:37.248 -07 000000502 INF: FPGA: Recv ZSGSRD 30775
17-03-17 17:25:37.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.258 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:37.258 -07 000000541 INF: FPGA: Recv ZPIEZORD 27178
17-03-17 17:25:37.268 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:37.268 -07 000000431 INF: Z Motor: Piezo is near 38.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.0 V.
17-03-17 17:25:37.268 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30777 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30771 (-137.2 uncal um), Max = 30784 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:37.268 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30777, posNoise = 7, negNoise = 6
17-03-17 17:25:37.268 -07 000000431 INF: Z Motor: After move to -0.138032, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:37.268 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:25:37.268 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:37.268 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:37.268 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:37.268 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:37.268 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:37.268 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:37.268 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:25:37.268 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:37.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:25:37.278 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:37.288 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:25:37.288 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:25:37.288 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:37.488 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:37.688 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:37.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:37.688 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:37.688 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:25:37.898 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:37.898 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:37.898 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 605 ms to get response, and 610 ms overall
17-03-17 17:25:38.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:25:38.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:38.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:38.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:25:38.398 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:38.408 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:38.408 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:38.418 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:25:38.418 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:38.618 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:38.618 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 17:25:38.618 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31463, sync = True, waitForSettling = True)
17-03-17 17:25:38.618 -07 000000431 INF: Z Motor: Moving to -0.144028 mm, started at -0.138041 mm, distance = -5.99 um
17-03-17 17:25:38.618 -07 000000431 INF: FPGA: Xmit ZDACW 31463\n [Z Motor]
17-03-17 17:25:38.618 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:25:38.628 -07 000000431 INF: FPGA: 'ZDACW 31463' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:25:38.628 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:38.628 -07 000000433 INF: FPGA: Recv ZDACR 31463
17-03-17 17:25:38.638 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.638 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:38.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.788 -07 000000433 INF: FPGA: Recv ZSGSRD 31710
17-03-17 17:25:38.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.798 -07 000000569 INF: FPGA: Recv ZSGSRD 31711
17-03-17 17:25:38.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.808 -07 000000424 INF: FPGA: Recv ZSGSRD 31709
17-03-17 17:25:38.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.818 -07 000000382 INF: FPGA: Recv ZSGSRD 31710
17-03-17 17:25:38.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.828 -07 000000433 INF: FPGA: Recv ZSGSRD 31709
17-03-17 17:25:38.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.838 -07 000000541 INF: FPGA: Recv ZSGSRD 31713
17-03-17 17:25:38.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.848 -07 000000502 INF: FPGA: Recv ZSGSRD 31711
17-03-17 17:25:38.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.858 -07 000000438 INF: FPGA: Recv ZSGSRD 31707
17-03-17 17:25:38.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.868 -07 000000382 INF: FPGA: Recv ZSGSRD 31711
17-03-17 17:25:38.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:38.878 -07 000000627 INF: FPGA: Recv ZSGSRD 31707
17-03-17 17:25:38.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.888 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:38.888 -07 000000627 INF: FPGA: Recv ZPIEZORD 28417
17-03-17 17:25:38.898 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:38.898 -07 000000431 INF: Z Motor: Piezo is near 40.7 V (nominally 0 to 100 V), expect near 48.0 V, since DAC is at 4.801 V. Piezo Error = -7.3 V.
17-03-17 17:25:38.898 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -144.0 um, Read 10 ADC samples: Avg = 31710 (-143.2 uncal um), Error = 0.8 uncal um, Median = 31710 (-143.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31707 (-143.2 uncal um), Max = 31713 (-143.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:25:38.898 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31710, posNoise = 3, negNoise = 3
17-03-17 17:25:38.898 -07 000000431 INF: Z Motor: After move to -0.144028, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:38.898 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:25:38.898 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:38.898 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:38.898 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:38.898 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:38.898 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:38.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:38.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:38.898 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:38.908 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:38.908 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:38.918 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:38.918 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:38.918 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:39.758 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 194
17-03-17 17:25:39.758 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 394
17-03-17 17:25:39.758 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:39.758 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:39.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 394
17-03-17 17:25:39.758 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 831 ms to get response, and 834 ms overall
17-03-17 17:25:39.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:39.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:25:40.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 578 ms.
17-03-17 17:25:40.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:40.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:40.348 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:25:40.458 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:40.528 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:40.528 -07 000000431 INF: Scanning Z-Position: -0.13753
17-03-17 17:25:40.528 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:40.528 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:40.538 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:40.538 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:40.738 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:40.738 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:40.738 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30043, sync = True, waitForSettling = True)
17-03-17 17:25:40.738 -07 000000431 INF: Z Motor: Moving to -0.137528 mm, started at -0.144035 mm, distance = 6.51 um
17-03-17 17:25:40.738 -07 000000431 INF: FPGA: Xmit ZDACW 30043\n [Z Motor]
17-03-17 17:25:40.738 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:25:40.748 -07 000000431 INF: FPGA: 'ZDACW 30043' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:40.748 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:40.748 -07 000000627 INF: FPGA: Recv ZDACR 30043
17-03-17 17:25:40.758 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.758 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:40.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.908 -07 000000502 INF: FPGA: Recv ZSGSRD 30703
17-03-17 17:25:40.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:40.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.918 -07 000000569 INF: FPGA: Recv ZSGSRD 30694
17-03-17 17:25:40.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.928 -07 000000502 INF: FPGA: Recv ZSGSRD 30697
17-03-17 17:25:40.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.938 -07 000000424 INF: FPGA: Recv ZSGSRD 30694
17-03-17 17:25:40.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.948 -07 000000429 INF: FPGA: Recv ZSGSRD 30703
17-03-17 17:25:40.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.958 -07 000000541 INF: FPGA: Recv ZSGSRD 30695
17-03-17 17:25:40.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.968 -07 000000632 INF: FPGA: Recv ZSGSRD 30696
17-03-17 17:25:40.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.978 -07 000000424 INF: FPGA: Recv ZSGSRD 30702
17-03-17 17:25:40.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.988 -07 000000502 INF: FPGA: Recv ZSGSRD 30701
17-03-17 17:25:40.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:40.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:40.998 -07 000000627 INF: FPGA: Recv ZSGSRD 30700
17-03-17 17:25:41.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:41.008 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:41.008 -07 000000569 INF: FPGA: Recv ZPIEZORD 27076
17-03-17 17:25:41.018 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:41.018 -07 000000431 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.0 V.
17-03-17 17:25:41.018 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30698 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30698 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30694 (-136.7 uncal um), Max = 30703 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:25:41.018 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30698, posNoise = 5, negNoise = 4
17-03-17 17:25:41.018 -07 000000431 INF: Z Motor: After move to -0.137528, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:41.018 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:41.018 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:41.018 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:41.018 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:41.018 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:41.018 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:41.018 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:41.018 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:41.018 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:41.028 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:41.028 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:41.038 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:41.038 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:41.038 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:41.238 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:41.438 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:41.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:41.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:41.438 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:41.498 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:41.628 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:41.628 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:41.628 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:25:42.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:25:42.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:42.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:42.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms.
17-03-17 17:25:42.158 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:42.228 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:42.238 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:42.238 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:42.248 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:42.248 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:42.408 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06299,
17-03-17 17:25:42.448 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:42.448 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:25:42.448 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31354, sync = True, waitForSettling = True)
17-03-17 17:25:42.448 -07 000000431 INF: Z Motor: Moving to -0.143529 mm, started at -0.137534 mm, distance = -6.00 um
17-03-17 17:25:42.448 -07 000000431 INF: FPGA: Xmit ZDACW 31354\n [Z Motor]
17-03-17 17:25:42.448 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:25:42.458 -07 000000431 INF: FPGA: 'ZDACW 31354' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:42.458 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:42.458 -07 000000382 INF: FPGA: Recv ZDACR 31354
17-03-17 17:25:42.468 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.468 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:42.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.618 -07 000000569 INF: FPGA: Recv ZSGSRD 31629
17-03-17 17:25:42.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:42.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.628 -07 000000424 INF: FPGA: Recv ZSGSRD 31634
17-03-17 17:25:42.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.638 -07 000000541 INF: FPGA: Recv ZSGSRD 31633
17-03-17 17:25:42.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.648 -07 000000627 INF: FPGA: Recv ZSGSRD 31636
17-03-17 17:25:42.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.658 -07 000000382 INF: FPGA: Recv ZSGSRD 31631
17-03-17 17:25:42.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.668 -07 000000569 INF: FPGA: Recv ZSGSRD 31630
17-03-17 17:25:42.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.678 -07 000000632 INF: FPGA: Recv ZSGSRD 31637
17-03-17 17:25:42.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.688 -07 000000627 INF: FPGA: Recv ZSGSRD 31635
17-03-17 17:25:42.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.698 -07 000000424 INF: FPGA: Recv ZSGSRD 31632
17-03-17 17:25:42.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:42.708 -07 000000382 INF: FPGA: Recv ZSGSRD 31629
17-03-17 17:25:42.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.718 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:42.718 -07 000000502 INF: FPGA: Recv ZPIEZORD 28289
17-03-17 17:25:42.728 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:42.728 -07 000000431 INF: Z Motor: Piezo is near 40.4 V (nominally 0 to 100 V), expect near 47.8 V, since DAC is at 4.784 V. Piezo Error = -7.4 V.
17-03-17 17:25:42.728 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -143.5 um, Read 10 ADC samples: Avg = 31633 (-142.7 uncal um), Error = 0.8 uncal um, Median = 31632 (-142.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31629 (-142.7 uncal um), Max = 31637 (-142.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:25:42.728 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31633, posNoise = 4, negNoise = 4
17-03-17 17:25:42.728 -07 000000431 INF: Z Motor: After move to -0.143529, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:42.728 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:25:42.728 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:42.728 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:42.728 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:42.728 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:42.728 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:42.728 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:42.738 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:42.738 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:42.738 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:42.738 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:42.748 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:42.748 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:42.748 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:42.948 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:43.148 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:43.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:43.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:43.148 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:43.338 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:43.338 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:43.338 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:25:43.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:25:43.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:43.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:43.738 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:25:43.938 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:44.118 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:44.118 -07 000000431 INF: Scanning Z-Position: -0.13703
17-03-17 17:25:44.118 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:44.118 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:44.128 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:25:44.128 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:44.328 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:44.328 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:44.328 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29934, sync = True, waitForSettling = True)
17-03-17 17:25:44.328 -07 000000431 INF: Z Motor: Moving to -0.137029 mm, started at -0.143540 mm, distance = 6.51 um
17-03-17 17:25:44.328 -07 000000431 INF: FPGA: Xmit ZDACW 29934\n [Z Motor]
17-03-17 17:25:44.328 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:25:44.338 -07 000000431 INF: FPGA: 'ZDACW 29934' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:44.338 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:44.338 -07 000000627 INF: FPGA: Recv ZDACR 29934
17-03-17 17:25:44.348 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.348 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:44.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.498 -07 000000632 INF: FPGA: Recv ZSGSRD 30620
17-03-17 17:25:44.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:44.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.508 -07 000000502 INF: FPGA: Recv ZSGSRD 30623
17-03-17 17:25:44.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.518 -07 000000424 INF: FPGA: Recv ZSGSRD 30624
17-03-17 17:25:44.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.528 -07 000000502 INF: FPGA: Recv ZSGSRD 30626
17-03-17 17:25:44.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.538 -07 000000632 INF: FPGA: Recv ZSGSRD 30619
17-03-17 17:25:44.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.548 -07 000000382 INF: FPGA: Recv ZSGSRD 30618
17-03-17 17:25:44.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.558 -07 000000424 INF: FPGA: Recv ZSGSRD 30622
17-03-17 17:25:44.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.568 -07 000000541 INF: FPGA: Recv ZSGSRD 30619
17-03-17 17:25:44.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30626
17-03-17 17:25:44.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:44.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:44.588 -07 000000569 INF: FPGA: Recv ZSGSRD 30620
17-03-17 17:25:44.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.598 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:44.598 -07 000000424 INF: FPGA: Recv ZPIEZORD 26989
17-03-17 17:25:44.608 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:44.608 -07 000000431 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -8.0 V.
17-03-17 17:25:44.608 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30622 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30621 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30618 (-136.2 uncal um), Max = 30626 (-136.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:25:44.608 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30622, posNoise = 4, negNoise = 4
17-03-17 17:25:44.608 -07 000000431 INF: Z Motor: After move to -0.137029, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:44.608 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:44.608 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:44.608 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:44.608 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:44.608 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:44.608 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:44.608 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:44.608 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:44.608 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:44.618 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:44.618 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:44.628 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:44.628 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:25:44.628 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:44.828 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:45.028 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:45.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:45.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:45.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:45.218 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:45.218 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:45.218 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:25:45.618 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:25:45.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:45.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:45.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:25:45.818 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:45.828 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:45.828 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:45.838 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:45.838 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:46.038 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:46.038 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:46.038 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31245, sync = True, waitForSettling = True)
17-03-17 17:25:46.038 -07 000000431 INF: Z Motor: Moving to -0.143030 mm, started at -0.137046 mm, distance = -5.98 um
17-03-17 17:25:46.038 -07 000000431 INF: FPGA: Xmit ZDACW 31245\n [Z Motor]
17-03-17 17:25:46.038 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:25:46.048 -07 000000431 INF: FPGA: 'ZDACW 31245' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:46.048 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:46.048 -07 000000627 INF: FPGA: Recv ZDACR 31245
17-03-17 17:25:46.058 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.058 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:46.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.208 -07 000000382 INF: FPGA: Recv ZSGSRD 31555
17-03-17 17:25:46.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:46.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.218 -07 000000502 INF: FPGA: Recv ZSGSRD 31550
17-03-17 17:25:46.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.228 -07 000000382 INF: FPGA: Recv ZSGSRD 31555
17-03-17 17:25:46.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.238 -07 000000424 INF: FPGA: Recv ZSGSRD 31560
17-03-17 17:25:46.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.248 -07 000000382 INF: FPGA: Recv ZSGSRD 31559
17-03-17 17:25:46.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.258 -07 000000627 INF: FPGA: Recv ZSGSRD 31555
17-03-17 17:25:46.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.268 -07 000000632 INF: FPGA: Recv ZSGSRD 31554
17-03-17 17:25:46.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.278 -07 000000502 INF: FPGA: Recv ZSGSRD 31557
17-03-17 17:25:46.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.288 -07 000000424 INF: FPGA: Recv ZSGSRD 31553
17-03-17 17:25:46.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:46.298 -07 000000502 INF: FPGA: Recv ZSGSRD 31555
17-03-17 17:25:46.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.308 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:46.308 -07 000000627 INF: FPGA: Recv ZPIEZORD 28206
17-03-17 17:25:46.318 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:46.318 -07 000000431 INF: Z Motor: Piezo is near 40.3 V (nominally 0 to 100 V), expect near 47.7 V, since DAC is at 4.768 V. Piezo Error = -7.4 V.
17-03-17 17:25:46.318 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -143.0 um, Read 10 ADC samples: Avg = 31555 (-142.2 uncal um), Error = 0.8 uncal um, Median = 31555 (-142.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31550 (-142.2 uncal um), Max = 31560 (-142.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:46.318 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31555, posNoise = 5, negNoise = 5
17-03-17 17:25:46.318 -07 000000431 INF: Z Motor: After move to -0.143030, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:46.318 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:25:46.318 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:46.318 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:46.318 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:46.318 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:46.318 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:46.318 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:46.328 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:46.328 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:46.328 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:46.328 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:46.338 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:25:46.338 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:25:46.338 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:46.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:46.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:46.538 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:46.738 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:46.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:46.738 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:46.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:46.928 -07 000000424 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:46.928 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:46.928 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:25:47.328 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:25:47.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:47.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:47.338 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:25:47.528 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:47.698 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:47.698 -07 000000431 INF: Scanning Z-Position: -0.13653
17-03-17 17:25:47.698 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:47.708 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:47.708 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:25:47.708 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:47.788 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.019446,
17-03-17 17:25:47.908 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:47.908 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:25:47.908 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29825, sync = True, waitForSettling = True)
17-03-17 17:25:47.908 -07 000000431 INF: Z Motor: Moving to -0.136530 mm, started at -0.143039 mm, distance = 6.51 um
17-03-17 17:25:47.908 -07 000000431 INF: FPGA: Xmit ZDACW 29825\n [Z Motor]
17-03-17 17:25:47.918 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:25:47.918 -07 000000431 INF: FPGA: 'ZDACW 29825' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:47.918 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:47.918 -07 000000502 INF: FPGA: Recv ZDACR 29825
17-03-17 17:25:47.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:47.928 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:48.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.078 -07 000000569 INF: FPGA: Recv ZSGSRD 30536
17-03-17 17:25:48.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:48.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.088 -07 000000569 INF: FPGA: Recv ZSGSRD 30545
17-03-17 17:25:48.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.098 -07 000000618 INF: FPGA: Recv ZSGSRD 30543
17-03-17 17:25:48.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.108 -07 000000569 INF: FPGA: Recv ZSGSRD 30541
17-03-17 17:25:48.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30538
17-03-17 17:25:48.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.128 -07 000000502 INF: FPGA: Recv ZSGSRD 30544
17-03-17 17:25:48.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.138 -07 000000569 INF: FPGA: Recv ZSGSRD 30548
17-03-17 17:25:48.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.148 -07 000000502 INF: FPGA: Recv ZSGSRD 30542
17-03-17 17:25:48.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.158 -07 000000627 INF: FPGA: Recv ZSGSRD 30535
17-03-17 17:25:48.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:48.168 -07 000000502 INF: FPGA: Recv ZSGSRD 30547
17-03-17 17:25:48.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.178 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:48.178 -07 000000627 INF: FPGA: Recv ZPIEZORD 26872
17-03-17 17:25:48.188 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:48.188 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -8.1 V.
17-03-17 17:25:48.188 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30542 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30542 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30535 (-135.7 uncal um), Max = 30548 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:25:48.188 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30542, posNoise = 6, negNoise = 7
17-03-17 17:25:48.188 -07 000000431 INF: Z Motor: After move to -0.136530, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:48.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:25:48.188 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:48.188 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:48.188 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:48.188 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:48.188 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:48.188 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:48.198 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:25:48.198 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:48.198 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:48.198 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:48.208 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:25:48.208 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:25:48.208 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:48.408 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:48.608 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:48.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:48.608 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:48.608 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:48.798 -07 000000627 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:48.798 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:48.798 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:25:49.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:25:49.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:49.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:49.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:25:49.398 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:49.408 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:49.408 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:49.418 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:49.418 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:49.618 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:49.618 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:49.618 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31136, sync = True, waitForSettling = True)
17-03-17 17:25:49.618 -07 000000431 INF: Z Motor: Moving to -0.142531 mm, started at -0.136532 mm, distance = -6.00 um
17-03-17 17:25:49.618 -07 000000431 INF: FPGA: Xmit ZDACW 31136\n [Z Motor]
17-03-17 17:25:49.618 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:25:49.628 -07 000000431 INF: FPGA: 'ZDACW 31136' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:49.628 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:49.628 -07 000000424 INF: FPGA: Recv ZDACR 31136
17-03-17 17:25:49.638 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.638 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:49.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.788 -07 000000424 INF: FPGA: Recv ZSGSRD 31480
17-03-17 17:25:49.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:49.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.798 -07 000000627 INF: FPGA: Recv ZSGSRD 31478
17-03-17 17:25:49.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.808 -07 000000627 INF: FPGA: Recv ZSGSRD 31477
17-03-17 17:25:49.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.818 -07 000000627 INF: FPGA: Recv ZSGSRD 31476
17-03-17 17:25:49.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.828 -07 000000618 INF: FPGA: Recv ZSGSRD 31482
17-03-17 17:25:49.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.838 -07 000000627 INF: FPGA: Recv ZSGSRD 31479
17-03-17 17:25:49.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.848 -07 000000438 INF: FPGA: Recv ZSGSRD 31480
17-03-17 17:25:49.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.858 -07 000000627 INF: FPGA: Recv ZSGSRD 31480
17-03-17 17:25:49.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.868 -07 000000627 INF: FPGA: Recv ZSGSRD 31476
17-03-17 17:25:49.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:49.878 -07 000000438 INF: FPGA: Recv ZSGSRD 31479
17-03-17 17:25:49.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.888 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:49.888 -07 000000627 INF: FPGA: Recv ZPIEZORD 28119
17-03-17 17:25:49.898 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:49.898 -07 000000431 INF: Z Motor: Piezo is near 40.1 V (nominally 0 to 100 V), expect near 47.5 V, since DAC is at 4.751 V. Piezo Error = -7.4 V.
17-03-17 17:25:49.898 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -142.5 um, Read 10 ADC samples: Avg = 31479 (-141.7 uncal um), Error = 0.8 uncal um, Median = 31479 (-141.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31476 (-141.7 uncal um), Max = 31482 (-141.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:25:49.898 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31479, posNoise = 3, negNoise = 3
17-03-17 17:25:49.898 -07 000000431 INF: Z Motor: After move to -0.142531, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:49.898 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:49.898 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:49.898 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:49.898 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:49.898 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:49.898 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:49.898 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:49.908 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:49.908 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:49.908 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:49.908 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:49.918 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:25:49.918 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:25:49.918 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:50.118 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:50.318 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:50.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:50.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:50.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:25:50.508 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:50.508 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:50.508 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:25:50.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 590 ms.
17-03-17 17:25:50.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:50.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:50.908 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 595 ms.
17-03-17 17:25:51.108 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:51.168 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:51.168 -07 000000431 INF: Scanning Z-Position: -0.13603
17-03-17 17:25:51.178 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:51.178 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:51.188 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.188 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:51.388 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:51.388 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:51.388 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29716, sync = True, waitForSettling = True)
17-03-17 17:25:51.388 -07 000000431 INF: Z Motor: Moving to -0.136031 mm, started at -0.142551 mm, distance = 6.52 um
17-03-17 17:25:51.388 -07 000000431 INF: FPGA: Xmit ZDACW 29716\n [Z Motor]
17-03-17 17:25:51.388 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:25:51.398 -07 000000431 INF: FPGA: 'ZDACW 29716' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:51.398 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:51.398 -07 000000433 INF: FPGA: Recv ZDACR 29716
17-03-17 17:25:51.408 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:51.408 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:51.498 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:51.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.558 -07 000000561 INF: FPGA: Recv ZSGSRD 30467
17-03-17 17:25:51.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.568 -07 000000458 INF: FPGA: Recv ZSGSRD 30463
17-03-17 17:25:51.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.578 -07 000000561 INF: FPGA: Recv ZSGSRD 30466
17-03-17 17:25:51.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.588 -07 000000458 INF: FPGA: Recv ZSGSRD 30469
17-03-17 17:25:51.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.598 -07 000000480 INF: FPGA: Recv ZSGSRD 30462
17-03-17 17:25:51.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.608 -07 000000502 INF: FPGA: Recv ZSGSRD 30465
17-03-17 17:25:51.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.618 -07 000000502 INF: FPGA: Recv ZSGSRD 30472
17-03-17 17:25:51.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.628 -07 000000502 INF: FPGA: Recv ZSGSRD 30464
17-03-17 17:25:51.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.638 -07 000000480 INF: FPGA: Recv ZSGSRD 30467
17-03-17 17:25:51.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:51.648 -07 000000480 INF: FPGA: Recv ZSGSRD 30462
17-03-17 17:25:51.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.658 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:51.658 -07 000000480 INF: FPGA: Recv ZPIEZORD 26773
17-03-17 17:25:51.668 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:51.668 -07 000000431 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -8.1 V.
17-03-17 17:25:51.668 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30466 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30466 (-135.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30462 (-135.2 uncal um), Max = 30472 (-135.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:25:51.668 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30466, posNoise = 6, negNoise = 4
17-03-17 17:25:51.668 -07 000000431 INF: Z Motor: After move to -0.136031, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:51.668 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:25:51.668 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:51.668 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:51.668 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:51.668 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:51.678 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:51.678 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:51.678 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:25:51.678 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:51.678 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:51.678 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:51.688 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:25:51.688 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:25:51.688 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:51.888 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:52.088 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:52.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:52.088 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:52.088 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:25:52.388 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:52.388 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:52.388 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 687 ms to get response, and 697 ms overall
17-03-17 17:25:52.668 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:25:52.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:52.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:52.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 585 ms.
17-03-17 17:25:52.788 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:52.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:52.798 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:52.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:25:52.808 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:53.008 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:53.008 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:53.008 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 31026, sync = True, waitForSettling = True)
17-03-17 17:25:53.008 -07 000000431 INF: Z Motor: Moving to -0.142028 mm, started at -0.136043 mm, distance = -5.98 um
17-03-17 17:25:53.008 -07 000000431 INF: FPGA: Xmit ZDACW 31026\n [Z Motor]
17-03-17 17:25:53.008 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:25:53.018 -07 000000431 INF: FPGA: 'ZDACW 31026' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:53.018 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:53.018 -07 000000502 INF: FPGA: Recv ZDACR 31026
17-03-17 17:25:53.028 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.028 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:53.148 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.042558,
17-03-17 17:25:53.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.178 -07 000000429 INF: FPGA: Recv ZSGSRD 31404
17-03-17 17:25:53.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.188 -07 000000502 INF: FPGA: Recv ZSGSRD 31401
17-03-17 17:25:53.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.208 -07 000000480 INF: FPGA: Recv ZSGSRD 31404
17-03-17 17:25:53.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:25:53.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.218 -07 000000632 INF: FPGA: Recv ZSGSRD 31398
17-03-17 17:25:53.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.228 -07 000000438 INF: FPGA: Recv ZSGSRD 31399
17-03-17 17:25:53.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.238 -07 000000382 INF: FPGA: Recv ZSGSRD 31399
17-03-17 17:25:53.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.248 -07 000000541 INF: FPGA: Recv ZSGSRD 31396
17-03-17 17:25:53.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.258 -07 000000424 INF: FPGA: Recv ZSGSRD 31398
17-03-17 17:25:53.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.268 -07 000000632 INF: FPGA: Recv ZSGSRD 31403
17-03-17 17:25:53.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:53.278 -07 000000429 INF: FPGA: Recv ZSGSRD 31406
17-03-17 17:25:53.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.288 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:53.288 -07 000000480 INF: FPGA: Recv ZPIEZORD 28050
17-03-17 17:25:53.298 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:53.298 -07 000000431 INF: Z Motor: Piezo is near 39.9 V (nominally 0 to 100 V), expect near 47.3 V, since DAC is at 4.734 V. Piezo Error = -7.4 V.
17-03-17 17:25:53.298 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -142.0 um, Read 10 ADC samples: Avg = 31401 (-141.2 uncal um), Error = 0.8 uncal um, Median = 31400 (-141.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31396 (-141.2 uncal um), Max = 31406 (-141.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:53.298 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31401, posNoise = 5, negNoise = 5
17-03-17 17:25:53.298 -07 000000431 INF: Z Motor: After move to -0.142028, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:53.298 -07 000000431 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 17:25:53.298 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:53.298 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:53.298 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:53.298 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:53.298 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:53.298 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:53.298 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:25:53.298 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:53.308 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:53.308 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:53.318 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:25:53.318 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:25:53.318 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:53.518 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:53.718 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:53.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:53.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:53.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:25:53.908 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:53.908 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:53.908 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 590 ms overall
17-03-17 17:25:54.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:25:54.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:54.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:54.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:54.508 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:54.578 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:54.578 -07 000000431 INF: Scanning Z-Position: -0.13553
17-03-17 17:25:54.578 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:54.578 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:54.588 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:25:54.588 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:54.788 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:54.788 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:54.788 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29607, sync = True, waitForSettling = True)
17-03-17 17:25:54.788 -07 000000431 INF: Z Motor: Moving to -0.135532 mm, started at -0.142050 mm, distance = 6.52 um
17-03-17 17:25:54.788 -07 000000431 INF: FPGA: Xmit ZDACW 29607\n [Z Motor]
17-03-17 17:25:54.788 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:25:54.798 -07 000000431 INF: FPGA: 'ZDACW 29607' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:54.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:54.798 -07 000000382 INF: FPGA: Recv ZDACR 29607
17-03-17 17:25:54.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:54.808 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:54.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:54.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30390
17-03-17 17:25:54.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:54.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:54.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30391
17-03-17 17:25:54.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:54.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:54.978 -07 000000502 INF: FPGA: Recv ZSGSRD 30390
17-03-17 17:25:54.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:54.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:54.988 -07 000000438 INF: FPGA: Recv ZSGSRD 30383
17-03-17 17:25:54.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:54.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:54.998 -07 000000424 INF: FPGA: Recv ZSGSRD 30389
17-03-17 17:25:55.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:55.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:55.008 -07 000000480 INF: FPGA: Recv ZSGSRD 30391
17-03-17 17:25:55.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:55.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:55.018 -07 000000433 INF: FPGA: Recv ZSGSRD 30384
17-03-17 17:25:55.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:55.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:55.028 -07 000000429 INF: FPGA: Recv ZSGSRD 30388
17-03-17 17:25:55.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:55.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:55.038 -07 000000541 INF: FPGA: Recv ZSGSRD 30391
17-03-17 17:25:55.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:55.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:55.048 -07 000000438 INF: FPGA: Recv ZSGSRD 30389
17-03-17 17:25:55.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:55.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:55.058 -07 000000382 INF: FPGA: Recv ZPIEZORD 26684
17-03-17 17:25:55.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:55.068 -07 000000431 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -8.2 V.
17-03-17 17:25:55.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30389 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30390 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30383 (-134.7 uncal um), Max = 30391 (-134.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:25:55.068 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30389, posNoise = 2, negNoise = 6
17-03-17 17:25:55.068 -07 000000431 INF: Z Motor: After move to -0.135532, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:55.068 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:25:55.068 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:55.068 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:55.068 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:55.068 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:55.068 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:55.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:55.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:55.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:55.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:25:55.078 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:55.088 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:55.088 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:25:55.098 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:55.288 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:55.488 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:55.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:55.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:55.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:25:55.678 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:55.688 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:55.688 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:25:56.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:25:56.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:56.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:56.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:25:56.288 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:56.298 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:56.298 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:56.308 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:25:56.308 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:56.498 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:25:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:25:56.508 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:56.508 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:56.508 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30917, sync = True, waitForSettling = True)
17-03-17 17:25:56.508 -07 000000431 INF: Z Motor: Moving to -0.141529 mm, started at -0.135549 mm, distance = -5.98 um
17-03-17 17:25:56.508 -07 000000431 INF: FPGA: Xmit ZDACW 30917\n [Z Motor]
17-03-17 17:25:56.508 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:25:56.518 -07 000000431 INF: FPGA: 'ZDACW 30917' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:56.518 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:56.518 -07 000000424 INF: FPGA: Recv ZDACR 30917
17-03-17 17:25:56.528 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.528 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:56.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.678 -07 000000382 INF: FPGA: Recv ZSGSRD 31324
17-03-17 17:25:56.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:56.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.688 -07 000000382 INF: FPGA: Recv ZSGSRD 31321
17-03-17 17:25:56.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.698 -07 000000541 INF: FPGA: Recv ZSGSRD 31320
17-03-17 17:25:56.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.708 -07 000000433 INF: FPGA: Recv ZSGSRD 31322
17-03-17 17:25:56.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.718 -07 000000438 INF: FPGA: Recv ZSGSRD 31323
17-03-17 17:25:56.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.728 -07 000000438 INF: FPGA: Recv ZSGSRD 31320
17-03-17 17:25:56.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.738 -07 000000632 INF: FPGA: Recv ZSGSRD 31320
17-03-17 17:25:56.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.748 -07 000000632 INF: FPGA: Recv ZSGSRD 31327
17-03-17 17:25:56.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.758 -07 000000429 INF: FPGA: Recv ZSGSRD 31317
17-03-17 17:25:56.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:56.768 -07 000000632 INF: FPGA: Recv ZSGSRD 31320
17-03-17 17:25:56.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.778 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:56.778 -07 000000438 INF: FPGA: Recv ZPIEZORD 27952
17-03-17 17:25:56.788 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:56.788 -07 000000431 INF: Z Motor: Piezo is near 39.7 V (nominally 0 to 100 V), expect near 47.2 V, since DAC is at 4.718 V. Piezo Error = -7.5 V.
17-03-17 17:25:56.788 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -141.5 um, Read 10 ADC samples: Avg = 31321 (-140.7 uncal um), Error = 0.8 uncal um, Median = 31320 (-140.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31317 (-140.7 uncal um), Max = 31327 (-140.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:25:56.788 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31321, posNoise = 6, negNoise = 4
17-03-17 17:25:56.788 -07 000000431 INF: Z Motor: After move to -0.141529, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:56.788 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:25:56.788 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:56.788 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:56.788 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:56.788 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:56.788 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:56.788 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:56.798 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:56.798 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:56.798 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:25:56.798 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:56.808 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:25:56.808 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:25:56.808 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:57.008 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:57.208 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:57.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:57.208 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:57.208 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:25:57.398 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:57.398 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:57.398 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:25:57.788 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:25:57.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:57.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:57.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:25:57.998 -07 000000431 INF: MeasureProfile start
17-03-17 17:25:58.068 -07 000000431 INF: MeasureProfile done
17-03-17 17:25:58.068 -07 000000431 INF: Scanning Z-Position: -0.13503
17-03-17 17:25:58.068 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:58.068 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:58.078 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:25:58.078 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:25:58.278 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:25:58.278 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:58.278 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29497, sync = True, waitForSettling = True)
17-03-17 17:25:58.278 -07 000000431 INF: Z Motor: Moving to -0.135029 mm, started at -0.141536 mm, distance = 6.51 um
17-03-17 17:25:58.278 -07 000000431 INF: FPGA: Xmit ZDACW 29497\n [Z Motor]
17-03-17 17:25:58.278 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:25:58.288 -07 000000431 INF: FPGA: 'ZDACW 29497' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:25:58.288 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:58.288 -07 000000627 INF: FPGA: Recv ZDACR 29497
17-03-17 17:25:58.298 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.298 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:25:58.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.448 -07 000000429 INF: FPGA: Recv ZSGSRD 30314
17-03-17 17:25:58.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:25:58.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.458 -07 000000438 INF: FPGA: Recv ZSGSRD 30308
17-03-17 17:25:58.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.468 -07 000000618 INF: FPGA: Recv ZSGSRD 30305
17-03-17 17:25:58.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.478 -07 000000569 INF: FPGA: Recv ZSGSRD 30309
17-03-17 17:25:58.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.488 -07 000000618 INF: FPGA: Recv ZSGSRD 30313
17-03-17 17:25:58.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.498 -07 000000438 INF: FPGA: Recv ZSGSRD 30307
17-03-17 17:25:58.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.508 -07 000000429 INF: FPGA: Recv ZSGSRD 30311
17-03-17 17:25:58.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.528 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.047997,
17-03-17 17:25:58.528 -07 000000458 INF: FPGA: Recv ZSGSRD 30315
17-03-17 17:25:58.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:25:58.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.538 -07 000000438 INF: FPGA: Recv ZSGSRD 30311
17-03-17 17:25:58.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:25:58.558 -07 000000618 INF: FPGA: Recv ZSGSRD 30309
17-03-17 17:25:58.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:25:58.568 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:25:58.568 -07 000000438 INF: FPGA: Recv ZPIEZORD 26634
17-03-17 17:25:58.578 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:58.578 -07 000000431 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -8.1 V.
17-03-17 17:25:58.578 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30310 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30305 (-134.2 uncal um), Max = 30315 (-134.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:25:58.578 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 5, negNoise = 5
17-03-17 17:25:58.578 -07 000000431 INF: Z Motor: After move to -0.135029, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:25:58.578 -07 000000431 INF: Z Motor: MoveAbsStepped took 294 ms)
17-03-17 17:25:58.578 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:25:58.578 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:25:58.578 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:25:58.578 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:25:58.578 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:25:58.578 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:25:58.588 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:25:58.588 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:25:58.588 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:25:58.588 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:25:58.598 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:25:58.598 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:25:58.608 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:25:58.798 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:25:58.998 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:25:58.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:25:58.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:25:58.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:25:59.308 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:25:59.308 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:25:59.308 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 695 ms to get response, and 707 ms overall
17-03-17 17:25:59.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 589 ms.
17-03-17 17:25:59.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:25:59.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:25:59.598 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:25:59.708 -07 000000431 INF: ComputeBrenner start
17-03-17 17:25:59.718 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:25:59.728 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:25:59.728 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:25:59.728 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:25:59.928 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:25:59.928 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:25:59.928 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30808, sync = True, waitForSettling = True)
17-03-17 17:25:59.928 -07 000000431 INF: Z Motor: Moving to -0.141030 mm, started at -0.135041 mm, distance = -5.99 um
17-03-17 17:25:59.928 -07 000000431 INF: FPGA: Xmit ZDACW 30808\n [Z Motor]
17-03-17 17:25:59.928 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:25:59.938 -07 000000431 INF: FPGA: 'ZDACW 30808' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:25:59.938 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:25:59.938 -07 000000438 INF: FPGA: Recv ZDACR 30808
17-03-17 17:25:59.948 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:25:59.948 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:00.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.098 -07 000000424 INF: FPGA: Recv ZSGSRD 31246
17-03-17 17:26:00.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:00.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.108 -07 000000458 INF: FPGA: Recv ZSGSRD 31242
17-03-17 17:26:00.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.118 -07 000000424 INF: FPGA: Recv ZSGSRD 31241
17-03-17 17:26:00.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.128 -07 000000424 INF: FPGA: Recv ZSGSRD 31245
17-03-17 17:26:00.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.138 -07 000000424 INF: FPGA: Recv ZSGSRD 31248
17-03-17 17:26:00.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.148 -07 000000424 INF: FPGA: Recv ZSGSRD 31246
17-03-17 17:26:00.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.158 -07 000000424 INF: FPGA: Recv ZSGSRD 31239
17-03-17 17:26:00.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.168 -07 000000424 INF: FPGA: Recv ZSGSRD 31244
17-03-17 17:26:00.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.178 -07 000000561 INF: FPGA: Recv ZSGSRD 31249
17-03-17 17:26:00.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:00.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:00.188 -07 000000438 INF: FPGA: Recv ZSGSRD 31248
17-03-17 17:26:00.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.198 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:00.198 -07 000000561 INF: FPGA: Recv ZPIEZORD 27868
17-03-17 17:26:00.208 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:00.208 -07 000000431 INF: Z Motor: Piezo is near 39.5 V (nominally 0 to 100 V), expect near 47.0 V, since DAC is at 4.701 V. Piezo Error = -7.5 V.
17-03-17 17:26:00.208 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -141.0 um, Read 10 ADC samples: Avg = 31245 (-140.2 uncal um), Error = 0.8 uncal um, Median = 31246 (-140.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31239 (-140.2 uncal um), Max = 31249 (-140.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:26:00.208 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31245, posNoise = 4, negNoise = 6
17-03-17 17:26:00.208 -07 000000431 INF: Z Motor: After move to -0.141030, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:00.208 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:00.208 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:00.208 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:00.208 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:00.208 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:00.208 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:00.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:00.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:00.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:00.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:00.218 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:00.228 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 7 ms.
17-03-17 17:26:00.228 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms.
17-03-17 17:26:00.228 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:00.428 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-17 17:26:00.628 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 393
17-03-17 17:26:00.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 393
17-03-17 17:26:00.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:00.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:26:00.818 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:00.818 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:00.818 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall
17-03-17 17:26:01.208 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:26:01.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:01.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:01.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:01.498 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:01.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:01.518 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:01.588 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:01.588 -07 000000431 INF: Scanning Z-Position: -0.13453
17-03-17 17:26:01.588 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:01.588 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:01.598 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:01.598 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:01.798 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:01.798 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:01.798 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29388, sync = True, waitForSettling = True)
17-03-17 17:26:01.798 -07 000000431 INF: Z Motor: Moving to -0.134530 mm, started at -0.141048 mm, distance = 6.52 um
17-03-17 17:26:01.798 -07 000000431 INF: FPGA: Xmit ZDACW 29388\n [Z Motor]
17-03-17 17:26:01.798 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:26:01.808 -07 000000431 INF: FPGA: 'ZDACW 29388' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:01.808 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:01.808 -07 000000429 INF: FPGA: Recv ZDACR 29388
17-03-17 17:26:01.818 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:01.818 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:01.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:01.968 -07 000000569 INF: FPGA: Recv ZSGSRD 30233
17-03-17 17:26:01.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:01.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:01.978 -07 000000569 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:26:01.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:01.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:01.988 -07 000000569 INF: FPGA: Recv ZSGSRD 30233
17-03-17 17:26:01.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:01.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:01.998 -07 000000569 INF: FPGA: Recv ZSGSRD 30229
17-03-17 17:26:02.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:02.008 -07 000000569 INF: FPGA: Recv ZSGSRD 30233
17-03-17 17:26:02.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:02.018 -07 000000429 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:26:02.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:02.028 -07 000000569 INF: FPGA: Recv ZSGSRD 30230
17-03-17 17:26:02.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:02.038 -07 000000569 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:26:02.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:02.048 -07 000000429 INF: FPGA: Recv ZSGSRD 30229
17-03-17 17:26:02.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:02.058 -07 000000569 INF: FPGA: Recv ZSGSRD 30234
17-03-17 17:26:02.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.068 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:02.068 -07 000000569 INF: FPGA: Recv ZPIEZORD 26522
17-03-17 17:26:02.078 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:02.078 -07 000000431 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -8.2 V.
17-03-17 17:26:02.078 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30231 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30231 (-133.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30229 (-133.7 uncal um), Max = 30234 (-133.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:26:02.078 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30231, posNoise = 3, negNoise = 2
17-03-17 17:26:02.078 -07 000000431 INF: Z Motor: After move to -0.134530, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:02.078 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:02.078 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:02.078 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:02.078 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:02.078 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:02.088 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:02.088 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:02.088 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:02.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:02.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:02.088 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:02.098 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:02.098 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:02.108 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:02.298 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:02.498 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:02.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:02.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:02.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:02.688 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:02.698 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:02.698 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:26:03.088 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:03.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:03.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:03.098 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:03.198 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:03.208 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:03.208 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:03.218 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:03.218 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:03.418 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:03.418 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:03.418 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30699, sync = True, waitForSettling = True)
17-03-17 17:26:03.418 -07 000000431 INF: Z Motor: Moving to -0.140531 mm, started at -0.134534 mm, distance = -6.00 um
17-03-17 17:26:03.418 -07 000000431 INF: FPGA: Xmit ZDACW 30699\n [Z Motor]
17-03-17 17:26:03.428 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:26:03.428 -07 000000431 INF: FPGA: 'ZDACW 30699' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:26:03.428 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:03.428 -07 000000429 INF: FPGA: Recv ZDACR 30699
17-03-17 17:26:03.438 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.438 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:03.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.588 -07 000000569 INF: FPGA: Recv ZSGSRD 31172
17-03-17 17:26:03.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.598 -07 000000433 INF: FPGA: Recv ZSGSRD 31169
17-03-17 17:26:03.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.618 -07 000000569 INF: FPGA: Recv ZSGSRD 31177
17-03-17 17:26:03.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:26:03.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.648 -07 000000480 INF: FPGA: Recv ZSGSRD 31165
17-03-17 17:26:03.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:26:03.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.658 -07 000000632 INF: FPGA: Recv ZSGSRD 31163
17-03-17 17:26:03.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.668 -07 000000480 INF: FPGA: Recv ZSGSRD 31171
17-03-17 17:26:03.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.678 -07 000000632 INF: FPGA: Recv ZSGSRD 31164
17-03-17 17:26:03.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.688 -07 000000569 INF: FPGA: Recv ZSGSRD 31170
17-03-17 17:26:03.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.698 -07 000000433 INF: FPGA: Recv ZSGSRD 31173
17-03-17 17:26:03.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:03.708 -07 000000569 INF: FPGA: Recv ZSGSRD 31165
17-03-17 17:26:03.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.718 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:03.718 -07 000000502 INF: FPGA: Recv ZPIEZORD 27747
17-03-17 17:26:03.728 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:03.728 -07 000000431 INF: Z Motor: Piezo is near 39.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.684 V. Piezo Error = -7.6 V.
17-03-17 17:26:03.728 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31169 (-139.8 uncal um), Error = 0.8 uncal um, Median = 31170 (-139.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31163 (-139.7 uncal um), Max = 31177 (-139.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:26:03.728 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31169, posNoise = 8, negNoise = 6
17-03-17 17:26:03.728 -07 000000431 INF: Z Motor: After move to -0.140531, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:03.728 -07 000000431 INF: Z Motor: MoveAbsStepped took 304 ms)
17-03-17 17:26:03.728 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:03.728 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:03.728 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:03.728 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:03.738 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:03.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:03.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:26:03.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:03.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:03.738 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:03.748 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:03.748 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:03.748 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:03.948 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.031682,
17-03-17 17:26:03.948 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:04.148 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:04.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:04.148 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:04.148 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:04.338 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:04.338 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:04.338 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:26:04.738 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:26:04.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:04.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:04.738 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:26:04.938 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:05.008 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:05.008 -07 000000431 INF: Scanning Z-Position: -0.13403
17-03-17 17:26:05.008 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:05.008 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:05.018 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:05.018 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:05.218 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:05.218 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:05.218 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29279, sync = True, waitForSettling = True)
17-03-17 17:26:05.218 -07 000000431 INF: Z Motor: Moving to -0.134031 mm, started at -0.140560 mm, distance = 6.53 um
17-03-17 17:26:05.218 -07 000000431 INF: FPGA: Xmit ZDACW 29279\n [Z Motor]
17-03-17 17:26:05.228 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:26:05.228 -07 000000431 INF: FPGA: 'ZDACW 29279' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:26:05.228 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:05.228 -07 000000502 INF: FPGA: Recv ZDACR 29279
17-03-17 17:26:05.238 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:05.238 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:05.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.388 -07 000000569 INF: FPGA: Recv ZSGSRD 30158
17-03-17 17:26:05.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:05.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.398 -07 000000632 INF: FPGA: Recv ZSGSRD 30155
17-03-17 17:26:05.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.408 -07 000000541 INF: FPGA: Recv ZSGSRD 30154
17-03-17 17:26:05.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.418 -07 000000502 INF: FPGA: Recv ZSGSRD 30156
17-03-17 17:26:05.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.428 -07 000000541 INF: FPGA: Recv ZSGSRD 30160
17-03-17 17:26:05.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:05.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.438 -07 000000433 INF: FPGA: Recv ZSGSRD 30156
17-03-17 17:26:05.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.448 -07 000000569 INF: FPGA: Recv ZSGSRD 30150
17-03-17 17:26:05.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.458 -07 000000438 INF: FPGA: Recv ZSGSRD 30147
17-03-17 17:26:05.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.468 -07 000000569 INF: FPGA: Recv ZSGSRD 30155
17-03-17 17:26:05.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:05.478 -07 000000569 INF: FPGA: Recv ZSGSRD 30159
17-03-17 17:26:05.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.488 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:05.488 -07 000000569 INF: FPGA: Recv ZPIEZORD 26413
17-03-17 17:26:05.498 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:05.498 -07 000000431 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -8.3 V.
17-03-17 17:26:05.498 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30155 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30156 (-133.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30147 (-133.2 uncal um), Max = 30160 (-133.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:26:05.498 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30155, posNoise = 5, negNoise = 8
17-03-17 17:26:05.498 -07 000000431 INF: Z Motor: After move to -0.134031, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:05.498 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:05.498 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:05.498 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:05.498 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:05.498 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:05.508 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:05.508 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:05.508 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:05.508 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:05.508 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:05.508 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:05.518 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:05.518 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:05.528 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:05.728 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:05.918 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:05.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:05.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:05.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:06.108 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:06.118 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:06.118 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:26:06.498 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:06.508 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:26:06.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:06.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:06.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:06.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:06.718 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:06.728 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:06.728 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:06.738 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:06.738 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:06.938 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:06.938 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:06.938 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30590, sync = True, waitForSettling = True)
17-03-17 17:26:06.938 -07 000000431 INF: Z Motor: Moving to -0.140032 mm, started at -0.134045 mm, distance = -5.99 um
17-03-17 17:26:06.938 -07 000000431 INF: FPGA: Xmit ZDACW 30590\n [Z Motor]
17-03-17 17:26:06.938 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:26:06.948 -07 000000431 INF: FPGA: 'ZDACW 30590' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:06.948 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:06.948 -07 000000438 INF: FPGA: Recv ZDACR 30590
17-03-17 17:26:06.958 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:06.958 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:07.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.108 -07 000000438 INF: FPGA: Recv ZSGSRD 31087
17-03-17 17:26:07.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:07.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.118 -07 000000569 INF: FPGA: Recv ZSGSRD 31085
17-03-17 17:26:07.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.128 -07 000000569 INF: FPGA: Recv ZSGSRD 31092
17-03-17 17:26:07.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.138 -07 000000438 INF: FPGA: Recv ZSGSRD 31091
17-03-17 17:26:07.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.148 -07 000000569 INF: FPGA: Recv ZSGSRD 31096
17-03-17 17:26:07.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.158 -07 000000438 INF: FPGA: Recv ZSGSRD 31090
17-03-17 17:26:07.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.168 -07 000000438 INF: FPGA: Recv ZSGSRD 31084
17-03-17 17:26:07.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.178 -07 000000569 INF: FPGA: Recv ZSGSRD 31088
17-03-17 17:26:07.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.188 -07 000000569 INF: FPGA: Recv ZSGSRD 31086
17-03-17 17:26:07.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:07.198 -07 000000569 INF: FPGA: Recv ZSGSRD 31092
17-03-17 17:26:07.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.208 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:07.208 -07 000000569 INF: FPGA: Recv ZPIEZORD 27662
17-03-17 17:26:07.218 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:07.218 -07 000000431 INF: Z Motor: Piezo is near 39.1 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.668 V. Piezo Error = -7.6 V.
17-03-17 17:26:07.218 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31089 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31089 (-139.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31084 (-139.2 uncal um), Max = 31096 (-139.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:07.218 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31089, posNoise = 7, negNoise = 5
17-03-17 17:26:07.218 -07 000000431 INF: Z Motor: After move to -0.140032, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:07.218 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:26:07.218 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:07.218 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:07.218 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:07.218 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:07.218 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:07.218 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:07.218 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:07.218 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:07.228 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:07.228 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:07.238 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:26:07.238 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:26:07.238 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:07.438 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:07.638 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:07.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:07.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:07.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:26:07.828 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:07.828 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:07.828 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:26:08.228 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:08.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:08.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:08.228 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:08.428 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:08.488 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:08.488 -07 000000431 INF: Scanning Z-Position: -0.13353
17-03-17 17:26:08.498 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:08.498 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:08.508 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.508 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:08.708 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:08.708 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:08.708 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29170, sync = True, waitForSettling = True)
17-03-17 17:26:08.708 -07 000000431 INF: Z Motor: Moving to -0.133532 mm, started at -0.140046 mm, distance = 6.51 um
17-03-17 17:26:08.708 -07 000000431 INF: FPGA: Xmit ZDACW 29170\n [Z Motor]
17-03-17 17:26:08.708 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:26:08.718 -07 000000431 INF: FPGA: 'ZDACW 29170' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:08.718 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:08.718 -07 000000569 INF: FPGA: Recv ZDACR 29170
17-03-17 17:26:08.728 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.728 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:08.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.878 -07 000000438 INF: FPGA: Recv ZSGSRD 30077
17-03-17 17:26:08.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.888 -07 000000569 INF: FPGA: Recv ZSGSRD 30080
17-03-17 17:26:08.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.898 -07 000000438 INF: FPGA: Recv ZSGSRD 30073
17-03-17 17:26:08.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.908 -07 000000569 INF: FPGA: Recv ZSGSRD 30078
17-03-17 17:26:08.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30075
17-03-17 17:26:08.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.928 -07 000000569 INF: FPGA: Recv ZSGSRD 30077
17-03-17 17:26:08.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30076
17-03-17 17:26:08.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30077
17-03-17 17:26:08.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:08.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:08.978 -07 000000627 INF: FPGA: Recv ZSGSRD 30076
17-03-17 17:26:08.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:26:09.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:09.008 -07 000000618 INF: FPGA: Recv ZSGSRD 30076
17-03-17 17:26:09.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:26:09.018 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:09.018 -07 000000438 INF: FPGA: Recv ZPIEZORD 26355
17-03-17 17:26:09.028 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:09.028 -07 000000431 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.451 V. Piezo Error = -8.2 V.
17-03-17 17:26:09.028 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30076 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30076 (-132.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30073 (-132.7 uncal um), Max = 30080 (-132.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:26:09.028 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30076, posNoise = 4, negNoise = 3
17-03-17 17:26:09.028 -07 000000431 INF: Z Motor: After move to -0.133532, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:09.028 -07 000000431 INF: Z Motor: MoveAbsStepped took 315 ms)
17-03-17 17:26:09.028 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:09.028 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:09.028 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:09.028 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:09.028 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:09.028 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:09.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:09.038 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:09.038 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:09.038 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:09.048 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:26:09.048 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms.
17-03-17 17:26:09.048 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:09.248 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:09.308 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.024884,
17-03-17 17:26:09.448 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:09.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:09.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:09.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:26:09.638 -07 000000438 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:09.638 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:09.638 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:26:10.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:26:10.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:10.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:10.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:10.348 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:10.358 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:10.358 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:10.368 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:26:10.368 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:10.568 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:10.568 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:10.568 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30480, sync = True, waitForSettling = True)
17-03-17 17:26:10.568 -07 000000431 INF: Z Motor: Moving to -0.139528 mm, started at -0.133538 mm, distance = -5.99 um
17-03-17 17:26:10.568 -07 000000431 INF: FPGA: Xmit ZDACW 30480\n [Z Motor]
17-03-17 17:26:10.568 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:26:10.578 -07 000000431 INF: FPGA: 'ZDACW 30480' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:26:10.578 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:10.578 -07 000000618 INF: FPGA: Recv ZDACR 30480
17-03-17 17:26:10.588 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.588 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:10.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.738 -07 000000627 INF: FPGA: Recv ZSGSRD 31008
17-03-17 17:26:10.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:10.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.748 -07 000000627 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:26:10.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.758 -07 000000627 INF: FPGA: Recv ZSGSRD 31010
17-03-17 17:26:10.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.768 -07 000000627 INF: FPGA: Recv ZSGSRD 31010
17-03-17 17:26:10.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.778 -07 000000627 INF: FPGA: Recv ZSGSRD 31005
17-03-17 17:26:10.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.788 -07 000000618 INF: FPGA: Recv ZSGSRD 31009
17-03-17 17:26:10.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.798 -07 000000618 INF: FPGA: Recv ZSGSRD 31012
17-03-17 17:26:10.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.808 -07 000000627 INF: FPGA: Recv ZSGSRD 31007
17-03-17 17:26:10.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.818 -07 000000627 INF: FPGA: Recv ZSGSRD 31014
17-03-17 17:26:10.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:10.828 -07 000000627 INF: FPGA: Recv ZSGSRD 31004
17-03-17 17:26:10.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.838 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:10.838 -07 000000618 INF: FPGA: Recv ZPIEZORD 27588
17-03-17 17:26:10.848 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:10.848 -07 000000431 INF: Z Motor: Piezo is near 38.9 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -7.6 V.
17-03-17 17:26:10.848 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31009 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31010 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31004 (-138.7 uncal um), Max = 31014 (-138.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:10.848 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31009, posNoise = 5, negNoise = 5
17-03-17 17:26:10.848 -07 000000431 INF: Z Motor: After move to -0.139528, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:10.848 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:10.848 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:10.848 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:10.848 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:10.848 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:10.858 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:10.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:10.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:10.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:10.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:10.858 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:10.868 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:10.868 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:10.878 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:11.068 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:11.268 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:11.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:11.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:11.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:26:11.468 -07 000000618 INF: FPGA: Recv @CAMSNAP 588
17-03-17 17:26:11.468 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:11.468 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 592 ms overall
17-03-17 17:26:11.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:11.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:26:11.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:11.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:11.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:11.968 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:12.038 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:12.038 -07 000000431 INF: Scanning Z-Position: -0.13303
17-03-17 17:26:12.038 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:12.038 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:12.048 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:12.048 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:12.248 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:12.248 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:12.248 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29060, sync = True, waitForSettling = True)
17-03-17 17:26:12.248 -07 000000431 INF: Z Motor: Moving to -0.133028 mm, started at -0.139532 mm, distance = 6.50 um
17-03-17 17:26:12.248 -07 000000431 INF: FPGA: Xmit ZDACW 29060\n [Z Motor]
17-03-17 17:26:12.248 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:26:12.258 -07 000000431 INF: FPGA: 'ZDACW 29060' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:12.258 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:12.258 -07 000000433 INF: FPGA: Recv ZDACR 29060
17-03-17 17:26:12.268 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.268 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:12.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.418 -07 000000632 INF: FPGA: Recv ZSGSRD 30003
17-03-17 17:26:12.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:12.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29999
17-03-17 17:26:12.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.438 -07 000000632 INF: FPGA: Recv ZSGSRD 29999
17-03-17 17:26:12.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.448 -07 000000627 INF: FPGA: Recv ZSGSRD 29995
17-03-17 17:26:12.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.458 -07 000000632 INF: FPGA: Recv ZSGSRD 29996
17-03-17 17:26:12.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.468 -07 000000618 INF: FPGA: Recv ZSGSRD 30003
17-03-17 17:26:12.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.478 -07 000000627 INF: FPGA: Recv ZSGSRD 29989
17-03-17 17:26:12.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.488 -07 000000632 INF: FPGA: Recv ZSGSRD 29995
17-03-17 17:26:12.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.498 -07 000000618 INF: FPGA: Recv ZSGSRD 30001
17-03-17 17:26:12.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:12.508 -07 000000632 INF: FPGA: Recv ZSGSRD 30000
17-03-17 17:26:12.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.518 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:12.518 -07 000000627 INF: FPGA: Recv ZPIEZORD 26248
17-03-17 17:26:12.528 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:12.528 -07 000000431 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -8.3 V.
17-03-17 17:26:12.528 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29998 (-132.3 uncal um), Error = 0.8 uncal um, Median = 29999 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29989 (-132.2 uncal um), Max = 30003 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:26:12.528 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29998, posNoise = 5, negNoise = 9
17-03-17 17:26:12.528 -07 000000431 INF: Z Motor: After move to -0.133028, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:12.528 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:12.528 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:12.528 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:12.528 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:12.528 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:12.528 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:12.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:12.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:12.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:12.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:12.538 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:12.548 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:12.548 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:12.548 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:12.748 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:12.948 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:12.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:12.948 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:12.948 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:13.138 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:13.138 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:13.138 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:26:13.528 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:26:13.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:13.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:13.538 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:26:13.838 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:13.858 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:13.858 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:13.868 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:13.868 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:14.068 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:14.068 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 17:26:14.068 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30371, sync = True, waitForSettling = True)
17-03-17 17:26:14.068 -07 000000431 INF: Z Motor: Moving to -0.139030 mm, started at -0.133037 mm, distance = -5.99 um
17-03-17 17:26:14.068 -07 000000431 INF: FPGA: Xmit ZDACW 30371\n [Z Motor]
17-03-17 17:26:14.068 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:26:14.078 -07 000000431 INF: FPGA: 'ZDACW 30371' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:26:14.078 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:14.078 -07 000000561 INF: FPGA: Recv ZDACR 30371
17-03-17 17:26:14.088 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.088 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:14.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.238 -07 000000438 INF: FPGA: Recv ZSGSRD 30933
17-03-17 17:26:14.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:14.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.248 -07 000000618 INF: FPGA: Recv ZSGSRD 30938
17-03-17 17:26:14.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.258 -07 000000502 INF: FPGA: Recv ZSGSRD 30930
17-03-17 17:26:14.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.268 -07 000000618 INF: FPGA: Recv ZSGSRD 30930
17-03-17 17:26:14.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.278 -07 000000632 INF: FPGA: Recv ZSGSRD 30939
17-03-17 17:26:14.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.288 -07 000000433 INF: FPGA: Recv ZSGSRD 30931
17-03-17 17:26:14.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.298 -07 000000502 INF: FPGA: Recv ZSGSRD 30934
17-03-17 17:26:14.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.308 -07 000000433 INF: FPGA: Recv ZSGSRD 30933
17-03-17 17:26:14.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.318 -07 000000438 INF: FPGA: Recv ZSGSRD 30931
17-03-17 17:26:14.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:14.328 -07 000000632 INF: FPGA: Recv ZSGSRD 30936
17-03-17 17:26:14.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.338 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:14.338 -07 000000618 INF: FPGA: Recv ZPIEZORD 27480
17-03-17 17:26:14.348 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:14.348 -07 000000431 INF: Z Motor: Piezo is near 38.7 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -7.6 V.
17-03-17 17:26:14.348 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30934 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30933 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30930 (-138.2 uncal um), Max = 30939 (-138.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:26:14.348 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30934, posNoise = 5, negNoise = 4
17-03-17 17:26:14.348 -07 000000431 INF: Z Motor: After move to -0.139030, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:14.348 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:26:14.348 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:14.348 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:14.348 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:14.348 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:14.348 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:14.348 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:14.358 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:14.358 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:14.358 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:14.358 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:14.358 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-17 17:26:14.358 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms.
17-03-17 17:26:14.388 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:14.578 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:14.678 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.003063,
17-03-17 17:26:14.778 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:14.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:14.778 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:14.788 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:26:14.968 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:14.968 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:14.978 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 604 ms overall
17-03-17 17:26:15.368 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:26:15.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:15.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:15.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:15.578 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:15.648 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:15.648 -07 000000431 INF: Scanning Z-Position: -0.13253
17-03-17 17:26:15.648 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:15.648 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:15.658 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:15.658 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:15.858 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:15.858 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:15.858 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28951, sync = True, waitForSettling = True)
17-03-17 17:26:15.858 -07 000000431 INF: Z Motor: Moving to -0.132529 mm, started at -0.139050 mm, distance = 6.52 um
17-03-17 17:26:15.858 -07 000000431 INF: FPGA: Xmit ZDACW 28951\n [Z Motor]
17-03-17 17:26:15.858 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:26:15.868 -07 000000431 INF: FPGA: 'ZDACW 28951' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:15.868 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:15.868 -07 000000458 INF: FPGA: Recv ZDACR 28951
17-03-17 17:26:15.878 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:15.878 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:16.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.028 -07 000000632 INF: FPGA: Recv ZSGSRD 29927
17-03-17 17:26:16.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:16.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.038 -07 000000632 INF: FPGA: Recv ZSGSRD 29918
17-03-17 17:26:16.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.048 -07 000000632 INF: FPGA: Recv ZSGSRD 29915
17-03-17 17:26:16.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.058 -07 000000632 INF: FPGA: Recv ZSGSRD 29920
17-03-17 17:26:16.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.068 -07 000000632 INF: FPGA: Recv ZSGSRD 29922
17-03-17 17:26:16.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.078 -07 000000458 INF: FPGA: Recv ZSGSRD 29919
17-03-17 17:26:16.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.088 -07 000000458 INF: FPGA: Recv ZSGSRD 29920
17-03-17 17:26:16.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.098 -07 000000632 INF: FPGA: Recv ZSGSRD 29919
17-03-17 17:26:16.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.108 -07 000000632 INF: FPGA: Recv ZSGSRD 29925
17-03-17 17:26:16.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:16.118 -07 000000569 INF: FPGA: Recv ZSGSRD 29918
17-03-17 17:26:16.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.128 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:16.128 -07 000000382 INF: FPGA: Recv ZPIEZORD 26147
17-03-17 17:26:16.138 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:16.138 -07 000000431 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -8.3 V.
17-03-17 17:26:16.138 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29920 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29920 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29915 (-131.7 uncal um), Max = 29927 (-131.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:16.138 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29920, posNoise = 7, negNoise = 5
17-03-17 17:26:16.138 -07 000000431 INF: Z Motor: After move to -0.132529, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:16.138 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:16.138 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:16.138 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:16.138 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:16.138 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:16.138 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:16.138 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:16.148 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:16.148 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:16.148 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:16.148 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:16.158 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:16.158 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:16.158 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:16.358 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:16.498 -07 000000632 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:16.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:16.558 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:16.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:16.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:16.558 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:16.758 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:16.758 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:16.758 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 591 ms to get response, and 593 ms overall
17-03-17 17:26:17.148 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:17.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:17.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:17.158 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:17.358 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:17.368 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:17.368 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:17.378 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:17.378 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:17.578 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:17.578 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:17.578 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30262, sync = True, waitForSettling = True)
17-03-17 17:26:17.578 -07 000000431 INF: Z Motor: Moving to -0.138531 mm, started at -0.132536 mm, distance = -5.99 um
17-03-17 17:26:17.578 -07 000000431 INF: FPGA: Xmit ZDACW 30262\n [Z Motor]
17-03-17 17:26:17.578 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:26:17.588 -07 000000431 INF: FPGA: 'ZDACW 30262' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:17.588 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:17.588 -07 000000569 INF: FPGA: Recv ZDACR 30262
17-03-17 17:26:17.598 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.598 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:17.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.748 -07 000000632 INF: FPGA: Recv ZSGSRD 30859
17-03-17 17:26:17.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:17.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.758 -07 000000569 INF: FPGA: Recv ZSGSRD 30860
17-03-17 17:26:17.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.768 -07 000000632 INF: FPGA: Recv ZSGSRD 30856
17-03-17 17:26:17.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.778 -07 000000541 INF: FPGA: Recv ZSGSRD 30851
17-03-17 17:26:17.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.788 -07 000000632 INF: FPGA: Recv ZSGSRD 30855
17-03-17 17:26:17.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.798 -07 000000541 INF: FPGA: Recv ZSGSRD 30853
17-03-17 17:26:17.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.808 -07 000000458 INF: FPGA: Recv ZSGSRD 30858
17-03-17 17:26:17.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.818 -07 000000569 INF: FPGA: Recv ZSGSRD 30852
17-03-17 17:26:17.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30855
17-03-17 17:26:17.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:17.838 -07 000000632 INF: FPGA: Recv ZSGSRD 30859
17-03-17 17:26:17.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.848 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:17.848 -07 000000569 INF: FPGA: Recv ZPIEZORD 27379
17-03-17 17:26:17.858 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:17.858 -07 000000431 INF: Z Motor: Piezo is near 38.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -7.7 V.
17-03-17 17:26:17.858 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30856 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30856 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30851 (-137.7 uncal um), Max = 30860 (-137.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:17.858 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30856, posNoise = 4, negNoise = 5
17-03-17 17:26:17.858 -07 000000431 INF: Z Motor: After move to -0.138531, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:17.858 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:17.858 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:17.858 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:17.858 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:17.858 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:17.858 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:17.858 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:17.868 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:17.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:17.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:17.868 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:17.878 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:26:17.878 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:26:17.878 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:18.078 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:18.278 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:18.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:18.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:18.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:26:18.468 -07 000000569 INF: FPGA: Recv @CAMSNAP 587
17-03-17 17:26:18.468 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:18.468 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 591 ms overall
17-03-17 17:26:18.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:18.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:18.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:18.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:19.078 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:19.148 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:19.148 -07 000000431 INF: Scanning Z-Position: -0.13203
17-03-17 17:26:19.148 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:19.148 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:19.158 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:19.158 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:19.358 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:19.358 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:19.358 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28842, sync = True, waitForSettling = True)
17-03-17 17:26:19.358 -07 000000431 INF: Z Motor: Moving to -0.132030 mm, started at -0.138549 mm, distance = 6.52 um
17-03-17 17:26:19.358 -07 000000431 INF: FPGA: Xmit ZDACW 28842\n [Z Motor]
17-03-17 17:26:19.358 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:26:19.368 -07 000000431 INF: FPGA: 'ZDACW 28842' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:19.368 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:19.368 -07 000000632 INF: FPGA: Recv ZDACR 28842
17-03-17 17:26:19.378 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.378 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:19.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.528 -07 000000632 INF: FPGA: Recv ZSGSRD 29846
17-03-17 17:26:19.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:19.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.538 -07 000000541 INF: FPGA: Recv ZSGSRD 29848
17-03-17 17:26:19.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29834
17-03-17 17:26:19.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29840
17-03-17 17:26:19.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.568 -07 000000424 INF: FPGA: Recv ZSGSRD 29836
17-03-17 17:26:19.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29849
17-03-17 17:26:19.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.588 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-17 17:26:19.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.598 -07 000000569 INF: FPGA: Recv ZSGSRD 29846
17-03-17 17:26:19.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29839
17-03-17 17:26:19.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:19.618 -07 000000569 INF: FPGA: Recv ZSGSRD 29848
17-03-17 17:26:19.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:19.628 -07 000000382 INF: FPGA: Recv ZPIEZORD 26039
17-03-17 17:26:19.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:19.638 -07 000000431 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -8.4 V.
17-03-17 17:26:19.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29843 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29845 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29849 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:26:19.638 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29843, posNoise = 6, negNoise = 9
17-03-17 17:26:19.638 -07 000000431 INF: Z Motor: After move to -0.132030, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:19.638 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:19.638 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:19.638 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:19.638 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:19.638 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:19.638 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:19.638 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:19.648 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:26:19.648 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:19.648 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:19.648 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:19.658 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:26:19.658 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:19.658 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:19.858 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:20.048 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.000345,
17-03-17 17:26:20.058 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:20.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:20.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:20.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:20.248 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:20.248 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:20.248 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:26:20.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:26:20.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:20.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:20.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 586 ms.
17-03-17 17:26:20.848 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:20.858 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:20.858 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:20.868 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:26:20.868 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:21.068 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:21.068 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 17:26:21.068 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30153, sync = True, waitForSettling = True)
17-03-17 17:26:21.068 -07 000000431 INF: Z Motor: Moving to -0.138032 mm, started at -0.132041 mm, distance = -5.99 um
17-03-17 17:26:21.068 -07 000000431 INF: FPGA: Xmit ZDACW 30153\n [Z Motor]
17-03-17 17:26:21.078 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:26:21.078 -07 000000431 INF: FPGA: 'ZDACW 30153' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:26:21.078 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:21.078 -07 000000569 INF: FPGA: Recv ZDACR 30153
17-03-17 17:26:21.088 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:21.088 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:21.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.238 -07 000000569 INF: FPGA: Recv ZSGSRD 30777
17-03-17 17:26:21.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:21.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.248 -07 000000569 INF: FPGA: Recv ZSGSRD 30779
17-03-17 17:26:21.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.258 -07 000000502 INF: FPGA: Recv ZSGSRD 30782
17-03-17 17:26:21.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.268 -07 000000429 INF: FPGA: Recv ZSGSRD 30777
17-03-17 17:26:21.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.278 -07 000000502 INF: FPGA: Recv ZSGSRD 30783
17-03-17 17:26:21.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.288 -07 000000569 INF: FPGA: Recv ZSGSRD 30780
17-03-17 17:26:21.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.298 -07 000000502 INF: FPGA: Recv ZSGSRD 30781
17-03-17 17:26:21.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.308 -07 000000569 INF: FPGA: Recv ZSGSRD 30782
17-03-17 17:26:21.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.318 -07 000000627 INF: FPGA: Recv ZSGSRD 30776
17-03-17 17:26:21.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:21.328 -07 000000569 INF: FPGA: Recv ZSGSRD 30775
17-03-17 17:26:21.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.338 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:21.338 -07 000000429 INF: FPGA: Recv ZPIEZORD 27310
17-03-17 17:26:21.348 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:21.348 -07 000000431 INF: Z Motor: Piezo is near 38.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -7.7 V.
17-03-17 17:26:21.348 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30779 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30780 (-137.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30775 (-137.2 uncal um), Max = 30783 (-137.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:26:21.348 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30779, posNoise = 4, negNoise = 4
17-03-17 17:26:21.348 -07 000000431 INF: Z Motor: After move to -0.138032, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:21.348 -07 000000431 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 17:26:21.348 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:21.348 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:21.348 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:21.348 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:21.348 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:21.348 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:21.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:21.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:21.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:21.358 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:21.368 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:26:21.368 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:26:21.368 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:21.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:21.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:21.568 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:26:21.768 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:26:21.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:26:21.768 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:21.768 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:21.958 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:21.958 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:21.958 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:26:22.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:22.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:22.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:22.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:22.558 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:22.728 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:22.728 -07 000000431 INF: Scanning Z-Position: -0.13153
17-03-17 17:26:22.728 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:22.738 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:22.738 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:26:22.738 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:22.938 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:22.938 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:26:22.938 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28733, sync = True, waitForSettling = True)
17-03-17 17:26:22.938 -07 000000431 INF: Z Motor: Moving to -0.131531 mm, started at -0.138054 mm, distance = 6.52 um
17-03-17 17:26:22.938 -07 000000431 INF: FPGA: Xmit ZDACW 28733\n [Z Motor]
17-03-17 17:26:22.938 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:26:22.948 -07 000000431 INF: FPGA: 'ZDACW 28733' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:26:22.948 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:22.948 -07 000000433 INF: FPGA: Recv ZDACR 28733
17-03-17 17:26:22.958 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:22.958 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:23.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.108 -07 000000569 INF: FPGA: Recv ZSGSRD 29765
17-03-17 17:26:23.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:23.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.118 -07 000000561 INF: FPGA: Recv ZSGSRD 29763
17-03-17 17:26:23.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.128 -07 000000569 INF: FPGA: Recv ZSGSRD 29768
17-03-17 17:26:23.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.138 -07 000000627 INF: FPGA: Recv ZSGSRD 29766
17-03-17 17:26:23.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.148 -07 000000569 INF: FPGA: Recv ZSGSRD 29758
17-03-17 17:26:23.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.158 -07 000000433 INF: FPGA: Recv ZSGSRD 29766
17-03-17 17:26:23.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.168 -07 000000429 INF: FPGA: Recv ZSGSRD 29770
17-03-17 17:26:23.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.178 -07 000000433 INF: FPGA: Recv ZSGSRD 29762
17-03-17 17:26:23.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.188 -07 000000569 INF: FPGA: Recv ZSGSRD 29766
17-03-17 17:26:23.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:23.198 -07 000000502 INF: FPGA: Recv ZSGSRD 29762
17-03-17 17:26:23.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.208 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:23.208 -07 000000569 INF: FPGA: Recv ZPIEZORD 25992
17-03-17 17:26:23.218 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:23.218 -07 000000431 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -8.3 V.
17-03-17 17:26:23.218 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29765 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29766 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29758 (-130.7 uncal um), Max = 29770 (-130.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:26:23.218 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29765, posNoise = 5, negNoise = 7
17-03-17 17:26:23.218 -07 000000431 INF: Z Motor: After move to -0.131531, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:23.218 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:26:23.218 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:23.218 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:23.218 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:23.218 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:23.218 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:23.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:23.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:23.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:23.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:23.228 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:23.238 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:23.238 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:23.238 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:23.438 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:23.638 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:23.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:23.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:23.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:23.828 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:23.828 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:23.828 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:26:24.228 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:26:24.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:24.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:24.228 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:26:24.428 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:24.438 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:24.438 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:24.448 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:24.448 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:24.648 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:24.648 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:24.648 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30043, sync = True, waitForSettling = True)
17-03-17 17:26:24.648 -07 000000431 INF: Z Motor: Moving to -0.137528 mm, started at -0.131540 mm, distance = -5.99 um
17-03-17 17:26:24.648 -07 000000431 INF: FPGA: Xmit ZDACW 30043\n [Z Motor]
17-03-17 17:26:24.648 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:26:24.658 -07 000000431 INF: FPGA: 'ZDACW 30043' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:26:24.658 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:24.658 -07 000000618 INF: FPGA: Recv ZDACR 30043
17-03-17 17:26:24.668 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.668 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:24.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.818 -07 000000502 INF: FPGA: Recv ZSGSRD 30700
17-03-17 17:26:24.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:24.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.828 -07 000000433 INF: FPGA: Recv ZSGSRD 30702
17-03-17 17:26:24.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.838 -07 000000561 INF: FPGA: Recv ZSGSRD 30701
17-03-17 17:26:24.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.848 -07 000000433 INF: FPGA: Recv ZSGSRD 30700
17-03-17 17:26:24.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.858 -07 000000502 INF: FPGA: Recv ZSGSRD 30702
17-03-17 17:26:24.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.868 -07 000000561 INF: FPGA: Recv ZSGSRD 30701
17-03-17 17:26:24.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.878 -07 000000502 INF: FPGA: Recv ZSGSRD 30695
17-03-17 17:26:24.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.888 -07 000000502 INF: FPGA: Recv ZSGSRD 30696
17-03-17 17:26:24.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.898 -07 000000502 INF: FPGA: Recv ZSGSRD 30700
17-03-17 17:26:24.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:24.908 -07 000000561 INF: FPGA: Recv ZSGSRD 30703
17-03-17 17:26:24.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.918 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:24.918 -07 000000502 INF: FPGA: Recv ZPIEZORD 27231
17-03-17 17:26:24.928 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:24.928 -07 000000431 INF: Z Motor: Piezo is near 38.2 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -7.7 V.
17-03-17 17:26:24.928 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30700 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30700 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30695 (-136.7 uncal um), Max = 30703 (-136.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:24.928 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30700, posNoise = 3, negNoise = 5
17-03-17 17:26:24.928 -07 000000431 INF: Z Motor: After move to -0.137528, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:24.928 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:26:24.928 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:24.928 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:24.928 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:24.928 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:24.938 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:24.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:24.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:24.938 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:24.938 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:24.938 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:24.948 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:24.948 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:24.958 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:25.148 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:25.348 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:25.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:25.358 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:25.358 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:25.428 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.02213,
17-03-17 17:26:25.548 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:25.548 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:25.548 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 589 ms overall
17-03-17 17:26:25.938 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 584 ms.
17-03-17 17:26:25.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:25.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:25.948 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:26:26.048 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:26.108 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:26.108 -07 000000431 INF: Scanning Z-Position: -0.13103
17-03-17 17:26:26.118 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:26.118 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:26.128 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.128 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:26.328 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:26.328 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 17:26:26.338 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28624, sync = True, waitForSettling = True)
17-03-17 17:26:26.338 -07 000000431 INF: Z Motor: Moving to -0.131032 mm, started at -0.137547 mm, distance = 6.51 um
17-03-17 17:26:26.338 -07 000000431 INF: FPGA: Xmit ZDACW 28624\n [Z Motor]
17-03-17 17:26:26.338 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:26:26.348 -07 000000431 INF: FPGA: 'ZDACW 28624' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.348 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:26.348 -07 000000502 INF: FPGA: Recv ZDACR 28624
17-03-17 17:26:26.358 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.358 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:26.498 -07 000000632 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:26.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:26.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.508 -07 000000438 INF: FPGA: Recv ZSGSRD 29686
17-03-17 17:26:26.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:26.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29684
17-03-17 17:26:26.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.528 -07 000000438 INF: FPGA: Recv ZSGSRD 29686
17-03-17 17:26:26.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29690
17-03-17 17:26:26.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29687
17-03-17 17:26:26.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.558 -07 000000632 INF: FPGA: Recv ZSGSRD 29690
17-03-17 17:26:26.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.568 -07 000000438 INF: FPGA: Recv ZSGSRD 29687
17-03-17 17:26:26.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29688
17-03-17 17:26:26.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.588 -07 000000438 INF: FPGA: Recv ZSGSRD 29685
17-03-17 17:26:26.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:26.598 -07 000000502 INF: FPGA: Recv ZSGSRD 29686
17-03-17 17:26:26.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.608 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:26.608 -07 000000438 INF: FPGA: Recv ZPIEZORD 25905
17-03-17 17:26:26.618 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:26.618 -07 000000431 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -8.3 V.
17-03-17 17:26:26.618 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29687 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29686 (-130.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29684 (-130.2 uncal um), Max = 29690 (-130.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:26:26.618 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29687, posNoise = 3, negNoise = 3
17-03-17 17:26:26.618 -07 000000431 INF: Z Motor: After move to -0.131032, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:26.618 -07 000000431 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:26:26.618 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:26.618 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:26.618 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:26.618 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:26.618 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:26.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:26.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:26.618 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:26.628 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:26.628 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:26.638 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:26:26.638 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:26:26.638 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:26.838 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:27.038 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:27.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:27.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:27.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:26:27.228 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:27.228 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:27.228 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 592 ms overall
17-03-17 17:26:27.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:26:27.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:27.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:27.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:26:27.938 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:27.948 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:27.948 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:27.958 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:27.958 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:28.158 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:28.158 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:28.158 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29934, sync = True, waitForSettling = True)
17-03-17 17:26:28.158 -07 000000431 INF: Z Motor: Moving to -0.137029 mm, started at -0.131039 mm, distance = -5.99 um
17-03-17 17:26:28.158 -07 000000431 INF: FPGA: Xmit ZDACW 29934\n [Z Motor]
17-03-17 17:26:28.158 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:26:28.168 -07 000000431 INF: FPGA: 'ZDACW 29934' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:28.168 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:28.168 -07 000000541 INF: FPGA: Recv ZDACR 29934
17-03-17 17:26:28.178 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.178 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:28.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.328 -07 000000632 INF: FPGA: Recv ZSGSRD 30622
17-03-17 17:26:28.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:28.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.338 -07 000000458 INF: FPGA: Recv ZSGSRD 30621
17-03-17 17:26:28.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.348 -07 000000382 INF: FPGA: Recv ZSGSRD 30625
17-03-17 17:26:28.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.358 -07 000000458 INF: FPGA: Recv ZSGSRD 30618
17-03-17 17:26:28.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.368 -07 000000458 INF: FPGA: Recv ZSGSRD 30619
17-03-17 17:26:28.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.378 -07 000000632 INF: FPGA: Recv ZSGSRD 30624
17-03-17 17:26:28.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.388 -07 000000502 INF: FPGA: Recv ZSGSRD 30621
17-03-17 17:26:28.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.398 -07 000000424 INF: FPGA: Recv ZSGSRD 30623
17-03-17 17:26:28.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.408 -07 000000382 INF: FPGA: Recv ZSGSRD 30616
17-03-17 17:26:28.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:28.418 -07 000000458 INF: FPGA: Recv ZSGSRD 30619
17-03-17 17:26:28.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.428 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:28.428 -07 000000480 INF: FPGA: Recv ZPIEZORD 27123
17-03-17 17:26:28.438 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:28.438 -07 000000431 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -7.7 V.
17-03-17 17:26:28.438 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30621 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30621 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30616 (-136.2 uncal um), Max = 30625 (-136.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:28.438 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30621, posNoise = 4, negNoise = 5
17-03-17 17:26:28.438 -07 000000431 INF: Z Motor: After move to -0.137029, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:28.438 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:28.438 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:28.438 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:28.438 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:28.438 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:28.438 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:28.438 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:28.448 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:28.448 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:28.448 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:28.448 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:28.458 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:28.458 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:28.458 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:28.658 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:28.858 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:28.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:28.858 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:28.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:26:29.048 -07 000000541 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:29.048 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:29.048 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:26:29.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:26:29.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:29.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:29.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:29.648 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:29.718 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:29.718 -07 000000431 INF: Scanning Z-Position: -0.13053
17-03-17 17:26:29.718 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:29.718 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:29.728 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:29.728 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:29.928 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:29.928 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 17:26:29.938 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28514, sync = True, waitForSettling = True)
17-03-17 17:26:29.938 -07 000000431 INF: Z Motor: Moving to -0.130529 mm, started at -0.137039 mm, distance = 6.51 um
17-03-17 17:26:29.938 -07 000000431 INF: FPGA: Xmit ZDACW 28514\n [Z Motor]
17-03-17 17:26:29.938 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:26:29.948 -07 000000431 INF: FPGA: 'ZDACW 28514' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:29.948 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:29.948 -07 000000382 INF: FPGA: Recv ZDACR 28514
17-03-17 17:26:29.958 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:29.958 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:30.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.108 -07 000000480 INF: FPGA: Recv ZSGSRD 29608
17-03-17 17:26:30.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:30.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29612
17-03-17 17:26:30.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29609
17-03-17 17:26:30.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.138 -07 000000480 INF: FPGA: Recv ZSGSRD 29608
17-03-17 17:26:30.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29611
17-03-17 17:26:30.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:26:30.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.168 -07 000000382 INF: FPGA: Recv ZSGSRD 29613
17-03-17 17:26:30.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29607
17-03-17 17:26:30.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29611
17-03-17 17:26:30.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.198 -07 000000480 INF: FPGA: Recv ZSGSRD 29611
17-03-17 17:26:30.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:30.208 -07 000000480 INF: FPGA: Recv ZSGSRD 29611
17-03-17 17:26:30.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.218 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:30.218 -07 000000480 INF: FPGA: Recv ZPIEZORD 25812
17-03-17 17:26:30.228 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:30.228 -07 000000431 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -8.4 V.
17-03-17 17:26:30.228 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29610 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29611 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29607 (-129.7 uncal um), Max = 29613 (-129.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:26:30.228 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29610, posNoise = 3, negNoise = 3
17-03-17 17:26:30.228 -07 000000431 INF: Z Motor: After move to -0.130529, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:30.228 -07 000000431 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 17:26:30.228 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:30.228 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:30.228 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:30.228 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:30.238 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:30.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:30.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:30.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:30.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:30.238 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:30.248 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:30.248 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:30.258 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:30.448 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:30.648 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:30.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:30.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:30.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:30.788 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.02213,
17-03-17 17:26:30.838 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:30.848 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:30.848 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 589 ms overall
17-03-17 17:26:31.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:31.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:31.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:31.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:31.548 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:31.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:31.558 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:31.568 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:31.568 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:31.578 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:31.578 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:31.778 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:31.778 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:31.778 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29825, sync = True, waitForSettling = True)
17-03-17 17:26:31.778 -07 000000431 INF: Z Motor: Moving to -0.136530 mm, started at -0.130544 mm, distance = -5.99 um
17-03-17 17:26:31.778 -07 000000431 INF: FPGA: Xmit ZDACW 29825\n [Z Motor]
17-03-17 17:26:31.778 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:26:31.788 -07 000000431 INF: FPGA: 'ZDACW 29825' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:31.788 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:31.788 -07 000000541 INF: FPGA: Recv ZDACR 29825
17-03-17 17:26:31.798 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:31.798 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:31.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:31.948 -07 000000541 INF: FPGA: Recv ZSGSRD 30550
17-03-17 17:26:31.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:31.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:31.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30546
17-03-17 17:26:31.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:31.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:31.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30539
17-03-17 17:26:31.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:31.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:31.978 -07 000000433 INF: FPGA: Recv ZSGSRD 30551
17-03-17 17:26:31.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:31.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:31.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30546
17-03-17 17:26:31.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:31.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:31.998 -07 000000433 INF: FPGA: Recv ZSGSRD 30541
17-03-17 17:26:32.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:32.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:32.008 -07 000000433 INF: FPGA: Recv ZSGSRD 30539
17-03-17 17:26:32.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:32.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:32.018 -07 000000502 INF: FPGA: Recv ZSGSRD 30540
17-03-17 17:26:32.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:32.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:32.028 -07 000000502 INF: FPGA: Recv ZSGSRD 30546
17-03-17 17:26:32.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:32.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:32.038 -07 000000502 INF: FPGA: Recv ZSGSRD 30542
17-03-17 17:26:32.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:32.048 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:32.048 -07 000000502 INF: FPGA: Recv ZPIEZORD 27033
17-03-17 17:26:32.058 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:32.058 -07 000000431 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -7.8 V.
17-03-17 17:26:32.058 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30544 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30544 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30539 (-135.7 uncal um), Max = 30551 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:32.058 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30544, posNoise = 7, negNoise = 5
17-03-17 17:26:32.058 -07 000000431 INF: Z Motor: After move to -0.136530, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:32.058 -07 000000431 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:26:32.058 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:32.058 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:32.058 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:32.058 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:32.058 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:32.068 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:32.068 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:32.068 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:32.068 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:32.068 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:32.078 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:26:32.078 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:32.078 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:32.278 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:32.478 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:32.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:32.478 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:32.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:26:32.668 -07 000000541 INF: FPGA: Recv @CAMSNAP 587
17-03-17 17:26:32.678 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:32.678 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 591 ms overall
17-03-17 17:26:33.068 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:26:33.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:33.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:33.068 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:33.278 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:33.348 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:33.348 -07 000000431 INF: Scanning Z-Position: -0.13003
17-03-17 17:26:33.348 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:33.348 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:33.358 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:33.358 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:33.558 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:33.558 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:26:33.558 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28405, sync = True, waitForSettling = True)
17-03-17 17:26:33.558 -07 000000431 INF: Z Motor: Moving to -0.130030 mm, started at -0.136544 mm, distance = 6.51 um
17-03-17 17:26:33.558 -07 000000431 INF: FPGA: Xmit ZDACW 28405\n [Z Motor]
17-03-17 17:26:33.558 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:26:33.568 -07 000000431 INF: FPGA: 'ZDACW 28405' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:26:33.568 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:33.568 -07 000000569 INF: FPGA: Recv ZDACR 28405
17-03-17 17:26:33.578 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.578 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:33.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.728 -07 000000569 INF: FPGA: Recv ZSGSRD 29535
17-03-17 17:26:33.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:33.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.738 -07 000000627 INF: FPGA: Recv ZSGSRD 29531
17-03-17 17:26:33.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.748 -07 000000627 INF: FPGA: Recv ZSGSRD 29527
17-03-17 17:26:33.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.758 -07 000000627 INF: FPGA: Recv ZSGSRD 29531
17-03-17 17:26:33.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.768 -07 000000627 INF: FPGA: Recv ZSGSRD 29527
17-03-17 17:26:33.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29538
17-03-17 17:26:33.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.788 -07 000000627 INF: FPGA: Recv ZSGSRD 29532
17-03-17 17:26:33.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.798 -07 000000458 INF: FPGA: Recv ZSGSRD 29525
17-03-17 17:26:33.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.808 -07 000000458 INF: FPGA: Recv ZSGSRD 29534
17-03-17 17:26:33.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:33.818 -07 000000458 INF: FPGA: Recv ZSGSRD 29527
17-03-17 17:26:33.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.828 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:33.828 -07 000000458 INF: FPGA: Recv ZPIEZORD 25738
17-03-17 17:26:33.838 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:33.838 -07 000000431 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -8.4 V.
17-03-17 17:26:33.838 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29531 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29525 (-129.2 uncal um), Max = 29538 (-129.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:26:33.838 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 7, negNoise = 6
17-03-17 17:26:33.838 -07 000000431 INF: Z Motor: After move to -0.130030, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:33.838 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:26:33.838 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:33.838 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:33.838 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:33.848 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:33.848 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:33.848 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:33.848 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:33.848 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:33.848 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:33.848 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:33.868 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:33.868 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:33.868 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:34.068 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:34.268 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:34.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:34.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:34.268 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:34.458 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:34.458 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:34.458 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 593 ms overall
17-03-17 17:26:34.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:34.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:34.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:34.858 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:34.958 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:34.968 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:34.968 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:34.978 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:34.978 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:35.178 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:35.178 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:35.178 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29716, sync = True, waitForSettling = True)
17-03-17 17:26:35.178 -07 000000431 INF: Z Motor: Moving to -0.136031 mm, started at -0.130037 mm, distance = -5.99 um
17-03-17 17:26:35.178 -07 000000431 INF: FPGA: Xmit ZDACW 29716\n [Z Motor]
17-03-17 17:26:35.178 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:26:35.188 -07 000000431 INF: FPGA: 'ZDACW 29716' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:35.188 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:35.188 -07 000000458 INF: FPGA: Recv ZDACR 29716
17-03-17 17:26:35.198 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.198 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:35.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.348 -07 000000458 INF: FPGA: Recv ZSGSRD 30463
17-03-17 17:26:35.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:35.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.358 -07 000000458 INF: FPGA: Recv ZSGSRD 30467
17-03-17 17:26:35.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.368 -07 000000458 INF: FPGA: Recv ZSGSRD 30467
17-03-17 17:26:35.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.378 -07 000000458 INF: FPGA: Recv ZSGSRD 30465
17-03-17 17:26:35.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.388 -07 000000458 INF: FPGA: Recv ZSGSRD 30465
17-03-17 17:26:35.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:35.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.398 -07 000000458 INF: FPGA: Recv ZSGSRD 30467
17-03-17 17:26:35.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.408 -07 000000458 INF: FPGA: Recv ZSGSRD 30468
17-03-17 17:26:35.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.418 -07 000000561 INF: FPGA: Recv ZSGSRD 30465
17-03-17 17:26:35.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.428 -07 000000458 INF: FPGA: Recv ZSGSRD 30464
17-03-17 17:26:35.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:35.438 -07 000000458 INF: FPGA: Recv ZSGSRD 30463
17-03-17 17:26:35.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.448 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:35.448 -07 000000458 INF: FPGA: Recv ZPIEZORD 26953
17-03-17 17:26:35.458 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:35.458 -07 000000431 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -7.8 V.
17-03-17 17:26:35.458 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30465 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30465 (-135.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30463 (-135.2 uncal um), Max = 30468 (-135.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:26:35.458 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30465, posNoise = 3, negNoise = 2
17-03-17 17:26:35.458 -07 000000431 INF: Z Motor: After move to -0.136031, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:35.458 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:35.458 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:35.458 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:35.458 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:35.458 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:35.458 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:35.458 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:35.468 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 17:26:35.468 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:35.468 -07 000000424 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:35.468 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:35.478 -07 000000424 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:26:35.478 -07 000000424 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:35.478 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:35.678 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:35.878 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:35.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:35.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:35.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:26:36.068 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:36.068 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:36.068 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall
17-03-17 17:26:36.168 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06299,
17-03-17 17:26:36.458 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:26:36.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:36.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:36.468 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 587 ms.
17-03-17 17:26:36.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:36.678 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:36.678 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:36.748 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:36.748 -07 000000431 INF: Scanning Z-Position: -0.12953
17-03-17 17:26:36.748 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:36.748 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:36.758 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:26:36.758 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:36.958 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:36.958 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:36.958 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28296, sync = True, waitForSettling = True)
17-03-17 17:26:36.958 -07 000000431 INF: Z Motor: Moving to -0.129531 mm, started at -0.136037 mm, distance = 6.51 um
17-03-17 17:26:36.958 -07 000000431 INF: FPGA: Xmit ZDACW 28296\n [Z Motor]
17-03-17 17:26:36.958 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:26:36.968 -07 000000431 INF: FPGA: 'ZDACW 28296' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:36.968 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:36.968 -07 000000438 INF: FPGA: Recv ZDACR 28296
17-03-17 17:26:36.978 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:36.978 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:37.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.128 -07 000000632 INF: FPGA: Recv ZSGSRD 29453
17-03-17 17:26:37.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:37.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.138 -07 000000458 INF: FPGA: Recv ZSGSRD 29456
17-03-17 17:26:37.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.148 -07 000000632 INF: FPGA: Recv ZSGSRD 29451
17-03-17 17:26:37.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.158 -07 000000502 INF: FPGA: Recv ZSGSRD 29451
17-03-17 17:26:37.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.168 -07 000000480 INF: FPGA: Recv ZSGSRD 29454
17-03-17 17:26:37.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29452
17-03-17 17:26:37.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.188 -07 000000438 INF: FPGA: Recv ZSGSRD 29454
17-03-17 17:26:37.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.198 -07 000000480 INF: FPGA: Recv ZSGSRD 29450
17-03-17 17:26:37.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.208 -07 000000458 INF: FPGA: Recv ZSGSRD 29450
17-03-17 17:26:37.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:37.218 -07 000000438 INF: FPGA: Recv ZSGSRD 29452
17-03-17 17:26:37.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.228 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:37.228 -07 000000458 INF: FPGA: Recv ZPIEZORD 25638
17-03-17 17:26:37.238 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:37.238 -07 000000431 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -8.4 V.
17-03-17 17:26:37.238 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29452 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29452 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29450 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:26:37.238 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29452, posNoise = 4, negNoise = 2
17-03-17 17:26:37.238 -07 000000431 INF: Z Motor: After move to -0.129531, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:37.238 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:37.238 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:37.238 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:37.238 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:37.238 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:37.238 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:37.238 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:37.238 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:26:37.248 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:37.248 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:37.248 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:37.258 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:26:37.258 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:37.258 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:37.458 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:37.658 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:37.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:37.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:37.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:37.848 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:37.848 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:37.848 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:26:38.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:38.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:38.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:38.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:38.448 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:38.458 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:38.458 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:38.468 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:26:38.468 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:38.668 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:38.668 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:38.668 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29607, sync = True, waitForSettling = True)
17-03-17 17:26:38.668 -07 000000431 INF: Z Motor: Moving to -0.135532 mm, started at -0.129529 mm, distance = -6.00 um
17-03-17 17:26:38.668 -07 000000431 INF: FPGA: Xmit ZDACW 29607\n [Z Motor]
17-03-17 17:26:38.678 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:26:38.678 -07 000000431 INF: FPGA: 'ZDACW 29607' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 17:26:38.678 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:38.678 -07 000000632 INF: FPGA: Recv ZDACR 29607
17-03-17 17:26:38.688 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:38.688 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:38.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.838 -07 000000632 INF: FPGA: Recv ZSGSRD 30389
17-03-17 17:26:38.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:38.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.848 -07 000000632 INF: FPGA: Recv ZSGSRD 30387
17-03-17 17:26:38.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.858 -07 000000632 INF: FPGA: Recv ZSGSRD 30387
17-03-17 17:26:38.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.868 -07 000000632 INF: FPGA: Recv ZSGSRD 30394
17-03-17 17:26:38.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.878 -07 000000632 INF: FPGA: Recv ZSGSRD 30383
17-03-17 17:26:38.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.888 -07 000000632 INF: FPGA: Recv ZSGSRD 30392
17-03-17 17:26:38.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.898 -07 000000632 INF: FPGA: Recv ZSGSRD 30390
17-03-17 17:26:38.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.908 -07 000000632 INF: FPGA: Recv ZSGSRD 30383
17-03-17 17:26:38.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.918 -07 000000632 INF: FPGA: Recv ZSGSRD 30387
17-03-17 17:26:38.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:38.928 -07 000000632 INF: FPGA: Recv ZSGSRD 30386
17-03-17 17:26:38.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:38.938 -07 000000632 INF: FPGA: Recv ZPIEZORD 26862
17-03-17 17:26:38.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:38.948 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -7.8 V.
17-03-17 17:26:38.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30388 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30387 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30383 (-134.7 uncal um), Max = 30394 (-134.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:38.948 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30388, posNoise = 6, negNoise = 5
17-03-17 17:26:38.948 -07 000000431 INF: Z Motor: After move to -0.135532, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:38.948 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:38.948 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:38.948 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:38.948 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:38.958 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:38.958 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:38.958 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:38.958 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:38.958 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:38.958 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:38.958 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:38.968 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms.
17-03-17 17:26:38.968 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 11 ms.
17-03-17 17:26:38.968 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:39.168 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:39.368 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:39.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:39.368 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:39.368 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:39.558 -07 000000632 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:39.558 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:39.558 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:26:39.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:26:39.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:39.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:39.958 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms.
17-03-17 17:26:40.058 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:40.228 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:40.228 -07 000000431 INF: Scanning Z-Position: -0.12903
17-03-17 17:26:40.228 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:40.238 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:40.238 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:26:40.238 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:40.438 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:40.438 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:26:40.438 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28187, sync = True, waitForSettling = True)
17-03-17 17:26:40.438 -07 000000431 INF: Z Motor: Moving to -0.129032 mm, started at -0.135542 mm, distance = 6.51 um
17-03-17 17:26:40.438 -07 000000431 INF: FPGA: Xmit ZDACW 28187\n [Z Motor]
17-03-17 17:26:40.448 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:26:40.448 -07 000000431 INF: FPGA: 'ZDACW 28187' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:26:40.448 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:40.448 -07 000000433 INF: FPGA: Recv ZDACR 28187
17-03-17 17:26:40.458 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.458 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:40.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29372
17-03-17 17:26:40.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:40.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.618 -07 000000627 INF: FPGA: Recv ZSGSRD 29378
17-03-17 17:26:40.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.628 -07 000000429 INF: FPGA: Recv ZSGSRD 29377
17-03-17 17:26:40.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.638 -07 000000627 INF: FPGA: Recv ZSGSRD 29375
17-03-17 17:26:40.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.648 -07 000000429 INF: FPGA: Recv ZSGSRD 29370
17-03-17 17:26:40.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.658 -07 000000627 INF: FPGA: Recv ZSGSRD 29377
17-03-17 17:26:40.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.668 -07 000000433 INF: FPGA: Recv ZSGSRD 29382
17-03-17 17:26:40.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.678 -07 000000627 INF: FPGA: Recv ZSGSRD 29376
17-03-17 17:26:40.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.688 -07 000000429 INF: FPGA: Recv ZSGSRD 29379
17-03-17 17:26:40.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:40.698 -07 000000569 INF: FPGA: Recv ZSGSRD 29376
17-03-17 17:26:40.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.708 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:40.708 -07 000000632 INF: FPGA: Recv ZPIEZORD 25558
17-03-17 17:26:40.718 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:40.718 -07 000000431 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -8.4 V.
17-03-17 17:26:40.718 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29376 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29376 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29370 (-128.2 uncal um), Max = 29382 (-128.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:26:40.718 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29376, posNoise = 6, negNoise = 6
17-03-17 17:26:40.718 -07 000000431 INF: Z Motor: After move to -0.129032, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:40.718 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:26:40.718 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:40.718 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:40.718 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:40.718 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:40.718 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:40.718 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:40.718 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:40.718 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:40.728 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:40.728 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:40.738 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:40.738 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:26:40.738 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:40.938 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:41.138 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:41.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:41.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:41.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:41.338 -07 000000433 INF: FPGA: Recv @CAMSNAP 588
17-03-17 17:26:41.338 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:41.338 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 581 ms to get response, and 592 ms overall
17-03-17 17:26:41.498 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:41.528 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.05755,
17-03-17 17:26:41.728 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:26:41.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:41.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:41.728 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:26:41.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:41.938 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:41.948 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:41.948 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:41.958 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:41.958 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:42.158 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:42.158 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:42.158 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29497, sync = True, waitForSettling = True)
17-03-17 17:26:42.158 -07 000000431 INF: Z Motor: Moving to -0.135029 mm, started at -0.129041 mm, distance = -5.99 um
17-03-17 17:26:42.158 -07 000000431 INF: FPGA: Xmit ZDACW 29497\n [Z Motor]
17-03-17 17:26:42.158 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:26:42.168 -07 000000431 INF: FPGA: 'ZDACW 29497' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:42.168 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:42.168 -07 000000541 INF: FPGA: Recv ZDACR 29497
17-03-17 17:26:42.178 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.178 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:42.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.328 -07 000000429 INF: FPGA: Recv ZSGSRD 30311
17-03-17 17:26:42.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:42.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.338 -07 000000429 INF: FPGA: Recv ZSGSRD 30309
17-03-17 17:26:42.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.348 -07 000000429 INF: FPGA: Recv ZSGSRD 30311
17-03-17 17:26:42.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.358 -07 000000429 INF: FPGA: Recv ZSGSRD 30312
17-03-17 17:26:42.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.368 -07 000000429 INF: FPGA: Recv ZSGSRD 30311
17-03-17 17:26:42.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.378 -07 000000429 INF: FPGA: Recv ZSGSRD 30312
17-03-17 17:26:42.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.388 -07 000000429 INF: FPGA: Recv ZSGSRD 30307
17-03-17 17:26:42.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.398 -07 000000429 INF: FPGA: Recv ZSGSRD 30309
17-03-17 17:26:42.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.408 -07 000000429 INF: FPGA: Recv ZSGSRD 30306
17-03-17 17:26:42.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:42.418 -07 000000429 INF: FPGA: Recv ZSGSRD 30309
17-03-17 17:26:42.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.428 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:42.428 -07 000000429 INF: FPGA: Recv ZPIEZORD 26809
17-03-17 17:26:42.438 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:42.438 -07 000000431 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -7.7 V.
17-03-17 17:26:42.438 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30310 (-134.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30306 (-134.2 uncal um), Max = 30312 (-134.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:26:42.438 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 2, negNoise = 4
17-03-17 17:26:42.438 -07 000000431 INF: Z Motor: After move to -0.135029, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:42.438 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:26:42.438 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:42.438 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:42.438 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:42.448 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:42.448 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:42.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:42.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:42.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:42.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:42.448 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:42.468 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:42.468 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:26:42.468 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:42.668 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:42.868 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:42.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:42.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:42.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:43.058 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:43.058 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:43.058 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 589 ms to get response, and 592 ms overall
17-03-17 17:26:43.458 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:26:43.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:43.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:43.458 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:43.658 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:43.728 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:43.728 -07 000000431 INF: Scanning Z-Position: -0.12853
17-03-17 17:26:43.728 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:43.728 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:43.738 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:43.738 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:43.938 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:43.938 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:43.938 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28077, sync = True, waitForSettling = True)
17-03-17 17:26:43.938 -07 000000431 INF: Z Motor: Moving to -0.128528 mm, started at -0.135041 mm, distance = 6.51 um
17-03-17 17:26:43.938 -07 000000431 INF: FPGA: Xmit ZDACW 28077\n [Z Motor]
17-03-17 17:26:43.938 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:26:43.948 -07 000000431 INF: FPGA: 'ZDACW 28077' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:43.948 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:43.948 -07 000000429 INF: FPGA: Recv ZDACR 28077
17-03-17 17:26:43.958 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:43.958 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:44.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.108 -07 000000429 INF: FPGA: Recv ZSGSRD 29304
17-03-17 17:26:44.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:44.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.118 -07 000000429 INF: FPGA: Recv ZSGSRD 29300
17-03-17 17:26:44.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.128 -07 000000429 INF: FPGA: Recv ZSGSRD 29297
17-03-17 17:26:44.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.138 -07 000000429 INF: FPGA: Recv ZSGSRD 29295
17-03-17 17:26:44.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.148 -07 000000382 INF: FPGA: Recv ZSGSRD 29299
17-03-17 17:26:44.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.158 -07 000000429 INF: FPGA: Recv ZSGSRD 29297
17-03-17 17:26:44.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.168 -07 000000618 INF: FPGA: Recv ZSGSRD 29297
17-03-17 17:26:44.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.178 -07 000000561 INF: FPGA: Recv ZSGSRD 29297
17-03-17 17:26:44.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29302
17-03-17 17:26:44.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:44.198 -07 000000429 INF: FPGA: Recv ZSGSRD 29296
17-03-17 17:26:44.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.208 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:44.208 -07 000000618 INF: FPGA: Recv ZPIEZORD 25443
17-03-17 17:26:44.218 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:44.218 -07 000000431 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -8.5 V.
17-03-17 17:26:44.218 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29298 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29297 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29295 (-127.7 uncal um), Max = 29304 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:26:44.218 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29298, posNoise = 6, negNoise = 3
17-03-17 17:26:44.218 -07 000000431 INF: Z Motor: After move to -0.128528, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:44.218 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:44.218 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:44.218 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:44.218 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:44.218 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:44.218 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:44.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:44.228 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:44.228 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:44.228 -07 000000382 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:44.228 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:44.238 -07 000000382 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:44.238 -07 000000382 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:44.238 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:44.438 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:44.638 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:44.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:44.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:44.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:26:44.828 -07 000000429 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:44.828 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:44.828 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:26:45.228 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:45.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:45.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:45.228 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:45.538 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:45.548 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:45.548 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:45.558 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:26:45.558 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:45.758 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:45.758 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:45.758 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29388, sync = True, waitForSettling = True)
17-03-17 17:26:45.758 -07 000000431 INF: Z Motor: Moving to -0.134530 mm, started at -0.128540 mm, distance = -5.99 um
17-03-17 17:26:45.758 -07 000000431 INF: FPGA: Xmit ZDACW 29388\n [Z Motor]
17-03-17 17:26:45.758 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:26:45.768 -07 000000431 INF: FPGA: 'ZDACW 29388' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:45.768 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:45.768 -07 000000569 INF: FPGA: Recv ZDACR 29388
17-03-17 17:26:45.778 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:45.778 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:45.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.928 -07 000000438 INF: FPGA: Recv ZSGSRD 30236
17-03-17 17:26:45.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:45.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:26:45.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:45.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.948 -07 000000458 INF: FPGA: Recv ZSGSRD 30233
17-03-17 17:26:45.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:45.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.958 -07 000000458 INF: FPGA: Recv ZSGSRD 30233
17-03-17 17:26:45.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:45.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30230
17-03-17 17:26:45.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:45.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.978 -07 000000458 INF: FPGA: Recv ZSGSRD 30242
17-03-17 17:26:45.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:45.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.988 -07 000000438 INF: FPGA: Recv ZSGSRD 30232
17-03-17 17:26:45.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:45.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:45.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30233
17-03-17 17:26:46.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:46.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:46.008 -07 000000480 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:26:46.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:46.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:46.018 -07 000000438 INF: FPGA: Recv ZSGSRD 30229
17-03-17 17:26:46.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:46.028 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:46.028 -07 000000480 INF: FPGA: Recv ZPIEZORD 26722
17-03-17 17:26:46.038 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:46.038 -07 000000431 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -7.8 V.
17-03-17 17:26:46.038 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30233 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30232 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30229 (-133.7 uncal um), Max = 30242 (-133.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:26:46.038 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30233, posNoise = 9, negNoise = 4
17-03-17 17:26:46.038 -07 000000431 INF: Z Motor: After move to -0.134530, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:46.038 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:46.038 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:46.038 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:46.038 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:46.038 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:46.038 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:46.038 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:46.048 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:46.048 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:46.048 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:46.048 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:46.058 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:46.058 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:46.068 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:46.268 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:46.458 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:46.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:46.458 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:46.468 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:26:46.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:47.048 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:26:47.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:47.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:47.048 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:26:47.158 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:47.258 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:47.258 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:47.258 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 1180 ms to get response, and 1190 ms overall
17-03-17 17:26:47.258 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.028963,
17-03-17 17:26:47.258 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:47.328 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:47.328 -07 000000431 INF: Scanning Z-Position: -0.12803
17-03-17 17:26:47.328 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:47.338 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:47.338 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 17:26:47.338 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:47.538 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:47.538 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:26:47.538 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27968, sync = True, waitForSettling = True)
17-03-17 17:26:47.538 -07 000000431 INF: Z Motor: Moving to -0.128029 mm, started at -0.134547 mm, distance = 6.52 um
17-03-17 17:26:47.538 -07 000000431 INF: FPGA: Xmit ZDACW 27968\n [Z Motor]
17-03-17 17:26:47.548 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:26:47.548 -07 000000431 INF: FPGA: 'ZDACW 27968' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:26:47.548 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:47.548 -07 000000458 INF: FPGA: Recv ZDACR 27968
17-03-17 17:26:47.558 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.558 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:47.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.708 -07 000000382 INF: FPGA: Recv ZSGSRD 29228
17-03-17 17:26:47.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:47.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.718 -07 000000561 INF: FPGA: Recv ZSGSRD 29215
17-03-17 17:26:47.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.728 -07 000000458 INF: FPGA: Recv ZSGSRD 29220
17-03-17 17:26:47.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.738 -07 000000569 INF: FPGA: Recv ZSGSRD 29219
17-03-17 17:26:47.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.748 -07 000000480 INF: FPGA: Recv ZSGSRD 29220
17-03-17 17:26:47.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29218
17-03-17 17:26:47.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.768 -07 000000382 INF: FPGA: Recv ZSGSRD 29221
17-03-17 17:26:47.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.778 -07 000000429 INF: FPGA: Recv ZSGSRD 29222
17-03-17 17:26:47.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.788 -07 000000458 INF: FPGA: Recv ZSGSRD 29222
17-03-17 17:26:47.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:47.798 -07 000000561 INF: FPGA: Recv ZSGSRD 29214
17-03-17 17:26:47.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.808 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:47.808 -07 000000458 INF: FPGA: Recv ZPIEZORD 25392
17-03-17 17:26:47.818 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:47.818 -07 000000431 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -8.4 V.
17-03-17 17:26:47.818 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29220 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29220 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29214 (-127.2 uncal um), Max = 29228 (-127.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:26:47.818 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29220, posNoise = 8, negNoise = 6
17-03-17 17:26:47.818 -07 000000431 INF: Z Motor: After move to -0.128029, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:47.818 -07 000000431 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:26:47.818 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:47.818 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:47.818 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:47.818 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:47.818 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:47.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:47.828 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:47.828 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:47.828 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:47.828 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:47.838 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:26:47.838 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:26:47.838 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:48.038 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:48.238 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:48.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:48.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:48.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:48.428 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:48.428 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:48.428 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:26:48.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:48.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:48.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:48.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:49.138 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:49.148 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:49.148 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:49.158 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:49.158 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:49.358 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:49.358 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:49.358 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29279, sync = True, waitForSettling = True)
17-03-17 17:26:49.358 -07 000000431 INF: Z Motor: Moving to -0.134031 mm, started at -0.128039 mm, distance = -5.99 um
17-03-17 17:26:49.358 -07 000000431 INF: FPGA: Xmit ZDACW 29279\n [Z Motor]
17-03-17 17:26:49.358 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:26:49.368 -07 000000431 INF: FPGA: 'ZDACW 29279' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:49.368 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:49.368 -07 000000480 INF: FPGA: Recv ZDACR 29279
17-03-17 17:26:49.378 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.378 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:49.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.528 -07 000000569 INF: FPGA: Recv ZSGSRD 30154
17-03-17 17:26:49.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:49.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30153
17-03-17 17:26:49.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.548 -07 000000561 INF: FPGA: Recv ZSGSRD 30154
17-03-17 17:26:49.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.558 -07 000000458 INF: FPGA: Recv ZSGSRD 30155
17-03-17 17:26:49.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.568 -07 000000569 INF: FPGA: Recv ZSGSRD 30160
17-03-17 17:26:49.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.578 -07 000000561 INF: FPGA: Recv ZSGSRD 30155
17-03-17 17:26:49.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30153
17-03-17 17:26:49.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.598 -07 000000561 INF: FPGA: Recv ZSGSRD 30153
17-03-17 17:26:49.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.608 -07 000000502 INF: FPGA: Recv ZSGSRD 30156
17-03-17 17:26:49.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:49.618 -07 000000458 INF: FPGA: Recv ZSGSRD 30156
17-03-17 17:26:49.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:49.628 -07 000000618 INF: FPGA: Recv ZPIEZORD 26623
17-03-17 17:26:49.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:49.638 -07 000000431 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -7.8 V.
17-03-17 17:26:49.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30155 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30154 (-133.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30153 (-133.2 uncal um), Max = 30160 (-133.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:26:49.638 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30155, posNoise = 5, negNoise = 2
17-03-17 17:26:49.638 -07 000000431 INF: Z Motor: After move to -0.134031, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:49.638 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:49.638 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:49.638 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:49.638 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:49.638 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:49.638 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:49.638 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:49.648 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:26:49.648 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:49.648 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:49.648 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:49.658 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:49.658 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:49.658 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:49.858 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:50.058 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:50.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:50.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:50.068 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:26:50.248 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:50.248 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:50.248 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall
17-03-17 17:26:50.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:26:50.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:50.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:50.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:26:50.848 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:50.918 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:50.918 -07 000000431 INF: Scanning Z-Position: -0.12753
17-03-17 17:26:50.918 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:50.918 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:50.928 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:50.928 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:51.128 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:51.128 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:26:51.128 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27859, sync = True, waitForSettling = True)
17-03-17 17:26:51.128 -07 000000431 INF: Z Motor: Moving to -0.127530 mm, started at -0.134045 mm, distance = 6.52 um
17-03-17 17:26:51.128 -07 000000431 INF: FPGA: Xmit ZDACW 27859\n [Z Motor]
17-03-17 17:26:51.138 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:26:51.138 -07 000000431 INF: FPGA: 'ZDACW 27859' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 17:26:51.138 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:51.138 -07 000000561 INF: FPGA: Recv ZDACR 27859
17-03-17 17:26:51.148 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:51.148 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:51.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.298 -07 000000429 INF: FPGA: Recv ZSGSRD 29146
17-03-17 17:26:51.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:51.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.308 -07 000000618 INF: FPGA: Recv ZSGSRD 29146
17-03-17 17:26:51.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.318 -07 000000458 INF: FPGA: Recv ZSGSRD 29136
17-03-17 17:26:51.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.328 -07 000000618 INF: FPGA: Recv ZSGSRD 29143
17-03-17 17:26:51.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.338 -07 000000502 INF: FPGA: Recv ZSGSRD 29139
17-03-17 17:26:51.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.348 -07 000000480 INF: FPGA: Recv ZSGSRD 29146
17-03-17 17:26:51.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.358 -07 000000569 INF: FPGA: Recv ZSGSRD 29141
17-03-17 17:26:51.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29142
17-03-17 17:26:51.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.378 -07 000000569 INF: FPGA: Recv ZSGSRD 29139
17-03-17 17:26:51.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:51.388 -07 000000561 INF: FPGA: Recv ZSGSRD 29144
17-03-17 17:26:51.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.398 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:51.398 -07 000000569 INF: FPGA: Recv ZPIEZORD 25299
17-03-17 17:26:51.408 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:51.408 -07 000000431 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -8.5 V.
17-03-17 17:26:51.408 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29142 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29142 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29136 (-126.7 uncal um), Max = 29146 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:26:51.408 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29142, posNoise = 4, negNoise = 6
17-03-17 17:26:51.408 -07 000000431 INF: Z Motor: After move to -0.127530, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:51.408 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:26:51.408 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:51.408 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:51.408 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:51.408 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:51.408 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:51.408 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:51.418 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:51.418 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:51.418 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:51.418 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:51.428 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:51.428 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:26:51.428 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:51.498 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:51.628 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:51.828 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:51.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:51.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:51.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:52.018 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:52.018 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:52.018 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 591 ms overall
17-03-17 17:26:52.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 585 ms.
17-03-17 17:26:52.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:52.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:52.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:26:52.618 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:52.628 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:52.628 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:52.638 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:52.638 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:52.838 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:52.838 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 17:26:52.838 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29170, sync = True, waitForSettling = True)
17-03-17 17:26:52.838 -07 000000431 INF: Z Motor: Moving to -0.133532 mm, started at -0.127538 mm, distance = -5.99 um
17-03-17 17:26:52.838 -07 000000431 INF: FPGA: Xmit ZDACW 29170\n [Z Motor]
17-03-17 17:26:52.838 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:26:52.848 -07 000000431 INF: FPGA: 'ZDACW 29170' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:26:52.848 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:52.848 -07 000000429 INF: FPGA: Recv ZDACR 29170
17-03-17 17:26:52.858 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:52.858 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:52.888 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.009895,
17-03-17 17:26:53.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.008 -07 000000480 INF: FPGA: Recv ZSGSRD 30072
17-03-17 17:26:53.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:53.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.018 -07 000000569 INF: FPGA: Recv ZSGSRD 30078
17-03-17 17:26:53.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.028 -07 000000618 INF: FPGA: Recv ZSGSRD 30077
17-03-17 17:26:53.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.038 -07 000000502 INF: FPGA: Recv ZSGSRD 30084
17-03-17 17:26:53.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.048 -07 000000458 INF: FPGA: Recv ZSGSRD 30073
17-03-17 17:26:53.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.058 -07 000000561 INF: FPGA: Recv ZSGSRD 30074
17-03-17 17:26:53.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.068 -07 000000569 INF: FPGA: Recv ZSGSRD 30082
17-03-17 17:26:53.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.078 -07 000000561 INF: FPGA: Recv ZSGSRD 30076
17-03-17 17:26:53.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.088 -07 000000569 INF: FPGA: Recv ZSGSRD 30077
17-03-17 17:26:53.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:53.098 -07 000000480 INF: FPGA: Recv ZSGSRD 30078
17-03-17 17:26:53.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.108 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:53.108 -07 000000561 INF: FPGA: Recv ZPIEZORD 26527
17-03-17 17:26:53.118 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:53.118 -07 000000431 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.451 V. Piezo Error = -7.8 V.
17-03-17 17:26:53.118 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30077 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30077 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30072 (-132.7 uncal um), Max = 30084 (-132.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:26:53.118 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30077, posNoise = 7, negNoise = 5
17-03-17 17:26:53.118 -07 000000431 INF: Z Motor: After move to -0.133532, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:53.118 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:53.118 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:53.118 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:53.118 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:53.118 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:53.118 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:53.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:53.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:53.118 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:53.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:53.128 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:53.138 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:26:53.138 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:26:53.138 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:53.338 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 193
17-03-17 17:26:53.538 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 393
17-03-17 17:26:53.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 393
17-03-17 17:26:53.538 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:53.538 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:26:53.728 -07 000000618 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:53.728 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:53.728 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:26:54.128 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:26:54.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:54.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:54.128 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:26:54.448 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:54.508 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:54.508 -07 000000431 INF: Scanning Z-Position: -0.12703
17-03-17 17:26:54.518 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:54.518 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:54.528 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.528 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:54.728 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:54.728 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:54.728 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27750, sync = True, waitForSettling = True)
17-03-17 17:26:54.728 -07 000000431 INF: Z Motor: Moving to -0.127031 mm, started at -0.133544 mm, distance = 6.51 um
17-03-17 17:26:54.728 -07 000000431 INF: FPGA: Xmit ZDACW 27750\n [Z Motor]
17-03-17 17:26:54.728 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:26:54.738 -07 000000431 INF: FPGA: 'ZDACW 27750' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:54.738 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:54.738 -07 000000561 INF: FPGA: Recv ZDACR 27750
17-03-17 17:26:54.748 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.748 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:54.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.898 -07 000000632 INF: FPGA: Recv ZSGSRD 29067
17-03-17 17:26:54.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:54.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.908 -07 000000561 INF: FPGA: Recv ZSGSRD 29064
17-03-17 17:26:54.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29067
17-03-17 17:26:54.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.928 -07 000000458 INF: FPGA: Recv ZSGSRD 29063
17-03-17 17:26:54.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29067
17-03-17 17:26:54.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.948 -07 000000429 INF: FPGA: Recv ZSGSRD 29067
17-03-17 17:26:54.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.958 -07 000000618 INF: FPGA: Recv ZSGSRD 29060
17-03-17 17:26:54.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29065
17-03-17 17:26:54.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29065
17-03-17 17:26:54.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:54.988 -07 000000382 INF: FPGA: Recv ZSGSRD 29060
17-03-17 17:26:54.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:54.998 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:54.998 -07 000000632 INF: FPGA: Recv ZPIEZORD 25104
17-03-17 17:26:55.008 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:55.008 -07 000000431 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.234 V. Piezo Error = -8.7 V.
17-03-17 17:26:55.008 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29064 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29065 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29060 (-126.2 uncal um), Max = 29067 (-126.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:26:55.008 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29064, posNoise = 3, negNoise = 4
17-03-17 17:26:55.008 -07 000000431 INF: Z Motor: After move to -0.127031, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:55.008 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:26:55.008 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:55.008 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:55.008 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:55.008 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:55.008 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:55.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:55.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:55.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:55.018 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:26:55.018 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:55.028 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:26:55.028 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:55.028 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:55.228 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:55.428 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:55.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:55.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:55.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:55.618 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:55.618 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:55.618 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:26:56.018 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:26:56.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:56.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:56.018 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:26:56.118 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:56.128 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:56.128 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:56.138 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:26:56.138 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:56.338 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:56.338 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 17:26:56.338 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29060, sync = True, waitForSettling = True)
17-03-17 17:26:56.338 -07 000000431 INF: Z Motor: Moving to -0.133028 mm, started at -0.127037 mm, distance = -5.99 um
17-03-17 17:26:56.338 -07 000000431 INF: FPGA: Xmit ZDACW 29060\n [Z Motor]
17-03-17 17:26:56.348 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:26:56.348 -07 000000431 INF: FPGA: 'ZDACW 29060' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:26:56.348 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:56.348 -07 000000502 INF: FPGA: Recv ZDACR 29060
17-03-17 17:26:56.358 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.358 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:56.498 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:26:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:26:56.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.508 -07 000000382 INF: FPGA: Recv ZSGSRD 29996
17-03-17 17:26:56.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:56.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.518 -07 000000480 INF: FPGA: Recv ZSGSRD 29999
17-03-17 17:26:56.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.528 -07 000000618 INF: FPGA: Recv ZSGSRD 29997
17-03-17 17:26:56.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.538 -07 000000561 INF: FPGA: Recv ZSGSRD 30000
17-03-17 17:26:56.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.548 -07 000000632 INF: FPGA: Recv ZSGSRD 30003
17-03-17 17:26:56.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.558 -07 000000458 INF: FPGA: Recv ZSGSRD 30000
17-03-17 17:26:56.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.568 -07 000000502 INF: FPGA: Recv ZSGSRD 29997
17-03-17 17:26:56.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29995
17-03-17 17:26:56.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.588 -07 000000632 INF: FPGA: Recv ZSGSRD 29998
17-03-17 17:26:56.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:56.598 -07 000000480 INF: FPGA: Recv ZSGSRD 30004
17-03-17 17:26:56.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.608 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:56.608 -07 000000618 INF: FPGA: Recv ZPIEZORD 26352
17-03-17 17:26:56.618 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:56.618 -07 000000431 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -8.0 V.
17-03-17 17:26:56.618 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29999 (-132.3 uncal um), Error = 0.8 uncal um, Median = 29998 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29995 (-132.2 uncal um), Max = 30004 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:26:56.618 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29999, posNoise = 5, negNoise = 4
17-03-17 17:26:56.618 -07 000000431 INF: Z Motor: After move to -0.133028, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:56.618 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:26:56.618 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:56.618 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:56.618 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:56.618 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:56.628 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:56.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:56.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:56.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:56.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:26:56.628 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:56.638 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:26:56.638 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:26:56.638 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:56.838 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:26:57.038 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:57.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:57.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:57.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:26:57.228 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:57.228 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:57.228 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:26:57.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 588 ms.
17-03-17 17:26:57.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:57.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:57.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms.
17-03-17 17:26:57.728 -07 000000431 INF: MeasureProfile start
17-03-17 17:26:57.898 -07 000000431 INF: MeasureProfile done
17-03-17 17:26:57.898 -07 000000431 INF: Scanning Z-Position: -0.12653
17-03-17 17:26:57.898 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:57.908 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:57.908 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:26:57.908 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:26:58.108 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:26:58.108 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:26:58.108 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27640, sync = True, waitForSettling = True)
17-03-17 17:26:58.108 -07 000000431 INF: Z Motor: Moving to -0.126528 mm, started at -0.133043 mm, distance = 6.52 um
17-03-17 17:26:58.108 -07 000000431 INF: FPGA: Xmit ZDACW 27640\n [Z Motor]
17-03-17 17:26:58.118 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:26:58.118 -07 000000431 INF: FPGA: 'ZDACW 27640' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:26:58.118 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:58.118 -07 000000382 INF: FPGA: Recv ZDACR 27640
17-03-17 17:26:58.128 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:26:58.128 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:26:58.268 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.028963,
17-03-17 17:26:58.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.278 -07 000000429 INF: FPGA: Recv ZSGSRD 28987
17-03-17 17:26:58.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:58.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.288 -07 000000382 INF: FPGA: Recv ZSGSRD 28993
17-03-17 17:26:58.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:58.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.308 -07 000000618 INF: FPGA: Recv ZSGSRD 28982
17-03-17 17:26:58.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:26:58.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.318 -07 000000541 INF: FPGA: Recv ZSGSRD 28987
17-03-17 17:26:58.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:26:58.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.338 -07 000000502 INF: FPGA: Recv ZSGSRD 28983
17-03-17 17:26:58.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:26:58.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.348 -07 000000433 INF: FPGA: Recv ZSGSRD 28985
17-03-17 17:26:58.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:58.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.368 -07 000000561 INF: FPGA: Recv ZSGSRD 28986
17-03-17 17:26:58.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 17:26:58.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.378 -07 000000429 INF: FPGA: Recv ZSGSRD 28978
17-03-17 17:26:58.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:58.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.388 -07 000000429 INF: FPGA: Recv ZSGSRD 28982
17-03-17 17:26:58.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:58.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:26:58.398 -07 000000561 INF: FPGA: Recv ZSGSRD 28989
17-03-17 17:26:58.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:58.408 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:26:58.408 -07 000000429 INF: FPGA: Recv ZPIEZORD 25008
17-03-17 17:26:58.418 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:58.418 -07 000000431 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -8.8 V.
17-03-17 17:26:58.418 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28985 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28986 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 28978 (-125.7 uncal um), Max = 28993 (-125.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:26:58.418 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28985, posNoise = 8, negNoise = 7
17-03-17 17:26:58.418 -07 000000431 INF: Z Motor: After move to -0.126528, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:26:58.418 -07 000000431 INF: Z Motor: MoveAbsStepped took 303 ms)
17-03-17 17:26:58.418 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:26:58.418 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:26:58.418 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:26:58.418 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:26:58.418 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:26:58.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:26:58.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:26:58.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:26:58.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:26:58.428 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:26:58.438 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:26:58.438 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:26:58.438 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:26:58.638 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 196
17-03-17 17:26:58.838 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:26:58.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:26:58.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:26:58.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:26:59.028 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:26:59.028 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:26:59.028 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall
17-03-17 17:26:59.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 583 ms.
17-03-17 17:26:59.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:26:59.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:26:59.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms.
17-03-17 17:26:59.628 -07 000000431 INF: ComputeBrenner start
17-03-17 17:26:59.638 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:26:59.638 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:26:59.648 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:26:59.648 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:26:59.848 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:26:59.848 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:26:59.848 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28951, sync = True, waitForSettling = True)
17-03-17 17:26:59.848 -07 000000431 INF: Z Motor: Moving to -0.132529 mm, started at -0.126529 mm, distance = -6.00 um
17-03-17 17:26:59.848 -07 000000431 INF: FPGA: Xmit ZDACW 28951\n [Z Motor]
17-03-17 17:26:59.848 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:26:59.858 -07 000000431 INF: FPGA: 'ZDACW 28951' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:26:59.858 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:26:59.858 -07 000000433 INF: FPGA: Recv ZDACR 28951
17-03-17 17:26:59.868 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:26:59.868 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:00.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.018 -07 000000561 INF: FPGA: Recv ZSGSRD 29924
17-03-17 17:27:00.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:00.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29924
17-03-17 17:27:00.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.038 -07 000000561 INF: FPGA: Recv ZSGSRD 29916
17-03-17 17:27:00.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.048 -07 000000433 INF: FPGA: Recv ZSGSRD 29921
17-03-17 17:27:00.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.058 -07 000000561 INF: FPGA: Recv ZSGSRD 29923
17-03-17 17:27:00.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.068 -07 000000433 INF: FPGA: Recv ZSGSRD 29922
17-03-17 17:27:00.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.078 -07 000000561 INF: FPGA: Recv ZSGSRD 29919
17-03-17 17:27:00.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.088 -07 000000433 INF: FPGA: Recv ZSGSRD 29922
17-03-17 17:27:00.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.098 -07 000000433 INF: FPGA: Recv ZSGSRD 29922
17-03-17 17:27:00.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:00.108 -07 000000541 INF: FPGA: Recv ZSGSRD 29919
17-03-17 17:27:00.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.118 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:00.118 -07 000000433 INF: FPGA: Recv ZPIEZORD 26272
17-03-17 17:27:00.128 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:00.128 -07 000000431 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -8.1 V.
17-03-17 17:27:00.128 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29921 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29922 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29916 (-131.7 uncal um), Max = 29924 (-131.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:27:00.128 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29921, posNoise = 3, negNoise = 5
17-03-17 17:27:00.128 -07 000000431 INF: Z Motor: After move to -0.132529, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:00.128 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:27:00.128 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:00.128 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:00.128 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:00.128 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:00.128 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:00.128 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:00.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:00.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:00.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:00.138 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:00.148 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:27:00.148 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:27:00.148 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:00.348 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:00.548 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:00.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:00.548 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:00.548 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:27:00.738 -07 000000382 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:00.738 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:00.738 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:27:01.138 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:27:01.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:01.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:01.138 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms.
17-03-17 17:27:01.338 -07 000000431 INF: MeasureProfile start
17-03-17 17:27:01.398 -07 000000431 INF: MeasureProfile done
17-03-17 17:27:01.408 -07 000000431 INF: Scanning Z-Position: -0.12603
17-03-17 17:27:01.408 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:01.408 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:01.418 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:01.418 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:01.498 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:01.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:01.618 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:01.618 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:01.618 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27531, sync = True, waitForSettling = True)
17-03-17 17:27:01.618 -07 000000431 INF: Z Motor: Moving to -0.126029 mm, started at -0.132542 mm, distance = 6.51 um
17-03-17 17:27:01.618 -07 000000431 INF: FPGA: Xmit ZDACW 27531\n [Z Motor]
17-03-17 17:27:01.618 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:27:01.628 -07 000000431 INF: FPGA: 'ZDACW 27531' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:27:01.628 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:01.628 -07 000000458 INF: FPGA: Recv ZDACR 27531
17-03-17 17:27:01.638 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.638 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:01.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.788 -07 000000458 INF: FPGA: Recv ZSGSRD 28916
17-03-17 17:27:01.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:01.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.798 -07 000000458 INF: FPGA: Recv ZSGSRD 28912
17-03-17 17:27:01.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.808 -07 000000458 INF: FPGA: Recv ZSGSRD 28911
17-03-17 17:27:01.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.818 -07 000000458 INF: FPGA: Recv ZSGSRD 28908
17-03-17 17:27:01.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.828 -07 000000458 INF: FPGA: Recv ZSGSRD 28907
17-03-17 17:27:01.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.838 -07 000000561 INF: FPGA: Recv ZSGSRD 28906
17-03-17 17:27:01.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.848 -07 000000458 INF: FPGA: Recv ZSGSRD 28908
17-03-17 17:27:01.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.858 -07 000000458 INF: FPGA: Recv ZSGSRD 28908
17-03-17 17:27:01.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.868 -07 000000458 INF: FPGA: Recv ZSGSRD 28906
17-03-17 17:27:01.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:01.878 -07 000000458 INF: FPGA: Recv ZSGSRD 28910
17-03-17 17:27:01.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.888 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:01.888 -07 000000458 INF: FPGA: Recv ZPIEZORD 24960
17-03-17 17:27:01.898 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:01.898 -07 000000431 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.0 V, since DAC is at 4.201 V. Piezo Error = -8.7 V.
17-03-17 17:27:01.898 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.0 um, Read 10 ADC samples: Avg = 28909 (-125.3 uncal um), Error = 0.8 uncal um, Median = 28908 (-125.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28906 (-125.3 uncal um), Max = 28916 (-125.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:27:01.898 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28909, posNoise = 7, negNoise = 3
17-03-17 17:27:01.898 -07 000000431 INF: Z Motor: After move to -0.126029, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:01.898 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:27:01.898 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:01.898 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:01.898 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:01.898 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:01.898 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:01.898 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:01.898 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:01.898 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:01.908 -07 000000632 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:01.908 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:01.918 -07 000000632 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:27:01.918 -07 000000632 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms.
17-03-17 17:27:01.918 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:02.118 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:02.318 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:02.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:02.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:02.318 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:27:02.508 -07 000000502 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:02.618 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:02.618 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 693 ms to get response, and 698 ms overall
17-03-17 17:27:02.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 582 ms.
17-03-17 17:27:02.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:02.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:02.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 586 ms.
17-03-17 17:27:03.018 -07 000000431 INF: ComputeBrenner start
17-03-17 17:27:03.028 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:03.028 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:03.038 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:03.038 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:03.238 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:03.238 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 17:27:03.238 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28842, sync = True, waitForSettling = True)
17-03-17 17:27:03.238 -07 000000431 INF: Z Motor: Moving to -0.132030 mm, started at -0.126041 mm, distance = -5.99 um
17-03-17 17:27:03.238 -07 000000431 INF: FPGA: Xmit ZDACW 28842\n [Z Motor]
17-03-17 17:27:03.248 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:27:03.248 -07 000000431 INF: FPGA: 'ZDACW 28842' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:27:03.248 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:03.248 -07 000000502 INF: FPGA: Recv ZDACR 28842
17-03-17 17:27:03.258 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:03.258 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:03.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.408 -07 000000541 INF: FPGA: Recv ZSGSRD 29844
17-03-17 17:27:03.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:03.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.418 -07 000000632 INF: FPGA: Recv ZSGSRD 29845
17-03-17 17:27:03.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.428 -07 000000433 INF: FPGA: Recv ZSGSRD 29843
17-03-17 17:27:03.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.438 -07 000000480 INF: FPGA: Recv ZSGSRD 29840
17-03-17 17:27:03.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.448 -07 000000502 INF: FPGA: Recv ZSGSRD 29845
17-03-17 17:27:03.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29847
17-03-17 17:27:03.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:03.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.468 -07 000000632 INF: FPGA: Recv ZSGSRD 29841
17-03-17 17:27:03.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29844
17-03-17 17:27:03.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.488 -07 000000433 INF: FPGA: Recv ZSGSRD 29843
17-03-17 17:27:03.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:03.498 -07 000000561 INF: FPGA: Recv ZSGSRD 29843
17-03-17 17:27:03.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.508 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:03.508 -07 000000618 INF: FPGA: Recv ZPIEZORD 26264
17-03-17 17:27:03.518 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:03.518 -07 000000431 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -7.9 V.
17-03-17 17:27:03.518 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29844 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29844 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29840 (-131.2 uncal um), Max = 29847 (-131.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:27:03.518 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29844, posNoise = 3, negNoise = 4
17-03-17 17:27:03.518 -07 000000431 INF: Z Motor: After move to -0.132030, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:03.518 -07 000000431 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 17:27:03.518 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:03.518 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:03.518 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:03.518 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:03.518 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:03.518 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:03.528 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:03.528 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:03.528 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:03.528 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:03.538 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:27:03.538 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:27:03.538 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:03.688 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.06299,
17-03-17 17:27:03.738 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:27:03.938 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 395
17-03-17 17:27:03.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395
17-03-17 17:27:03.938 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:03.948 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:27:04.128 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:04.128 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:04.128 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:27:04.528 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:27:04.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:04.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:04.538 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:27:04.728 -07 000000431 INF: MeasureProfile start
17-03-17 17:27:04.798 -07 000000431 INF: MeasureProfile done
17-03-17 17:27:04.798 -07 000000431 INF: Scanning Z-Position: -0.12553
17-03-17 17:27:04.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:04.798 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:04.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:04.808 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:05.008 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:05.008 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:05.008 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27422, sync = True, waitForSettling = True)
17-03-17 17:27:05.008 -07 000000431 INF: Z Motor: Moving to -0.125530 mm, started at -0.132048 mm, distance = 6.52 um
17-03-17 17:27:05.008 -07 000000431 INF: FPGA: Xmit ZDACW 27422\n [Z Motor]
17-03-17 17:27:05.008 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:27:05.018 -07 000000431 INF: FPGA: 'ZDACW 27422' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:05.018 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:05.018 -07 000000541 INF: FPGA: Recv ZDACR 27422
17-03-17 17:27:05.028 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.028 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:05.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.178 -07 000000618 INF: FPGA: Recv ZSGSRD 28835
17-03-17 17:27:05.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:05.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.188 -07 000000561 INF: FPGA: Recv ZSGSRD 28829
17-03-17 17:27:05.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.198 -07 000000541 INF: FPGA: Recv ZSGSRD 28831
17-03-17 17:27:05.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.208 -07 000000632 INF: FPGA: Recv ZSGSRD 28832
17-03-17 17:27:05.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.218 -07 000000433 INF: FPGA: Recv ZSGSRD 28829
17-03-17 17:27:05.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.228 -07 000000632 INF: FPGA: Recv ZSGSRD 28834
17-03-17 17:27:05.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.238 -07 000000433 INF: FPGA: Recv ZSGSRD 28826
17-03-17 17:27:05.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.248 -07 000000541 INF: FPGA: Recv ZSGSRD 28835
17-03-17 17:27:05.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.258 -07 000000618 INF: FPGA: Recv ZSGSRD 28829
17-03-17 17:27:05.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:05.268 -07 000000502 INF: FPGA: Recv ZSGSRD 28831
17-03-17 17:27:05.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:05.278 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:05.278 -07 000000541 INF: FPGA: Recv ZPIEZORD 25000
17-03-17 17:27:05.288 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:05.288 -07 000000431 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 41.8 V, since DAC is at 4.184 V. Piezo Error = -8.4 V.
17-03-17 17:27:05.288 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -125.5 um, Read 10 ADC samples: Avg = 28831 (-124.8 uncal um), Error = 0.8 uncal um, Median = 28831 (-124.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 28826 (-124.7 uncal um), Max = 28835 (-124.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:27:05.288 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28831, posNoise = 4, negNoise = 5
17-03-17 17:27:05.288 -07 000000431 INF: Z Motor: After move to -0.125530, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:05.288 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:27:05.288 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:05.288 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:05.288 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:05.288 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:05.288 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:05.288 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:05.288 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:05.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:05.298 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:05.298 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:05.308 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:27:05.308 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:27:05.308 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:05.508 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:05.708 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:05.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:05.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:05.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start.
17-03-17 17:27:05.898 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:05.898 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:05.898 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:27:06.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:27:06.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:06.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:06.298 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:27:06.498 -07 000000431 INF: ComputeBrenner start
17-03-17 17:27:06.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:06.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:06.508 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:06.508 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:06.518 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:06.518 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:06.718 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:06.718 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:06.718 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28733, sync = True, waitForSettling = True)
17-03-17 17:27:06.718 -07 000000431 INF: Z Motor: Moving to -0.131531 mm, started at -0.125540 mm, distance = -5.99 um
17-03-17 17:27:06.718 -07 000000431 INF: FPGA: Xmit ZDACW 28733\n [Z Motor]
17-03-17 17:27:06.718 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:27:06.728 -07 000000431 INF: FPGA: 'ZDACW 28733' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:27:06.728 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:06.728 -07 000000618 INF: FPGA: Recv ZDACR 28733
17-03-17 17:27:06.738 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.738 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:06.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29758
17-03-17 17:27:06.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:06.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.898 -07 000000502 INF: FPGA: Recv ZSGSRD 29764
17-03-17 17:27:06.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.908 -07 000000541 INF: FPGA: Recv ZSGSRD 29766
17-03-17 17:27:06.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.918 -07 000000502 INF: FPGA: Recv ZSGSRD 29761
17-03-17 17:27:06.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.928 -07 000000632 INF: FPGA: Recv ZSGSRD 29767
17-03-17 17:27:06.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29764
17-03-17 17:27:06.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.948 -07 000000541 INF: FPGA: Recv ZSGSRD 29767
17-03-17 17:27:06.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.958 -07 000000433 INF: FPGA: Recv ZSGSRD 29764
17-03-17 17:27:06.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.968 -07 000000632 INF: FPGA: Recv ZSGSRD 29759
17-03-17 17:27:06.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:06.978 -07 000000502 INF: FPGA: Recv ZSGSRD 29771
17-03-17 17:27:06.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.988 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:06.988 -07 000000632 INF: FPGA: Recv ZPIEZORD 26134
17-03-17 17:27:06.998 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:06.998 -07 000000431 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -8.0 V.
17-03-17 17:27:06.998 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29764 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29758 (-130.7 uncal um), Max = 29771 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:27:06.998 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29764, posNoise = 7, negNoise = 6
17-03-17 17:27:06.998 -07 000000431 INF: Z Motor: After move to -0.131531, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:06.998 -07 000000431 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:27:06.998 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:06.998 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:06.998 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:06.998 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:06.998 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:06.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:06.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:06.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:07.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:07.008 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:07.018 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:27:07.018 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:27:07.018 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:07.218 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:07.418 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:07.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:07.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:07.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) start.
17-03-17 17:27:07.608 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:07.608 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:07.608 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 591 ms overall
17-03-17 17:27:08.008 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1389170736, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:27:08.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:08.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:08.008 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:27:08.208 -07 000000431 INF: MeasureProfile start
17-03-17 17:27:08.278 -07 000000431 INF: MeasureProfile done
17-03-17 17:27:08.278 -07 000000431 INF: Scanning Z-Position: -0.12503
17-03-17 17:27:08.278 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:08.278 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:08.288 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:08.288 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:08.488 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:08.488 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:08.488 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27313, sync = True, waitForSettling = True)
17-03-17 17:27:08.488 -07 000000431 INF: Z Motor: Moving to -0.125031 mm, started at -0.131534 mm, distance = 6.50 um
17-03-17 17:27:08.488 -07 000000431 INF: FPGA: Xmit ZDACW 27313\n [Z Motor]
17-03-17 17:27:08.488 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:27:08.498 -07 000000431 INF: FPGA: 'ZDACW 27313' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:08.498 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:08.498 -07 000000618 INF: FPGA: Recv ZDACR 27313
17-03-17 17:27:08.508 -07 000000431 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:08.508 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:08.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.668 -07 000000561 INF: FPGA: Recv ZSGSRD 28755
17-03-17 17:27:08.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:27:08.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.678 -07 000000569 INF: FPGA: Recv ZSGSRD 28759
17-03-17 17:27:08.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:08.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.708 -07 000000502 INF: FPGA: Recv ZSGSRD 28756
17-03-17 17:27:08.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:08.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.738 -07 000000541 INF: FPGA: Recv ZSGSRD 28755
17-03-17 17:27:08.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:08.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.758 -07 000000433 INF: FPGA: Recv ZSGSRD 28756
17-03-17 17:27:08.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:27:08.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.768 -07 000000480 INF: FPGA: Recv ZSGSRD 28750
17-03-17 17:27:08.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:08.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.778 -07 000000429 INF: FPGA: Recv ZSGSRD 28751
17-03-17 17:27:08.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:08.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.788 -07 000000480 INF: FPGA: Recv ZSGSRD 28758
17-03-17 17:27:08.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:08.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.798 -07 000000429 INF: FPGA: Recv ZSGSRD 28753
17-03-17 17:27:08.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:08.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:08.808 -07 000000541 INF: FPGA: Recv ZSGSRD 28752
17-03-17 17:27:08.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:08.818 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:08.818 -07 000000429 INF: FPGA: Recv ZPIEZORD 24800
17-03-17 17:27:08.828 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:08.828 -07 000000431 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 41.7 V, since DAC is at 4.168 V. Piezo Error = -8.7 V.
17-03-17 17:27:08.828 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -125.0 um, Read 10 ADC samples: Avg = 28754 (-124.3 uncal um), Error = 0.8 uncal um, Median = 28755 (-124.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 28750 (-124.3 uncal um), Max = 28759 (-124.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:27:08.828 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28754, posNoise = 5, negNoise = 4
17-03-17 17:27:08.828 -07 000000431 INF: Z Motor: After move to -0.125031, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:08.828 -07 000000431 INF: Z Motor: MoveAbsStepped took 335 ms)
17-03-17 17:27:08.828 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:08.828 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:08.828 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:08.828 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:08.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:08.828 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:08.838 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:08.838 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:08.838 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:08.838 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:08.848 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:27:08.848 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms.
17-03-17 17:27:08.848 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:09.048 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:09.068 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.174325,
17-03-17 17:27:09.248 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:09.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:09.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:09.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) start.
17-03-17 17:27:09.438 -07 000000632 INF: FPGA: Recv @CAMSNAP 587
17-03-17 17:27:09.438 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:09.438 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 589 ms to get response, and 592 ms overall
17-03-17 17:27:09.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1440773224, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:27:09.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:09.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:09.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:27:10.158 -07 000000431 INF: ComputeBrenner start
17-03-17 17:27:10.168 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:10.168 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:10.178 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:10.178 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:10.378 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:10.378 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:10.378 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28624, sync = True, waitForSettling = True)
17-03-17 17:27:10.378 -07 000000431 INF: Z Motor: Moving to -0.131032 mm, started at -0.125045 mm, distance = -5.99 um
17-03-17 17:27:10.378 -07 000000431 INF: FPGA: Xmit ZDACW 28624\n [Z Motor]
17-03-17 17:27:10.378 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:27:10.388 -07 000000431 INF: FPGA: 'ZDACW 28624' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:10.388 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:10.388 -07 000000433 INF: FPGA: Recv ZDACR 28624
17-03-17 17:27:10.398 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.398 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:10.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.548 -07 000000541 INF: FPGA: Recv ZSGSRD 29688
17-03-17 17:27:10.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:10.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.558 -07 000000632 INF: FPGA: Recv ZSGSRD 29685
17-03-17 17:27:10.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29693
17-03-17 17:27:10.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.578 -07 000000480 INF: FPGA: Recv ZSGSRD 29690
17-03-17 17:27:10.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.588 -07 000000569 INF: FPGA: Recv ZSGSRD 29689
17-03-17 17:27:10.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.598 -07 000000480 INF: FPGA: Recv ZSGSRD 29691
17-03-17 17:27:10.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.608 -07 000000433 INF: FPGA: Recv ZSGSRD 29678
17-03-17 17:27:10.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.618 -07 000000480 INF: FPGA: Recv ZSGSRD 29692
17-03-17 17:27:10.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29683
17-03-17 17:27:10.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:10.638 -07 000000632 INF: FPGA: Recv ZSGSRD 29688
17-03-17 17:27:10.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.648 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:10.648 -07 000000569 INF: FPGA: Recv ZPIEZORD 26051
17-03-17 17:27:10.658 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:10.658 -07 000000431 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -8.0 V.
17-03-17 17:27:10.658 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29688 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29678 (-130.2 uncal um), Max = 29693 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:27:10.658 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29688, posNoise = 5, negNoise = 10
17-03-17 17:27:10.658 -07 000000431 INF: Z Motor: After move to -0.131032, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:10.658 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:27:10.658 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:10.658 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:10.658 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:10.658 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:10.658 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:10.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:10.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:10.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:10.668 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:10.668 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:10.678 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:27:10.678 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:27:10.678 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:10.878 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:11.078 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:11.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:11.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:11.088 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:27:11.268 -07 000000480 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:11.268 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:11.268 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:27:11.498 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:11.668 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 580 ms.
17-03-17 17:27:11.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:11.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:11.668 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms.
17-03-17 17:27:11.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:11.768 -07 000000431 INF: MeasureProfile start
17-03-17 17:27:11.838 -07 000000431 INF: MeasureProfile done
17-03-17 17:27:11.838 -07 000000431 INF: Scanning Z-Position: -0.12453
17-03-17 17:27:11.838 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:11.838 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:11.848 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:11.848 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:12.048 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:12.048 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:12.048 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27204, sync = True, waitForSettling = True)
17-03-17 17:27:12.048 -07 000000431 INF: Z Motor: Moving to -0.124532 mm, started at -0.131045 mm, distance = 6.51 um
17-03-17 17:27:12.048 -07 000000431 INF: FPGA: Xmit ZDACW 27204\n [Z Motor]
17-03-17 17:27:12.048 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:27:12.058 -07 000000431 INF: FPGA: 'ZDACW 27204' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:12.058 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:12.058 -07 000000429 INF: FPGA: Recv ZDACR 27204
17-03-17 17:27:12.068 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.068 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:12.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.218 -07 000000458 INF: FPGA: Recv ZSGSRD 28681
17-03-17 17:27:12.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:12.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.228 -07 000000632 INF: FPGA: Recv ZSGSRD 28676
17-03-17 17:27:12.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.238 -07 000000458 INF: FPGA: Recv ZSGSRD 28674
17-03-17 17:27:12.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.248 -07 000000569 INF: FPGA: Recv ZSGSRD 28675
17-03-17 17:27:12.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.258 -07 000000458 INF: FPGA: Recv ZSGSRD 28670
17-03-17 17:27:12.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.268 -07 000000569 INF: FPGA: Recv ZSGSRD 28676
17-03-17 17:27:12.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.278 -07 000000480 INF: FPGA: Recv ZSGSRD 28674
17-03-17 17:27:12.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.288 -07 000000541 INF: FPGA: Recv ZSGSRD 28672
17-03-17 17:27:12.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.298 -07 000000433 INF: FPGA: Recv ZSGSRD 28673
17-03-17 17:27:12.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:12.308 -07 000000541 INF: FPGA: Recv ZSGSRD 28676
17-03-17 17:27:12.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.318 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:12.318 -07 000000569 INF: FPGA: Recv ZPIEZORD 24727
17-03-17 17:27:12.328 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:12.328 -07 000000431 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 41.5 V, since DAC is at 4.151 V. Piezo Error = -8.7 V.
17-03-17 17:27:12.328 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -124.5 um, Read 10 ADC samples: Avg = 28675 (-123.8 uncal um), Error = 0.8 uncal um, Median = 28674 (-123.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28670 (-123.7 uncal um), Max = 28681 (-123.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:27:12.328 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28675, posNoise = 6, negNoise = 5
17-03-17 17:27:12.328 -07 000000431 INF: Z Motor: After move to -0.124532, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:12.328 -07 000000431 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:27:12.328 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:12.328 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:12.328 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:12.328 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:12.328 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:12.328 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:12.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:27:12.338 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:12.338 -07 000000458 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:12.338 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:12.348 -07 000000458 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:27:12.348 -07 000000458 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:27:12.348 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:12.548 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:12.748 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:12.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:12.748 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:12.748 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:27:12.938 -07 000000458 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:12.948 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:12.948 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 590 ms overall
17-03-17 17:27:13.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:27:13.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:13.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:13.338 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:27:13.648 -07 000000431 INF: ComputeBrenner start
17-03-17 17:27:13.668 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:13.668 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:13.678 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:13.678 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:13.878 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:13.878 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:13.878 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28514, sync = True, waitForSettling = True)
17-03-17 17:27:13.878 -07 000000431 INF: Z Motor: Moving to -0.130529 mm, started at -0.124538 mm, distance = -5.99 um
17-03-17 17:27:13.878 -07 000000431 INF: FPGA: Xmit ZDACW 28514\n [Z Motor]
17-03-17 17:27:13.888 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:27:13.888 -07 000000431 INF: FPGA: 'ZDACW 28514' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:13.888 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:13.888 -07 000000429 INF: FPGA: Recv ZDACR 28514
17-03-17 17:27:13.898 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:13.898 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:14.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.048 -07 000000433 INF: FPGA: Recv ZSGSRD 29611
17-03-17 17:27:14.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.058 -07 000000541 INF: FPGA: Recv ZSGSRD 29614
17-03-17 17:27:14.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.088 -07 000000429 INF: FPGA: Recv ZSGSRD 29609
17-03-17 17:27:14.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:14.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.098 -07 000000569 INF: FPGA: Recv ZSGSRD 29612
17-03-17 17:27:14.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.128 -07 000000569 INF: FPGA: Recv ZSGSRD 29608
17-03-17 17:27:14.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:14.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.158 -07 000000458 INF: FPGA: Recv ZSGSRD 29605
17-03-17 17:27:14.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:14.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.168 -07 000000429 INF: FPGA: Recv ZSGSRD 29616
17-03-17 17:27:14.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.178 -07 000000632 INF: FPGA: Recv ZSGSRD 29612
17-03-17 17:27:14.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.188 -07 000000429 INF: FPGA: Recv ZSGSRD 29607
17-03-17 17:27:14.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:14.198 -07 000000632 INF: FPGA: Recv ZSGSRD 29605
17-03-17 17:27:14.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.208 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:14.208 -07 000000569 INF: FPGA: Recv ZPIEZORD 25941
17-03-17 17:27:14.218 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:14.218 -07 000000431 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -8.1 V.
17-03-17 17:27:14.218 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29610 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29610 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29605 (-129.7 uncal um), Max = 29616 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:27:14.218 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29610, posNoise = 6, negNoise = 5
17-03-17 17:27:14.218 -07 000000431 INF: Z Motor: After move to -0.130529, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:14.218 -07 000000431 INF: Z Motor: MoveAbsStepped took 337 ms)
17-03-17 17:27:14.218 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:14.218 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:14.218 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:14.218 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:14.228 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:14.228 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:14.228 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:27:14.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:14.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:14.228 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:14.238 -07 000000569 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:27:14.238 -07 000000569 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms.
17-03-17 17:27:14.248 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:14.448 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 195
17-03-17 17:27:14.458 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.275821,
17-03-17 17:27:14.648 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 396
17-03-17 17:27:14.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 396
17-03-17 17:27:14.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:14.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) start.
17-03-17 17:27:14.828 -07 000000569 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:14.828 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:14.828 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall
17-03-17 17:27:15.228 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 574918816, 0x0, 314322768) end. Duration was 581 ms.
17-03-17 17:27:15.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:15.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:15.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:27:15.428 -07 000000431 INF: MeasureProfile start
17-03-17 17:27:15.498 -07 000000431 INF: MeasureProfile done
17-03-17 17:27:15.498 -07 000000431 INF: Scanning Z-Position: -0.12403
17-03-17 17:27:15.498 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:15.498 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:15.508 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:15.508 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:15.708 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:15.708 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:15.708 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 27094, sync = True, waitForSettling = True)
17-03-17 17:27:15.708 -07 000000431 INF: Z Motor: Moving to -0.124028 mm, started at -0.130544 mm, distance = 6.52 um
17-03-17 17:27:15.708 -07 000000431 INF: FPGA: Xmit ZDACW 27094\n [Z Motor]
17-03-17 17:27:15.708 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:27:15.718 -07 000000431 INF: FPGA: 'ZDACW 27094' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:15.718 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:15.718 -07 000000429 INF: FPGA: Recv ZDACR 27094
17-03-17 17:27:15.728 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.728 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:15.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.878 -07 000000429 INF: FPGA: Recv ZSGSRD 28596
17-03-17 17:27:15.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:15.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.888 -07 000000433 INF: FPGA: Recv ZSGSRD 28601
17-03-17 17:27:15.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.898 -07 000000541 INF: FPGA: Recv ZSGSRD 28600
17-03-17 17:27:15.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.908 -07 000000480 INF: FPGA: Recv ZSGSRD 28599
17-03-17 17:27:15.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.918 -07 000000433 INF: FPGA: Recv ZSGSRD 28603
17-03-17 17:27:15.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.928 -07 000000429 INF: FPGA: Recv ZSGSRD 28592
17-03-17 17:27:15.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.938 -07 000000429 INF: FPGA: Recv ZSGSRD 28597
17-03-17 17:27:15.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.948 -07 000000429 INF: FPGA: Recv ZSGSRD 28596
17-03-17 17:27:15.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.958 -07 000000569 INF: FPGA: Recv ZSGSRD 28594
17-03-17 17:27:15.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:15.968 -07 000000433 INF: FPGA: Recv ZSGSRD 28598
17-03-17 17:27:15.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.978 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:15.978 -07 000000569 INF: FPGA: Recv ZPIEZORD 24646
17-03-17 17:27:15.988 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:15.988 -07 000000431 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 41.3 V, since DAC is at 4.134 V. Piezo Error = -8.7 V.
17-03-17 17:27:15.988 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -124.0 um, Read 10 ADC samples: Avg = 28598 (-123.3 uncal um), Error = 0.7 uncal um, Median = 28598 (-123.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28592 (-123.2 uncal um), Max = 28603 (-123.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:27:15.988 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28598, posNoise = 5, negNoise = 6
17-03-17 17:27:15.988 -07 000000431 INF: Z Motor: After move to -0.124028, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:15.988 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:27:15.988 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:15.988 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:15.988 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:15.988 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:15.988 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:15.988 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:15.998 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:15.998 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:15.998 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:15.998 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:16.008 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:27:16.008 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms.
17-03-17 17:27:16.008 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:16.208 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:16.408 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:16.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:16.408 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:16.408 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) start.
17-03-17 17:27:16.498 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:16.598 -07 000000433 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:16.598 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:16.598 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 589 ms overall
17-03-17 17:27:16.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1201852016, 0x0, 314322768) end. Duration was 586 ms.
17-03-17 17:27:16.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:16.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:16.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:27:17.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:17.198 -07 000000431 INF: ComputeBrenner start
17-03-17 17:27:17.208 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:17.208 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:17.218 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:17.218 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:17.418 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:17.418 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:17.418 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 28405, sync = True, waitForSettling = True)
17-03-17 17:27:17.418 -07 000000431 INF: Z Motor: Moving to -0.130030 mm, started at -0.124043 mm, distance = -5.99 um
17-03-17 17:27:17.418 -07 000000431 INF: FPGA: Xmit ZDACW 28405\n [Z Motor]
17-03-17 17:27:17.418 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:27:17.428 -07 000000431 INF: FPGA: 'ZDACW 28405' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:17.428 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:17.428 -07 000000569 INF: FPGA: Recv ZDACR 28405
17-03-17 17:27:17.438 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.438 -07 000000431 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:17.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.588 -07 000000433 INF: FPGA: Recv ZSGSRD 29530
17-03-17 17:27:17.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.598 -07 000000569 INF: FPGA: Recv ZSGSRD 29532
17-03-17 17:27:17.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29530
17-03-17 17:27:17.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.618 -07 000000429 INF: FPGA: Recv ZSGSRD 29530
17-03-17 17:27:17.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.628 -07 000000541 INF: FPGA: Recv ZSGSRD 29537
17-03-17 17:27:17.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.638 -07 000000569 INF: FPGA: Recv ZSGSRD 29528
17-03-17 17:27:17.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.648 -07 000000480 INF: FPGA: Recv ZSGSRD 29533
17-03-17 17:27:17.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.658 -07 000000480 INF: FPGA: Recv ZSGSRD 29526
17-03-17 17:27:17.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.668 -07 000000429 INF: FPGA: Recv ZSGSRD 29530
17-03-17 17:27:17.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:17.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29531
17-03-17 17:27:17.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.688 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:17.688 -07 000000433 INF: FPGA: Recv ZPIEZORD 25857
17-03-17 17:27:17.698 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:17.698 -07 000000431 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -8.1 V.
17-03-17 17:27:17.698 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29530 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29526 (-129.2 uncal um), Max = 29537 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:27:17.698 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 6, negNoise = 5
17-03-17 17:27:17.698 -07 000000431 INF: Z Motor: After move to -0.130030, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:17.698 -07 000000431 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:27:17.698 -07 000000431 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:17.698 -07 000000431 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:17.698 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:17.698 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered start.
17-03-17 17:27:17.698 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:17.698 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:17.698 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:27:17.698 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start.
17-03-17 17:27:17.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:17.708 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start.
17-03-17 17:27:17.718 -07 000000429 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:27:17.718 -07 000000429 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms.
17-03-17 17:27:17.718 -07 000000431 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:17.918 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192
17-03-17 17:27:18.118 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392
17-03-17 17:27:18.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392
17-03-17 17:27:18.118 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start.
17-03-17 17:27:18.118 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) start.
17-03-17 17:27:18.308 -07 000000561 INF: FPGA: Recv @CAMSNAP 585
17-03-17 17:27:18.308 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:18.308 -07 000000431 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall
17-03-17 17:27:18.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1253454504, 0x0, 314322768) end. Duration was 587 ms.
17-03-17 17:27:18.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:18.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:18.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms.
17-03-17 17:27:19.018 -07 000000431 INF: MeasureProfile start
17-03-17 17:27:19.088 -07 000000431 INF: MeasureProfile done
17-03-17 17:27:19.088 -07 000000431 INF: Through-focus: Z pos. [um] vs. Focus metric
17-03-17 17:27:19.088 -07 000000431 INF:   -144.03  2.156167
17-03-17 17:27:19.088 -07 000000431 INF:   -143.53  2.14728
17-03-17 17:27:19.088 -07 000000431 INF:   -143.03  2.155924
17-03-17 17:27:19.088 -07 000000431 INF:   -142.53  2.15917
17-03-17 17:27:19.088 -07 000000431 INF:   -142.03  2.16428
17-03-17 17:27:19.088 -07 000000431 INF:   -141.53  2.175993
17-03-17 17:27:19.088 -07 000000431 INF:   -141.03  2.178587
17-03-17 17:27:19.088 -07 000000431 INF:   -140.53  2.191544
17-03-17 17:27:19.088 -07 000000431 INF:   -140.03  2.202521
17-03-17 17:27:19.088 -07 000000431 INF:   -139.53  2.223399
17-03-17 17:27:19.088 -07 000000431 INF:   -139.03  2.240413
17-03-17 17:27:19.088 -07 000000431 INF:   -138.53  2.278615
17-03-17 17:27:19.088 -07 000000431 INF:   -138.03  2.317823
17-03-17 17:27:19.088 -07 000000431 INF:   -137.53  2.391819
17-03-17 17:27:19.088 -07 000000431 INF:   -137.03  2.50497
17-03-17 17:27:19.088 -07 000000431 INF:   -136.53  2.664554
17-03-17 17:27:19.088 -07 000000431 INF:   -136.03  2.900239
17-03-17 17:27:19.088 -07 000000431 INF:   -135.53  3.495719
17-03-17 17:27:19.088 -07 000000431 INF:   -135.03  4.574277
17-03-17 17:27:19.088 -07 000000431 INF:   -134.53  6.310861
17-03-17 17:27:19.088 -07 000000431 INF:   -134.03  8.385162
17-03-17 17:27:19.088 -07 000000431 INF:   -133.53  9.373001
17-03-17 17:27:19.088 -07 000000431 INF:   -133.03  8.588944
17-03-17 17:27:19.088 -07 000000431 INF:   -132.53  6.741089
17-03-17 17:27:19.088 -07 000000431 INF:   -132.03  4.837186
17-03-17 17:27:19.088 -07 000000431 INF:   -131.53  3.528222
17-03-17 17:27:19.088 -07 000000431 INF:   -131.03  2.855326
17-03-17 17:27:19.088 -07 000000431 INF:   -130.53  2.520134
17-03-17 17:27:19.088 -07 000000431 INF:   -130.03  2.354769
17-03-17 17:27:19.088 -07 000000431 INF:   -129.53  2.26199
17-03-17 17:27:19.088 -07 000000431 INF:   -129.03  2.208424
17-03-17 17:27:19.088 -07 000000431 INF:   -128.53  2.184644
17-03-17 17:27:19.088 -07 000000431 INF:   -128.03  2.173728
17-03-17 17:27:19.088 -07 000000431 INF:   -127.53  2.162895
17-03-17 17:27:19.088 -07 000000431 INF:   -127.03  2.157026
17-03-17 17:27:19.088 -07 000000431 INF:   -126.53  2.154176
17-03-17 17:27:19.088 -07 000000431 INF:   -126.03  2.150837
17-03-17 17:27:19.088 -07 000000431 INF:   -125.53  2.149415
17-03-17 17:27:19.088 -07 000000431 INF:   -125.03  2.139762
17-03-17 17:27:19.088 -07 000000431 INF:   -124.53  2.141893
17-03-17 17:27:19.088 -07 000000431 INF:   -124.03  2.14385
17-03-17 17:27:19.088 -07 000000431 INF: Best-focus Z [um]: -133.5025
17-03-17 17:27:19.088 -07 000000431 INF: ===================  ===================
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with deviant X-shift: Z=6.472498 um, X=0
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with deviant X-shift: Z=9.472497 um, X=0
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with outlier X-shift: Z=6.472498 um, X=0
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with outlier X-shift: Z=6.972492 um, X=0
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with outlier X-shift: Z=7.4725 um, X=0
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with outlier X-shift: Z=7.972494 um, X=0
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with outlier X-shift: Z=8.472502 um, X=2576
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with outlier X-shift: Z=8.972496 um, X=2576
17-03-17 17:27:19.088 -07 000000431 INF: Discarding point with outlier X-shift: Z=9.472497 um, X=0
17-03-17 17:27:19.088 -07 000000431 INF: Z [um] vs. Xshift [pixels]:
17-03-17 17:27:19.088 -07 000000431 INF:   -10.52751  -1920 **
17-03-17 17:27:19.088 -07 000000431 INF:   -10.0275  -1888 **
17-03-17 17:27:19.088 -07 000000431 INF:   -9.527504  -1808 **
17-03-17 17:27:19.088 -07 000000431 INF:   -9.027496  -1712 **
17-03-17 17:27:19.088 -07 000000431 INF:   -8.527502  -1648 **
17-03-17 17:27:19.088 -07 000000431 INF:   -8.027509  -1568 **
17-03-17 17:27:19.088 -07 000000431 INF:   -7.5275  -1488 **
17-03-17 17:27:19.088 -07 000000431 INF:   -7.027507  -1392 **
17-03-17 17:27:19.088 -07 000000431 INF:   -6.527498  -1296 **
17-03-17 17:27:19.088 -07 000000431 INF:   -6.027505  -1200 **
17-03-17 17:27:19.088 -07 000000431 INF:   -5.527496  -1120 **
17-03-17 17:27:19.088 -07 000000431 INF:   -5.027503  -1008 **
17-03-17 17:27:19.088 -07 000000431 INF:   -4.527494  -921 **
17-03-17 17:27:19.088 -07 000000431 INF:   -4.027501  -823 **
17-03-17 17:27:19.088 -07 000000431 INF:   -3.527507  -720 **
17-03-17 17:27:19.088 -07 000000431 INF:   -3.027499  -624 **
17-03-17 17:27:19.088 -07 000000431 INF:   -2.527505  -520 **
17-03-17 17:27:19.088 -07 000000431 INF:   -2.027497  -414 **
17-03-17 17:27:19.088 -07 000000431 INF:   -1.527503  -309 **
17-03-17 17:27:19.088 -07 000000431 INF:   -1.027495  -207 **
17-03-17 17:27:19.088 -07 000000431 INF:   -0.5275011  -112 **
17-03-17 17:27:19.088 -07 000000431 INF:   -0.02750754  0 **
17-03-17 17:27:19.088 -07 000000431 INF:   0.4725009  104 **
17-03-17 17:27:19.088 -07 000000431 INF:   0.9724945  208 **
17-03-17 17:27:19.088 -07 000000431 INF:   1.472503  304 **
17-03-17 17:27:19.088 -07 000000431 INF:   1.972497  416 **
17-03-17 17:27:19.088 -07 000000431 INF:   2.472505  512 **
17-03-17 17:27:19.088 -07 000000431 INF:   2.972498  624 **
17-03-17 17:27:19.088 -07 000000431 INF:   3.472492  720 **
17-03-17 17:27:19.088 -07 000000431 INF:   3.972501  816 **
17-03-17 17:27:19.088 -07 000000431 INF:   4.472494  909 **
17-03-17 17:27:19.088 -07 000000431 INF:   4.972503  1009 **
17-03-17 17:27:19.088 -07 000000431 INF:   5.472496  1111 **
17-03-17 17:27:19.088 -07 000000431 INF:   5.972505  1218 **
17-03-17 17:27:19.088 -07 000000431 INF:   6.472498  0
17-03-17 17:27:19.088 -07 000000431 INF:   6.972492  0
17-03-17 17:27:19.088 -07 000000431 INF:   7.4725  0
17-03-17 17:27:19.088 -07 000000431 INF:   7.972494  0
17-03-17 17:27:19.088 -07 000000431 INF:   8.472502  2576
17-03-17 17:27:19.088 -07 000000431 INF:   8.972496  2576
17-03-17 17:27:19.088 -07 000000431 INF:   9.472497  0
17-03-17 17:27:19.088 -07 000000431 INF: X=-1920  Z correction [um]=-10.40028
17-03-17 17:27:19.088 -07 000000431 INF: X=-1888  Z correction [um]=-10.15828
17-03-17 17:27:19.088 -07 000000431 INF: X=-1808  Z correction [um]=-9.553293
17-03-17 17:27:19.088 -07 000000431 INF: X=-1712  Z correction [um]=-8.954189
17-03-17 17:27:19.088 -07 000000431 INF: X=-1648  Z correction [um]=-8.549133
17-03-17 17:27:19.088 -07 000000431 INF: X=-1568  Z correction [um]=-8.042814
17-03-17 17:27:19.088 -07 000000431 INF: X=-1488  Z correction [um]=-7.566576
17-03-17 17:27:19.088 -07 000000431 INF: X=-1392  Z correction [um]=-7.027804
17-03-17 17:27:19.088 -07 000000431 INF: X=-1296  Z correction [um]=-6.489032
17-03-17 17:27:19.088 -07 000000431 INF: X=-1200  Z correction [um]=-6.004738
17-03-17 17:27:19.098 -07 000000431 INF: X=-1120  Z correction [um]=-5.584171
17-03-17 17:27:19.098 -07 000000431 INF: X=-1008  Z correction [um]=-4.995378
17-03-17 17:27:19.098 -07 000000431 INF: X=-921  Z correction [um]=-4.530894
17-03-17 17:27:19.098 -07 000000431 INF: X=-823  Z correction [um]=-4.029587
17-03-17 17:27:19.098 -07 000000431 INF: X=-720  Z correction [um]=-3.514132
17-03-17 17:27:19.098 -07 000000431 INF: X=-624  Z correction [um]=-3.041926
17-03-17 17:27:19.098 -07 000000431 INF: X=-520  Z correction [um]=-2.53037
17-03-17 17:27:19.098 -07 000000431 INF: X=-414  Z correction [um]=-2.032613
17-03-17 17:27:19.098 -07 000000431 INF: X=-309  Z correction [um]=-1.518055
17-03-17 17:27:19.098 -07 000000431 INF: X=-207  Z correction [um]=-1.011041
17-03-17 17:27:19.098 -07 000000431 INF: X=-112  Z correction [um]=-0.5485987
17-03-17 17:27:19.098 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:27:19.098 -07 000000431 INF: X=104  Z correction [um]=0.4763321
17-03-17 17:27:19.098 -07 000000431 INF: X=208  Z correction [um]=0.9766126
17-03-17 17:27:19.098 -07 000000431 INF: X=304  Z correction [um]=1.451503
17-03-17 17:27:19.098 -07 000000431 INF: X=416  Z correction [um]=1.991746
17-03-17 17:27:19.098 -07 000000431 INF: X=512  Z correction [um]=2.447731
17-03-17 17:27:19.098 -07 000000431 INF: X=624  Z correction [um]=3.000379
17-03-17 17:27:19.098 -07 000000431 INF: X=720  Z correction [um]=3.474078
17-03-17 17:27:19.098 -07 000000431 INF: X=816  Z correction [um]=3.98696
17-03-17 17:27:19.098 -07 000000431 INF: X=909  Z correction [um]=4.453423
17-03-17 17:27:19.098 -07 000000431 INF: X=1009  Z correction [um]=4.965602
17-03-17 17:27:19.098 -07 000000431 INF: X=1111  Z correction [um]=5.46289
17-03-17 17:27:19.098 -07 000000431 INF: X=1218  Z correction [um]=5.984553
17-03-17 17:27:19.098 -07 000000431 INF: Focus model: 
17-03-17 17:27:19.098 -07 000000431 INF:   0.005722495 8.413461E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.005722495 8.413461E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.002516512 6.711313E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.00124559 5.946678E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.0003231925 5.27774E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.0002843284 5.236423E-06
17-03-17 17:27:19.098 -07 000000431 INF:   7.640698E-05 4.99433E-06
17-03-17 17:27:19.098 -07 000000431 INF:   -2.15792E-05 4.843299E-06
17-03-17 17:27:19.098 -07 000000431 INF:   1.400664E-05 4.957795E-06
17-03-17 17:27:19.098 -07 000000431 INF:   -2.08126E-05 4.777843E-06
17-03-17 17:27:19.098 -07 000000431 INF:   -2.708402E-05 4.842934E-06
17-03-17 17:27:19.098 -07 000000431 INF:   -2.6567E-06 4.804262E-06
17-03-17 17:27:19.098 -07 000000431 INF:   -0.0001546638 5.064454E-06
17-03-17 17:27:19.098 -07 000000431 INF:   -5.70698E-05 4.966985E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.0001497943 4.783739E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.0001497943 4.783739E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.0001497943 4.783739E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.0001497943 4.783739E-06
17-03-17 17:27:19.098 -07 000000431 INF:   0.0001497943 4.783739E-06
17-03-17 17:27:19.098 -07 000000431 INF: Gain [nm/pix]: 5.429983 
Trusted operating range for this model  [um]: -5.972505 -- 10 
Median deviation from model  [nm]: 15.8792827278376 
Median deviation from model over trusted range  [nm]: 15.8792827278376
17-03-17 17:27:19.108 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:27:19.108 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 17:27:19.118 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:19.118 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 17:27:19.618 -07 000000382 INF: FPGA: Recv EMOUT
17-03-17 17:27:19.618 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:27:19.618 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 17:27:19.618 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 17:27:19.628 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:19.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:19.628 -07 000000610 INF: Skipping coarse focus in cycle 1, tile 1: adopting Best-Z from focus model: -0.172880
17-03-17 17:27:19.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 59.908203125, Z-Position -0.130036760769478. ------
17-03-17 17:27:19.628 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:19.628 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17888 mm
17-03-17 17:27:19.628 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:19.628 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:27:19.628 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 59.9082 mm, delta = 0.0044 mm
17-03-17 17:27:19.628 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 39076, sync = True, waitForSettling = False)
17-03-17 17:27:19.628 -07 000000561 INF: Z Motor: Moving to -0.178878 mm, started at -0.130037 mm, distance = -48.84 um
17-03-17 17:27:19.628 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:19.638 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:27:19.638 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:19.638 -07 000000502 INF: FPGA: Recv YRDPOS 122692
17-03-17 17:27:19.648 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:19.648 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:27:19.648 -07 000000382 INF: Y Motor: Encoder = 122692 = motor step 95853.1 = 59.9082 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:19.648 -07 000000382 INF: Y Motor: Last commanded position = 59.9105 mm (95856.8 steps), delta from last commanded position = 0.0021 mm (3.4 steps). UsingTableMove = False
17-03-17 17:27:19.648 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:27:19.658 -07 000000561 INF: FPGA: Xmit ZDACW 39076\n [Z Motor]
17-03-17 17:27:19.658 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:27:19.668 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:27:19.668 -07 000000561 INF: FPGA: 'ZDACW 39076' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:27:19.678 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:19.678 -07 000000569 INF: FPGA: Recv ZDACR 39076
17-03-17 17:27:19.688 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:27:19.688 -07 000000561 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:27:19.698 -07 000000561 INF: FPGA: Recv YMVTO 122701 12
17-03-17 17:27:19.698 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 27 ms to get response, and 57 ms overall
17-03-17 17:27:19.698 -07 000000382 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-17 17:27:19.698 -07 000000382 INF: Y Motor: To move from 59.908 to 59.913 (0.004 mm) should take 7 steps, but required 12 steps (0.008 mm). Slippage = 0.003 mm (0.71%).
17-03-17 17:27:19.698 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 57 ms, distance = 0.004 mm, average velocity = 0.077 mm/sec
17-03-17 17:27:19.818 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.350101,
17-03-17 17:27:19.848 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:19.848 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 214 ms overall
17-03-17 17:27:21.498 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:21.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:22.548 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:22.548 -07 000000618 INF: FPGA: Recv YRDPOS 122707
17-03-17 17:27:22.558 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:22.558 -07 000000382 INF: Y Motor: Encoder = 122707 = motor step 95864.8 = 59.9155 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:22.568 -07 000000382 INF: Y Motor: After move to 59.912609, error = 0.002918, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:22.568 -07 000000382 INF: Y Motor: Position error after settling = 6 encoder counts (0.003 mm), Delta during settling = 6 counts (0.003 mm)
17-03-17 17:27:22.568 -07 000000382 INF: Y Motor: Moved to 59.9155 after 2933 ms
17-03-17 17:27:22.568 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178878 mm (DAC = 39076)
17-03-17 17:27:22.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.568 -07 000000541 INF: FPGA: Recv ZSGSRD 37142
17-03-17 17:27:22.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:27:22.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.578 -07 000000431 INF: FPGA: Recv ZSGSRD 37136
17-03-17 17:27:22.588 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.588 -07 000000561 INF: FPGA: Recv ZSGSRD 37135
17-03-17 17:27:22.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.598 -07 000000502 INF: FPGA: Recv ZSGSRD 37133
17-03-17 17:27:22.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.608 -07 000000431 INF: FPGA: Recv ZSGSRD 37143
17-03-17 17:27:22.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.618 -07 000000569 INF: FPGA: Recv ZSGSRD 37138
17-03-17 17:27:22.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.628 -07 000000618 INF: FPGA: Recv ZSGSRD 37135
17-03-17 17:27:22.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.638 -07 000000569 INF: FPGA: Recv ZSGSRD 37132
17-03-17 17:27:22.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.648 -07 000000431 INF: FPGA: Recv ZSGSRD 37135
17-03-17 17:27:22.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:22.658 -07 000000480 INF: FPGA: Recv ZSGSRD 37138
17-03-17 17:27:22.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.668 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:22.668 -07 000000618 INF: FPGA: Recv ZPIEZORD 33455
17-03-17 17:27:22.678 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:22.678 -07 000000429 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.963 V. Piezo Error = -8.2 V.
17-03-17 17:27:22.678 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37137 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37136 (-178.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37132 (-178.0 uncal um), Max = 37143 (-178.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:27:22.678 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37137, posNoise = 6, negNoise = 5
17-03-17 17:27:22.678 -07 000000429 INF: Z Motor: After move to -0.178878, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:22.678 -07 000000429 INF: Z Motor: Settle wait time = 2936 ms, measure time = 105 ms (allowed 150 ms), total time = 3041 ms
17-03-17 17:27:22.678 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:22.728 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3093 ms
17-03-17 17:27:22.728 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:22.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:22.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:22.728 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:22.728 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:22.728 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:22.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:22.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:22.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:22.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:22.738 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:22.748 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:27:22.748 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:27:22.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:22.798 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:22.998 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:22.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:22.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:22.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 599543520, 0x0, 559484976) start.
17-03-17 17:27:23.038 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:23.038 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:23.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 17:27:23.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 599543520, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:27:23.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:23.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:27:23.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:27:23.238 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:23.238 -07 000000561 INF: Image SNR check: start
17-03-17 17:27:23.238 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:23.248 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:23.248 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:23.248 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=77.41]
17-03-17 17:27:23.248 -07 000000561 INF: Autofocus start
17-03-17 17:27:23.248 -07 000000561 INF: MeasureProfile start
17-03-17 17:27:23.268 -07 000000561 INF: MeasureProfile done
17-03-17 17:27:23.268 -07 000000561 INF: X=-320  Z correction [um]=-1.764106
17-03-17 17:27:23.268 -07 000000561 INF: Autofocus finished
17-03-17 17:27:23.448 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:23.448 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:23.448 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91552734375, Z-position -0.178899318319712. ----------
17-03-17 17:27:23.448 -07 000000610 INF: Cycle	1	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:23.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37203, sync = True, waitForSettling = True)
17-03-17 17:27:23.458 -07 000000610 INF: Z Motor: Moving to -0.170304 mm, started at -0.178899 mm, distance = 8.59 um
17-03-17 17:27:23.458 -07 000000610 INF: FPGA: Xmit ZDACW 37203\n [Z Motor]
17-03-17 17:27:23.458 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:27:23.468 -07 000000610 INF: FPGA: 'ZDACW 37203' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:23.468 -07 000000431 INF: FPGA: Recv ZDACR 37203
17-03-17 17:27:23.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:23.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.628 -07 000000561 INF: FPGA: Recv ZSGSRD 35804
17-03-17 17:27:23.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:23.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.638 -07 000000502 INF: FPGA: Recv ZSGSRD 35799
17-03-17 17:27:23.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.648 -07 000000561 INF: FPGA: Recv ZSGSRD 35802
17-03-17 17:27:23.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.658 -07 000000502 INF: FPGA: Recv ZSGSRD 35802
17-03-17 17:27:23.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.668 -07 000000561 INF: FPGA: Recv ZSGSRD 35804
17-03-17 17:27:23.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.678 -07 000000431 INF: FPGA: Recv ZSGSRD 35801
17-03-17 17:27:23.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.688 -07 000000541 INF: FPGA: Recv ZSGSRD 35800
17-03-17 17:27:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.698 -07 000000569 INF: FPGA: Recv ZSGSRD 35802
17-03-17 17:27:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.708 -07 000000541 INF: FPGA: Recv ZSGSRD 35798
17-03-17 17:27:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:23.718 -07 000000561 INF: FPGA: Recv ZSGSRD 35797
17-03-17 17:27:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:23.728 -07 000000502 INF: FPGA: Recv ZPIEZORD 31705
17-03-17 17:27:23.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:23.738 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.0 V.
17-03-17 17:27:23.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35801 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35802 (-169.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35797 (-169.4 uncal um), Max = 35804 (-169.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:27:23.738 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35801, posNoise = 3, negNoise = 4
17-03-17 17:27:23.738 -07 000000610 INF: Z Motor: After move to -0.170304, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:23.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:27:23.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:23.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:23.738 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:23.738 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:23.738 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:23.738 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:23.738 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:23.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:23.738 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:27:23.738 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:27:23.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:23.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:23.748 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 17:27:23.748 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:23.758 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:27:23.758 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:27:23.758 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 17:27:23.768 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:23.768 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:27:23.768 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:23.778 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 17:27:23.778 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms.
17-03-17 17:27:23.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37380 150\n [Camera]
17-03-17 17:27:23.978 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:24.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:24.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:24.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:24.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:24.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:27:24.378 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:24.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:24.378 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:24.488 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:24.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1201852016, 0x0, 418435064) start.
17-03-17 17:27:24.568 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37380 775
17-03-17 17:27:24.718 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:24.768 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:27:24.768 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:27:24.768 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:24.768 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:27:24.778 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:27:24.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1201852016, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:27:24.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:27:24.878 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:24.888 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:24.888 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 17:27:24.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:24.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:24.908 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:24.908 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:24.908 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:24.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1237274280, 0x0, 391868352) start.
17-03-17 17:27:24.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:24.908 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:24.908 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:24.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1272696544, 0x0, 418435064) start.
17-03-17 17:27:25.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:27:25.098 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:25.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37380 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 17:27:25.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:25.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91552734375, Z-Position -0.170316570898319. ------
17-03-17 17:27:25.098 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:25.108 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17712 mm
17-03-17 17:27:25.108 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:25.108 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:25.108 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:27:25.108 -07 000000433 INF: Y Motor: Moving to 60.7426 mm, started at 59.9155 mm, delta = 0.8271 mm
17-03-17 17:27:25.108 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38691, sync = True, waitForSettling = False)
17-03-17 17:27:25.108 -07 000000569 INF: Z Motor: Moving to -0.177116 mm, started at -0.170317 mm, distance = -6.80 um
17-03-17 17:27:25.118 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:27:25.118 -07 000000569 INF: FPGA: Xmit ZDACW 38691\n [Z Motor]
17-03-17 17:27:25.118 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:27:25.128 -07 000000569 INF: FPGA: 'ZDACW 38691' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:27:25.128 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:25.128 -07 000000458 INF: FPGA: Recv YRDPOS 122707
17-03-17 17:27:25.138 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:25.138 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:27:25.138 -07 000000433 INF: Y Motor: Encoder = 122707 = motor step 95864.8 = 59.9155 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:25.138 -07 000000433 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:25.138 -07 000000433 INF: Y Motor: Moving 1323 steps0
17-03-17 17:27:25.148 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:25.148 -07 000000382 INF: FPGA: Recv ZDACR 38691
17-03-17 17:27:25.158 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:25.158 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:27:25.158 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:25.178 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.383812,
17-03-17 17:27:25.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1237274280, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:27:25.308 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:27:25.308 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:25.308 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1272696544, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:27:25.308 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:27:25.308 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:25.308 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:25.308 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:27:25.308 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:25.318 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 17:27:25.338 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:25.338 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:27:25.528 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 17:27:25.528 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:27:25.558 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:25.558 -07 000000541 INF: FPGA: Recv YRDPOS 124392
17-03-17 17:27:25.568 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:25.568 -07 000000433 INF: Y Motor: Encoder = 124392 = motor step 97181.3 = 60.7383 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:25.568 -07 000000433 INF: Y Motor: Position error before settling (table move) = -9 encoder counts (-0.004 mm)
17-03-17 17:27:25.568 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.827 mm, average velocity = 2.083 mm/sec
17-03-17 17:27:26.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:26.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:26.518 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:26.518 -07 000000502 INF: FPGA: Recv YRDPOS 124392
17-03-17 17:27:26.528 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.528 -07 000000433 INF: Y Motor: Encoder = 124392 = motor step 97181.3 = 60.7383 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:26.528 -07 000000433 INF: Y Motor: After move to 60.742607, error = -0.004326, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:26.528 -07 000000433 INF: Y Motor: Position error after settling (table move) = -9 encoder counts (-0.004 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:26.528 -07 000000433 INF: Y Motor: Moved to 60.7383 after 1425 ms (table move)
17-03-17 17:27:26.538 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177116 mm (DAC = 38691)
17-03-17 17:27:26.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.538 -07 000000429 INF: FPGA: Recv ZSGSRD 36865
17-03-17 17:27:26.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:26.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.548 -07 000000429 INF: FPGA: Recv ZSGSRD 36860
17-03-17 17:27:26.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.558 -07 000000632 INF: FPGA: Recv ZSGSRD 36865
17-03-17 17:27:26.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.568 -07 000000632 INF: FPGA: Recv ZSGSRD 36866
17-03-17 17:27:26.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.578 -07 000000632 INF: FPGA: Recv ZSGSRD 36864
17-03-17 17:27:26.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.588 -07 000000632 INF: FPGA: Recv ZSGSRD 36866
17-03-17 17:27:26.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.598 -07 000000632 INF: FPGA: Recv ZSGSRD 36856
17-03-17 17:27:26.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.608 -07 000000632 INF: FPGA: Recv ZSGSRD 36856
17-03-17 17:27:26.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.618 -07 000000502 INF: FPGA: Recv ZSGSRD 36857
17-03-17 17:27:26.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:26.628 -07 000000541 INF: FPGA: Recv ZSGSRD 36865
17-03-17 17:27:26.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.638 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:26.638 -07 000000541 INF: FPGA: Recv ZPIEZORD 33122
17-03-17 17:27:26.648 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:26.648 -07 000000431 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.3 V.
17-03-17 17:27:26.648 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36862 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36864 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36856 (-176.2 uncal um), Max = 36866 (-176.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:27:26.648 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36862, posNoise = 4, negNoise = 6
17-03-17 17:27:26.648 -07 000000431 INF: Z Motor: After move to -0.177116, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:26.648 -07 000000431 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:27:26.648 -07 000000431 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:26.698 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:27:26.698 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:26.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:26.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:26.698 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:26.698 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:26.698 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:26.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:26.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:26.698 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:26.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:26.708 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:26.718 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:27:26.718 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:27:26.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:26.768 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:26.968 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:26.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:26.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:26.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177227312, 0x0, 559484976) start.
17-03-17 17:27:27.008 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:27.008 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:27.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:27:27.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177227312, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:27:27.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:27.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:27:27.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:27:27.108 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:27.108 -07 000000458 INF: Autofocus start
17-03-17 17:27:27.108 -07 000000458 INF: MeasureProfile start
17-03-17 17:27:27.108 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:27.118 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:27:27.118 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:27.118 -07 000000458 INF: MeasureProfile done
17-03-17 17:27:27.118 -07 000000458 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 17:27:27.118 -07 000000458 INF: Autofocus finished
17-03-17 17:27:27.318 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:27.318 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:27.318 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73828125, Z-position -0.177132659980727. ----------
17-03-17 17:27:27.318 -07 000000610 INF: Cycle	1	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:27.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37115, sync = True, waitForSettling = True)
17-03-17 17:27:27.328 -07 000000610 INF: Z Motor: Moving to -0.169902 mm, started at -0.177133 mm, distance = 7.23 um
17-03-17 17:27:27.328 -07 000000610 INF: FPGA: Xmit ZDACW 37115\n [Z Motor]
17-03-17 17:27:27.328 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:27:27.338 -07 000000610 INF: FPGA: 'ZDACW 37115' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:27.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:27.338 -07 000000458 INF: FPGA: Recv ZDACR 37115
17-03-17 17:27:27.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:27.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.498 -07 000000429 INF: FPGA: Recv ZSGSRD 35741
17-03-17 17:27:27.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:27.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.508 -07 000000458 INF: FPGA: Recv ZSGSRD 35742
17-03-17 17:27:27.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.518 -07 000000429 INF: FPGA: Recv ZSGSRD 35741
17-03-17 17:27:27.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.528 -07 000000458 INF: FPGA: Recv ZSGSRD 35732
17-03-17 17:27:27.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.538 -07 000000429 INF: FPGA: Recv ZSGSRD 35736
17-03-17 17:27:27.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.548 -07 000000458 INF: FPGA: Recv ZSGSRD 35742
17-03-17 17:27:27.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.558 -07 000000382 INF: FPGA: Recv ZSGSRD 35739
17-03-17 17:27:27.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.568 -07 000000433 INF: FPGA: Recv ZSGSRD 35741
17-03-17 17:27:27.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.578 -07 000000382 INF: FPGA: Recv ZSGSRD 35738
17-03-17 17:27:27.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:27.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35740
17-03-17 17:27:27.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:27.598 -07 000000561 INF: FPGA: Recv ZPIEZORD 31609
17-03-17 17:27:27.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:27.608 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.1 V.
17-03-17 17:27:27.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35739 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35740 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35732 (-169.0 uncal um), Max = 35742 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:27:27.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35739, posNoise = 3, negNoise = 7
17-03-17 17:27:27.608 -07 000000610 INF: Z Motor: After move to -0.169902, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:27.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:27:27.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:27.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:27.608 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:27.608 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:27.608 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:27.608 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:27.608 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:27.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:27.608 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:27.608 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:27.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:27:27.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:27.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:27.618 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:27.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:27:27.618 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:27.628 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:27:27.628 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:27:27.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:27:27.628 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:27:27.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37292 150\n [Camera]
17-03-17 17:27:27.828 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:28.218 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:28.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:28.228 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:28.228 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:28.228 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:27:28.228 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:28.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:28.228 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:28.228 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:28.228 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:27:28.418 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37292 775
17-03-17 17:27:28.568 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:28.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:27:28.608 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:27:28.608 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:28.608 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:28.608 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 17:27:28.608 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:27:28.608 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:28.618 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:28.618 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:27:28.618 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:27:28.758 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:28.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:28.758 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:28.758 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:28.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:27:28.758 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:28.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:28.758 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:28.758 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:28.758 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:27:28.948 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:27:28.948 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:28.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37292 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 17:27:28.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:28.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73828125, Z-Position -0.16991826974553. ------
17-03-17 17:27:28.948 -07 000000632 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:28.948 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17671 mm
17-03-17 17:27:28.948 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:28.958 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:27:28.958 -07 000000429 INF: Y Motor: Moving to 61.5726 mm, started at 60.7383 mm, delta = 0.8343 mm
17-03-17 17:27:28.958 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:28.958 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38603, sync = True, waitForSettling = False)
17-03-17 17:27:28.958 -07 000000433 INF: Z Motor: Moving to -0.176713 mm, started at -0.169918 mm, distance = -6.79 um
17-03-17 17:27:28.968 -07 000000433 INF: FPGA: Xmit ZDACW 38603\n [Z Motor]
17-03-17 17:27:29.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 17:27:29.158 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 17:27:29.158 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:29.158 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 17:27:29.158 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 17:27:29.168 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:29.168 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:29.168 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:27:29.168 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 17:27:29.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 17:27:29.178 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:29.178 -07 000000480 INF: FPGA: Recv YRDPOS 124392
17-03-17 17:27:29.178 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:27:29.178 -07 000000433 INF: FPGA: 'ZDACW 38603' command took 0 ms to send, 207 ms to get response, and 221 ms overall
17-03-17 17:27:29.178 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:29.178 -07 000000632 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 228 ms overall
17-03-17 17:27:29.178 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 217 ms to get response, and 222 ms overall
17-03-17 17:27:29.178 -07 000000429 INF: Y Motor: Encoder = 124392 = motor step 97181.3 = 60.7383 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:29.178 -07 000000429 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:29.178 -07 000000429 INF: Y Motor: Moving 1335 steps-9
17-03-17 17:27:29.188 -07 000000632 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:29.188 -07 000000480 INF: FPGA: Recv ZDACR 38603
17-03-17 17:27:29.188 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 17:27:29.188 -07 000000433 INF: Z Motor: MoveAbsStepped took 228 ms (did NOT wait for settling yet))
17-03-17 17:27:29.198 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:29.388 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:29.388 -07 000000632 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 205 ms overall
17-03-17 17:27:29.568 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:27:29.568 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:27:29.598 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:29.598 -07 000000480 INF: FPGA: Recv YRDPOS 126094
17-03-17 17:27:29.608 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:29.608 -07 000000429 INF: Y Motor: Encoder = 126094 = motor step 98510.9 = 61.5693 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:29.608 -07 000000429 INF: Y Motor: Position error before settling (table move) = -7 encoder counts (-0.003 mm)
17-03-17 17:27:29.608 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.834 mm, average velocity = 2.145 mm/sec
17-03-17 17:27:30.538 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.387829,
17-03-17 17:27:30.558 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:30.558 -07 000000480 INF: FPGA: Recv YRDPOS 126094
17-03-17 17:27:30.568 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.568 -07 000000429 INF: Y Motor: Encoder = 126094 = motor step 98510.9 = 61.5693 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:30.568 -07 000000429 INF: Y Motor: After move to 61.572609, error = -0.003273, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:30.568 -07 000000429 INF: Y Motor: Position error after settling (table move) = -7 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:30.568 -07 000000429 INF: Y Motor: Moved to 61.5693 after 1610 ms (table move)
17-03-17 17:27:30.568 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176713 mm (DAC = 38603)
17-03-17 17:27:30.578 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.578 -07 000000632 INF: FPGA: Recv ZSGSRD 36805
17-03-17 17:27:30.588 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:27:30.588 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.588 -07 000000632 INF: FPGA: Recv ZSGSRD 36793
17-03-17 17:27:30.598 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.608 -07 000000480 INF: FPGA: Recv ZSGSRD 36798
17-03-17 17:27:30.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:27:30.618 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.618 -07 000000480 INF: FPGA: Recv ZSGSRD 36802
17-03-17 17:27:30.628 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.628 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36789
17-03-17 17:27:30.638 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.638 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.638 -07 000000382 INF: FPGA: Recv ZSGSRD 36793
17-03-17 17:27:30.648 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.648 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.648 -07 000000632 INF: FPGA: Recv ZSGSRD 36798
17-03-17 17:27:30.658 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.658 -07 000000569 INF: FPGA: Recv ZSGSRD 36807
17-03-17 17:27:30.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.668 -07 000000382 INF: FPGA: Recv ZSGSRD 36805
17-03-17 17:27:30.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:30.678 -07 000000433 INF: FPGA: Recv ZSGSRD 36798
17-03-17 17:27:30.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.688 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:30.688 -07 000000382 INF: FPGA: Recv ZPIEZORD 33003
17-03-17 17:27:30.698 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:30.698 -07 000000502 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.4 V.
17-03-17 17:27:30.698 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36799 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36798 (-175.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36789 (-175.8 uncal um), Max = 36807 (-175.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:27:30.698 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36799, posNoise = 8, negNoise = 10
17-03-17 17:27:30.698 -07 000000502 INF: Z Motor: After move to -0.176713, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:30.698 -07 000000502 INF: Z Motor: Settle wait time = 1612 ms, measure time = 122 ms (allowed 150 ms), total time = 1734 ms
17-03-17 17:27:30.698 -07 000000502 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:30.728 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1770 ms
17-03-17 17:27:30.728 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:30.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:30.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:30.728 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:30.728 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:30.728 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:30.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:30.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:30.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:30.738 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:30.738 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:30.748 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:27:30.748 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:27:30.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:30.798 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:30.998 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:30.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:30.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:30.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 17:27:31.038 -07 000000632 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:31.038 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:31.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:27:31.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:27:31.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:31.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:27:31.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:27:31.138 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:31.138 -07 000000429 INF: Autofocus start
17-03-17 17:27:31.138 -07 000000429 INF: MeasureProfile start
17-03-17 17:27:31.138 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:31.148 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:31.148 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:31.148 -07 000000429 INF: MeasureProfile done
17-03-17 17:27:31.148 -07 000000429 INF: X=-32  Z correction [um]=-0.2344
17-03-17 17:27:31.148 -07 000000429 INF: Autofocus finished
17-03-17 17:27:31.348 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:31.348 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:31.348 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5693359375, Z-position -0.176727934615796. ----------
17-03-17 17:27:31.348 -07 000000610 INF: Cycle	1	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:31.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37064, sync = True, waitForSettling = True)
17-03-17 17:27:31.358 -07 000000610 INF: Z Motor: Moving to -0.169668 mm, started at -0.176728 mm, distance = 7.06 um
17-03-17 17:27:31.358 -07 000000610 INF: FPGA: Xmit ZDACW 37064\n [Z Motor]
17-03-17 17:27:31.358 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:27:31.368 -07 000000610 INF: FPGA: 'ZDACW 37064' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:31.368 -07 000000632 INF: FPGA: Recv ZDACR 37064
17-03-17 17:27:31.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:31.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:31.498 -07 000000632 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:31.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:31.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35701
17-03-17 17:27:31.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:31.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.538 -07 000000480 INF: FPGA: Recv ZSGSRD 35704
17-03-17 17:27:31.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.548 -07 000000502 INF: FPGA: Recv ZSGSRD 35702
17-03-17 17:27:31.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.558 -07 000000632 INF: FPGA: Recv ZSGSRD 35698
17-03-17 17:27:31.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.568 -07 000000569 INF: FPGA: Recv ZSGSRD 35698
17-03-17 17:27:31.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.578 -07 000000433 INF: FPGA: Recv ZSGSRD 35702
17-03-17 17:27:31.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35694
17-03-17 17:27:31.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.598 -07 000000632 INF: FPGA: Recv ZSGSRD 35701
17-03-17 17:27:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.608 -07 000000502 INF: FPGA: Recv ZSGSRD 35704
17-03-17 17:27:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:31.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35698
17-03-17 17:27:31.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:31.628 -07 000000382 INF: FPGA: Recv ZPIEZORD 31576
17-03-17 17:27:31.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:31.638 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -9.1 V.
17-03-17 17:27:31.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35700 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35701 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35694 (-168.8 uncal um), Max = 35704 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:27:31.638 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35700, posNoise = 4, negNoise = 6
17-03-17 17:27:31.638 -07 000000610 INF: Z Motor: After move to -0.169668, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:31.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:27:31.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:31.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:31.638 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:31.638 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:31.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:31.638 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:31.638 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:31.638 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:31.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:31.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:31.638 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:27:31.638 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:31.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:31.638 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:31.648 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:27:31.648 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:31.648 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:27:31.648 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:27:31.658 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:27:31.658 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:27:31.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37241 150\n [Camera]
17-03-17 17:27:31.858 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:32.248 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 17:27:32.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 17:27:32.248 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:32.248 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:32.248 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) start.
17-03-17 17:27:32.248 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 17:27:32.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 17:27:32.248 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:32.248 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:32.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) start.
17-03-17 17:27:32.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37241 775
17-03-17 17:27:32.588 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:27:32.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:27:32.628 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:27:32.628 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:32.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:27:32.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:27:32.628 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:32.628 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:32.628 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:27:32.638 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:32.638 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:27:32.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:32.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:32.778 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:32.778 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:32.778 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:27:32.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:32.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:32.778 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:32.778 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:32.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:27:32.968 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:27:32.968 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:32.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37241 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:27:32.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:32.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5693359375, Z-Position -0.169667725472001. ------
17-03-17 17:27:32.978 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:32.978 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17648 mm
17-03-17 17:27:32.978 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:32.978 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:32.978 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:27:32.978 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5693 mm, delta = 0.8333 mm
17-03-17 17:27:32.978 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38551, sync = True, waitForSettling = False)
17-03-17 17:27:32.978 -07 000000382 INF: Z Motor: Moving to -0.176475 mm, started at -0.169668 mm, distance = -6.81 um
17-03-17 17:27:32.988 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:32.988 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:32.988 -07 000000433 INF: FPGA: Recv YRDPOS 126094
17-03-17 17:27:32.998 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:27:32.998 -07 000000480 INF: Y Motor: Encoder = 126094 = motor step 98510.9 = 61.5693 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:32.998 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:32.998 -07 000000382 INF: FPGA: Xmit ZDACW 38551\n [Z Motor]
17-03-17 17:27:32.998 -07 000000480 INF: Y Motor: Moving 1333 steps-7
17-03-17 17:27:32.998 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:27:33.008 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:33.008 -07 000000382 INF: FPGA: 'ZDACW 38551' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:27:33.018 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:33.028 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:33.028 -07 000000433 INF: FPGA: Recv ZDACR 38551
17-03-17 17:27:33.038 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:33.038 -07 000000382 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:27:33.158 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:27:33.158 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:27:33.158 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:33.158 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:27:33.158 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:27:33.158 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:33.168 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:33.168 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:27:33.168 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:27:33.168 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:27:33.208 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:33.208 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:27:33.388 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:27:33.388 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:27:33.418 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:33.418 -07 000000433 INF: FPGA: Recv YRDPOS 127796
17-03-17 17:27:33.428 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:27:33.428 -07 000000480 INF: Y Motor: Encoder = 127796 = motor step 99840.6 = 62.4004 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:33.428 -07 000000480 INF: Y Motor: Position error before settling (table move) = -5 encoder counts (-0.002 mm)
17-03-17 17:27:33.428 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.833 mm, average velocity = 2.110 mm/sec
17-03-17 17:27:34.378 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:34.378 -07 000000382 INF: FPGA: Recv YRDPOS 127796
17-03-17 17:27:34.388 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:34.388 -07 000000480 INF: Y Motor: Encoder = 127796 = motor step 99840.6 = 62.4004 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:34.388 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.002216, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:34.388 -07 000000480 INF: Y Motor: Position error after settling (table move) = -5 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:34.388 -07 000000480 INF: Y Motor: Moved to 62.4004 after 1410 ms (table move)
17-03-17 17:27:34.398 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176475 mm (DAC = 38551)
17-03-17 17:27:34.398 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.398 -07 000000382 INF: FPGA: Recv ZSGSRD 36755
17-03-17 17:27:34.408 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.408 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36766
17-03-17 17:27:34.418 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.418 -07 000000382 INF: FPGA: Recv ZSGSRD 36765
17-03-17 17:27:34.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.428 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.428 -07 000000618 INF: FPGA: Recv ZSGSRD 36764
17-03-17 17:27:34.438 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.438 -07 000000429 INF: FPGA: Recv ZSGSRD 36761
17-03-17 17:27:34.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.448 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.448 -07 000000382 INF: FPGA: Recv ZSGSRD 36765
17-03-17 17:27:34.458 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36759
17-03-17 17:27:34.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.468 -07 000000618 INF: FPGA: Recv ZSGSRD 36755
17-03-17 17:27:34.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.478 -07 000000429 INF: FPGA: Recv ZSGSRD 36757
17-03-17 17:27:34.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.488 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:34.488 -07 000000429 INF: FPGA: Recv ZSGSRD 36762
17-03-17 17:27:34.498 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.498 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:34.498 -07 000000480 INF: FPGA: Recv ZPIEZORD 32979
17-03-17 17:27:34.508 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:34.508 -07 000000502 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.4 V.
17-03-17 17:27:34.508 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36761 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36762 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36755 (-175.6 uncal um), Max = 36766 (-175.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:27:34.508 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36761, posNoise = 5, negNoise = 6
17-03-17 17:27:34.508 -07 000000502 INF: Z Motor: After move to -0.176475, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:34.508 -07 000000502 INF: Z Motor: Settle wait time = 1414 ms, measure time = 110 ms (allowed 150 ms), total time = 1524 ms
17-03-17 17:27:34.508 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:34.548 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 17:27:34.548 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:34.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:34.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:34.548 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:34.548 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:34.548 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:34.548 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:34.548 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:34.548 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:34.558 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:34.558 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:34.558 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:27:34.558 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:27:34.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:34.608 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:34.808 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:34.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:34.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:34.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-17 17:27:34.848 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:34.848 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:34.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:27:34.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:27:34.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:34.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:27:34.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:27:34.948 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:34.948 -07 000000502 INF: Autofocus start
17-03-17 17:27:34.948 -07 000000502 INF: MeasureProfile start
17-03-17 17:27:34.958 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:34.958 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:27:34.958 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:34.968 -07 000000502 INF: MeasureProfile done
17-03-17 17:27:34.968 -07 000000502 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 17:27:34.968 -07 000000502 INF: Autofocus finished
17-03-17 17:27:35.158 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:35.158 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:35.158 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.400390625, Z-position -0.176483814554409. ----------
17-03-17 17:27:35.168 -07 000000610 INF: Cycle	1	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:35.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36994, sync = True, waitForSettling = True)
17-03-17 17:27:35.168 -07 000000610 INF: Z Motor: Moving to -0.169348 mm, started at -0.176484 mm, distance = 7.14 um
17-03-17 17:27:35.168 -07 000000610 INF: FPGA: Xmit ZDACW 36994\n [Z Motor]
17-03-17 17:27:35.168 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:27:35.178 -07 000000610 INF: FPGA: 'ZDACW 36994' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:35.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:35.178 -07 000000382 INF: FPGA: Recv ZDACR 36994
17-03-17 17:27:35.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:35.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.338 -07 000000618 INF: FPGA: Recv ZSGSRD 35648
17-03-17 17:27:35.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:35.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.348 -07 000000502 INF: FPGA: Recv ZSGSRD 35651
17-03-17 17:27:35.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.358 -07 000000618 INF: FPGA: Recv ZSGSRD 35650
17-03-17 17:27:35.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.368 -07 000000429 INF: FPGA: Recv ZSGSRD 35656
17-03-17 17:27:35.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.378 -07 000000618 INF: FPGA: Recv ZSGSRD 35647
17-03-17 17:27:35.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.388 -07 000000433 INF: FPGA: Recv ZSGSRD 35648
17-03-17 17:27:35.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.398 -07 000000618 INF: FPGA: Recv ZSGSRD 35652
17-03-17 17:27:35.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.408 -07 000000429 INF: FPGA: Recv ZSGSRD 35651
17-03-17 17:27:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.418 -07 000000382 INF: FPGA: Recv ZSGSRD 35653
17-03-17 17:27:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:35.428 -07 000000429 INF: FPGA: Recv ZSGSRD 35652
17-03-17 17:27:35.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:35.438 -07 000000382 INF: FPGA: Recv ZPIEZORD 31505
17-03-17 17:27:35.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:35.448 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.1 V.
17-03-17 17:27:35.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35651 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35651 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35647 (-168.5 uncal um), Max = 35656 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:27:35.448 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35651, posNoise = 5, negNoise = 4
17-03-17 17:27:35.448 -07 000000610 INF: Z Motor: After move to -0.169348, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:35.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:27:35.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:35.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:35.448 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:35.448 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:35.448 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:35.448 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:35.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:35.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:35.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:35.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:35.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:27:35.448 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:35.458 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:35.458 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:35.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:27:35.458 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:35.468 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:27:35.468 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:27:35.468 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:27:35.468 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:27:35.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37171 150\n [Camera]
17-03-17 17:27:35.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:35.928 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.37438,
17-03-17 17:27:36.058 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:36.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:36.058 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:36.058 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:36.058 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) start.
17-03-17 17:27:36.058 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:36.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:36.058 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:36.058 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:36.058 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:27:36.248 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37171 776
17-03-17 17:27:36.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:36.438 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:27:36.438 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:27:36.438 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:36.438 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:27:36.438 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:27:36.438 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:36.438 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:36.438 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:27:36.438 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:36.448 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:27:36.498 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:36.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:36.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:36.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:36.588 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:36.588 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:36.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 17:27:36.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:36.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:36.588 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:36.598 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:36.598 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 17:27:36.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:27:36.778 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:36.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37171 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:27:36.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:36.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.400390625, Z-Position -0.169352939077055. ------
17-03-17 17:27:36.788 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:36.788 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17616 mm
17-03-17 17:27:36.788 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:36.788 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:27:36.788 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38482, sync = True, waitForSettling = False)
17-03-17 17:27:36.788 -07 000000431 INF: Z Motor: Moving to -0.176159 mm, started at -0.169353 mm, distance = -6.81 um
17-03-17 17:27:36.788 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.4004 mm, delta = 0.8322 mm
17-03-17 17:27:36.788 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:36.798 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:36.798 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:36.798 -07 000000429 INF: FPGA: Recv YRDPOS 127796
17-03-17 17:27:36.808 -07 000000431 INF: FPGA: Xmit ZDACW 38482\n [Z Motor]
17-03-17 17:27:36.808 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:27:36.808 -07 000000502 INF: Y Motor: Encoder = 127796 = motor step 99840.6 = 62.4004 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:36.808 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:36.808 -07 000000502 INF: Y Motor: Moving 1332 steps-5
17-03-17 17:27:36.808 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:27:36.818 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:36.818 -07 000000431 INF: FPGA: 'ZDACW 38482' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:27:36.828 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:36.838 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:36.838 -07 000000541 INF: FPGA: Recv ZDACR 38482
17-03-17 17:27:36.848 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:36.848 -07 000000431 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:27:36.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:27:36.968 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:27:36.968 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:36.968 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:27:36.968 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:27:36.968 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:36.978 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:36.978 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:27:36.978 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:27:36.988 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:27:37.018 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:37.018 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:27:37.198 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 17:27:37.198 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:27:37.228 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:37.228 -07 000000541 INF: FPGA: Recv YRDPOS 129494
17-03-17 17:27:37.238 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:37.238 -07 000000502 INF: Y Motor: Encoder = 129494 = motor step 101167.2 = 63.2295 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:37.238 -07 000000502 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm)
17-03-17 17:27:37.238 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 17:27:38.188 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:38.188 -07 000000480 INF: FPGA: Recv YRDPOS 129494
17-03-17 17:27:38.198 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.198 -07 000000502 INF: Y Motor: Encoder = 129494 = motor step 101167.2 = 63.2295 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:38.198 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.003117, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:38.198 -07 000000502 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:38.198 -07 000000502 INF: Y Motor: Moved to 63.2295 after 1410 ms (table move)
17-03-17 17:27:38.198 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176159 mm (DAC = 38482)
17-03-17 17:27:38.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.208 -07 000000632 INF: FPGA: Recv ZSGSRD 36720
17-03-17 17:27:38.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:27:38.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.208 -07 000000569 INF: FPGA: Recv ZSGSRD 36705
17-03-17 17:27:38.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:38.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.218 -07 000000632 INF: FPGA: Recv ZSGSRD 36719
17-03-17 17:27:38.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36718
17-03-17 17:27:38.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.238 -07 000000632 INF: FPGA: Recv ZSGSRD 36712
17-03-17 17:27:38.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.248 -07 000000429 INF: FPGA: Recv ZSGSRD 36723
17-03-17 17:27:38.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.258 -07 000000480 INF: FPGA: Recv ZSGSRD 36710
17-03-17 17:27:38.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.268 -07 000000569 INF: FPGA: Recv ZSGSRD 36706
17-03-17 17:27:38.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.278 -07 000000541 INF: FPGA: Recv ZSGSRD 36711
17-03-17 17:27:38.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:38.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36710
17-03-17 17:27:38.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.298 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:38.298 -07 000000480 INF: FPGA: Recv ZPIEZORD 32921
17-03-17 17:27:38.308 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.308 -07 000000382 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.4 V.
17-03-17 17:27:38.308 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36713 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36712 (-175.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36705 (-175.2 uncal um), Max = 36723 (-175.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:27:38.308 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36713, posNoise = 10, negNoise = 8
17-03-17 17:27:38.308 -07 000000382 INF: Z Motor: After move to -0.176159, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:38.308 -07 000000382 INF: Z Motor: Settle wait time = 1413 ms, measure time = 101 ms (allowed 150 ms), total time = 1514 ms
17-03-17 17:27:38.308 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:38.358 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 17:27:38.358 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:38.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:38.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:38.358 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:38.358 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:38.358 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:38.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:38.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:38.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:38.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:38.368 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:38.378 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:27:38.378 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:27:38.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:38.418 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:38.618 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:38.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:38.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:38.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 17:27:38.658 -07 000000632 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:38.658 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:38.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:27:38.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:27:38.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:38.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:27:38.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:27:38.758 -07 000000480 INF: Autofocus start
17-03-17 17:27:38.758 -07 000000480 INF: MeasureProfile start
17-03-17 17:27:38.758 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:38.758 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:38.768 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:38.768 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:38.768 -07 000000480 INF: MeasureProfile done
17-03-17 17:27:38.768 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:27:38.768 -07 000000480 INF: Autofocus finished
17-03-17 17:27:38.968 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:38.968 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:27:38.968 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2294921875, Z-position -0.176175452371605. ----------
17-03-17 17:27:38.978 -07 000000610 INF: Cycle	1	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:38.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36997, sync = True, waitForSettling = True)
17-03-17 17:27:38.978 -07 000000610 INF: Z Motor: Moving to -0.169361 mm, started at -0.176175 mm, distance = 6.81 um
17-03-17 17:27:38.978 -07 000000610 INF: FPGA: Xmit ZDACW 36997\n [Z Motor]
17-03-17 17:27:38.978 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:27:38.988 -07 000000610 INF: FPGA: 'ZDACW 36997' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:38.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:38.988 -07 000000569 INF: FPGA: Recv ZDACR 36997
17-03-17 17:27:38.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:38.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:39.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.148 -07 000000632 INF: FPGA: Recv ZSGSRD 35653
17-03-17 17:27:39.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:39.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.158 -07 000000569 INF: FPGA: Recv ZSGSRD 35654
17-03-17 17:27:39.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.168 -07 000000632 INF: FPGA: Recv ZSGSRD 35651
17-03-17 17:27:39.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.178 -07 000000431 INF: FPGA: Recv ZSGSRD 35655
17-03-17 17:27:39.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.188 -07 000000632 INF: FPGA: Recv ZSGSRD 35653
17-03-17 17:27:39.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35652
17-03-17 17:27:39.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.208 -07 000000632 INF: FPGA: Recv ZSGSRD 35652
17-03-17 17:27:39.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35654
17-03-17 17:27:39.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.228 -07 000000632 INF: FPGA: Recv ZSGSRD 35656
17-03-17 17:27:39.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:39.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35652
17-03-17 17:27:39.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:39.248 -07 000000632 INF: FPGA: Recv ZPIEZORD 31503
17-03-17 17:27:39.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:39.268 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -9.2 V.
17-03-17 17:27:39.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35653 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35653 (-168.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35651 (-168.5 uncal um), Max = 35656 (-168.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:27:39.268 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35653, posNoise = 3, negNoise = 2
17-03-17 17:27:39.268 -07 000000610 INF: Z Motor: After move to -0.169361, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:39.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:27:39.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:39.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:39.268 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:39.268 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:39.268 -07 000000632 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:39.268 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:39.268 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:39.268 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:39.268 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:27:39.268 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:39.268 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:27:39.268 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:39.278 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:39.278 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:39.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:27:39.278 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:39.288 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:27:39.288 -07 000000632 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:27:39.288 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 17:27:39.288 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:27:39.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37173 150\n [Camera]
17-03-17 17:27:39.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 17:27:39.878 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:39.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:39.878 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:39.878 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:39.878 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 17:27:39.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:39.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:39.888 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:39.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:39.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 17:27:40.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37173 775
17-03-17 17:27:40.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:40.258 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:27:40.258 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:27:40.258 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:40.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:27:40.258 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:27:40.258 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:40.268 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:27:40.268 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:27:40.268 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:27:40.268 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:27:40.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:40.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:40.408 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:40.408 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:40.408 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 17:27:40.418 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:40.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:40.418 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:40.418 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:40.418 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 17:27:40.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:27:40.598 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:40.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37173 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-17 17:27:40.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:40.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2294921875, Z-Position -0.169365787501338. ------
17-03-17 17:27:40.608 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:40.608 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17617 mm
17-03-17 17:27:40.608 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:40.608 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:27:40.608 -07 000000458 INF: Y Motor: Moving to 64.0626 mm, started at 63.2295 mm, delta = 0.8331 mm
17-03-17 17:27:40.608 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:40.618 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:27:40.618 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38484, sync = True, waitForSettling = False)
17-03-17 17:27:40.618 -07 000000429 INF: Z Motor: Moving to -0.176168 mm, started at -0.169366 mm, distance = -6.80 um
17-03-17 17:27:40.618 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:40.618 -07 000000480 INF: FPGA: Recv YRDPOS 129494
17-03-17 17:27:40.628 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:40.628 -07 000000458 INF: Y Motor: Encoder = 129494 = motor step 101167.2 = 63.2295 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:40.628 -07 000000458 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:40.628 -07 000000458 INF: Y Motor: Moving 1333 steps-6
17-03-17 17:27:40.628 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:40.638 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:40.648 -07 000000429 INF: FPGA: Xmit ZDACW 38484\n [Z Motor]
17-03-17 17:27:40.648 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:27:40.658 -07 000000429 INF: FPGA: 'ZDACW 38484' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:27:40.668 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:40.668 -07 000000632 INF: FPGA: Recv ZDACR 38484
17-03-17 17:27:40.678 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:27:40.678 -07 000000429 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 17:27:40.788 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:27:40.788 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:27:40.788 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:40.788 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:27:40.788 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:27:40.788 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:40.798 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:40.798 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:27:40.798 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:27:40.798 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:27:40.838 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:40.838 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:27:40.998 -07 000000632 INF: FPGA: Recv YMVTILE
17-03-17 17:27:40.998 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 17:27:41.038 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:41.038 -07 000000431 INF: FPGA: Recv YRDPOS 131199
17-03-17 17:27:41.048 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:41.048 -07 000000458 INF: Y Motor: Encoder = 131199 = motor step 102499.2 = 64.0620 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:41.048 -07 000000458 INF: Y Motor: Position error before settling (table move) = -1 encoder counts (0.000 mm)
17-03-17 17:27:41.048 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.833 mm, average velocity = 2.204 mm/sec
17-03-17 17:27:41.308 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.358205,
17-03-17 17:27:41.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:41.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:41.998 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:41.998 -07 000000429 INF: FPGA: Recv YRDPOS 131199
17-03-17 17:27:42.008 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.008 -07 000000458 INF: Y Motor: Encoder = 131199 = motor step 102499.2 = 64.0620 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:42.008 -07 000000458 INF: Y Motor: After move to 64.062607, error = -0.000595, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:42.008 -07 000000458 INF: Y Motor: Position error after settling (table move) = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:42.008 -07 000000458 INF: Y Motor: Moved to 64.0620 after 1394 ms (table move)
17-03-17 17:27:42.008 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176168 mm (DAC = 38484)
17-03-17 17:27:42.008 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.018 -07 000000480 INF: FPGA: Recv ZSGSRD 36717
17-03-17 17:27:42.018 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:27:42.018 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.018 -07 000000480 INF: FPGA: Recv ZSGSRD 36716
17-03-17 17:27:42.028 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:42.028 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.028 -07 000000382 INF: FPGA: Recv ZSGSRD 36711
17-03-17 17:27:42.038 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:27:42.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.038 -07 000000480 INF: FPGA: Recv ZSGSRD 36711
17-03-17 17:27:42.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.048 -07 000000541 INF: FPGA: Recv ZSGSRD 36712
17-03-17 17:27:42.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.058 -07 000000502 INF: FPGA: Recv ZSGSRD 36714
17-03-17 17:27:42.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36707
17-03-17 17:27:42.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36714
17-03-17 17:27:42.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.088 -07 000000541 INF: FPGA: Recv ZSGSRD 36715
17-03-17 17:27:42.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.098 -07 000000502 INF: FPGA: Recv ZSGSRD 36721
17-03-17 17:27:42.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.108 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:42.108 -07 000000480 INF: FPGA: Recv ZPIEZORD 32912
17-03-17 17:27:42.118 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.118 -07 000000561 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.4 V.
17-03-17 17:27:42.118 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36714 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36714 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36707 (-175.2 uncal um), Max = 36721 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:27:42.118 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36714, posNoise = 7, negNoise = 7
17-03-17 17:27:42.118 -07 000000561 INF: Z Motor: After move to -0.176168, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:42.118 -07 000000561 INF: Z Motor: Settle wait time = 1397 ms, measure time = 103 ms (allowed 150 ms), total time = 1500 ms
17-03-17 17:27:42.118 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:42.168 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1553 ms
17-03-17 17:27:42.168 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:42.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:42.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:42.168 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:42.168 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:42.168 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:42.168 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:42.168 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:27:42.168 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:42.178 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:42.178 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:42.178 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:27:42.178 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:27:42.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:42.228 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:42.428 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:42.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:42.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:42.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 17:27:42.468 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:42.468 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:42.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:27:42.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:27:42.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:42.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:27:42.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:27:42.568 -07 000000433 INF: Autofocus start
17-03-17 17:27:42.568 -07 000000433 INF: MeasureProfile start
17-03-17 17:27:42.568 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:42.568 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:42.578 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:27:42.578 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:42.578 -07 000000433 INF: MeasureProfile done
17-03-17 17:27:42.578 -07 000000433 INF: X=-80  Z correction [um]=-0.4885566
17-03-17 17:27:42.578 -07 000000433 INF: Autofocus finished
17-03-17 17:27:42.778 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:42.778 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:42.778 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.06201171875, Z-position -0.176181876583747. ----------
17-03-17 17:27:42.788 -07 000000610 INF: Cycle	1	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:42.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36890, sync = True, waitForSettling = True)
17-03-17 17:27:42.788 -07 000000610 INF: Z Motor: Moving to -0.168872 mm, started at -0.176182 mm, distance = 7.31 um
17-03-17 17:27:42.788 -07 000000610 INF: FPGA: Xmit ZDACW 36890\n [Z Motor]
17-03-17 17:27:42.788 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:27:42.798 -07 000000610 INF: FPGA: 'ZDACW 36890' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:27:42.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:42.798 -07 000000458 INF: FPGA: Recv ZDACR 36890
17-03-17 17:27:42.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:42.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35579
17-03-17 17:27:42.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.968 -07 000000541 INF: FPGA: Recv ZSGSRD 35578
17-03-17 17:27:42.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.978 -07 000000458 INF: FPGA: Recv ZSGSRD 35577
17-03-17 17:27:42.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.988 -07 000000431 INF: FPGA: Recv ZSGSRD 35574
17-03-17 17:27:42.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:42.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:42.998 -07 000000458 INF: FPGA: Recv ZSGSRD 35583
17-03-17 17:27:43.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:43.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:43.008 -07 000000480 INF: FPGA: Recv ZSGSRD 35577
17-03-17 17:27:43.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:43.018 -07 000000561 INF: FPGA: Recv ZSGSRD 35577
17-03-17 17:27:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:43.028 -07 000000458 INF: FPGA: Recv ZSGSRD 35580
17-03-17 17:27:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:43.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35571
17-03-17 17:27:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:43.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35575
17-03-17 17:27:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:43.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:43.058 -07 000000480 INF: FPGA: Recv ZPIEZORD 31413
17-03-17 17:27:43.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:43.068 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.2 V.
17-03-17 17:27:43.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35577 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35577 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35571 (-168.0 uncal um), Max = 35583 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:27:43.068 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35577, posNoise = 6, negNoise = 6
17-03-17 17:27:43.068 -07 000000610 INF: Z Motor: After move to -0.168872, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:43.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:27:43.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:43.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:43.068 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:43.068 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:43.068 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:43.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:43.068 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:43.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:43.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:27:43.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:43.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:43.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:43.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:27:43.078 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:43.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:43.078 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:43.088 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:27:43.088 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:27:43.088 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:27:43.088 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:27:43.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37067 150\n [Camera]
17-03-17 17:27:43.288 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:43.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:43.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:43.678 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:43.678 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:43.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2728591576, 0x0, 391868352) start.
17-03-17 17:27:43.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:43.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:43.678 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:43.838 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:43.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:27:43.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37067 775
17-03-17 17:27:44.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:44.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2728591576, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 17:27:44.088 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:27:44.088 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:44.088 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:44.088 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 17:27:44.208 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:27:44.208 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:27:44.208 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:44.208 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:44.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:44.208 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:44.208 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:44.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:44.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:44.218 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:44.218 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-17 17:27:44.218 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:44.218 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2764013840, 0x0, 418435064) start.
17-03-17 17:27:44.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:27:44.488 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:44.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37067 150' command took 2 ms to send, 1399 ms to get response, and 1404 ms overall
17-03-17 17:27:44.498 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:44.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 17:27:44.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:44.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.06201171875, Z-Position -0.168877547378565. ------
17-03-17 17:27:44.498 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:44.498 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17568 mm
17-03-17 17:27:44.498 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:44.498 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:27:44.498 -07 000000433 INF: Y Motor: Moving to 64.8926 mm, started at 64.0620 mm, delta = 0.8306 mm
17-03-17 17:27:44.498 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38377, sync = True, waitForSettling = False)
17-03-17 17:27:44.498 -07 000000429 INF: Z Motor: Moving to -0.175679 mm, started at -0.168878 mm, distance = -6.80 um
17-03-17 17:27:44.508 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:44.518 -07 000000429 INF: FPGA: Xmit ZDACW 38377\n [Z Motor]
17-03-17 17:27:44.598 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2764013840, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:27:44.598 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:27:44.598 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:44.598 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:44.608 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:27:44.618 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:44.618 -07 000000458 INF: FPGA: Recv YRDPOS 131200
17-03-17 17:27:44.618 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:27:44.618 -07 000000429 INF: FPGA: 'ZDACW 38377' command took 0 ms to send, 95 ms to get response, and 116 ms overall
17-03-17 17:27:44.618 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:44.618 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 105 ms to get response, and 117 ms overall
17-03-17 17:27:44.618 -07 000000433 INF: Y Motor: Encoder = 131200 = motor step 102500.0 = 64.0625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:44.618 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 115 ms to get response, and 119 ms overall
17-03-17 17:27:44.628 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:44.628 -07 000000458 INF: FPGA: Recv ZDACR 38377
17-03-17 17:27:44.628 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:27:44.628 -07 000000429 INF: Z Motor: MoveAbsStepped took 122 ms (did NOT wait for settling yet))
17-03-17 17:27:44.628 -07 000000433 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:44.628 -07 000000433 INF: Y Motor: Moving 1328 steps-1
17-03-17 17:27:44.638 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:44.828 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:44.828 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-17 17:27:44.868 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:27:44.868 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:27:44.868 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:44.878 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:44.878 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 664 ms.
17-03-17 17:27:45.008 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 17:27:45.008 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 17:27:45.038 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:45.038 -07 000000458 INF: FPGA: Recv YRDPOS 132883
17-03-17 17:27:45.048 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:27:45.048 -07 000000433 INF: Y Motor: Encoder = 132883 = motor step 103814.8 = 64.8843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:45.048 -07 000000433 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:27:45.048 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.831 mm, average velocity = 2.152 mm/sec
17-03-17 17:27:45.998 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:45.998 -07 000000502 INF: FPGA: Recv YRDPOS 132883
17-03-17 17:27:46.008 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:46.008 -07 000000433 INF: Y Motor: Encoder = 132883 = motor step 103814.8 = 64.8843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:46.018 -07 000000433 INF: Y Motor: After move to 64.892609, error = -0.008331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:46.018 -07 000000433 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:46.018 -07 000000433 INF: Y Motor: Moved to 64.8843 after 1519 ms (table move)
17-03-17 17:27:46.028 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175679 mm (DAC = 38377)
17-03-17 17:27:46.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.038 -07 000000433 INF: FPGA: Recv ZSGSRD 36646
17-03-17 17:27:46.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:27:46.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.048 -07 000000502 INF: FPGA: Recv ZSGSRD 36632
17-03-17 17:27:46.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.058 -07 000000458 INF: FPGA: Recv ZSGSRD 36629
17-03-17 17:27:46.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.068 -07 000000502 INF: FPGA: Recv ZSGSRD 36634
17-03-17 17:27:46.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.078 -07 000000458 INF: FPGA: Recv ZSGSRD 36632
17-03-17 17:27:46.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.088 -07 000000502 INF: FPGA: Recv ZSGSRD 36644
17-03-17 17:27:46.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.098 -07 000000433 INF: FPGA: Recv ZSGSRD 36646
17-03-17 17:27:46.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.108 -07 000000618 INF: FPGA: Recv ZSGSRD 36637
17-03-17 17:27:46.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.118 -07 000000502 INF: FPGA: Recv ZSGSRD 36642
17-03-17 17:27:46.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.128 -07 000000429 INF: FPGA: Recv ZSGSRD 36632
17-03-17 17:27:46.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.138 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:46.138 -07 000000433 INF: FPGA: Recv ZPIEZORD 32802
17-03-17 17:27:46.148 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.148 -07 000000561 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.5 V.
17-03-17 17:27:46.148 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36637 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36629 (-174.7 uncal um), Max = 36646 (-174.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:27:46.148 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36637, posNoise = 9, negNoise = 8
17-03-17 17:27:46.148 -07 000000561 INF: Z Motor: After move to -0.175679, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:46.148 -07 000000561 INF: Z Motor: Settle wait time = 1523 ms, measure time = 119 ms (allowed 150 ms), total time = 1642 ms
17-03-17 17:27:46.148 -07 000000561 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:46.188 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1684 ms
17-03-17 17:27:46.188 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:46.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:46.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:46.188 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:46.188 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:46.188 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:46.188 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:46.188 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:46.188 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:46.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:46.198 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:46.208 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:27:46.208 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:27:46.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:46.248 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:46.448 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:46.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:46.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:46.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 17:27:46.498 -07 000000502 INF: FPGA: Recv @CAMSNAP 283
17-03-17 17:27:46.498 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:46.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 17:27:46.498 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:46.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:27:46.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:46.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:27:46.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:27:46.588 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:46.598 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:46.598 -07 000000458 INF: Autofocus start
17-03-17 17:27:46.598 -07 000000458 INF: MeasureProfile start
17-03-17 17:27:46.598 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:46.608 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:46.608 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:46.608 -07 000000458 INF: MeasureProfile done
17-03-17 17:27:46.608 -07 000000458 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 17:27:46.608 -07 000000458 INF: Autofocus finished
17-03-17 17:27:46.668 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.313673,
17-03-17 17:27:46.808 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:46.808 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:46.808 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.88427734375, Z-position -0.175687212248831. ----------
17-03-17 17:27:46.818 -07 000000610 INF: Cycle	1	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:46.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-17 17:27:46.818 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175687 mm, distance = 7.14 um
17-03-17 17:27:46.818 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-17 17:27:46.818 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:27:46.828 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:46.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:46.828 -07 000000480 INF: FPGA: Recv ZDACR 36820
17-03-17 17:27:46.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:46.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.988 -07 000000502 INF: FPGA: Recv ZSGSRD 35527
17-03-17 17:27:46.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:46.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:46.998 -07 000000618 INF: FPGA: Recv ZSGSRD 35528
17-03-17 17:27:47.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.008 -07 000000502 INF: FPGA: Recv ZSGSRD 35526
17-03-17 17:27:47.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.018 -07 000000480 INF: FPGA: Recv ZSGSRD 35528
17-03-17 17:27:47.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.028 -07 000000569 INF: FPGA: Recv ZSGSRD 35530
17-03-17 17:27:47.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35530
17-03-17 17:27:47.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.048 -07 000000502 INF: FPGA: Recv ZSGSRD 35529
17-03-17 17:27:47.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.058 -07 000000458 INF: FPGA: Recv ZSGSRD 35527
17-03-17 17:27:47.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.068 -07 000000502 INF: FPGA: Recv ZSGSRD 35527
17-03-17 17:27:47.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:47.078 -07 000000458 INF: FPGA: Recv ZSGSRD 35526
17-03-17 17:27:47.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:47.088 -07 000000502 INF: FPGA: Recv ZPIEZORD 31350
17-03-17 17:27:47.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:47.098 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.2 V.
17-03-17 17:27:47.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35526 (-167.7 uncal um), Max = 35530 (-167.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:27:47.098 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 2, negNoise = 2
17-03-17 17:27:47.098 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:47.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:27:47.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:47.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:47.098 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:47.098 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:47.098 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:47.098 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:47.098 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:47.098 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:47.098 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:27:47.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:47.098 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:47.098 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:47.108 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:27:47.108 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:47.108 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:47.108 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:47.118 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:27:47.118 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:27:47.118 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:27:47.118 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:27:47.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36997 150\n [Camera]
17-03-17 17:27:47.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:47.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:47.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:47.708 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:47.708 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:47.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:47.708 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:47.708 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:47.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1055526960, 0x0, 418435064) start.
17-03-17 17:27:47.718 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:47.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2724186272, 0x0, 391868352) start.
17-03-17 17:27:47.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36997 775
17-03-17 17:27:48.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 17:27:48.088 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1055526960, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:27:48.088 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:27:48.088 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:48.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2724186272, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 17:27:48.088 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:27:48.088 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:48.088 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:48.088 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:48.088 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:27:48.098 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:27:48.238 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:48.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:48.238 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:48.238 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:48.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) start.
17-03-17 17:27:48.238 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:48.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:48.238 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:48.238 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:48.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1126371488, 0x0, 418435064) start.
17-03-17 17:27:48.428 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:27:48.428 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:48.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36997 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:27:48.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:48.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.88427734375, Z-Position -0.168562760983618. ------
17-03-17 17:27:48.438 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:48.438 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17536 mm
17-03-17 17:27:48.438 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:48.438 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:27:48.438 -07 000000433 INF: Y Motor: Moving to 65.7226 mm, started at 64.8843 mm, delta = 0.8383 mm
17-03-17 17:27:48.438 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38308, sync = True, waitForSettling = False)
17-03-17 17:27:48.438 -07 000000458 INF: Z Motor: Moving to -0.175363 mm, started at -0.168563 mm, distance = -6.80 um
17-03-17 17:27:48.448 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:48.458 -07 000000458 INF: FPGA: Xmit ZDACW 38308\n [Z Motor]
17-03-17 17:27:48.618 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:27:48.618 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:27:48.618 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:48.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1126371488, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:27:48.618 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:27:48.618 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:48.628 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:48.628 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:27:48.628 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:27:48.628 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:27:48.638 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:48.638 -07 000000561 INF: FPGA: Recv YRDPOS 132883
17-03-17 17:27:48.638 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:27:48.638 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 197 ms to get response, and 204 ms overall
17-03-17 17:27:48.638 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 187 ms to get response, and 201 ms overall
17-03-17 17:27:48.638 -07 000000433 INF: Y Motor: Encoder = 132883 = motor step 103814.8 = 64.8843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:48.638 -07 000000433 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:48.638 -07 000000433 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:27:48.638 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:48.638 -07 000000458 INF: FPGA: 'ZDACW 38308' command took 0 ms to send, 177 ms to get response, and 201 ms overall
17-03-17 17:27:48.648 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:48.658 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:48.658 -07 000000569 INF: FPGA: Recv ZDACR 38308
17-03-17 17:27:48.668 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:27:48.668 -07 000000458 INF: Z Motor: MoveAbsStepped took 224 ms (did NOT wait for settling yet))
17-03-17 17:27:48.848 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:48.848 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 205 ms to get response, and 207 ms overall
17-03-17 17:27:49.018 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 17:27:49.018 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 17:27:49.048 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:49.058 -07 000000458 INF: FPGA: Recv YRDPOS 134593
17-03-17 17:27:49.058 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:27:49.058 -07 000000433 INF: Y Motor: Encoder = 134593 = motor step 105150.8 = 65.7192 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:49.058 -07 000000433 INF: Y Motor: Position error before settling (table move) = -7 encoder counts (-0.003 mm)
17-03-17 17:27:49.058 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.206 mm/sec
17-03-17 17:27:50.008 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:50.008 -07 000000569 INF: FPGA: Recv YRDPOS 134593
17-03-17 17:27:50.018 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:50.018 -07 000000433 INF: Y Motor: Encoder = 134593 = motor step 105150.8 = 65.7192 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:50.018 -07 000000433 INF: Y Motor: After move to 65.722610, error = -0.003372, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:50.018 -07 000000433 INF: Y Motor: Position error after settling (table move) = -7 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:50.018 -07 000000433 INF: Y Motor: Moved to 65.7192 after 1580 ms (table move)
17-03-17 17:27:50.028 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175363 mm (DAC = 38308)
17-03-17 17:27:50.028 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.028 -07 000000480 INF: FPGA: Recv ZSGSRD 36588
17-03-17 17:27:50.038 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.038 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.038 -07 000000561 INF: FPGA: Recv ZSGSRD 36583
17-03-17 17:27:50.048 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.048 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.048 -07 000000458 INF: FPGA: Recv ZSGSRD 36588
17-03-17 17:27:50.058 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.058 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.058 -07 000000433 INF: FPGA: Recv ZSGSRD 36595
17-03-17 17:27:50.068 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.068 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.068 -07 000000433 INF: FPGA: Recv ZSGSRD 36588
17-03-17 17:27:50.078 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36596
17-03-17 17:27:50.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.088 -07 000000433 INF: FPGA: Recv ZSGSRD 36590
17-03-17 17:27:50.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.098 -07 000000433 INF: FPGA: Recv ZSGSRD 36584
17-03-17 17:27:50.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.108 -07 000000561 INF: FPGA: Recv ZSGSRD 36586
17-03-17 17:27:50.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.118 -07 000000480 INF: FPGA: Recv ZSGSRD 36584
17-03-17 17:27:50.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.128 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:50.128 -07 000000561 INF: FPGA: Recv ZPIEZORD 32721
17-03-17 17:27:50.138 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.138 -07 000000618 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.845 V. Piezo Error = -8.6 V.
17-03-17 17:27:50.138 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36588 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36588 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36583 (-174.5 uncal um), Max = 36596 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:27:50.138 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36588, posNoise = 8, negNoise = 5
17-03-17 17:27:50.138 -07 000000618 INF: Z Motor: After move to -0.175363, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:50.138 -07 000000618 INF: Z Motor: Settle wait time = 1584 ms, measure time = 111 ms (allowed 150 ms), total time = 1695 ms
17-03-17 17:27:50.138 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:50.178 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-17 17:27:50.178 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:50.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:50.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:50.178 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:50.178 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:50.178 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:50.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:50.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:50.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:50.188 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:50.188 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:50.198 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:27:50.198 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:27:50.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:50.248 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:50.448 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:50.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:50.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:50.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 17:27:50.488 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:50.488 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:50.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:27:50.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 17:27:50.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:50.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:27:50.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:27:50.588 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:50.588 -07 000000480 INF: Autofocus start
17-03-17 17:27:50.588 -07 000000480 INF: MeasureProfile start
17-03-17 17:27:50.598 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:50.598 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 17:27:50.598 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:50.598 -07 000000480 INF: MeasureProfile done
17-03-17 17:27:50.598 -07 000000480 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:27:50.598 -07 000000480 INF: Autofocus finished
17-03-17 17:27:50.798 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:50.798 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:27:50.808 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71923828125, Z-position -0.175372425853885. ----------
17-03-17 17:27:50.808 -07 000000610 INF: Cycle	1	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:50.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36787, sync = True, waitForSettling = True)
17-03-17 17:27:50.808 -07 000000610 INF: Z Motor: Moving to -0.168400 mm, started at -0.175372 mm, distance = 6.97 um
17-03-17 17:27:50.808 -07 000000610 INF: FPGA: Xmit ZDACW 36787\n [Z Motor]
17-03-17 17:27:50.808 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:27:50.818 -07 000000610 INF: FPGA: 'ZDACW 36787' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:27:50.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:50.818 -07 000000480 INF: FPGA: Recv ZDACR 36787
17-03-17 17:27:50.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:50.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35505
17-03-17 17:27:50.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:50.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.988 -07 000000433 INF: FPGA: Recv ZSGSRD 35501
17-03-17 17:27:50.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:50.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:50.998 -07 000000618 INF: FPGA: Recv ZSGSRD 35505
17-03-17 17:27:51.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:51.008 -07 000000561 INF: FPGA: Recv ZSGSRD 35508
17-03-17 17:27:51.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:51.018 -07 000000569 INF: FPGA: Recv ZSGSRD 35503
17-03-17 17:27:51.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:51.028 -07 000000458 INF: FPGA: Recv ZSGSRD 35505
17-03-17 17:27:51.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:51.038 -07 000000433 INF: FPGA: Recv ZSGSRD 35504
17-03-17 17:27:51.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:51.048 -07 000000561 INF: FPGA: Recv ZSGSRD 35510
17-03-17 17:27:51.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:51.058 -07 000000458 INF: FPGA: Recv ZSGSRD 35505
17-03-17 17:27:51.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:51.068 -07 000000561 INF: FPGA: Recv ZSGSRD 35502
17-03-17 17:27:51.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:51.078 -07 000000458 INF: FPGA: Recv ZPIEZORD 31299
17-03-17 17:27:51.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:51.088 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.3 V.
17-03-17 17:27:51.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35505 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35505 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35501 (-167.5 uncal um), Max = 35510 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:27:51.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35505, posNoise = 5, negNoise = 4
17-03-17 17:27:51.088 -07 000000610 INF: Z Motor: After move to -0.168400, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:51.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:27:51.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:51.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:51.088 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:51.088 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:51.088 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:51.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:51.088 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:51.088 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:51.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:27:51.088 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:51.088 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:51.088 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:51.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:27:51.098 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:51.098 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:27:51.098 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:51.098 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:27:51.098 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:27:51.108 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:27:51.108 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:27:51.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36964 150\n [Camera]
17-03-17 17:27:51.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:51.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:51.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:27:51.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:27:51.698 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:51.698 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:51.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:27:51.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:27:51.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:27:51.698 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:51.698 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:51.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:27:51.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36964 775
17-03-17 17:27:52.038 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.325827,
17-03-17 17:27:52.038 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:52.078 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:27:52.078 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:27:52.078 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:52.078 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:27:52.078 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:27:52.078 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:52.078 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:52.078 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:27:52.078 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:52.088 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:27:52.228 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:52.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:52.228 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:52.228 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:52.228 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:27:52.228 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:52.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:52.228 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:52.228 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:52.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:27:52.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:27:52.418 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:52.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36964 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:27:52.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:52.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71923828125, Z-Position -0.168415004104358. ------
17-03-17 17:27:52.428 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:52.428 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17521 mm
17-03-17 17:27:52.428 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:52.428 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:52.428 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:27:52.428 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7192 mm, delta = 0.8334 mm
17-03-17 17:27:52.438 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:27:52.438 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38275, sync = True, waitForSettling = False)
17-03-17 17:27:52.438 -07 000000433 INF: Z Motor: Moving to -0.175212 mm, started at -0.168415 mm, distance = -6.80 um
17-03-17 17:27:52.438 -07 000000433 INF: FPGA: Xmit ZDACW 38275\n [Z Motor]
17-03-17 17:27:52.438 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:27:52.448 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:52.448 -07 000000433 INF: FPGA: 'ZDACW 38275' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:52.458 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:52.458 -07 000000482 INF: FPGA: Recv YRDPOS 134593
17-03-17 17:27:52.468 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:27:52.468 -07 000000569 INF: Y Motor: Encoder = 134593 = motor step 105150.8 = 65.7192 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:52.468 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:52.468 -07 000000569 INF: Y Motor: Moving 1333 steps-7
17-03-17 17:27:52.468 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:52.468 -07 000000482 INF: FPGA: Recv ZDACR 38275
17-03-17 17:27:52.478 -07 000000433 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:52.478 -07 000000433 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 17:27:52.478 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:52.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:27:52.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:27:52.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:52.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:27:52.608 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:27:52.608 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:52.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:27:52.618 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:27:52.618 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:27:52.618 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:27:52.648 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:52.648 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 17:27:52.848 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 17:27:52.848 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:27:52.878 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:52.878 -07 000000551 INF: FPGA: Recv YRDPOS 136283
17-03-17 17:27:52.888 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:52.888 -07 000000569 INF: Y Motor: Encoder = 136283 = motor step 106471.1 = 66.5444 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:52.888 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:27:52.888 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.833 mm, average velocity = 2.148 mm/sec
17-03-17 17:27:53.838 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:53.838 -07 000000429 INF: FPGA: Recv YRDPOS 136283
17-03-17 17:27:53.848 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:53.848 -07 000000569 INF: Y Motor: Encoder = 136283 = motor step 106471.1 = 66.5444 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:53.858 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.008171, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:53.858 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:53.858 -07 000000569 INF: Y Motor: Moved to 66.5444 after 1429 ms (table move)
17-03-17 17:27:53.868 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175212 mm (DAC = 38275)
17-03-17 17:27:53.868 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.868 -07 000000429 INF: FPGA: Recv ZSGSRD 36567
17-03-17 17:27:53.878 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:27:53.878 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.878 -07 000000569 INF: FPGA: Recv ZSGSRD 36560
17-03-17 17:27:53.888 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.888 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.888 -07 000000541 INF: FPGA: Recv ZSGSRD 36559
17-03-17 17:27:53.898 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.898 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.898 -07 000000480 INF: FPGA: Recv ZSGSRD 36556
17-03-17 17:27:53.908 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.908 -07 000000458 INF: FPGA: Recv ZSGSRD 36560
17-03-17 17:27:53.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.918 -07 000000569 INF: FPGA: Recv ZSGSRD 36571
17-03-17 17:27:53.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.928 -07 000000541 INF: FPGA: Recv ZSGSRD 36568
17-03-17 17:27:53.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.938 -07 000000569 INF: FPGA: Recv ZSGSRD 36572
17-03-17 17:27:53.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.948 -07 000000480 INF: FPGA: Recv ZSGSRD 36564
17-03-17 17:27:53.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:53.958 -07 000000541 INF: FPGA: Recv ZSGSRD 36563
17-03-17 17:27:53.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.968 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:53.968 -07 000000458 INF: FPGA: Recv ZPIEZORD 32716
17-03-17 17:27:53.978 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:53.978 -07 000000618 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.5 V.
17-03-17 17:27:53.978 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36564 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36564 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36556 (-174.3 uncal um), Max = 36572 (-174.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:27:53.978 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36564, posNoise = 8, negNoise = 8
17-03-17 17:27:53.978 -07 000000618 INF: Z Motor: After move to -0.175212, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:53.978 -07 000000618 INF: Z Motor: Settle wait time = 1431 ms, measure time = 109 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:27:53.978 -07 000000618 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:54.028 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 17:27:54.028 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:54.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:54.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:54.028 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:54.028 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:54.028 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:54.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:54.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:54.028 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:54.038 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:27:54.038 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:54.048 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:27:54.048 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:27:54.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:54.098 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:54.298 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:54.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:54.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:54.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178668816, 0x0, 559484976) start.
17-03-17 17:27:54.338 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:54.338 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:54.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 17:27:54.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178668816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:27:54.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:54.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:27:54.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:27:54.438 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:54.438 -07 000000458 INF: Autofocus start
17-03-17 17:27:54.438 -07 000000458 INF: MeasureProfile start
17-03-17 17:27:54.438 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:54.448 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:54.448 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:54.458 -07 000000458 INF: MeasureProfile done
17-03-17 17:27:54.458 -07 000000458 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 17:27:54.458 -07 000000458 INF: Autofocus finished
17-03-17 17:27:54.648 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:54.648 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:54.648 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.54443359375, Z-position -0.175218244762483. ----------
17-03-17 17:27:54.648 -07 000000610 INF: Cycle	1	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:54.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36699, sync = True, waitForSettling = True)
17-03-17 17:27:54.658 -07 000000610 INF: Z Motor: Moving to -0.167997 mm, started at -0.175218 mm, distance = 7.22 um
17-03-17 17:27:54.658 -07 000000610 INF: FPGA: Xmit ZDACW 36699\n [Z Motor]
17-03-17 17:27:54.658 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:27:54.668 -07 000000610 INF: FPGA: 'ZDACW 36699' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:54.668 -07 000000429 INF: FPGA: Recv ZDACR 36699
17-03-17 17:27:54.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35441
17-03-17 17:27:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.838 -07 000000458 INF: FPGA: Recv ZSGSRD 35443
17-03-17 17:27:54.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.848 -07 000000618 INF: FPGA: Recv ZSGSRD 35446
17-03-17 17:27:54.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.858 -07 000000429 INF: FPGA: Recv ZSGSRD 35441
17-03-17 17:27:54.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.868 -07 000000618 INF: FPGA: Recv ZSGSRD 35444
17-03-17 17:27:54.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.878 -07 000000429 INF: FPGA: Recv ZSGSRD 35443
17-03-17 17:27:54.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.888 -07 000000480 INF: FPGA: Recv ZSGSRD 35441
17-03-17 17:27:54.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.898 -07 000000541 INF: FPGA: Recv ZSGSRD 35443
17-03-17 17:27:54.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.908 -07 000000480 INF: FPGA: Recv ZSGSRD 35441
17-03-17 17:27:54.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:54.918 -07 000000429 INF: FPGA: Recv ZSGSRD 35439
17-03-17 17:27:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:54.928 -07 000000618 INF: FPGA: Recv ZPIEZORD 31210
17-03-17 17:27:54.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:54.938 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-17 17:27:54.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35442 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35439 (-167.1 uncal um), Max = 35446 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:27:54.938 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35442, posNoise = 4, negNoise = 3
17-03-17 17:27:54.938 -07 000000610 INF: Z Motor: After move to -0.167997, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:54.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:27:54.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:54.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:54.938 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:54.938 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:54.938 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:54.938 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:54.938 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:54.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:54.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:54.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:54.938 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:27:54.938 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:54.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:54.948 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:54.948 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:27:54.948 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:54.948 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:27:54.948 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:27:54.958 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:27:54.958 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:27:54.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36876 150\n [Camera]
17-03-17 17:27:55.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:55.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:55.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:55.548 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:55.548 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:55.548 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:27:55.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:55.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:55.548 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:55.558 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:55.558 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:27:55.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36876 775
17-03-17 17:27:55.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:55.928 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:27:55.928 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:27:55.928 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:55.928 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:27:55.928 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:27:55.928 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:55.928 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:27:55.928 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:55.928 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:27:55.938 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:27:56.078 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:56.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:56.078 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:56.078 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:56.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:27:56.078 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:56.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:56.078 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:56.078 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:56.078 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:27:56.268 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:27:56.268 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:27:56.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36876 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:27:56.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:27:56.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.54443359375, Z-Position -0.168010278739427. ------
17-03-17 17:27:56.278 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:56.278 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17481 mm
17-03-17 17:27:56.278 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:27:56.278 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:27:56.278 -07 000000551 INF: Y Motor: Moving to 67.3826 mm, started at 66.5444 mm, delta = 0.8382 mm
17-03-17 17:27:56.278 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38187, sync = True, waitForSettling = False)
17-03-17 17:27:56.278 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:56.278 -07 000000618 INF: Z Motor: Moving to -0.174809 mm, started at -0.168010 mm, distance = -6.80 um
17-03-17 17:27:56.288 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:56.288 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:56.288 -07 000000482 INF: FPGA: Recv YRDPOS 136283
17-03-17 17:27:56.298 -07 000000618 INF: FPGA: Xmit ZDACW 38187\n [Z Motor]
17-03-17 17:27:56.298 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:27:56.298 -07 000000551 INF: Y Motor: Encoder = 136283 = motor step 106471.1 = 66.5444 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:56.298 -07 000000551 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:27:56.298 -07 000000551 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:27:56.298 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:27:56.308 -07 000000618 INF: FPGA: 'ZDACW 38187' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:27:56.308 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:27:56.318 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:27:56.328 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:56.328 -07 000000569 INF: FPGA: Recv ZDACR 38187
17-03-17 17:27:56.338 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:27:56.338 -07 000000618 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:27:56.458 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:27:56.458 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:27:56.458 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:56.458 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:27:56.458 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:27:56.458 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:56.468 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:27:56.468 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:27:56.468 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:27:56.468 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:27:56.498 -07 000000632 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:27:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:27:56.508 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:27:56.508 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:27:56.688 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 17:27:56.688 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:27:56.718 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:56.728 -07 000000618 INF: FPGA: Recv YRDPOS 137988
17-03-17 17:27:56.728 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:27:56.728 -07 000000551 INF: Y Motor: Encoder = 137988 = motor step 107803.1 = 67.3770 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:56.728 -07 000000551 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 17:27:56.728 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 17:27:57.408 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.313673,
17-03-17 17:27:57.678 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:27:57.678 -07 000000618 INF: FPGA: Recv YRDPOS 137988
17-03-17 17:27:57.688 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:57.688 -07 000000551 INF: Y Motor: Encoder = 137988 = motor step 107803.1 = 67.3770 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:27:57.698 -07 000000551 INF: Y Motor: After move to 67.382607, error = -0.005653, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:27:57.698 -07 000000551 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:27:57.698 -07 000000551 INF: Y Motor: Moved to 67.3770 after 1419 ms (table move)
17-03-17 17:27:57.698 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174809 mm (DAC = 38187)
17-03-17 17:27:57.698 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.708 -07 000000551 INF: FPGA: Recv ZSGSRD 36512
17-03-17 17:27:57.708 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:27:57.708 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.708 -07 000000551 INF: FPGA: Recv ZSGSRD 36502
17-03-17 17:27:57.718 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.718 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.718 -07 000000429 INF: FPGA: Recv ZSGSRD 36503
17-03-17 17:27:57.728 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.728 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.728 -07 000000429 INF: FPGA: Recv ZSGSRD 36502
17-03-17 17:27:57.738 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.738 -07 000000618 INF: FPGA: Recv ZSGSRD 36506
17-03-17 17:27:57.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.748 -07 000000632 INF: FPGA: Recv ZSGSRD 36508
17-03-17 17:27:57.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.758 -07 000000632 INF: FPGA: Recv ZSGSRD 36507
17-03-17 17:27:57.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.768 -07 000000632 INF: FPGA: Recv ZSGSRD 36502
17-03-17 17:27:57.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.778 -07 000000632 INF: FPGA: Recv ZSGSRD 36501
17-03-17 17:27:57.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:57.788 -07 000000632 INF: FPGA: Recv ZSGSRD 36497
17-03-17 17:27:57.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.798 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:57.798 -07 000000632 INF: FPGA: Recv ZPIEZORD 32599
17-03-17 17:27:57.808 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:57.808 -07 000000462 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.6 V.
17-03-17 17:27:57.808 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36504 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36502 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36497 (-173.9 uncal um), Max = 36512 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:27:57.808 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36504, posNoise = 8, negNoise = 7
17-03-17 17:27:57.808 -07 000000462 INF: Z Motor: After move to -0.174809, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:57.808 -07 000000462 INF: Z Motor: Settle wait time = 1421 ms, measure time = 103 ms (allowed 150 ms), total time = 1524 ms
17-03-17 17:27:57.808 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:27:57.858 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 17:27:57.858 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:27:57.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:57.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:57.858 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:57.858 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:57.858 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:27:57.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:57.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:57.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:27:57.868 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:57.868 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:27:57.878 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:27:57.878 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:27:57.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:27:57.928 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:27:58.128 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:27:58.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:27:58.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:27:58.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 17:27:58.158 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:27:58.168 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:27:58.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:27:58.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 17:27:58.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:58.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:27:58.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:27:58.268 -07 000000541 INF: Autofocus start
17-03-17 17:27:58.268 -07 000000541 INF: MeasureProfile start
17-03-17 17:27:58.268 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:27:58.268 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:27:58.278 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:27:58.278 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:27:58.288 -07 000000541 INF: MeasureProfile done
17-03-17 17:27:58.288 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:27:58.288 -07 000000541 INF: Autofocus finished
17-03-17 17:27:58.478 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:27:58.478 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:27:58.478 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.376953125, Z-position -0.174832792033977. ----------
17-03-17 17:27:58.478 -07 000000610 INF: Cycle	1	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:27:58.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36702, sync = True, waitForSettling = True)
17-03-17 17:27:58.488 -07 000000610 INF: Z Motor: Moving to -0.168011 mm, started at -0.174833 mm, distance = 6.82 um
17-03-17 17:27:58.488 -07 000000610 INF: FPGA: Xmit ZDACW 36702\n [Z Motor]
17-03-17 17:27:58.488 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:27:58.498 -07 000000610 INF: FPGA: 'ZDACW 36702' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:27:58.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:27:58.498 -07 000000569 INF: FPGA: Recv ZDACR 36702
17-03-17 17:27:58.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:27:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.658 -07 000000632 INF: FPGA: Recv ZSGSRD 35450
17-03-17 17:27:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:27:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.668 -07 000000569 INF: FPGA: Recv ZSGSRD 35450
17-03-17 17:27:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.678 -07 000000462 INF: FPGA: Recv ZSGSRD 35439
17-03-17 17:27:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.688 -07 000000482 INF: FPGA: Recv ZSGSRD 35444
17-03-17 17:27:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.698 -07 000000462 INF: FPGA: Recv ZSGSRD 35439
17-03-17 17:27:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.708 -07 000000541 INF: FPGA: Recv ZSGSRD 35445
17-03-17 17:27:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.718 -07 000000462 INF: FPGA: Recv ZSGSRD 35444
17-03-17 17:27:58.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.728 -07 000000458 INF: FPGA: Recv ZSGSRD 35446
17-03-17 17:27:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.738 -07 000000632 INF: FPGA: Recv ZSGSRD 35445
17-03-17 17:27:58.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:27:58.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35445
17-03-17 17:27:58.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:27:58.758 -07 000000569 INF: FPGA: Recv ZPIEZORD 31241
17-03-17 17:27:58.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:27:58.768 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-17 17:27:58.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35445 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35439 (-167.1 uncal um), Max = 35450 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:27:58.768 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 5, negNoise = 6
17-03-17 17:27:58.768 -07 000000610 INF: Z Motor: After move to -0.168011, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:27:58.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 17:27:58.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:27:58.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:27:58.768 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:27:58.768 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:27:58.768 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:27:58.768 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:27:58.768 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:27:58.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:27:58.778 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:27:58.778 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:27:58.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:27:58.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:27:58.778 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:27:58.778 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:27:58.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:27:58.778 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:27:58.788 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:27:58.788 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:27:58.788 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:27:58.788 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:27:58.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36878 150\n [Camera]
17-03-17 17:27:58.988 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:27:59.378 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:27:59.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:27:59.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:59.388 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:59.388 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 17:27:59.388 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:27:59.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:27:59.388 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:59.388 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:59.388 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:27:59.578 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36878 775
17-03-17 17:27:59.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:27:59.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:27:59.758 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:27:59.758 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:59.758 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:27:59.758 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:27:59.758 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:27:59.768 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:27:59.768 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:27:59.768 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:27:59.768 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:27:59.908 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:27:59.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:27:59.918 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:27:59.918 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:27:59.918 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 17:27:59.918 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:27:59.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:27:59.918 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:27:59.918 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:27:59.918 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 17:28:00.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:28:00.108 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:00.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36878 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-17 17:28:00.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:00.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.376953125, Z-Position -0.168029551375852. ------
17-03-17 17:28:00.108 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:00.108 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17482 mm
17-03-17 17:28:00.108 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:00.118 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:00.118 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:28:00.118 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:28:00.118 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3770 mm, delta = 0.8357 mm
17-03-17 17:28:00.118 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:00.118 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38189, sync = True, waitForSettling = False)
17-03-17 17:28:00.118 -07 000000482 INF: Z Motor: Moving to -0.174818 mm, started at -0.168030 mm, distance = -6.79 um
17-03-17 17:28:00.118 -07 000000382 INF: FPGA: Recv YRDPOS 137988
17-03-17 17:28:00.128 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:00.128 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:00.128 -07 000000541 INF: Y Motor: Encoder = 137988 = motor step 107803.1 = 67.3770 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:00.128 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:00.128 -07 000000541 INF: Y Motor: Moving 1337 steps-12
17-03-17 17:28:00.138 -07 000000482 INF: FPGA: Xmit ZDACW 38189\n [Z Motor]
17-03-17 17:28:00.138 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:28:00.148 -07 000000482 INF: FPGA: 'ZDACW 38189' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:28:00.148 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:00.158 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:00.158 -07 000000433 INF: FPGA: Recv ZDACR 38189
17-03-17 17:28:00.168 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:00.168 -07 000000482 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 17:28:00.298 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:28:00.298 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:28:00.298 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:00.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:28:00.298 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:28:00.298 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:00.298 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:00.298 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:28:00.298 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:28:00.308 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:28:00.328 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:00.328 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 17:28:00.518 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:28:00.518 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 17:28:00.548 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:00.558 -07 000000632 INF: FPGA: Recv YRDPOS 139695
17-03-17 17:28:00.568 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:00.568 -07 000000541 INF: Y Motor: Encoder = 139695 = motor step 109136.7 = 68.2104 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:00.568 -07 000000541 INF: Y Motor: Position error before settling (table move) = -4 encoder counts (-0.002 mm)
17-03-17 17:28:00.568 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 17:28:01.498 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:01.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:01.518 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:01.518 -07 000000382 INF: FPGA: Recv YRDPOS 139695
17-03-17 17:28:01.528 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:01.528 -07 000000541 INF: Y Motor: Encoder = 139695 = motor step 109136.7 = 68.2104 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:01.528 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.002159, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:01.528 -07 000000541 INF: Y Motor: Position error after settling (table move) = -4 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:01.528 -07 000000541 INF: Y Motor: Moved to 68.2104 after 1412 ms (table move)
17-03-17 17:28:01.528 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174818 mm (DAC = 38189)
17-03-17 17:28:01.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.538 -07 000000433 INF: FPGA: Recv ZSGSRD 36510
17-03-17 17:28:01.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:28:01.538 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.538 -07 000000632 INF: FPGA: Recv ZSGSRD 36512
17-03-17 17:28:01.548 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.548 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.548 -07 000000561 INF: FPGA: Recv ZSGSRD 36502
17-03-17 17:28:01.558 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.558 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.558 -07 000000569 INF: FPGA: Recv ZSGSRD 36497
17-03-17 17:28:01.568 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.568 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.568 -07 000000569 INF: FPGA: Recv ZSGSRD 36499
17-03-17 17:28:01.578 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.578 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.578 -07 000000561 INF: FPGA: Recv ZSGSRD 36500
17-03-17 17:28:01.588 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.588 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.588 -07 000000433 INF: FPGA: Recv ZSGSRD 36504
17-03-17 17:28:01.598 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.598 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.598 -07 000000462 INF: FPGA: Recv ZSGSRD 36507
17-03-17 17:28:01.608 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.608 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.608 -07 000000569 INF: FPGA: Recv ZSGSRD 36514
17-03-17 17:28:01.618 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.618 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:01.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36506
17-03-17 17:28:01.628 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.628 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:01.628 -07 000000569 INF: FPGA: Recv ZPIEZORD 32643
17-03-17 17:28:01.638 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:01.638 -07 000000458 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.827 V. Piezo Error = -8.5 V.
17-03-17 17:28:01.638 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36505 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36505 (-174.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36497 (-173.9 uncal um), Max = 36514 (-174.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:28:01.638 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36505, posNoise = 9, negNoise = 8
17-03-17 17:28:01.638 -07 000000458 INF: Z Motor: After move to -0.174818, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:01.638 -07 000000458 INF: Z Motor: Settle wait time = 1414 ms, measure time = 104 ms (allowed 150 ms), total time = 1518 ms
17-03-17 17:28:01.638 -07 000000458 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:01.688 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 17:28:01.688 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:01.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:01.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:01.688 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:01.688 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:01.688 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:01.688 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:01.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:28:01.698 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:01.698 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:01.698 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:01.708 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:28:01.708 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:28:01.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:01.758 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 17:28:01.958 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:01.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:01.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:01.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-17 17:28:01.988 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:01.988 -07 000000632 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:01.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:28:02.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:28:02.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:02.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:28:02.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:28:02.088 -07 000000433 INF: Autofocus start
17-03-17 17:28:02.088 -07 000000433 INF: MeasureProfile start
17-03-17 17:28:02.088 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:02.088 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:02.098 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:02.098 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:02.098 -07 000000433 INF: MeasureProfile done
17-03-17 17:28:02.098 -07 000000433 INF: X=-128  Z correction [um]=-0.7427131
17-03-17 17:28:02.098 -07 000000433 INF: Autofocus finished
17-03-17 17:28:02.298 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:02.298 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 17:28:02.298 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.21044921875, Z-position -0.174839216246119. ----------
17-03-17 17:28:02.308 -07 000000610 INF: Cycle	1	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:02.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36539, sync = True, waitForSettling = True)
17-03-17 17:28:02.308 -07 000000610 INF: Z Motor: Moving to -0.167265 mm, started at -0.174839 mm, distance = 7.57 um
17-03-17 17:28:02.308 -07 000000610 INF: FPGA: Xmit ZDACW 36539\n [Z Motor]
17-03-17 17:28:02.308 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:28:02.318 -07 000000610 INF: FPGA: 'ZDACW 36539' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:02.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:02.318 -07 000000433 INF: FPGA: Recv ZDACR 36539
17-03-17 17:28:02.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.478 -07 000000462 INF: FPGA: Recv ZSGSRD 35325
17-03-17 17:28:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:02.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.508 -07 000000632 INF: FPGA: Recv ZSGSRD 35326
17-03-17 17:28:02.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:02.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35324
17-03-17 17:28:02.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.538 -07 000000482 INF: FPGA: Recv ZSGSRD 35329
17-03-17 17:28:02.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:02.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.548 -07 000000561 INF: FPGA: Recv ZSGSRD 35333
17-03-17 17:28:02.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.558 -07 000000561 INF: FPGA: Recv ZSGSRD 35326
17-03-17 17:28:02.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.568 -07 000000561 INF: FPGA: Recv ZSGSRD 35328
17-03-17 17:28:02.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.578 -07 000000561 INF: FPGA: Recv ZSGSRD 35330
17-03-17 17:28:02.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.588 -07 000000482 INF: FPGA: Recv ZSGSRD 35329
17-03-17 17:28:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:02.598 -07 000000561 INF: FPGA: Recv ZSGSRD 35322
17-03-17 17:28:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:02.608 -07 000000561 INF: FPGA: Recv ZPIEZORD 31068
17-03-17 17:28:02.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:02.618 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.4 V.
17-03-17 17:28:02.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35327 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35327 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35322 (-166.4 uncal um), Max = 35333 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:02.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35327, posNoise = 6, negNoise = 5
17-03-17 17:28:02.618 -07 000000610 INF: Z Motor: After move to -0.167265, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:02.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 17:28:02.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:02.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:02.618 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:02.618 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:02.618 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:02.618 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:02.618 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:02.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:02.618 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:02.618 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:02.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:02.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:02.628 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:02.628 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:02.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:28:02.628 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:02.638 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:28:02.638 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:28:02.638 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:28:02.638 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:02.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36716 150\n [Camera]
17-03-17 17:28:02.788 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.316362,
17-03-17 17:28:02.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:03.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:03.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:03.228 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:03.228 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:03.228 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 17:28:03.228 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:03.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:03.228 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:03.228 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:03.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 17:28:03.418 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36716 775
17-03-17 17:28:03.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:03.608 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:28:03.608 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:28:03.608 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:03.608 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:03.608 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:28:03.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:28:03.608 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:28:03.608 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:03.618 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:03.618 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:28:03.758 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:03.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:03.758 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:03.758 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:03.758 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 17:28:03.758 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:03.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:03.758 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:03.758 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:03.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 17:28:03.948 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:28:03.948 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:03.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36716 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 17:28:03.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:03.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.21044921875, Z-Position -0.167271494343124. ------
17-03-17 17:28:03.958 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:03.958 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17408 mm
17-03-17 17:28:03.958 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:03.958 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:03.958 -07 000000632 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:28:03.958 -07 000000632 INF: Y Motor: Moving to 69.0426 mm, started at 68.2104 mm, delta = 0.8322 mm
17-03-17 17:28:03.958 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38027, sync = True, waitForSettling = False)
17-03-17 17:28:03.958 -07 000000382 INF: Z Motor: Moving to -0.174076 mm, started at -0.167271 mm, distance = -6.80 um
17-03-17 17:28:03.968 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:28:03.968 -07 000000382 INF: FPGA: Xmit ZDACW 38027\n [Z Motor]
17-03-17 17:28:03.968 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:28:03.978 -07 000000632 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:03.978 -07 000000382 INF: FPGA: 'ZDACW 38027' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:03.978 -07 000000561 INF: FPGA: Recv YRDPOS 139695
17-03-17 17:28:03.988 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:03.988 -07 000000632 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 17:28:03.988 -07 000000632 INF: Y Motor: Encoder = 139695 = motor step 109136.7 = 68.2104 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:03.988 -07 000000632 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:03.988 -07 000000632 INF: Y Motor: Moving 1331 steps-4
17-03-17 17:28:03.998 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:03.998 -07 000000561 INF: FPGA: Recv ZDACR 38027
17-03-17 17:28:04.008 -07 000000632 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:04.008 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:04.008 -07 000000382 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 17:28:04.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:28:04.138 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:28:04.138 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:04.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:28:04.138 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:28:04.138 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:04.148 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:04.148 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:28:04.148 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:28:04.148 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:28:04.188 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:04.188 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:28:04.378 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:28:04.378 -07 000000632 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:28:04.408 -07 000000632 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:04.408 -07 000000502 INF: FPGA: Recv YRDPOS 141378
17-03-17 17:28:04.418 -07 000000632 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:04.418 -07 000000632 INF: Y Motor: Encoder = 141378 = motor step 110451.6 = 69.0322 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:04.418 -07 000000632 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:28:04.418 -07 000000632 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.832 mm, average velocity = 2.086 mm/sec
17-03-17 17:28:05.368 -07 000000632 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:05.368 -07 000000541 INF: FPGA: Recv YRDPOS 141378
17-03-17 17:28:05.378 -07 000000632 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.378 -07 000000632 INF: Y Motor: Encoder = 141378 = motor step 110451.6 = 69.0322 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:05.398 -07 000000632 INF: Y Motor: After move to 69.042610, error = -0.010384, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:05.398 -07 000000632 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:05.398 -07 000000632 INF: Y Motor: Moved to 69.0322 after 1431 ms (table move)
17-03-17 17:28:05.398 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174076 mm (DAC = 38027)
17-03-17 17:28:05.398 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.398 -07 000000502 INF: FPGA: Recv ZSGSRD 36394
17-03-17 17:28:05.408 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:28:05.408 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36384
17-03-17 17:28:05.418 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.418 -07 000000482 INF: FPGA: Recv ZSGSRD 36390
17-03-17 17:28:05.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.428 -07 000000632 INF: FPGA: Recv ZSGSRD 36388
17-03-17 17:28:05.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:05.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.438 -07 000000482 INF: FPGA: Recv ZSGSRD 36391
17-03-17 17:28:05.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.448 -07 000000632 INF: FPGA: Recv ZSGSRD 36390
17-03-17 17:28:05.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.458 -07 000000502 INF: FPGA: Recv ZSGSRD 36386
17-03-17 17:28:05.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.468 -07 000000632 INF: FPGA: Recv ZSGSRD 36387
17-03-17 17:28:05.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.478 -07 000000561 INF: FPGA: Recv ZSGSRD 36384
17-03-17 17:28:05.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:05.488 -07 000000632 INF: FPGA: Recv ZSGSRD 36386
17-03-17 17:28:05.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.498 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:05.498 -07 000000502 INF: FPGA: Recv ZPIEZORD 32466
17-03-17 17:28:05.508 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:05.508 -07 000000462 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.803 V. Piezo Error = -8.7 V.
17-03-17 17:28:05.508 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36388 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36388 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36384 (-173.2 uncal um), Max = 36394 (-173.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:28:05.508 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36388, posNoise = 6, negNoise = 4
17-03-17 17:28:05.508 -07 000000462 INF: Z Motor: After move to -0.174076, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:05.508 -07 000000462 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:28:05.508 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:05.558 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 17:28:05.558 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:05.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:05.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:05.558 -07 000000632 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:05.558 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:05.558 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:05.558 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:05.558 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:05.568 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:05.568 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:05.568 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:05.578 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:28:05.578 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:28:05.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:05.618 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:05.818 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:05.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:05.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:05.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 17:28:05.858 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:05.858 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:05.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:28:05.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:28:05.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:05.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:28:05.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:28:05.958 -07 000000632 INF: Autofocus start
17-03-17 17:28:05.958 -07 000000632 INF: MeasureProfile start
17-03-17 17:28:05.958 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:05.958 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:05.968 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:05.968 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:05.968 -07 000000632 INF: MeasureProfile done
17-03-17 17:28:05.968 -07 000000632 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 17:28:05.968 -07 000000632 INF: Autofocus finished
17-03-17 17:28:06.168 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:06.168 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:06.168 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0322265625, Z-position -0.174087583425533. ----------
17-03-17 17:28:06.168 -07 000000610 INF: Cycle	1	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:06.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36470, sync = True, waitForSettling = True)
17-03-17 17:28:06.178 -07 000000610 INF: Z Motor: Moving to -0.166949 mm, started at -0.174088 mm, distance = 7.14 um
17-03-17 17:28:06.178 -07 000000610 INF: FPGA: Xmit ZDACW 36470\n [Z Motor]
17-03-17 17:28:06.178 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:28:06.188 -07 000000610 INF: FPGA: 'ZDACW 36470' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:06.188 -07 000000462 INF: FPGA: Recv ZDACR 36470
17-03-17 17:28:06.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:06.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.348 -07 000000482 INF: FPGA: Recv ZSGSRD 35275
17-03-17 17:28:06.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35279
17-03-17 17:28:06.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.368 -07 000000382 INF: FPGA: Recv ZSGSRD 35280
17-03-17 17:28:06.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.378 -07 000000632 INF: FPGA: Recv ZSGSRD 35275
17-03-17 17:28:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.388 -07 000000541 INF: FPGA: Recv ZSGSRD 35280
17-03-17 17:28:06.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.398 -07 000000632 INF: FPGA: Recv ZSGSRD 35282
17-03-17 17:28:06.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:06.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35283
17-03-17 17:28:06.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.418 -07 000000462 INF: FPGA: Recv ZSGSRD 35282
17-03-17 17:28:06.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.428 -07 000000502 INF: FPGA: Recv ZSGSRD 35275
17-03-17 17:28:06.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:06.438 -07 000000382 INF: FPGA: Recv ZSGSRD 35280
17-03-17 17:28:06.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:06.448 -07 000000482 INF: FPGA: Recv ZPIEZORD 31020
17-03-17 17:28:06.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:06.458 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.4 V.
17-03-17 17:28:06.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35279 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35275 (-166.1 uncal um), Max = 35283 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:28:06.458 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35279, posNoise = 4, negNoise = 4
17-03-17 17:28:06.458 -07 000000610 INF: Z Motor: After move to -0.166949, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:06.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:28:06.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:06.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:06.458 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:06.458 -07 000000632 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:06.458 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:06.458 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:06.458 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:06.458 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:06.458 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:28:06.458 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:06.458 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:06.458 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:06.468 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:06.468 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:06.468 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:28:06.468 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:06.468 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:28:06.468 -07 000000632 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:06.468 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:28:06.478 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:06.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36646 150\n [Camera]
17-03-17 17:28:06.498 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:06.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:06.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:07.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:07.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:07.068 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:07.068 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:07.068 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 17:28:07.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:07.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:07.068 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:07.068 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:07.068 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 17:28:07.258 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36646 775
17-03-17 17:28:07.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:07.448 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:28:07.448 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:28:07.448 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:07.448 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:28:07.448 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:28:07.448 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:07.448 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:07.448 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:28:07.448 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:07.458 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:28:07.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 17:28:07.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 17:28:07.608 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:07.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 17:28:07.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 17:28:07.758 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:07.768 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:07.768 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:28:07.778 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:07.778 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:28:07.788 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:07.788 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:07.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36646 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:28:07.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:07.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0322265625, Z-Position -0.16696313216032. ------
17-03-17 17:28:07.798 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17376 mm
17-03-17 17:28:07.798 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:07.798 -07 000000632 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:07.798 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:28:07.798 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0322 mm, delta = 0.8404 mm
17-03-17 17:28:07.798 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37957, sync = True, waitForSettling = False)
17-03-17 17:28:07.798 -07 000000438 INF: Z Motor: Moving to -0.173756 mm, started at -0.166963 mm, distance = -6.79 um
17-03-17 17:28:07.798 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:07.808 -07 000000632 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:07.808 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:07.808 -07 000000429 INF: FPGA: Recv YRDPOS 141378
17-03-17 17:28:07.818 -07 000000438 INF: FPGA: Xmit ZDACW 37957\n [Z Motor]
17-03-17 17:28:07.818 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:28:07.818 -07 000000561 INF: Y Motor: Encoder = 141378 = motor step 110451.6 = 69.0322 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:07.818 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:07.818 -07 000000561 INF: Y Motor: Moving 1345 steps-21
17-03-17 17:28:07.818 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:28:07.828 -07 000000632 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:07.828 -07 000000438 INF: FPGA: 'ZDACW 37957' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:28:07.838 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:07.858 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:07.858 -07 000000382 INF: FPGA: Recv ZDACR 37957
17-03-17 17:28:07.868 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:28:07.868 -07 000000438 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-17 17:28:08.028 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:08.028 -07 000000632 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:28:08.148 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:28:08.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:28:08.148 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:28:08.148 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:08.148 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:28:08.148 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:08.158 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:08.158 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 549 ms.
17-03-17 17:28:08.158 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:08.158 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:28:08.188 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.296108,
17-03-17 17:28:08.208 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:28:08.208 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:28:08.248 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:08.248 -07 000000551 INF: FPGA: Recv YRDPOS 143091
17-03-17 17:28:08.258 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:08.258 -07 000000561 INF: Y Motor: Encoder = 143091 = motor step 111789.8 = 69.8687 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:08.258 -07 000000561 INF: Y Motor: Position error before settling (table move) = -8 encoder counts (-0.004 mm)
17-03-17 17:28:08.258 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.117 mm/sec
17-03-17 17:28:09.208 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:09.208 -07 000000632 INF: FPGA: Recv YRDPOS 143091
17-03-17 17:28:09.218 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:09.218 -07 000000561 INF: Y Motor: Encoder = 143091 = motor step 111789.8 = 69.8687 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:09.218 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.003960, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:09.218 -07 000000561 INF: Y Motor: Position error after settling (table move) = -8 encoder counts (-0.004 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:09.218 -07 000000561 INF: Y Motor: Moved to 69.8687 after 1422 ms (table move)
17-03-17 17:28:09.228 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173756 mm (DAC = 37957)
17-03-17 17:28:09.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.228 -07 000000632 INF: FPGA: Recv ZSGSRD 36333
17-03-17 17:28:09.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:09.238 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36332
17-03-17 17:28:09.248 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.248 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.248 -07 000000382 INF: FPGA: Recv ZSGSRD 36347
17-03-17 17:28:09.258 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:09.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.258 -07 000000541 INF: FPGA: Recv ZSGSRD 36330
17-03-17 17:28:09.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.268 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36336
17-03-17 17:28:09.278 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.278 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.278 -07 000000561 INF: FPGA: Recv ZSGSRD 36345
17-03-17 17:28:09.288 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.288 -07 000000541 INF: FPGA: Recv ZSGSRD 36340
17-03-17 17:28:09.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.298 -07 000000551 INF: FPGA: Recv ZSGSRD 36330
17-03-17 17:28:09.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.308 -07 000000561 INF: FPGA: Recv ZSGSRD 36337
17-03-17 17:28:09.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:09.318 -07 000000551 INF: FPGA: Recv ZSGSRD 36336
17-03-17 17:28:09.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.328 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:09.328 -07 000000618 INF: FPGA: Recv ZPIEZORD 32432
17-03-17 17:28:09.338 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:09.338 -07 000000502 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.6 V.
17-03-17 17:28:09.338 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36337 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36336 (-172.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36330 (-172.8 uncal um), Max = 36347 (-172.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:28:09.338 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36337, posNoise = 10, negNoise = 7
17-03-17 17:28:09.338 -07 000000502 INF: Z Motor: After move to -0.173756, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:09.338 -07 000000502 INF: Z Motor: Settle wait time = 1426 ms, measure time = 109 ms (allowed 150 ms), total time = 1535 ms
17-03-17 17:28:09.338 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:09.388 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 17:28:09.388 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:09.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:09.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:09.388 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:09.388 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:09.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:09.388 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:09.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:28:09.388 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:09.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:09.398 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:09.398 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:28:09.398 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:28:09.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:09.448 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:09.648 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:09.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:09.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:09.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 17:28:09.688 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:09.688 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:09.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:28:09.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:28:09.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:09.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:09.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 17:28:09.898 -07 000000541 INF: Autofocus start
17-03-17 17:28:09.898 -07 000000541 INF: MeasureProfile start
17-03-17 17:28:09.898 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:09.898 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:09.908 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:09.908 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:09.908 -07 000000541 INF: MeasureProfile done
17-03-17 17:28:09.908 -07 000000541 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 17:28:09.908 -07 000000541 INF: Autofocus finished
17-03-17 17:28:10.108 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:10.108 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:10.108 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86865234375, Z-position -0.173759948606303. ----------
17-03-17 17:28:10.108 -07 000000610 INF: Cycle	1	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:10.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36381, sync = True, waitForSettling = True)
17-03-17 17:28:10.118 -07 000000610 INF: Z Motor: Moving to -0.166542 mm, started at -0.173760 mm, distance = 7.22 um
17-03-17 17:28:10.118 -07 000000610 INF: FPGA: Xmit ZDACW 36381\n [Z Motor]
17-03-17 17:28:10.118 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:28:10.128 -07 000000610 INF: FPGA: 'ZDACW 36381' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:10.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:10.128 -07 000000618 INF: FPGA: Recv ZDACR 36381
17-03-17 17:28:10.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:10.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.288 -07 000000561 INF: FPGA: Recv ZSGSRD 35218
17-03-17 17:28:10.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:10.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.298 -07 000000438 INF: FPGA: Recv ZSGSRD 35211
17-03-17 17:28:10.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35220
17-03-17 17:28:10.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.318 -07 000000618 INF: FPGA: Recv ZSGSRD 35210
17-03-17 17:28:10.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.328 -07 000000502 INF: FPGA: Recv ZSGSRD 35218
17-03-17 17:28:10.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.338 -07 000000438 INF: FPGA: Recv ZSGSRD 35211
17-03-17 17:28:10.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.348 -07 000000382 INF: FPGA: Recv ZSGSRD 35215
17-03-17 17:28:10.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.358 -07 000000561 INF: FPGA: Recv ZSGSRD 35213
17-03-17 17:28:10.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.368 -07 000000618 INF: FPGA: Recv ZSGSRD 35212
17-03-17 17:28:10.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:10.378 -07 000000551 INF: FPGA: Recv ZSGSRD 35219
17-03-17 17:28:10.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:10.388 -07 000000438 INF: FPGA: Recv ZPIEZORD 30923
17-03-17 17:28:10.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:10.398 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.5 V.
17-03-17 17:28:10.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35215 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35214 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35210 (-165.7 uncal um), Max = 35220 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:10.398 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35215, posNoise = 5, negNoise = 5
17-03-17 17:28:10.398 -07 000000610 INF: Z Motor: After move to -0.166542, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:10.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:28:10.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:10.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:10.398 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:10.398 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:10.398 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:10.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:10.398 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:10.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:10.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:10.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:10.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:10.398 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:10.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:10.408 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:10.408 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:28:10.408 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:10.418 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:28:10.418 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:28:10.418 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:28:10.418 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:10.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36558 150\n [Camera]
17-03-17 17:28:10.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:11.008 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:11.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:11.008 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:11.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:11.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:11.008 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:11.008 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:11.008 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:28:11.018 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:11.018 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:28:11.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36558 778
17-03-17 17:28:11.348 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:11.388 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:28:11.388 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:28:11.388 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:11.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:28:11.388 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:28:11.388 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:11.388 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:11.398 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:28:11.398 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:28:11.398 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:28:11.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:11.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:11.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:11.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:11.538 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:11.538 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:11.538 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) start.
17-03-17 17:28:11.538 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:11.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:11.538 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:11.538 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:11.538 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055526960, 0x0, 418435064) start.
17-03-17 17:28:11.728 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:11.728 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:11.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36558 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:28:11.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:11.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86865234375, Z-Position -0.166551982583247. ------
17-03-17 17:28:11.738 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:11.738 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17335 mm
17-03-17 17:28:11.738 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:11.738 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:28:11.738 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8687 mm, delta = 0.8340 mm
17-03-17 17:28:11.738 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37869, sync = True, waitForSettling = False)
17-03-17 17:28:11.738 -07 000000551 INF: Z Motor: Moving to -0.173353 mm, started at -0.166552 mm, distance = -6.80 um
17-03-17 17:28:11.738 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:11.748 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:11.748 -07 000000551 INF: FPGA: Xmit ZDACW 37869\n [Z Motor]
17-03-17 17:28:11.748 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:28:11.758 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:11.758 -07 000000551 INF: FPGA: 'ZDACW 37869' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:28:11.758 -07 000000458 INF: FPGA: Recv YRDPOS 143092
17-03-17 17:28:11.768 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:28:11.768 -07 000000382 INF: Y Motor: Encoder = 143092 = motor step 111790.6 = 69.8691 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:11.768 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:11.768 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:11.768 -07 000000382 INF: Y Motor: Moving 1334 steps-8
17-03-17 17:28:11.778 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:11.778 -07 000000431 INF: FPGA: Recv ZDACR 37869
17-03-17 17:28:11.788 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:11.788 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:11.788 -07 000000551 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:28:11.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 17:28:11.928 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:28:11.928 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:11.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055526960, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:28:11.928 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:28:11.928 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:11.928 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:11.928 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:28:11.928 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:11.938 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:28:11.968 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:11.968 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 17:28:12.158 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:28:12.158 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 17:28:12.188 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:12.188 -07 000000551 INF: FPGA: Recv YRDPOS 144780
17-03-17 17:28:12.198 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:12.198 -07 000000382 INF: Y Motor: Encoder = 144780 = motor step 113109.4 = 70.6934 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:12.198 -07 000000382 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:28:12.198 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.834 mm, average velocity = 2.122 mm/sec
17-03-17 17:28:13.148 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:13.148 -07 000000632 INF: FPGA: Recv YRDPOS 144780
17-03-17 17:28:13.158 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:13.158 -07 000000382 INF: Y Motor: Encoder = 144780 = motor step 113109.4 = 70.6934 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:13.168 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.009247, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:13.168 -07 000000382 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:13.168 -07 000000382 INF: Y Motor: Moved to 70.6934 after 1435 ms (table move)
17-03-17 17:28:13.178 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173353 mm (DAC = 37869)
17-03-17 17:28:13.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.178 -07 000000382 INF: FPGA: Recv ZSGSRD 36277
17-03-17 17:28:13.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:13.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.188 -07 000000502 INF: FPGA: Recv ZSGSRD 36279
17-03-17 17:28:13.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:13.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.198 -07 000000569 INF: FPGA: Recv ZSGSRD 36278
17-03-17 17:28:13.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:13.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.208 -07 000000569 INF: FPGA: Recv ZSGSRD 36282
17-03-17 17:28:13.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:13.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.218 -07 000000569 INF: FPGA: Recv ZSGSRD 36279
17-03-17 17:28:13.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:13.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.258 -07 000000551 INF: FPGA: Recv ZSGSRD 36278
17-03-17 17:28:13.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:28:13.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.288 -07 000000502 INF: FPGA: Recv ZSGSRD 36280
17-03-17 17:28:13.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:13.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.298 -07 000000569 INF: FPGA: Recv ZSGSRD 36277
17-03-17 17:28:13.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:13.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36272
17-03-17 17:28:13.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:13.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:13.328 -07 000000551 INF: FPGA: Recv ZSGSRD 36271
17-03-17 17:28:13.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:13.338 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:13.338 -07 000000551 INF: FPGA: Recv ZPIEZORD 32354
17-03-17 17:28:13.348 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:13.348 -07 000000541 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.7 V.
17-03-17 17:28:13.348 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36277 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36278 (-172.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36271 (-172.5 uncal um), Max = 36282 (-172.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:28:13.348 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36277, posNoise = 5, negNoise = 6
17-03-17 17:28:13.348 -07 000000541 INF: Z Motor: After move to -0.173353, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:13.348 -07 000000541 INF: Z Motor: Settle wait time = 1438 ms, measure time = 168 ms (allowed 150 ms), total time = 1606 ms
17-03-17 17:28:13.348 -07 000000541 INF: Z Motor: Warning: Actual position measuring time = 168 ms, longer than max expected time of 150 ms
17-03-17 17:28:13.348 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 17:28:13.348 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:13.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:13.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:13.348 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:13.348 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:13.348 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:13.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:13.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:28:13.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:13.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:13.358 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:13.358 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:28:13.358 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:28:13.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:13.408 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:13.568 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.29747,
17-03-17 17:28:13.608 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:13.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:13.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:13.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 17:28:13.648 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:13.648 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:13.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:28:13.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:28:13.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:13.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:13.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:28:13.848 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:13.848 -07 000000438 INF: Autofocus start
17-03-17 17:28:13.848 -07 000000438 INF: MeasureProfile start
17-03-17 17:28:13.848 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:13.858 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:13.858 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:13.858 -07 000000438 INF: MeasureProfile done
17-03-17 17:28:13.858 -07 000000438 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 17:28:13.858 -07 000000438 INF: Autofocus finished
17-03-17 17:28:14.058 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:14.058 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:14.058 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.693359375, Z-position -0.173374495877797. ----------
17-03-17 17:28:14.058 -07 000000610 INF: Cycle	1	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:14.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36312, sync = True, waitForSettling = True)
17-03-17 17:28:14.068 -07 000000610 INF: Z Motor: Moving to -0.166226 mm, started at -0.173374 mm, distance = 7.15 um
17-03-17 17:28:14.068 -07 000000610 INF: FPGA: Xmit ZDACW 36312\n [Z Motor]
17-03-17 17:28:14.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:28:14.078 -07 000000610 INF: FPGA: 'ZDACW 36312' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:14.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:14.078 -07 000000438 INF: FPGA: Recv ZDACR 36312
17-03-17 17:28:14.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35167
17-03-17 17:28:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.248 -07 000000502 INF: FPGA: Recv ZSGSRD 35167
17-03-17 17:28:14.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.258 -07 000000438 INF: FPGA: Recv ZSGSRD 35164
17-03-17 17:28:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.268 -07 000000618 INF: FPGA: Recv ZSGSRD 35169
17-03-17 17:28:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.278 -07 000000502 INF: FPGA: Recv ZSGSRD 35165
17-03-17 17:28:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35171
17-03-17 17:28:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35168
17-03-17 17:28:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.308 -07 000000502 INF: FPGA: Recv ZSGSRD 35165
17-03-17 17:28:14.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.318 -07 000000438 INF: FPGA: Recv ZSGSRD 35168
17-03-17 17:28:14.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:14.328 -07 000000382 INF: FPGA: Recv ZSGSRD 35161
17-03-17 17:28:14.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:14.338 -07 000000438 INF: FPGA: Recv ZPIEZORD 30862
17-03-17 17:28:14.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:14.348 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.5 V.
17-03-17 17:28:14.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35166 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35167 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35161 (-165.3 uncal um), Max = 35171 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:14.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35166, posNoise = 5, negNoise = 5
17-03-17 17:28:14.348 -07 000000610 INF: Z Motor: After move to -0.166226, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:14.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:28:14.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:14.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:14.348 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:14.348 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:14.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:14.348 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:14.348 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:14.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:14.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:14.348 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:14.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:28:14.348 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:14.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:14.358 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:14.358 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:28:14.358 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:14.368 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:28:14.368 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:28:14.368 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:28:14.368 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:14.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36488 150\n [Camera]
17-03-17 17:28:14.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:14.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 17:28:14.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 17:28:14.958 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:14.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:14.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) start.
17-03-17 17:28:14.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 17:28:14.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 17:28:14.958 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:14.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:14.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1126371488, 0x0, 418435064) start.
17-03-17 17:28:15.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36488 775
17-03-17 17:28:15.298 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 17:28:15.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1126371488, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:28:15.338 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:28:15.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:15.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:28:15.338 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:28:15.338 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:15.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:15.338 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:15.338 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:28:15.348 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:28:15.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:15.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:15.488 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:15.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:15.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:28:15.488 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:15.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:15.488 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:15.488 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:15.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:28:15.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:15.678 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:15.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36488 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:28:15.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:15.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.693359375, Z-Position -0.166237196188301. ------
17-03-17 17:28:15.688 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:15.688 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17303 mm
17-03-17 17:28:15.688 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:15.688 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:15.688 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:28:15.688 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6934 mm, delta = 0.8392 mm
17-03-17 17:28:15.688 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37799, sync = True, waitForSettling = False)
17-03-17 17:28:15.688 -07 000000431 INF: Z Motor: Moving to -0.173033 mm, started at -0.166237 mm, distance = -6.80 um
17-03-17 17:28:15.698 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:15.698 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:15.698 -07 000000502 INF: FPGA: Recv YRDPOS 144780
17-03-17 17:28:15.808 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 17:28:15.808 -07 000000561 INF: Y Motor: Encoder = 144780 = motor step 113109.4 = 70.6934 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:15.808 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:15.808 -07 000000561 INF: Y Motor: Moving 1343 steps-19
17-03-17 17:28:15.808 -07 000000431 INF: FPGA: Xmit ZDACW 37799\n [Z Motor]
17-03-17 17:28:15.818 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:15.818 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:28:15.818 -07 000000431 INF: FPGA: 'ZDACW 37799' command took 1 ms to send, 1 ms to get response, and 127 ms overall
17-03-17 17:28:15.828 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:15.828 -07 000000502 INF: FPGA: Recv ZDACR 37799
17-03-17 17:28:15.838 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:15.838 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:28:15.838 -07 000000431 INF: Z Motor: MoveAbsStepped took 146 ms (did NOT wait for settling yet))
17-03-17 17:28:15.868 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:28:15.868 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:28:15.868 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:15.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:28:15.878 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:28:15.878 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:15.878 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:15.878 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:28:15.878 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:28:15.878 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:28:16.018 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:16.018 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 322 ms overall
17-03-17 17:28:16.208 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:28:16.208 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-17 17:28:16.238 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:16.248 -07 000000382 INF: FPGA: Recv YRDPOS 146482
17-03-17 17:28:16.258 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:16.258 -07 000000561 INF: Y Motor: Encoder = 146482 = motor step 114439.1 = 71.5244 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:16.258 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:28:16.258 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.103 mm/sec
17-03-17 17:28:16.498 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:16.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:17.208 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:17.208 -07 000000502 INF: FPGA: Recv YRDPOS 146482
17-03-17 17:28:17.218 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:17.218 -07 000000561 INF: Y Motor: Encoder = 146482 = motor step 114439.1 = 71.5244 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:17.228 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.008194, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:17.228 -07 000000561 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:17.228 -07 000000561 INF: Y Motor: Moved to 71.5244 after 1544 ms (table move)
17-03-17 17:28:17.238 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173033 mm (DAC = 37799)
17-03-17 17:28:17.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.238 -07 000000618 INF: FPGA: Recv ZSGSRD 36223
17-03-17 17:28:17.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:17.248 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.248 -07 000000561 INF: FPGA: Recv ZSGSRD 36227
17-03-17 17:28:17.258 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.258 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.258 -07 000000618 INF: FPGA: Recv ZSGSRD 36231
17-03-17 17:28:17.268 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.268 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.268 -07 000000561 INF: FPGA: Recv ZSGSRD 36222
17-03-17 17:28:17.278 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.278 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.278 -07 000000618 INF: FPGA: Recv ZSGSRD 36219
17-03-17 17:28:17.288 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.288 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.288 -07 000000382 INF: FPGA: Recv ZSGSRD 36231
17-03-17 17:28:17.298 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.298 -07 000000618 INF: FPGA: Recv ZSGSRD 36229
17-03-17 17:28:17.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36227
17-03-17 17:28:17.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:17.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.318 -07 000000431 INF: FPGA: Recv ZSGSRD 36232
17-03-17 17:28:17.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.328 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:17.328 -07 000000382 INF: FPGA: Recv ZSGSRD 36225
17-03-17 17:28:17.338 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.338 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:17.338 -07 000000438 INF: FPGA: Recv ZPIEZORD 32318
17-03-17 17:28:17.348 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:17.348 -07 000000551 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.6 V.
17-03-17 17:28:17.348 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36227 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36227 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36219 (-172.1 uncal um), Max = 36232 (-172.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:28:17.348 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36227, posNoise = 5, negNoise = 8
17-03-17 17:28:17.348 -07 000000551 INF: Z Motor: After move to -0.173033, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:17.348 -07 000000551 INF: Z Motor: Settle wait time = 1547 ms, measure time = 109 ms (allowed 150 ms), total time = 1656 ms
17-03-17 17:28:17.348 -07 000000551 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:17.398 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1708 ms
17-03-17 17:28:17.398 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:17.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:17.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:17.398 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:17.398 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:17.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:17.398 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:17.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:28:17.398 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:17.408 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:17.408 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:17.408 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:28:17.418 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:28:17.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:17.458 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:17.658 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:17.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:17.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:17.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:28:17.698 -07 000000438 INF: FPGA: Recv @CAMSNAP 281
17-03-17 17:28:17.698 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:17.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 17:28:17.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 17:28:17.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:17.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:17.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 17:28:17.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:17.798 -07 000000382 INF: Autofocus start
17-03-17 17:28:17.798 -07 000000382 INF: MeasureProfile start
17-03-17 17:28:17.798 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:17.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:17.808 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:17.808 -07 000000382 INF: MeasureProfile done
17-03-17 17:28:17.808 -07 000000382 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:28:17.808 -07 000000382 INF: Autofocus finished
17-03-17 17:28:18.008 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:18.008 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:28:18.008 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5244140625, Z-position -0.173053285270709. ----------
17-03-17 17:28:18.008 -07 000000610 INF: Cycle	1	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:18.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36279, sync = True, waitForSettling = True)
17-03-17 17:28:18.018 -07 000000610 INF: Z Motor: Moving to -0.166075 mm, started at -0.173053 mm, distance = 6.98 um
17-03-17 17:28:18.018 -07 000000610 INF: FPGA: Xmit ZDACW 36279\n [Z Motor]
17-03-17 17:28:18.018 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:28:18.028 -07 000000610 INF: FPGA: 'ZDACW 36279' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:18.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:18.028 -07 000000429 INF: FPGA: Recv ZDACR 36279
17-03-17 17:28:18.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:18.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35141
17-03-17 17:28:18.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35139
17-03-17 17:28:18.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.208 -07 000000382 INF: FPGA: Recv ZSGSRD 35141
17-03-17 17:28:18.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35142
17-03-17 17:28:18.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.228 -07 000000429 INF: FPGA: Recv ZSGSRD 35139
17-03-17 17:28:18.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35145
17-03-17 17:28:18.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35147
17-03-17 17:28:18.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.258 -07 000000502 INF: FPGA: Recv ZSGSRD 35147
17-03-17 17:28:18.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.268 -07 000000429 INF: FPGA: Recv ZSGSRD 35137
17-03-17 17:28:18.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:18.278 -07 000000551 INF: FPGA: Recv ZSGSRD 35140
17-03-17 17:28:18.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:18.288 -07 000000561 INF: FPGA: Recv ZPIEZORD 30873
17-03-17 17:28:18.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:18.298 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.536 V. Piezo Error = -9.4 V.
17-03-17 17:28:18.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35142 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35141 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35137 (-165.2 uncal um), Max = 35147 (-165.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:18.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35142, posNoise = 5, negNoise = 5
17-03-17 17:28:18.298 -07 000000610 INF: Z Motor: After move to -0.166075, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:18.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:28:18.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:18.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:18.298 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:18.298 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:18.298 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:18.298 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:18.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:18.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:18.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:18.298 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:18.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:18.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:18.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:18.308 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:28:18.308 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:18.308 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:18.318 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 17:28:18.318 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:28:18.318 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 17:28:18.318 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:28:18.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36456 150\n [Camera]
17-03-17 17:28:18.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:18.918 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:18.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:18.918 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:18.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:18.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:18.918 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:18.918 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:18.918 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:28:18.918 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:18.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:28:18.948 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.262311,
17-03-17 17:28:19.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36456 775
17-03-17 17:28:19.258 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 17:28:19.298 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:28:19.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:28:19.308 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:28:19.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:19.308 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:28:19.308 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:19.308 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:28:19.308 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:28:19.308 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:28:19.318 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:28:19.448 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:19.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:19.448 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:19.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:19.448 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:19.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:19.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:19.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:28:19.458 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:19.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 17:28:19.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:28:19.638 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:19.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36456 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 17:28:19.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:19.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5244140625, Z-Position -0.166083015096899. ------
17-03-17 17:28:19.638 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:19.648 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17288 mm
17-03-17 17:28:19.648 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:19.648 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:19.648 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:28:19.648 -07 000000480 INF: Y Motor: Moving to 72.3626 mm, started at 71.5244 mm, delta = 0.8382 mm
17-03-17 17:28:19.648 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37766, sync = True, waitForSettling = False)
17-03-17 17:28:19.648 -07 000000502 INF: Z Motor: Moving to -0.172882 mm, started at -0.166083 mm, distance = -6.80 um
17-03-17 17:28:19.658 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:19.658 -07 000000502 INF: FPGA: Xmit ZDACW 37766\n [Z Motor]
17-03-17 17:28:19.658 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:28:19.668 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:19.668 -07 000000502 INF: FPGA: 'ZDACW 37766' command took 2 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:28:19.668 -07 000000431 INF: FPGA: Recv YRDPOS 146482
17-03-17 17:28:19.678 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:19.678 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:28:19.678 -07 000000480 INF: Y Motor: Encoder = 146482 = motor step 114439.1 = 71.5244 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:19.678 -07 000000480 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:19.678 -07 000000480 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:28:19.688 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:19.688 -07 000000618 INF: FPGA: Recv ZDACR 37766
17-03-17 17:28:19.698 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:19.698 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:19.698 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:28:19.828 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:28:19.828 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:28:19.828 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:19.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:28:19.828 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:19.828 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:28:19.828 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:19.838 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:19.838 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:28:19.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:28:19.878 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:19.878 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 17:28:20.068 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 17:28:20.068 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:28:20.098 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:20.108 -07 000000632 INF: FPGA: Recv YRDPOS 148181
17-03-17 17:28:20.108 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:28:20.108 -07 000000480 INF: Y Motor: Encoder = 148181 = motor step 115766.4 = 72.3540 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:20.108 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:28:20.108 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 17:28:21.058 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:21.058 -07 000000561 INF: FPGA: Recv YRDPOS 148181
17-03-17 17:28:21.068 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:21.068 -07 000000480 INF: Y Motor: Encoder = 148181 = motor step 115766.4 = 72.3540 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:21.078 -07 000000480 INF: Y Motor: After move to 72.362610, error = -0.008606, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:21.078 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:21.078 -07 000000480 INF: Y Motor: Moved to 72.3540 after 1436 ms (table move)
17-03-17 17:28:21.088 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172882 mm (DAC = 37766)
17-03-17 17:28:21.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.088 -07 000000632 INF: FPGA: Recv ZSGSRD 36207
17-03-17 17:28:21.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:21.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.098 -07 000000480 INF: FPGA: Recv ZSGSRD 36204
17-03-17 17:28:21.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36205
17-03-17 17:28:21.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.118 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.118 -07 000000429 INF: FPGA: Recv ZSGSRD 36206
17-03-17 17:28:21.128 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.128 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.128 -07 000000632 INF: FPGA: Recv ZSGSRD 36205
17-03-17 17:28:21.138 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36196
17-03-17 17:28:21.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.148 -07 000000429 INF: FPGA: Recv ZSGSRD 36195
17-03-17 17:28:21.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.158 -07 000000482 INF: FPGA: Recv ZSGSRD 36205
17-03-17 17:28:21.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.168 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.168 -07 000000429 INF: FPGA: Recv ZSGSRD 36206
17-03-17 17:28:21.178 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.178 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:21.178 -07 000000632 INF: FPGA: Recv ZSGSRD 36197
17-03-17 17:28:21.188 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:21.188 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:21.188 -07 000000561 INF: FPGA: Recv ZPIEZORD 32255
17-03-17 17:28:21.198 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.198 -07 000000462 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.7 V.
17-03-17 17:28:21.198 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36203 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36205 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36195 (-172.0 uncal um), Max = 36207 (-172.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:28:21.198 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36203, posNoise = 4, negNoise = 8
17-03-17 17:28:21.198 -07 000000462 INF: Z Motor: After move to -0.172882, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:21.198 -07 000000462 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:28:21.198 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:21.248 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 17:28:21.248 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:21.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:21.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:21.248 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:21.248 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:21.248 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:21.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:21.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:21.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:21.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:21.258 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:21.268 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:28:21.268 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:28:21.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:21.318 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:21.508 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:21.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:21.518 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:21.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:21.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:21.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-17 17:28:21.548 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:21.558 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:21.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:28:21.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 17:28:21.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:21.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:28:21.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 17:28:21.658 -07 000000462 INF: Autofocus start
17-03-17 17:28:21.658 -07 000000462 INF: MeasureProfile start
17-03-17 17:28:21.658 -07 000000632 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:21.658 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:21.668 -07 000000632 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:21.668 -07 000000632 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:21.668 -07 000000462 INF: MeasureProfile done
17-03-17 17:28:21.668 -07 000000462 INF: X=-112  Z correction [um]=-0.6579942
17-03-17 17:28:21.668 -07 000000462 INF: Autofocus finished
17-03-17 17:28:21.868 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:21.868 -07 000000632 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:28:21.868 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35400390625, Z-position -0.172899104179307. ----------
17-03-17 17:28:21.868 -07 000000610 INF: Cycle	1	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:21.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36135, sync = True, waitForSettling = True)
17-03-17 17:28:21.878 -07 000000610 INF: Z Motor: Moving to -0.165415 mm, started at -0.172899 mm, distance = 7.48 um
17-03-17 17:28:21.878 -07 000000610 INF: FPGA: Xmit ZDACW 36135\n [Z Motor]
17-03-17 17:28:21.878 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:28:21.888 -07 000000610 INF: FPGA: 'ZDACW 36135' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:21.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:21.888 -07 000000429 INF: FPGA: Recv ZDACR 36135
17-03-17 17:28:21.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:21.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:22.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.048 -07 000000429 INF: FPGA: Recv ZSGSRD 35045
17-03-17 17:28:22.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:22.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.058 -07 000000462 INF: FPGA: Recv ZSGSRD 35037
17-03-17 17:28:22.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.068 -07 000000429 INF: FPGA: Recv ZSGSRD 35037
17-03-17 17:28:22.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.078 -07 000000462 INF: FPGA: Recv ZSGSRD 35038
17-03-17 17:28:22.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.088 -07 000000429 INF: FPGA: Recv ZSGSRD 35046
17-03-17 17:28:22.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.098 -07 000000632 INF: FPGA: Recv ZSGSRD 35039
17-03-17 17:28:22.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.108 -07 000000429 INF: FPGA: Recv ZSGSRD 35040
17-03-17 17:28:22.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.118 -07 000000561 INF: FPGA: Recv ZSGSRD 35047
17-03-17 17:28:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.128 -07 000000429 INF: FPGA: Recv ZSGSRD 35045
17-03-17 17:28:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:22.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35039
17-03-17 17:28:22.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:22.148 -07 000000429 INF: FPGA: Recv ZPIEZORD 30743
17-03-17 17:28:22.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:22.158 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.514 V. Piezo Error = -9.5 V.
17-03-17 17:28:22.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35041 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35040 (-164.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35037 (-164.5 uncal um), Max = 35047 (-164.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:28:22.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35041, posNoise = 6, negNoise = 4
17-03-17 17:28:22.158 -07 000000610 INF: Z Motor: After move to -0.165415, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:22.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:28:22.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:22.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:22.158 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:22.158 -07 000000632 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:22.158 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:22.158 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:22.158 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:22.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:22.158 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:22.158 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:22.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:22.158 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:22.158 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:22.168 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:28:22.168 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:22.168 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:22.178 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:28:22.178 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:28:22.178 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:28:22.178 -07 000000632 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:28:22.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36312 150\n [Camera]
17-03-17 17:28:22.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:22.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:22.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:22.768 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:22.768 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:22.768 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055526960, 0x0, 391868352) start.
17-03-17 17:28:22.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:22.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:22.768 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:22.888 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:22.888 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:28:22.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36312 776
17-03-17 17:28:23.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:23.148 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1055526960, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:28:23.148 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:28:23.148 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:23.148 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:23.148 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:28:23.258 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:28:23.258 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:28:23.258 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:23.258 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:23.268 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 17:28:23.298 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:23.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:23.298 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:23.298 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:23.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:23.308 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:23.308 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:23.308 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 17:28:23.308 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:23.308 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 17:28:23.488 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:23.488 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:23.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36312 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:28:23.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:23.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35400390625, Z-Position -0.165434169670581. ------
17-03-17 17:28:23.498 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17223 mm
17-03-17 17:28:23.498 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:23.498 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:23.498 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:28:23.498 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3540 mm, delta = 0.8386 mm
17-03-17 17:28:23.498 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37623, sync = True, waitForSettling = False)
17-03-17 17:28:23.498 -07 000000561 INF: Z Motor: Moving to -0.172227 mm, started at -0.165434 mm, distance = -6.79 um
17-03-17 17:28:23.498 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:23.508 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:23.508 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:23.518 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:23.518 -07 000000480 INF: FPGA: Recv YRDPOS 148182
17-03-17 17:28:23.528 -07 000000561 INF: FPGA: Xmit ZDACW 37623\n [Z Motor]
17-03-17 17:28:23.528 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:28:23.528 -07 000000618 INF: Y Motor: Encoder = 148182 = motor step 115767.2 = 72.3545 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:23.528 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:28:23.528 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:23.528 -07 000000618 INF: Y Motor: Moving 1341 steps-18
17-03-17 17:28:23.538 -07 000000561 INF: FPGA: 'ZDACW 37623' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 17:28:23.538 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:23.538 -07 000000482 INF: FPGA: Recv ZDACR 37623
17-03-17 17:28:23.548 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:23.548 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:23.548 -07 000000561 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 17:28:23.678 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:28:23.678 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:28:23.678 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:23.688 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:23.688 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:28:23.688 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:28:23.688 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:28:23.688 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:23.688 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:23.698 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:28:23.708 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:23.708 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:23.918 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 17:28:23.918 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:28:23.948 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:23.958 -07 000000462 INF: FPGA: Recv YRDPOS 149875
17-03-17 17:28:23.958 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:28:23.958 -07 000000618 INF: Y Motor: Encoder = 149875 = motor step 117089.8 = 73.1812 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:23.958 -07 000000618 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 17:28:23.958 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 17:28:24.318 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.231208,
17-03-17 17:28:24.908 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:24.908 -07 000000632 INF: FPGA: Recv YRDPOS 149875
17-03-17 17:28:24.918 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:24.918 -07 000000618 INF: Y Motor: Encoder = 149875 = motor step 117089.8 = 73.1812 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:24.928 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.011452, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:24.928 -07 000000618 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:24.938 -07 000000618 INF: Y Motor: Moved to 73.1812 after 1433 ms (table move)
17-03-17 17:28:24.938 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172227 mm (DAC = 37623)
17-03-17 17:28:24.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:24.938 -07 000000618 INF: FPGA: Recv ZSGSRD 36101
17-03-17 17:28:24.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:24.948 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:24.948 -07 000000482 INF: FPGA: Recv ZSGSRD 36105
17-03-17 17:28:24.958 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:24.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:24.958 -07 000000482 INF: FPGA: Recv ZSGSRD 36090
17-03-17 17:28:24.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:24.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:24.968 -07 000000482 INF: FPGA: Recv ZSGSRD 36096
17-03-17 17:28:24.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:24.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:24.978 -07 000000482 INF: FPGA: Recv ZSGSRD 36090
17-03-17 17:28:24.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:24.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:24.988 -07 000000482 INF: FPGA: Recv ZSGSRD 36098
17-03-17 17:28:24.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:24.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:24.998 -07 000000462 INF: FPGA: Recv ZSGSRD 36098
17-03-17 17:28:25.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.008 -07 000000462 INF: FPGA: Recv ZSGSRD 36108
17-03-17 17:28:25.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.018 -07 000000632 INF: FPGA: Recv ZSGSRD 36101
17-03-17 17:28:25.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.028 -07 000000618 INF: FPGA: Recv ZSGSRD 36105
17-03-17 17:28:25.038 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.038 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:25.038 -07 000000541 INF: FPGA: Recv ZPIEZORD 32154
17-03-17 17:28:25.048 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.048 -07 000000502 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.7 V.
17-03-17 17:28:25.048 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36099 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36100 (-171.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36090 (-171.3 uncal um), Max = 36108 (-171.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:28:25.048 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36099, posNoise = 9, negNoise = 9
17-03-17 17:28:25.048 -07 000000502 INF: Z Motor: After move to -0.172227, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:25.048 -07 000000502 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:28:25.048 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:25.098 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:28:25.098 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:25.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:25.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:25.098 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:25.098 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:25.098 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:25.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:25.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:25.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:25.108 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:25.108 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:25.118 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:28:25.118 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:28:25.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:25.168 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:25.368 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:25.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:25.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:25.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-17 17:28:25.408 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:25.408 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:25.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 17:28:25.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:28:25.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:25.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:25.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:28:25.508 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:25.508 -07 000000482 INF: Autofocus start
17-03-17 17:28:25.508 -07 000000482 INF: MeasureProfile start
17-03-17 17:28:25.508 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:25.518 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:25.518 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:25.518 -07 000000482 INF: MeasureProfile done
17-03-17 17:28:25.518 -07 000000482 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:28:25.518 -07 000000482 INF: Autofocus finished
17-03-17 17:28:25.718 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:25.718 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:25.718 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.18115234375, Z-position -0.172230986116564. ----------
17-03-17 17:28:25.728 -07 000000610 INF: Cycle	1	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:25.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36103, sync = True, waitForSettling = True)
17-03-17 17:28:25.728 -07 000000610 INF: Z Motor: Moving to -0.165269 mm, started at -0.172231 mm, distance = 6.96 um
17-03-17 17:28:25.728 -07 000000610 INF: FPGA: Xmit ZDACW 36103\n [Z Motor]
17-03-17 17:28:25.728 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:28:25.738 -07 000000610 INF: FPGA: 'ZDACW 36103' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:25.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:25.738 -07 000000561 INF: FPGA: Recv ZDACR 36103
17-03-17 17:28:25.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.898 -07 000000480 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:28:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:25.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.908 -07 000000429 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:28:25.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.918 -07 000000482 INF: FPGA: Recv ZSGSRD 35016
17-03-17 17:28:25.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.928 -07 000000618 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:28:25.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.938 -07 000000482 INF: FPGA: Recv ZSGSRD 35013
17-03-17 17:28:25.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.948 -07 000000429 INF: FPGA: Recv ZSGSRD 35019
17-03-17 17:28:25.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.958 -07 000000480 INF: FPGA: Recv ZSGSRD 35018
17-03-17 17:28:25.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.968 -07 000000618 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:28:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:28:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:25.988 -07 000000429 INF: FPGA: Recv ZSGSRD 35011
17-03-17 17:28:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:25.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:25.998 -07 000000462 INF: FPGA: Recv ZPIEZORD 30723
17-03-17 17:28:26.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:26.008 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.5 V.
17-03-17 17:28:26.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35016 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35017 (-164.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35011 (-164.4 uncal um), Max = 35019 (-164.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:26.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35016, posNoise = 3, negNoise = 5
17-03-17 17:28:26.008 -07 000000610 INF: Z Motor: After move to -0.165269, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:26.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:28:26.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:26.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:26.008 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:26.008 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:26.008 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:26.008 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:26.008 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:26.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:26.008 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:26.008 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:26.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:26.008 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:26.018 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:28:26.018 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:26.018 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:26.018 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:26.018 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:28:26.018 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:28:26.028 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:28:26.028 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:26.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36279 150\n [Camera]
17-03-17 17:28:26.228 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:26.498 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:26.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:26.618 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:26.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:26.618 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:26.618 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:26.618 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) start.
17-03-17 17:28:26.618 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:26.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:26.618 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:26.738 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:26.738 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:28:26.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36279 775
17-03-17 17:28:26.958 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 17:28:27.008 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 17:28:27.008 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:28:27.008 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:27.008 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:27.008 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:28:27.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:28:27.108 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:28:27.108 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:27.108 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:27.118 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 17:28:27.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:27.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:27.148 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:27.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:27.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:27.148 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:27.148 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:27.148 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1126371488, 0x0, 418435064) start.
17-03-17 17:28:27.158 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:27.158 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055526960, 0x0, 391868352) start.
17-03-17 17:28:27.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:27.338 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:27.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36279 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:28:27.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:27.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.18115234375, Z-Position -0.165273564367037. ------
17-03-17 17:28:27.348 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:27.348 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17208 mm
17-03-17 17:28:27.348 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:27.348 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:27.348 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:28:27.348 -07 000000429 INF: Y Motor: Moving to 74.0226 mm, started at 73.1812 mm, delta = 0.8415 mm
17-03-17 17:28:27.348 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37590, sync = True, waitForSettling = False)
17-03-17 17:28:27.348 -07 000000561 INF: Z Motor: Moving to -0.172076 mm, started at -0.165274 mm, distance = -6.80 um
17-03-17 17:28:27.358 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:27.358 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:27.358 -07 000000618 INF: FPGA: Recv YRDPOS 149875
17-03-17 17:28:27.368 -07 000000561 INF: FPGA: Xmit ZDACW 37590\n [Z Motor]
17-03-17 17:28:27.368 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:28:27.368 -07 000000429 INF: Y Motor: Encoder = 149875 = motor step 117089.8 = 73.1812 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:27.368 -07 000000429 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:27.368 -07 000000429 INF: Y Motor: Moving 1346 steps-23
17-03-17 17:28:27.368 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:28:27.378 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:27.378 -07 000000561 INF: FPGA: 'ZDACW 37590' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:28:27.388 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:27.398 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:27.398 -07 000000551 INF: FPGA: Recv ZDACR 37590
17-03-17 17:28:27.408 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:27.408 -07 000000561 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:28:27.528 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1126371488, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:28:27.528 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:28:27.528 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:27.538 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:27.538 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055526960, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:28:27.538 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:28:27.538 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:27.538 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:27.538 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:28:27.538 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:28:27.578 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:27.578 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:28:27.758 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:28:27.758 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:28:27.788 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:27.788 -07 000000480 INF: FPGA: Recv YRDPOS 151579
17-03-17 17:28:27.798 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:27.798 -07 000000429 INF: Y Motor: Encoder = 151579 = motor step 118421.1 = 74.0132 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:27.798 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:28:27.798 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.120 mm/sec
17-03-17 17:28:28.748 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:28.748 -07 000000482 INF: FPGA: Recv YRDPOS 151579
17-03-17 17:28:28.758 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.758 -07 000000429 INF: Y Motor: Encoder = 151579 = motor step 118421.1 = 74.0132 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:28.768 -07 000000429 INF: Y Motor: After move to 74.022606, error = -0.009422, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:28.768 -07 000000429 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:28.768 -07 000000429 INF: Y Motor: Moved to 74.0132 after 1418 ms (table move)
17-03-17 17:28:28.768 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172076 mm (DAC = 37590)
17-03-17 17:28:28.768 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.778 -07 000000480 INF: FPGA: Recv ZSGSRD 36085
17-03-17 17:28:28.778 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:28:28.778 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.778 -07 000000480 INF: FPGA: Recv ZSGSRD 36076
17-03-17 17:28:28.788 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:28.788 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.788 -07 000000618 INF: FPGA: Recv ZSGSRD 36078
17-03-17 17:28:28.798 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.798 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.798 -07 000000569 INF: FPGA: Recv ZSGSRD 36078
17-03-17 17:28:28.808 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.808 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.808 -07 000000482 INF: FPGA: Recv ZSGSRD 36080
17-03-17 17:28:28.818 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.818 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.818 -07 000000462 INF: FPGA: Recv ZSGSRD 36076
17-03-17 17:28:28.828 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.828 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.828 -07 000000482 INF: FPGA: Recv ZSGSRD 36077
17-03-17 17:28:28.838 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.838 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.838 -07 000000480 INF: FPGA: Recv ZSGSRD 36076
17-03-17 17:28:28.848 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.848 -07 000000561 INF: FPGA: Recv ZSGSRD 36075
17-03-17 17:28:28.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:28.858 -07 000000569 INF: FPGA: Recv ZSGSRD 36074
17-03-17 17:28:28.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.868 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:28.868 -07 000000431 INF: FPGA: Recv ZPIEZORD 32102
17-03-17 17:28:28.878 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:28.878 -07 000000458 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.8 V.
17-03-17 17:28:28.878 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36078 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36076 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36074 (-171.2 uncal um), Max = 36085 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:28:28.878 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36078, posNoise = 7, negNoise = 4
17-03-17 17:28:28.878 -07 000000458 INF: Z Motor: After move to -0.172076, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:28.878 -07 000000458 INF: Z Motor: Settle wait time = 1422 ms, measure time = 102 ms (allowed 150 ms), total time = 1524 ms
17-03-17 17:28:28.878 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:28.928 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 17:28:28.928 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:28.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:28.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:28.928 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:28.928 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:28.928 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:28.928 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:28.928 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:28.928 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:28.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:28.938 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:28.948 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:28:28.948 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:28:28.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:28.998 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:29.188 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:29.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:29.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:29.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1161793752, 0x0, 559484976) start.
17-03-17 17:28:29.228 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:29.238 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:29.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 17:28:29.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1161793752, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 17:28:29.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:29.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:28:29.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 17:28:29.338 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:29.338 -07 000000569 INF: Autofocus start
17-03-17 17:28:29.338 -07 000000569 INF: MeasureProfile start
17-03-17 17:28:29.338 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:29.348 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:29.348 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:29.348 -07 000000569 INF: MeasureProfile done
17-03-17 17:28:29.348 -07 000000569 INF: X=-80  Z correction [um]=-0.4885566
17-03-17 17:28:29.358 -07 000000569 INF: Autofocus finished
17-03-17 17:28:29.548 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:29.548 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:29.548 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.01318359375, Z-position -0.172096077661587. ----------
17-03-17 17:28:29.558 -07 000000610 INF: Cycle	1	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:29.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35996, sync = True, waitForSettling = True)
17-03-17 17:28:29.558 -07 000000610 INF: Z Motor: Moving to -0.164779 mm, started at -0.172096 mm, distance = 7.32 um
17-03-17 17:28:29.558 -07 000000610 INF: FPGA: Xmit ZDACW 35996\n [Z Motor]
17-03-17 17:28:29.558 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:28:29.568 -07 000000610 INF: FPGA: 'ZDACW 35996' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:29.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:29.568 -07 000000482 INF: FPGA: Recv ZDACR 35996
17-03-17 17:28:29.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:29.698 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.212256,
17-03-17 17:28:29.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.728 -07 000000551 INF: FPGA: Recv ZSGSRD 34939
17-03-17 17:28:29.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.738 -07 000000429 INF: FPGA: Recv ZSGSRD 34945
17-03-17 17:28:29.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.758 -07 000000480 INF: FPGA: Recv ZSGSRD 34937
17-03-17 17:28:29.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:29.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.768 -07 000000431 INF: FPGA: Recv ZSGSRD 34943
17-03-17 17:28:29.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.778 -07 000000618 INF: FPGA: Recv ZSGSRD 34942
17-03-17 17:28:29.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.788 -07 000000480 INF: FPGA: Recv ZSGSRD 34939
17-03-17 17:28:29.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.798 -07 000000618 INF: FPGA: Recv ZSGSRD 34941
17-03-17 17:28:29.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.808 -07 000000480 INF: FPGA: Recv ZSGSRD 34937
17-03-17 17:28:29.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.818 -07 000000431 INF: FPGA: Recv ZSGSRD 34945
17-03-17 17:28:29.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:29.828 -07 000000431 INF: FPGA: Recv ZSGSRD 34939
17-03-17 17:28:29.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:29.838 -07 000000480 INF: FPGA: Recv ZPIEZORD 30666
17-03-17 17:28:29.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:29.848 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.493 V. Piezo Error = -9.4 V.
17-03-17 17:28:29.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34941 (-163.9 uncal um), Error = 0.8 uncal um, Median = 34940 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 34937 (-163.9 uncal um), Max = 34945 (-164.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:28:29.848 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34941, posNoise = 4, negNoise = 4
17-03-17 17:28:29.848 -07 000000610 INF: Z Motor: After move to -0.164779, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:29.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 17:28:29.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:29.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:29.848 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:29.848 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:29.848 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:29.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:29.848 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:29.848 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:29.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:29.848 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:29.848 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:29.848 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:29.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:29.858 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:29.858 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:28:29.858 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:29.868 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:28:29.868 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:29.868 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:28:29.868 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:29.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36173 150\n [Camera]
17-03-17 17:28:30.068 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:30.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:30.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:30.458 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:30.458 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:30.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:28:30.458 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:30.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:30.458 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:30.458 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:30.458 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:28:30.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36173 775
17-03-17 17:28:30.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:30.838 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:28:30.838 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:28:30.838 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:30.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:28:30.838 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:28:30.838 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:30.838 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:30.838 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:28:30.838 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:28:30.848 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:28:30.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:30.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:30.988 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:31.098 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:31.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:31.098 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:31.098 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:31.098 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:28:31.098 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:31.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:28:31.178 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:28:31.178 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:31.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36173 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:28:31.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:28:31.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.01318359375, Z-Position -0.164791748456405. ------
17-03-17 17:28:31.188 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17159 mm
17-03-17 17:28:31.188 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:31.188 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:31.188 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:28:31.188 -07 000000482 INF: Y Motor: Moving to 74.8526 mm, started at 74.0132 mm, delta = 0.8394 mm
17-03-17 17:28:31.188 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:31.188 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37483, sync = True, waitForSettling = False)
17-03-17 17:28:31.188 -07 000000480 INF: Z Motor: Moving to -0.171586 mm, started at -0.164792 mm, distance = -6.79 um
17-03-17 17:28:31.198 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:31.198 -07 000000480 INF: FPGA: Xmit ZDACW 37483\n [Z Motor]
17-03-17 17:28:31.198 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:28:31.208 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:31.208 -07 000000480 INF: FPGA: 'ZDACW 37483' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:28:31.208 -07 000000551 INF: FPGA: Recv YRDPOS 151579
17-03-17 17:28:31.218 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:31.218 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:28:31.218 -07 000000482 INF: Y Motor: Encoder = 151579 = motor step 118421.1 = 74.0132 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:31.218 -07 000000482 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:31.218 -07 000000482 INF: Y Motor: Moving 1343 steps-19
17-03-17 17:28:31.228 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:31.228 -07 000000462 INF: FPGA: Recv ZDACR 37483
17-03-17 17:28:31.238 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:31.238 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:31.238 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:28:31.418 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:31.418 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:28:31.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:28:31.478 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:28:31.478 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:31.478 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:31.478 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:28:31.478 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:28:31.478 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:31.488 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:31.488 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 17:28:31.488 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:28:31.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:31.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:31.608 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:28:31.608 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:28:31.628 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:31.638 -07 000000462 INF: FPGA: Recv YRDPOS 153267
17-03-17 17:28:31.638 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:28:31.638 -07 000000482 INF: Y Motor: Encoder = 153267 = motor step 119739.8 = 74.8374 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:31.638 -07 000000482 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 17:28:31.638 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 17:28:32.588 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:32.588 -07 000000462 INF: FPGA: Recv YRDPOS 153267
17-03-17 17:28:32.598 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:32.598 -07 000000482 INF: Y Motor: Encoder = 153267 = motor step 119739.8 = 74.8374 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:32.608 -07 000000482 INF: Y Motor: After move to 74.852608, error = -0.015205, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:32.608 -07 000000482 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:32.608 -07 000000482 INF: Y Motor: Moved to 74.8374 after 1418 ms (table move)
17-03-17 17:28:32.608 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171586 mm (DAC = 37483)
17-03-17 17:28:32.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.608 -07 000000618 INF: FPGA: Recv ZSGSRD 35995
17-03-17 17:28:32.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:28:32.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36007
17-03-17 17:28:32.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.628 -07 000000458 INF: FPGA: Recv ZSGSRD 36004
17-03-17 17:28:32.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.638 -07 000000462 INF: FPGA: Recv ZSGSRD 36010
17-03-17 17:28:32.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.648 -07 000000618 INF: FPGA: Recv ZSGSRD 36003
17-03-17 17:28:32.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.658 -07 000000458 INF: FPGA: Recv ZSGSRD 35995
17-03-17 17:28:32.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.668 -07 000000462 INF: FPGA: Recv ZSGSRD 36000
17-03-17 17:28:32.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.678 -07 000000551 INF: FPGA: Recv ZSGSRD 35995
17-03-17 17:28:32.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.688 -07 000000482 INF: FPGA: Recv ZSGSRD 35998
17-03-17 17:28:32.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:32.698 -07 000000458 INF: FPGA: Recv ZSGSRD 36000
17-03-17 17:28:32.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.708 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:32.708 -07 000000618 INF: FPGA: Recv ZPIEZORD 32020
17-03-17 17:28:32.718 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:32.718 -07 000000431 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.8 V.
17-03-17 17:28:32.718 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36001 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36000 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35995 (-170.7 uncal um), Max = 36010 (-170.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:28:32.718 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36001, posNoise = 9, negNoise = 6
17-03-17 17:28:32.718 -07 000000431 INF: Z Motor: After move to -0.171586, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:32.718 -07 000000431 INF: Z Motor: Settle wait time = 1420 ms, measure time = 104 ms (allowed 150 ms), total time = 1524 ms
17-03-17 17:28:32.718 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:32.768 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 17:28:32.768 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:32.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:32.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:32.768 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:32.768 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:32.768 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:32.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:32.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:32.768 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:32.778 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:32.778 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:32.788 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:28:32.788 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:28:32.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:32.838 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:33.038 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:33.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:33.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:33.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055526960, 0x0, 559484976) start.
17-03-17 17:28:33.078 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:33.078 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:33.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:28:33.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055526960, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:28:33.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:33.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:33.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:28:33.178 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:33.178 -07 000000569 INF: Autofocus start
17-03-17 17:28:33.178 -07 000000569 INF: MeasureProfile start
17-03-17 17:28:33.178 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:33.188 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:33.188 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:33.188 -07 000000569 INF: MeasureProfile done
17-03-17 17:28:33.188 -07 000000569 INF: X=-96  Z correction [um]=-0.5732754
17-03-17 17:28:33.188 -07 000000569 INF: Autofocus finished
17-03-17 17:28:33.388 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:33.388 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:33.398 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83740234375, Z-position -0.171601413326671. ----------
17-03-17 17:28:33.398 -07 000000610 INF: Cycle	1	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:33.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35871, sync = True, waitForSettling = True)
17-03-17 17:28:33.398 -07 000000610 INF: Z Motor: Moving to -0.164207 mm, started at -0.171601 mm, distance = 7.39 um
17-03-17 17:28:33.398 -07 000000610 INF: FPGA: Xmit ZDACW 35871\n [Z Motor]
17-03-17 17:28:33.398 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:28:33.408 -07 000000610 INF: FPGA: 'ZDACW 35871' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:33.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:33.408 -07 000000482 INF: FPGA: Recv ZDACR 35871
17-03-17 17:28:33.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.568 -07 000000462 INF: FPGA: Recv ZSGSRD 34855
17-03-17 17:28:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.578 -07 000000480 INF: FPGA: Recv ZSGSRD 34851
17-03-17 17:28:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.588 -07 000000458 INF: FPGA: Recv ZSGSRD 34853
17-03-17 17:28:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.598 -07 000000431 INF: FPGA: Recv ZSGSRD 34847
17-03-17 17:28:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.608 -07 000000618 INF: FPGA: Recv ZSGSRD 34852
17-03-17 17:28:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.618 -07 000000482 INF: FPGA: Recv ZSGSRD 34852
17-03-17 17:28:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.628 -07 000000462 INF: FPGA: Recv ZSGSRD 34848
17-03-17 17:28:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.638 -07 000000431 INF: FPGA: Recv ZSGSRD 34849
17-03-17 17:28:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.648 -07 000000618 INF: FPGA: Recv ZSGSRD 34851
17-03-17 17:28:33.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:33.658 -07 000000482 INF: FPGA: Recv ZSGSRD 34857
17-03-17 17:28:33.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:33.668 -07 000000569 INF: FPGA: Recv ZPIEZORD 30533
17-03-17 17:28:33.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:33.678 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 54.7 V, since DAC is at 5.474 V. Piezo Error = -9.5 V.
17-03-17 17:28:33.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.2 um, Read 10 ADC samples: Avg = 34852 (-163.4 uncal um), Error = 0.8 uncal um, Median = 34852 (-163.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34847 (-163.3 uncal um), Max = 34857 (-163.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:33.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34852, posNoise = 5, negNoise = 5
17-03-17 17:28:33.678 -07 000000610 INF: Z Motor: After move to -0.164207, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:33.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:28:33.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:33.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:33.678 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:33.678 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:33.678 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:33.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:33.678 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:33.678 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:33.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:33.678 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:33.678 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:33.678 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:33.688 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:33.688 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:33.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:28:33.688 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:33.698 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:28:33.698 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:28:33.698 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:28:33.698 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:28:33.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36047 150\n [Camera]
17-03-17 17:28:33.908 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:34.288 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:34.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:34.298 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:34.298 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:34.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:34.298 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:34.298 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:34.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1074608344, 0x0, 391868352) start.
17-03-17 17:28:34.308 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:34.308 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1110030608, 0x0, 418435064) start.
17-03-17 17:28:34.488 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36047 775
17-03-17 17:28:34.638 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:34.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1074608344, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:28:34.668 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:28:34.668 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:34.678 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1110030608, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:28:34.678 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:34.678 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:28:34.678 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:28:34.678 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:34.678 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:34.688 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:28:34.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:34.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:34.828 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:34.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:34.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:34.828 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:34.948 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:34.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:28:34.948 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:34.948 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:28:35.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:35.018 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:35.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36047 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-17 17:28:35.078 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.196029,
17-03-17 17:28:35.328 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:28:35.328 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:28:35.328 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:35.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:28:35.328 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:28:35.328 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:35.328 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:35.328 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:28:35.328 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 17:28:35.328 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:28:35.338 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 17:28:35.378 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 17:28:35.378 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:28:35.418 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 17:28:35.418 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 17:28:35.418 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:28:35.418 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 17:28:35.428 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:35.428 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 17:28:35.928 -07 000000431 INF: FPGA: Recv EMIN
17-03-17 17:28:35.928 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:28:35.928 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 17:28:35.928 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 17:28:35.938 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:35.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:28:35.938 -07 000000610 INF: Skipping coarse focus in cycle 1, tile 1: adopting Best-Z from focus model: -0.133503
17-03-17 17:28:35.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83740234375, Z-Position -0.164219993575788. ------
17-03-17 17:28:35.938 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13950 mm
17-03-17 17:28:35.938 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:35.938 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:35.948 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30474, sync = True, waitForSettling = False)
17-03-17 17:28:35.948 -07 000000462 INF: Z Motor: Moving to -0.139501 mm, started at -0.164220 mm, distance = 24.72 um
17-03-17 17:28:35.948 -07 000000462 INF: FPGA: Xmit ZDACW 30474\n [Z Motor]
17-03-17 17:28:35.948 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:28:35.948 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 74.8374 mm, delta = -14.9248 mm
17-03-17 17:28:35.948 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:35.948 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:28:35.948 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:28:35.958 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:35.958 -07 000000462 INF: FPGA: 'ZDACW 30474' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:35.958 -07 000000458 INF: FPGA: Recv YRDPOS 153268
17-03-17 17:28:35.968 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:28:35.968 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:35.968 -07 000000569 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:35.968 -07 000000569 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 17:28:35.968 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:28:35.978 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:35.978 -07 000000458 INF: FPGA: Recv ZDACR 30474
17-03-17 17:28:35.988 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:28:35.988 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:35.988 -07 000000462 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 17:28:36.168 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:36.168 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 17:28:36.498 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:36.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:37.608 -07 000000433 INF: FPGA: Recv YMVTO 122703 23911
17-03-17 17:28:37.608 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1646 ms overall
17-03-17 17:28:37.608 -07 000000569 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 17:28:37.608 -07 000000569 INF: Y Motor: To move from 74.838 to 59.913 (-14.925 mm) should take 23880 steps, but required 23911 steps (14.944 mm). Slippage = 0.019 mm (0.00%).
17-03-17 17:28:37.608 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.925 mm, average velocity = 9.067 mm/sec
17-03-17 17:28:40.438 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.200077,
17-03-17 17:28:40.458 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:40.458 -07 000000551 INF: FPGA: Recv YRDPOS 122698
17-03-17 17:28:40.468 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.468 -07 000000569 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:40.488 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:40.488 -07 000000569 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 17:28:40.488 -07 000000569 INF: Y Motor: Moved to 59.9111 after 4546 ms
17-03-17 17:28:40.498 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139501 mm (DAC = 30474)
17-03-17 17:28:40.498 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.498 -07 000000458 INF: FPGA: Recv ZSGSRD 31003
17-03-17 17:28:40.508 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.508 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.508 -07 000000569 INF: FPGA: Recv ZSGSRD 31006
17-03-17 17:28:40.518 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.518 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.518 -07 000000551 INF: FPGA: Recv ZSGSRD 31011
17-03-17 17:28:40.528 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.528 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.528 -07 000000480 INF: FPGA: Recv ZSGSRD 31001
17-03-17 17:28:40.538 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.538 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.538 -07 000000433 INF: FPGA: Recv ZSGSRD 31004
17-03-17 17:28:40.548 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.548 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.548 -07 000000551 INF: FPGA: Recv ZSGSRD 31009
17-03-17 17:28:40.558 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.558 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.558 -07 000000433 INF: FPGA: Recv ZSGSRD 31005
17-03-17 17:28:40.568 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.568 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.568 -07 000000551 INF: FPGA: Recv ZSGSRD 31005
17-03-17 17:28:40.578 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.578 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.578 -07 000000433 INF: FPGA: Recv ZSGSRD 31005
17-03-17 17:28:40.588 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.588 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:40.588 -07 000000569 INF: FPGA: Recv ZSGSRD 31006
17-03-17 17:28:40.598 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:40.598 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:40.598 -07 000000431 INF: FPGA: Recv ZPIEZORD 26565
17-03-17 17:28:40.608 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:40.608 -07 000000482 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.650 V. Piezo Error = -9.8 V.
17-03-17 17:28:40.608 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31006 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31005 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31001 (-138.7 uncal um), Max = 31011 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:40.608 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31006, posNoise = 5, negNoise = 5
17-03-17 17:28:40.608 -07 000000482 INF: Z Motor: After move to -0.139501, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:40.608 -07 000000482 INF: Z Motor: Settle wait time = 4549 ms, measure time = 111 ms (allowed 150 ms), total time = 4660 ms
17-03-17 17:28:40.608 -07 000000482 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:40.648 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4702 ms
17-03-17 17:28:40.648 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:40.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:40.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:40.648 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:40.648 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:40.648 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:40.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:40.648 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:40.648 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:28:40.668 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 17:28:40.668 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:40.678 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:40.678 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:40.678 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:28:40.678 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 17:28:40.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:40.728 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:40.928 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:40.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:40.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:40.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055526960, 0x0, 559484976) start.
17-03-17 17:28:40.968 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:40.968 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:40.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:28:41.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1055526960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:28:41.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:41.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:41.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:28:41.068 -07 000000551 INF: Image SNR check: start
17-03-17 17:28:41.068 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:41.068 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:41.078 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:41.078 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:41.078 -07 000000551 INF: Image SNR check: pass  [peak (Max-Min)=70.33]
17-03-17 17:28:41.078 -07 000000551 INF: Autofocus start
17-03-17 17:28:41.078 -07 000000551 INF: MeasureProfile start
17-03-17 17:28:41.098 -07 000000551 INF: MeasureProfile done
17-03-17 17:28:41.098 -07 000000551 INF: X=-144  Z correction [um]=-0.7043689
17-03-17 17:28:41.098 -07 000000551 INF: Autofocus finished
17-03-17 17:28:41.278 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:41.278 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:41.278 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139512473678575. ----------
17-03-17 17:28:41.288 -07 000000610 INF: Cycle	1	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:41.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28833, sync = True, waitForSettling = True)
17-03-17 17:28:41.288 -07 000000610 INF: Z Motor: Moving to -0.131989 mm, started at -0.139512 mm, distance = 7.52 um
17-03-17 17:28:41.288 -07 000000610 INF: FPGA: Xmit ZDACW 28833\n [Z Motor]
17-03-17 17:28:41.288 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:28:41.298 -07 000000610 INF: FPGA: 'ZDACW 28833' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:41.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:41.298 -07 000000569 INF: FPGA: Recv ZDACR 28833
17-03-17 17:28:41.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:41.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.458 -07 000000462 INF: FPGA: Recv ZSGSRD 29831
17-03-17 17:28:41.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:41.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.468 -07 000000551 INF: FPGA: Recv ZSGSRD 29835
17-03-17 17:28:41.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.478 -07 000000458 INF: FPGA: Recv ZSGSRD 29836
17-03-17 17:28:41.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.488 -07 000000551 INF: FPGA: Recv ZSGSRD 29840
17-03-17 17:28:41.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.498 -07 000000433 INF: FPGA: Recv ZSGSRD 29833
17-03-17 17:28:41.498 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:41.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:41.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29824
17-03-17 17:28:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.518 -07 000000458 INF: FPGA: Recv ZSGSRD 29835
17-03-17 17:28:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.528 -07 000000551 INF: FPGA: Recv ZSGSRD 29830
17-03-17 17:28:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29834
17-03-17 17:28:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:41.548 -07 000000480 INF: FPGA: Recv ZSGSRD 29838
17-03-17 17:28:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:41.558 -07 000000433 INF: FPGA: Recv ZPIEZORD 25325
17-03-17 17:28:41.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:41.568 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.9 V.
17-03-17 17:28:41.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29834 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29834 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29824 (-131.1 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:28:41.568 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29834, posNoise = 6, negNoise = 10
17-03-17 17:28:41.568 -07 000000610 INF: Z Motor: After move to -0.131989, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:41.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:28:41.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:41.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:41.568 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:41.568 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:41.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:41.568 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:41.568 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:41.568 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:41.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:28:41.568 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:28:41.568 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:41.568 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:41.578 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:41.578 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:41.588 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:28:41.588 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:41.588 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 17:28:41.588 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:41.598 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:28:41.598 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:41.598 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:28:41.598 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 17:28:41.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29010 150\n [Camera]
17-03-17 17:28:41.808 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:42.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:42.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:42.198 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:42.198 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:42.198 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1074608344, 0x0, 391868352) start.
17-03-17 17:28:42.198 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:42.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:42.198 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:42.198 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:42.198 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1110030608, 0x0, 418435064) start.
17-03-17 17:28:42.388 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29010 775
17-03-17 17:28:42.538 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:42.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1074608344, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:28:42.568 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:28:42.568 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:42.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1110030608, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:28:42.578 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:28:42.578 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:42.578 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:28:42.578 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:28:42.578 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:42.588 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:28:42.728 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:42.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:42.728 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:42.728 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:42.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1145452872, 0x0, 391868352) start.
17-03-17 17:28:42.728 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:42.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:42.728 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:42.728 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:42.728 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:28:42.918 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:28:42.918 -07 000000632 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:42.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29010 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-17 17:28:42.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:28:42.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.131983297048431. ------
17-03-17 17:28:42.918 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:42.918 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13880 mm
17-03-17 17:28:42.918 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:43.028 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:43.038 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 110 ms to get response, and 111 ms overall
17-03-17 17:28:43.038 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:28:43.038 -07 000000458 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 17:28:43.038 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:43.038 -07 000000632 INF: Z Motor: Entering MoveAbsStepped (DAC = 30320, sync = True, waitForSettling = False)
17-03-17 17:28:43.038 -07 000000632 INF: Z Motor: Moving to -0.138796 mm, started at -0.131983 mm, distance = -6.81 um
17-03-17 17:28:43.048 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:43.048 -07 000000431 INF: FPGA: Recv YRDPOS 122698
17-03-17 17:28:43.058 -07 000000632 INF: FPGA: Xmit ZDACW 30320\n [Z Motor]
17-03-17 17:28:43.058 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:43.058 -07 000000458 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:43.058 -07 000000458 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:43.058 -07 000000458 INF: Y Motor: Moving 1330 steps2
17-03-17 17:28:43.058 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:28:43.068 -07 000000632 INF: FPGA: 'ZDACW 30320' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:28:43.068 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:43.078 -07 000000632 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:43.078 -07 000000569 INF: FPGA: Recv ZDACR 30320
17-03-17 17:28:43.088 -07 000000632 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:43.088 -07 000000632 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 17:28:43.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:28:43.108 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:28:43.108 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:43.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1145452872, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:28:43.108 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:28:43.108 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:43.108 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:43.118 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:28:43.118 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:28:43.118 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:28:43.238 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:43.238 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:43.438 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:28:43.438 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:28:43.468 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:43.468 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-17 17:28:43.478 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:43.478 -07 000000458 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:43.478 -07 000000458 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 17:28:43.478 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.831 mm, average velocity = 2.149 mm/sec
17-03-17 17:28:44.428 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:44.428 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-17 17:28:44.438 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:44.438 -07 000000458 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:44.448 -07 000000458 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:44.448 -07 000000458 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:44.448 -07 000000458 INF: Y Motor: Moved to 60.7329 after 1419 ms (table move)
17-03-17 17:28:44.458 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138796 mm (DAC = 30320)
17-03-17 17:28:44.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.458 -07 000000480 INF: FPGA: Recv ZSGSRD 30903
17-03-17 17:28:44.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:44.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.468 -07 000000632 INF: FPGA: Recv ZSGSRD 30890
17-03-17 17:28:44.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.478 -07 000000458 INF: FPGA: Recv ZSGSRD 30894
17-03-17 17:28:44.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.488 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.488 -07 000000541 INF: FPGA: Recv ZSGSRD 30896
17-03-17 17:28:44.498 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.498 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.498 -07 000000632 INF: FPGA: Recv ZSGSRD 30902
17-03-17 17:28:44.508 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.508 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.508 -07 000000458 INF: FPGA: Recv ZSGSRD 30888
17-03-17 17:28:44.518 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.518 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.518 -07 000000632 INF: FPGA: Recv ZSGSRD 30895
17-03-17 17:28:44.528 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.528 -07 000000561 INF: FPGA: Recv ZSGSRD 30894
17-03-17 17:28:44.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.538 -07 000000569 INF: FPGA: Recv ZSGSRD 30892
17-03-17 17:28:44.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.548 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:44.548 -07 000000551 INF: FPGA: Recv ZSGSRD 30891
17-03-17 17:28:44.558 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.558 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:44.558 -07 000000569 INF: FPGA: Recv ZPIEZORD 26720
17-03-17 17:28:44.568 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:44.568 -07 000000502 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.2 V.
17-03-17 17:28:44.568 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30894 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30894 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30888 (-138.0 uncal um), Max = 30903 (-138.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:28:44.568 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30894, posNoise = 9, negNoise = 6
17-03-17 17:28:44.568 -07 000000502 INF: Z Motor: After move to -0.138796, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:44.568 -07 000000502 INF: Z Motor: Settle wait time = 1421 ms, measure time = 108 ms (allowed 150 ms), total time = 1529 ms
17-03-17 17:28:44.568 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:44.618 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1691 ms
17-03-17 17:28:44.618 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:44.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:44.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:44.618 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:44.618 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:44.618 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:44.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:44.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:44.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:44.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:44.628 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:44.638 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:28:44.638 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:28:44.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:44.678 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:44.878 -07 000000632 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:44.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:44.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:44.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:28:44.918 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:44.918 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:44.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 17:28:45.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 17:28:45.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:45.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:28:45.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 17:28:45.118 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:45.118 -07 000000433 INF: Autofocus start
17-03-17 17:28:45.118 -07 000000433 INF: MeasureProfile start
17-03-17 17:28:45.118 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:45.128 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:45.128 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:45.128 -07 000000433 INF: MeasureProfile done
17-03-17 17:28:45.128 -07 000000433 INF: X=-100  Z correction [um]=-0.4901849
17-03-17 17:28:45.128 -07 000000433 INF: Autofocus finished
17-03-17 17:28:45.328 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:45.328 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:45.328 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138792961918698. ----------
17-03-17 17:28:45.328 -07 000000610 INF: Cycle	1	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:45.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28726, sync = True, waitForSettling = True)
17-03-17 17:28:45.338 -07 000000610 INF: Z Motor: Moving to -0.131499 mm, started at -0.138793 mm, distance = 7.29 um
17-03-17 17:28:45.338 -07 000000610 INF: FPGA: Xmit ZDACW 28726\n [Z Motor]
17-03-17 17:28:45.338 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:28:45.348 -07 000000610 INF: FPGA: 'ZDACW 28726' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:45.348 -07 000000429 INF: FPGA: Recv ZDACR 28726
17-03-17 17:28:45.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.508 -07 000000382 INF: FPGA: Recv ZSGSRD 29757
17-03-17 17:28:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29753
17-03-17 17:28:45.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:45.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.548 -07 000000433 INF: FPGA: Recv ZSGSRD 29755
17-03-17 17:28:45.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.558 -07 000000431 INF: FPGA: Recv ZSGSRD 29758
17-03-17 17:28:45.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.568 -07 000000462 INF: FPGA: Recv ZSGSRD 29761
17-03-17 17:28:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.578 -07 000000429 INF: FPGA: Recv ZSGSRD 29760
17-03-17 17:28:45.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.588 -07 000000458 INF: FPGA: Recv ZSGSRD 29755
17-03-17 17:28:45.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.598 -07 000000569 INF: FPGA: Recv ZSGSRD 29763
17-03-17 17:28:45.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.608 -07 000000458 INF: FPGA: Recv ZSGSRD 29757
17-03-17 17:28:45.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:45.618 -07 000000431 INF: FPGA: Recv ZSGSRD 29759
17-03-17 17:28:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:45.628 -07 000000429 INF: FPGA: Recv ZPIEZORD 25288
17-03-17 17:28:45.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:45.638 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.8 V.
17-03-17 17:28:45.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29758 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29758 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29753 (-130.7 uncal um), Max = 29763 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:45.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29758, posNoise = 5, negNoise = 5
17-03-17 17:28:45.638 -07 000000610 INF: Z Motor: After move to -0.131499, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:45.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 301 ms)
17-03-17 17:28:45.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:45.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:45.638 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:45.638 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:45.638 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:45.638 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:45.638 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:45.638 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:45.638 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:45.638 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:45.638 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:45.638 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:45.638 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:45.638 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:45.648 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:28:45.648 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:45.658 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:28:45.658 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:28:45.658 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:28:45.658 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:28:45.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28903 150\n [Camera]
17-03-17 17:28:45.808 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.186502,
17-03-17 17:28:45.868 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:46.248 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:46.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:46.258 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:46.258 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:46.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:46.258 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:46.258 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:46.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:28:46.258 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:46.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1055526960, 0x0, 418435064) start.
17-03-17 17:28:46.448 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28903 775
17-03-17 17:28:46.498 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:46.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:46.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:46.658 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:28:46.658 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:28:46.658 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:46.658 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:46.658 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:28:46.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1055526960, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:28:46.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:28:46.658 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:46.658 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:46.668 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:28:46.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:46.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:46.788 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:46.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:46.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:46.788 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:46.788 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:46.788 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:28:46.798 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:46.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) start.
17-03-17 17:28:46.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:46.978 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:46.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28903 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 17:28:46.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:28:46.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.131495056925658. ------
17-03-17 17:28:46.978 -07 000000632 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:46.978 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13831 mm
17-03-17 17:28:46.978 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:46.988 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:46.988 -07 000000632 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:28:46.988 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:28:46.988 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 17:28:46.988 -07 000000632 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:46.988 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30213, sync = True, waitForSettling = False)
17-03-17 17:28:46.988 -07 000000429 INF: Z Motor: Moving to -0.138306 mm, started at -0.131495 mm, distance = -6.81 um
17-03-17 17:28:46.998 -07 000000429 INF: FPGA: Xmit ZDACW 30213\n [Z Motor]
17-03-17 17:28:46.998 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:28:47.008 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:47.008 -07 000000429 INF: FPGA: 'ZDACW 30213' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:28:47.008 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:28:47.018 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:28:47.018 -07 000000382 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:47.018 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:47.018 -07 000000618 INF: FPGA: Recv ZDACR 30213
17-03-17 17:28:47.018 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:47.018 -07 000000382 INF: Y Motor: Moving 1343 steps-20
17-03-17 17:28:47.028 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:47.028 -07 000000429 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 17:28:47.028 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:47.188 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:47.188 -07 000000632 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 17:28:47.188 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 17:28:47.188 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:28:47.188 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:47.198 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:47.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1090949224, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:28:47.198 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:28:47.198 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:47.198 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:47.198 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 17:28:47.198 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 17:28:47.398 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 17:28:47.398 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 17:28:47.428 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:47.438 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 17:28:47.438 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:28:47.438 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:47.438 -07 000000382 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:28:47.438 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.192 mm/sec
17-03-17 17:28:48.388 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:48.388 -07 000000433 INF: FPGA: Recv YRDPOS 126083
17-03-17 17:28:48.398 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:48.398 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:48.408 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:48.408 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:48.408 -07 000000382 INF: Y Motor: Moved to 61.5640 after 1426 ms (table move)
17-03-17 17:28:48.418 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138306 mm (DAC = 30213)
17-03-17 17:28:48.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.418 -07 000000480 INF: FPGA: Recv ZSGSRD 30828
17-03-17 17:28:48.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:48.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.428 -07 000000551 INF: FPGA: Recv ZSGSRD 30812
17-03-17 17:28:48.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.438 -07 000000541 INF: FPGA: Recv ZSGSRD 30822
17-03-17 17:28:48.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.448 -07 000000382 INF: FPGA: Recv ZSGSRD 30822
17-03-17 17:28:48.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.458 -07 000000480 INF: FPGA: Recv ZSGSRD 30823
17-03-17 17:28:48.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.468 -07 000000632 INF: FPGA: Recv ZSGSRD 30831
17-03-17 17:28:48.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.478 -07 000000551 INF: FPGA: Recv ZSGSRD 30817
17-03-17 17:28:48.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.488 -07 000000561 INF: FPGA: Recv ZSGSRD 30824
17-03-17 17:28:48.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:48.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.498 -07 000000569 INF: FPGA: Recv ZSGSRD 30812
17-03-17 17:28:48.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:48.508 -07 000000502 INF: FPGA: Recv ZSGSRD 30826
17-03-17 17:28:48.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.518 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:48.518 -07 000000482 INF: FPGA: Recv ZPIEZORD 26693
17-03-17 17:28:48.528 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:48.528 -07 000000431 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.1 V.
17-03-17 17:28:48.528 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30822 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30822 (-137.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30812 (-137.5 uncal um), Max = 30831 (-137.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:28:48.528 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30822, posNoise = 9, negNoise = 10
17-03-17 17:28:48.528 -07 000000431 INF: Z Motor: After move to -0.138306, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:48.528 -07 000000431 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 17:28:48.528 -07 000000431 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:48.578 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 17:28:48.578 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:48.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:48.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:48.578 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:48.578 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:48.578 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:48.578 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:48.588 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:48.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:48.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:48.588 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:48.598 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:28:48.598 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:28:48.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:48.638 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:48.838 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:48.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:48.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:48.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-17 17:28:48.878 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:48.878 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:48.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:28:48.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:28:48.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:48.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:28:48.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:28:48.978 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:48.978 -07 000000429 INF: Autofocus start
17-03-17 17:28:48.978 -07 000000429 INF: MeasureProfile start
17-03-17 17:28:48.978 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:48.988 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:48.988 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:48.988 -07 000000429 INF: MeasureProfile done
17-03-17 17:28:48.988 -07 000000429 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:28:48.988 -07 000000429 INF: Autofocus finished
17-03-17 17:28:49.188 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:49.188 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:49.188 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138330418644491. ----------
17-03-17 17:28:49.188 -07 000000610 INF: Cycle	1	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:49.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28708, sync = True, waitForSettling = True)
17-03-17 17:28:49.198 -07 000000610 INF: Z Motor: Moving to -0.131417 mm, started at -0.138330 mm, distance = 6.91 um
17-03-17 17:28:49.198 -07 000000610 INF: FPGA: Xmit ZDACW 28708\n [Z Motor]
17-03-17 17:28:49.198 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:28:49.208 -07 000000610 INF: FPGA: 'ZDACW 28708' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:49.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:49.208 -07 000000462 INF: FPGA: Recv ZDACR 28708
17-03-17 17:28:49.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:49.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.368 -07 000000618 INF: FPGA: Recv ZSGSRD 29754
17-03-17 17:28:49.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.378 -07 000000433 INF: FPGA: Recv ZSGSRD 29747
17-03-17 17:28:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.388 -07 000000429 INF: FPGA: Recv ZSGSRD 29747
17-03-17 17:28:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.398 -07 000000569 INF: FPGA: Recv ZSGSRD 29750
17-03-17 17:28:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29746
17-03-17 17:28:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.418 -07 000000382 INF: FPGA: Recv ZSGSRD 29750
17-03-17 17:28:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.428 -07 000000632 INF: FPGA: Recv ZSGSRD 29737
17-03-17 17:28:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.438 -07 000000569 INF: FPGA: Recv ZSGSRD 29746
17-03-17 17:28:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.448 -07 000000480 INF: FPGA: Recv ZSGSRD 29747
17-03-17 17:28:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:49.458 -07 000000482 INF: FPGA: Recv ZSGSRD 29749
17-03-17 17:28:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:49.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:49.468 -07 000000618 INF: FPGA: Recv ZPIEZORD 25278
17-03-17 17:28:49.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:49.478 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.8 V.
17-03-17 17:28:49.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29747 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29747 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29737 (-130.6 uncal um), Max = 29754 (-130.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:28:49.478 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29747, posNoise = 7, negNoise = 10
17-03-17 17:28:49.478 -07 000000610 INF: Z Motor: After move to -0.131417, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:49.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:28:49.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:49.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:49.478 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:49.478 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:49.478 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:49.478 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:49.478 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:49.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:49.478 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:49.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:49.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:49.478 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:49.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:49.478 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:49.488 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:28:49.488 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:49.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:28:49.488 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:28:49.488 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:28:49.488 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:49.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28885 150\n [Camera]
17-03-17 17:28:49.698 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:50.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:50.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:50.088 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:50.088 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:50.088 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) start.
17-03-17 17:28:50.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:50.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:50.088 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:50.088 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:50.088 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:28:50.278 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28885 775
17-03-17 17:28:50.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:50.458 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:28:50.468 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:28:50.468 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:50.468 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1487161104, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:28:50.468 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:28:50.468 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:50.468 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:50.468 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:50.468 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:28:50.478 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:28:50.618 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:50.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:50.618 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:50.618 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:50.618 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:28:50.618 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:50.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:50.618 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:50.618 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:50.618 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 17:28:50.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 17:28:50.808 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:50.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28885 150' command took 2 ms to send, 1308 ms to get response, and 1316 ms overall
17-03-17 17:28:50.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:28:50.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.131424390592098. ------
17-03-17 17:28:50.818 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:50.818 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13823 mm
17-03-17 17:28:50.818 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:50.818 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:28:50.818 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 17:28:50.818 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30196, sync = True, waitForSettling = False)
17-03-17 17:28:50.818 -07 000000569 INF: Z Motor: Moving to -0.138228 mm, started at -0.131424 mm, distance = -6.80 um
17-03-17 17:28:50.818 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:50.828 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:28:50.948 -07 000000569 INF: FPGA: Xmit ZDACW 30196\n [Z Motor]
17-03-17 17:28:50.948 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:28:50.958 -07 000000569 INF: FPGA: 'ZDACW 30196' command took 0 ms to send, 0 ms to get response, and 133 ms overall
17-03-17 17:28:50.958 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:50.958 -07 000000462 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:28:50.968 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-17 17:28:50.968 -07 000000551 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:50.968 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:50.968 -07 000000551 INF: Y Motor: Moving 1341 steps-18
17-03-17 17:28:50.988 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:50.998 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:50.998 -07 000000431 INF: FPGA: Recv ZDACR 30196
17-03-17 17:28:51.008 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:51.008 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 49 ms overall
17-03-17 17:28:51.008 -07 000000569 INF: Z Motor: MoveAbsStepped took 184 ms (did NOT wait for settling yet))
17-03-17 17:28:51.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:28:51.008 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:28:51.008 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:51.018 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:28:51.018 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:28:51.018 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:51.018 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:51.018 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:28:51.018 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:28:51.028 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:28:51.188 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:51.188 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 238 ms overall
17-03-17 17:28:51.298 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.200077,
17-03-17 17:28:51.388 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 17:28:51.388 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 418 ms overall
17-03-17 17:28:51.418 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:51.418 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 17:28:51.428 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:51.428 -07 000000551 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:51.428 -07 000000551 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 17:28:51.428 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 418 ms, distance = 0.839 mm, average velocity = 2.006 mm/sec
17-03-17 17:28:51.498 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:52.378 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:52.378 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 17:28:52.388 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:52.388 -07 000000551 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:52.398 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:52.398 -07 000000551 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:28:52.398 -07 000000551 INF: Y Motor: Moved to 62.3955 after 1581 ms (table move)
17-03-17 17:28:52.408 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138228 mm (DAC = 30196)
17-03-17 17:28:52.408 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.408 -07 000000551 INF: FPGA: Recv ZSGSRD 30798
17-03-17 17:28:52.418 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.418 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.418 -07 000000431 INF: FPGA: Recv ZSGSRD 30798
17-03-17 17:28:52.428 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.428 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.428 -07 000000429 INF: FPGA: Recv ZSGSRD 30802
17-03-17 17:28:52.438 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.438 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.438 -07 000000382 INF: FPGA: Recv ZSGSRD 30808
17-03-17 17:28:52.448 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.448 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.448 -07 000000431 INF: FPGA: Recv ZSGSRD 30805
17-03-17 17:28:52.458 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.458 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30811
17-03-17 17:28:52.468 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.468 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.468 -07 000000431 INF: FPGA: Recv ZSGSRD 30814
17-03-17 17:28:52.478 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.478 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.478 -07 000000382 INF: FPGA: Recv ZSGSRD 30816
17-03-17 17:28:52.488 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.488 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.488 -07 000000551 INF: FPGA: Recv ZSGSRD 30806
17-03-17 17:28:52.498 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:52.498 -07 000000382 INF: FPGA: Recv ZSGSRD 30801
17-03-17 17:28:52.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.508 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:52.508 -07 000000561 INF: FPGA: Recv ZPIEZORD 26723
17-03-17 17:28:52.518 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:52.518 -07 000000480 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -9.0 V.
17-03-17 17:28:52.518 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30806 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30806 (-137.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30798 (-137.4 uncal um), Max = 30816 (-137.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:28:52.518 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30806, posNoise = 10, negNoise = 8
17-03-17 17:28:52.518 -07 000000480 INF: Z Motor: After move to -0.138228, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:52.518 -07 000000480 INF: Z Motor: Settle wait time = 1584 ms, measure time = 110 ms (allowed 150 ms), total time = 1694 ms
17-03-17 17:28:52.518 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 17:28:52.558 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-17 17:28:52.558 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:52.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:52.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:52.558 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:52.558 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:52.558 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:52.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:52.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:28:52.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:52.568 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:52.568 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:52.578 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:28:52.578 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:28:52.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:52.628 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:52.818 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:52.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:52.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:52.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:28:52.858 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:52.868 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:52.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 17:28:52.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:28:52.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:52.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:52.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:28:52.968 -07 000000618 INF: Autofocus start
17-03-17 17:28:52.968 -07 000000618 INF: MeasureProfile start
17-03-17 17:28:52.968 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:52.968 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:52.978 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:52.978 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:52.978 -07 000000618 INF: MeasureProfile done
17-03-17 17:28:52.978 -07 000000618 INF: X=-96  Z correction [um]=-0.4707136
17-03-17 17:28:52.978 -07 000000618 INF: Autofocus finished
17-03-17 17:28:53.178 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:53.178 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:53.178 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138227631250223. ----------
17-03-17 17:28:53.188 -07 000000610 INF: Cycle	1	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:53.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28605, sync = True, waitForSettling = True)
17-03-17 17:28:53.188 -07 000000610 INF: Z Motor: Moving to -0.130945 mm, started at -0.138228 mm, distance = 7.28 um
17-03-17 17:28:53.188 -07 000000610 INF: FPGA: Xmit ZDACW 28605\n [Z Motor]
17-03-17 17:28:53.188 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:28:53.198 -07 000000610 INF: FPGA: 'ZDACW 28605' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:53.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:53.198 -07 000000561 INF: FPGA: Recv ZDACR 28605
17-03-17 17:28:53.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:53.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.358 -07 000000569 INF: FPGA: Recv ZSGSRD 29676
17-03-17 17:28:53.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:53.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.368 -07 000000429 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:28:53.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.378 -07 000000561 INF: FPGA: Recv ZSGSRD 29669
17-03-17 17:28:53.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29670
17-03-17 17:28:53.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.398 -07 000000618 INF: FPGA: Recv ZSGSRD 29678
17-03-17 17:28:53.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.408 -07 000000551 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:28:53.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29676
17-03-17 17:28:53.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.428 -07 000000480 INF: FPGA: Recv ZSGSRD 29671
17-03-17 17:28:53.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.438 -07 000000458 INF: FPGA: Recv ZSGSRD 29675
17-03-17 17:28:53.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:53.448 -07 000000551 INF: FPGA: Recv ZSGSRD 29673
17-03-17 17:28:53.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:53.458 -07 000000561 INF: FPGA: Recv ZPIEZORD 25221
17-03-17 17:28:53.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:53.468 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.8 V.
17-03-17 17:28:53.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29669 (-130.1 uncal um), Max = 29678 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:28:53.468 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 4, negNoise = 5
17-03-17 17:28:53.468 -07 000000610 INF: Z Motor: After move to -0.130945, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:53.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:28:53.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:53.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:53.468 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:53.468 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:53.468 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:53.468 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:53.468 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:53.468 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:53.468 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:28:53.468 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:53.468 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:53.468 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:53.478 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:28:53.478 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:53.478 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:53.478 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:53.488 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:28:53.488 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:28:53.488 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:28:53.488 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:28:53.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28782 150\n [Camera]
17-03-17 17:28:53.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:54.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:54.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:54.078 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:54.078 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:54.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:54.078 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:54.088 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:54.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:28:54.088 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:54.088 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:28:54.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28782 775
17-03-17 17:28:54.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:54.458 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:28:54.458 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:28:54.458 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:54.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 17:28:54.458 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:28:54.458 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:54.458 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:54.458 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:28:54.458 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:54.468 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:28:54.608 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:54.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:54.608 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:54.608 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:54.608 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:28:54.618 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:54.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:54.618 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:54.618 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:54.618 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1103629984, 0x0, 418435064) start.
17-03-17 17:28:54.798 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:28:54.798 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:54.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28782 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:28:54.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:28:54.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.13095542310575. ------
17-03-17 17:28:54.808 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:54.808 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13776 mm
17-03-17 17:28:54.808 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:54.808 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:28:54.808 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 17:28:54.808 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30093, sync = True, waitForSettling = False)
17-03-17 17:28:54.808 -07 000000569 INF: Z Motor: Moving to -0.137757 mm, started at -0.130955 mm, distance = -6.80 um
17-03-17 17:28:54.808 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:54.938 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:54.938 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-17 17:28:54.938 -07 000000458 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:28:54.948 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:54.948 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 17:28:54.948 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:54.948 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:54.948 -07 000000382 INF: Y Motor: Moving 1339 steps-15
17-03-17 17:28:54.958 -07 000000569 INF: FPGA: Xmit ZDACW 30093\n [Z Motor]
17-03-17 17:28:54.958 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:28:54.968 -07 000000569 INF: FPGA: 'ZDACW 30093' command took 0 ms to send, 0 ms to get response, and 153 ms overall
17-03-17 17:28:54.968 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:54.978 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:54.978 -07 000000433 INF: FPGA: Recv ZDACR 30093
17-03-17 17:28:54.988 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:54.988 -07 000000569 INF: Z Motor: MoveAbsStepped took 174 ms (did NOT wait for settling yet))
17-03-17 17:28:54.998 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1103629984, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:28:54.998 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:28:54.998 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:55.008 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:55.008 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:28:55.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 17:28:55.008 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:28:55.008 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:55.018 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:28:55.018 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 17:28:55.148 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:55.148 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 17:28:55.338 -07 000000632 INF: FPGA: Recv YMVTILE
17-03-17 17:28:55.338 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-17 17:28:55.378 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:55.378 -07 000000618 INF: FPGA: Recv YRDPOS 129483
17-03-17 17:28:55.388 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:55.388 -07 000000382 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:55.388 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:28:55.388 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 17:28:56.338 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:56.338 -07 000000618 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:28:56.348 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.348 -07 000000382 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:56.368 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:28:56.368 -07 000000382 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:28:56.368 -07 000000382 INF: Y Motor: Moved to 63.2246 after 1557 ms (table move)
17-03-17 17:28:56.368 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137757 mm (DAC = 30093)
17-03-17 17:28:56.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.378 -07 000000480 INF: FPGA: Recv ZSGSRD 30733
17-03-17 17:28:56.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:28:56.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.388 -07 000000458 INF: FPGA: Recv ZSGSRD 30740
17-03-17 17:28:56.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.418 -07 000000551 INF: FPGA: Recv ZSGSRD 30727
17-03-17 17:28:56.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:56.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.438 -07 000000382 INF: FPGA: Recv ZSGSRD 30734
17-03-17 17:28:56.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:56.448 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.448 -07 000000433 INF: FPGA: Recv ZSGSRD 30733
17-03-17 17:28:56.458 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.468 -07 000000569 INF: FPGA: Recv ZSGSRD 30727
17-03-17 17:28:56.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:28:56.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.478 -07 000000433 INF: FPGA: Recv ZSGSRD 30733
17-03-17 17:28:56.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.488 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.488 -07 000000551 INF: FPGA: Recv ZSGSRD 30739
17-03-17 17:28:56.498 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.498 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.498 -07 000000433 INF: FPGA: Recv ZSGSRD 30724
17-03-17 17:28:56.498 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:28:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:28:56.508 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.508 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:56.508 -07 000000569 INF: FPGA: Recv ZSGSRD 30728
17-03-17 17:28:56.518 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.518 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:56.518 -07 000000569 INF: FPGA: Recv ZPIEZORD 26652
17-03-17 17:28:56.528 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:56.528 -07 000000502 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.0 V.
17-03-17 17:28:56.528 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30732 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30733 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30724 (-136.9 uncal um), Max = 30740 (-137.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:28:56.528 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30732, posNoise = 8, negNoise = 8
17-03-17 17:28:56.528 -07 000000502 INF: Z Motor: After move to -0.137757, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:56.528 -07 000000502 INF: Z Motor: Settle wait time = 1559 ms, measure time = 155 ms (allowed 150 ms), total time = 1714 ms
17-03-17 17:28:56.528 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 17:28:56.528 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1718 ms
17-03-17 17:28:56.528 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:28:56.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:56.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:56.528 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:56.528 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:28:56.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:56.528 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:56.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:56.528 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:28:56.538 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:28:56.538 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:28:56.548 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:28:56.548 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:28:56.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:28:56.598 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:28:56.688 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.191946,
17-03-17 17:28:56.788 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:28:56.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:28:56.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:28:56.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:28:56.828 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:28:56.838 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:28:56.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 17:28:56.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 17:28:56.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:56.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:28:56.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 17:28:56.938 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:56.938 -07 000000502 INF: Autofocus start
17-03-17 17:28:56.938 -07 000000502 INF: MeasureProfile start
17-03-17 17:28:56.938 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:56.948 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:28:56.948 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:28:56.958 -07 000000502 INF: MeasureProfile done
17-03-17 17:28:56.958 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:28:56.958 -07 000000502 INF: Autofocus finished
17-03-17 17:28:57.148 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:28:57.148 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:28:57.148 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.137752239551733. ----------
17-03-17 17:28:57.148 -07 000000610 INF: Cycle	1	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:28:57.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28600, sync = True, waitForSettling = True)
17-03-17 17:28:57.158 -07 000000610 INF: Z Motor: Moving to -0.130922 mm, started at -0.137752 mm, distance = 6.83 um
17-03-17 17:28:57.158 -07 000000610 INF: FPGA: Xmit ZDACW 28600\n [Z Motor]
17-03-17 17:28:57.158 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:28:57.168 -07 000000610 INF: FPGA: 'ZDACW 28600' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:28:57.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:57.168 -07 000000551 INF: FPGA: Recv ZDACR 28600
17-03-17 17:28:57.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:28:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.328 -07 000000502 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:28:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:28:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.338 -07 000000569 INF: FPGA: Recv ZSGSRD 29675
17-03-17 17:28:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.348 -07 000000433 INF: FPGA: Recv ZSGSRD 29669
17-03-17 17:28:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.358 -07 000000569 INF: FPGA: Recv ZSGSRD 29670
17-03-17 17:28:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.368 -07 000000551 INF: FPGA: Recv ZSGSRD 29670
17-03-17 17:28:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.378 -07 000000502 INF: FPGA: Recv ZSGSRD 29671
17-03-17 17:28:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.388 -07 000000551 INF: FPGA: Recv ZSGSRD 29665
17-03-17 17:28:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.398 -07 000000502 INF: FPGA: Recv ZSGSRD 29672
17-03-17 17:28:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.408 -07 000000551 INF: FPGA: Recv ZSGSRD 29669
17-03-17 17:28:57.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:28:57.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29675
17-03-17 17:28:57.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:28:57.428 -07 000000480 INF: FPGA: Recv ZPIEZORD 25262
17-03-17 17:28:57.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:57.438 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.7 V.
17-03-17 17:28:57.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29671 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29670 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29665 (-130.1 uncal um), Max = 29675 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:28:57.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29671, posNoise = 4, negNoise = 6
17-03-17 17:28:57.438 -07 000000610 INF: Z Motor: After move to -0.130922, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:28:57.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:28:57.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:28:57.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:28:57.438 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:28:57.438 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:28:57.438 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:28:57.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:28:57.438 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:28:57.438 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:28:57.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:28:57.438 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:28:57.438 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:28:57.438 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:28:57.448 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:28:57.448 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:28:57.448 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:28:57.448 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:28:57.458 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:28:57.458 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:28:57.458 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:28:57.458 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:28:57.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28777 150\n [Camera]
17-03-17 17:28:57.658 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:28:58.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:28:58.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:28:58.048 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:58.048 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:28:58.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:28:58.048 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:58.048 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:58.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1139052248, 0x0, 418435064) start.
17-03-17 17:28:58.048 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:58.048 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:28:58.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28777 775
17-03-17 17:28:58.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:28:58.428 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:28:58.428 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:28:58.428 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:58.428 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1139052248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:28:58.428 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:28:58.428 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:58.428 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:28:58.428 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:28:58.428 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:28:58.438 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:28:58.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:28:58.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:28:58.578 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:28:58.578 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:28:58.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:28:58.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:28:58.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:28:58.578 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:28:58.578 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:28:58.578 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:28:58.768 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:28:58.768 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:28:58.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28777 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:28:58.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:28:58.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.130936150469324. ------
17-03-17 17:28:58.778 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13773 mm
17-03-17 17:28:58.778 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:28:58.778 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:28:58.778 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:28:58.778 -07 000000431 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 17:28:58.778 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30088, sync = True, waitForSettling = False)
17-03-17 17:28:58.778 -07 000000502 INF: Z Motor: Moving to -0.137734 mm, started at -0.130936 mm, distance = -6.80 um
17-03-17 17:28:58.778 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:28:58.788 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:28:58.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:58.788 -07 000000480 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:28:58.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:28:58.798 -07 000000431 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:58.798 -07 000000431 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:28:58.798 -07 000000431 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:28:58.798 -07 000000502 INF: FPGA: Xmit ZDACW 30088\n [Z Motor]
17-03-17 17:28:58.798 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:28:58.808 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:28:58.808 -07 000000502 INF: FPGA: 'ZDACW 30088' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:28:58.818 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:28:58.828 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:28:58.828 -07 000000561 INF: FPGA: Recv ZDACR 30088
17-03-17 17:28:58.838 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:28:58.838 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:28:58.958 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:28:58.958 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:28:58.958 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:58.958 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:28:58.958 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:28:58.958 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:28:58.958 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:28:58.968 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:28:58.968 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:28:58.968 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:28:59.008 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:28:59.008 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:28:59.188 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 17:28:59.188 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:28:59.228 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:28:59.228 -07 000000458 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:28:59.238 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:28:59.238 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:28:59.238 -07 000000431 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:28:59.238 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 17:29:00.188 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:00.188 -07 000000482 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:29:00.198 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:00.198 -07 000000431 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:00.208 -07 000000431 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:00.208 -07 000000431 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:29:00.208 -07 000000431 INF: Y Motor: Moved to 64.0576 after 1430 ms (table move)
17-03-17 17:29:00.208 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137734 mm (DAC = 30088)
17-03-17 17:29:00.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.218 -07 000000632 INF: FPGA: Recv ZSGSRD 30737
17-03-17 17:29:00.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:29:00.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.218 -07 000000482 INF: FPGA: Recv ZSGSRD 30729
17-03-17 17:29:00.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:00.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.228 -07 000000458 INF: FPGA: Recv ZSGSRD 30728
17-03-17 17:29:00.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.238 -07 000000431 INF: FPGA: Recv ZSGSRD 30728
17-03-17 17:29:00.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.248 -07 000000569 INF: FPGA: Recv ZSGSRD 30736
17-03-17 17:29:00.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.258 -07 000000482 INF: FPGA: Recv ZSGSRD 30736
17-03-17 17:29:00.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.268 -07 000000618 INF: FPGA: Recv ZSGSRD 30732
17-03-17 17:29:00.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.278 -07 000000431 INF: FPGA: Recv ZSGSRD 30728
17-03-17 17:29:00.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30721
17-03-17 17:29:00.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:00.298 -07 000000502 INF: FPGA: Recv ZSGSRD 30722
17-03-17 17:29:00.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.308 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:00.308 -07 000000429 INF: FPGA: Recv ZPIEZORD 26631
17-03-17 17:29:00.318 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:00.318 -07 000000433 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.0 V.
17-03-17 17:29:00.318 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30730 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30728 (-136.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30737 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:29:00.318 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30730, posNoise = 7, negNoise = 9
17-03-17 17:29:00.318 -07 000000433 INF: Z Motor: After move to -0.137734, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:00.318 -07 000000433 INF: Z Motor: Settle wait time = 1429 ms, measure time = 103 ms (allowed 150 ms), total time = 1532 ms
17-03-17 17:29:00.318 -07 000000433 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:00.368 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 17:29:00.368 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:00.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:00.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:00.368 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:00.368 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:00.368 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:00.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:00.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:00.368 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:00.368 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:00.368 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:00.388 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:29:00.388 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:29:00.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:00.438 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:00.638 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:00.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:00.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:00.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174474512, 0x0, 559484976) start.
17-03-17 17:29:00.668 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:00.678 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:00.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:29:00.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174474512, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 17:29:00.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:00.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:29:00.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 17:29:00.778 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:00.778 -07 000000502 INF: Autofocus start
17-03-17 17:29:00.778 -07 000000502 INF: MeasureProfile start
17-03-17 17:29:00.778 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:00.788 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:00.788 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:00.798 -07 000000502 INF: MeasureProfile done
17-03-17 17:29:00.798 -07 000000502 INF: X=-64  Z correction [um]=-0.3149434
17-03-17 17:29:00.798 -07 000000502 INF: Autofocus finished
17-03-17 17:29:00.988 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:00.988 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:00.988 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.137739391127449. ----------
17-03-17 17:29:00.998 -07 000000610 INF: Cycle	1	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:00.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28531, sync = True, waitForSettling = True)
17-03-17 17:29:00.998 -07 000000610 INF: Z Motor: Moving to -0.130607 mm, started at -0.137739 mm, distance = 7.13 um
17-03-17 17:29:00.998 -07 000000610 INF: FPGA: Xmit ZDACW 28531\n [Z Motor]
17-03-17 17:29:00.998 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:29:01.008 -07 000000610 INF: FPGA: 'ZDACW 28531' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:01.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:01.008 -07 000000462 INF: FPGA: Recv ZDACR 28531
17-03-17 17:29:01.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:01.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.168 -07 000000482 INF: FPGA: Recv ZSGSRD 29618
17-03-17 17:29:01.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.178 -07 000000382 INF: FPGA: Recv ZSGSRD 29621
17-03-17 17:29:01.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29617
17-03-17 17:29:01.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29626
17-03-17 17:29:01.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.208 -07 000000482 INF: FPGA: Recv ZSGSRD 29618
17-03-17 17:29:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.218 -07 000000569 INF: FPGA: Recv ZSGSRD 29630
17-03-17 17:29:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29614
17-03-17 17:29:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.238 -07 000000569 INF: FPGA: Recv ZSGSRD 29623
17-03-17 17:29:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.248 -07 000000569 INF: FPGA: Recv ZSGSRD 29626
17-03-17 17:29:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:01.268 -07 000000502 INF: FPGA: Recv ZSGSRD 29616
17-03-17 17:29:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:29:01.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:01.268 -07 000000618 INF: FPGA: Recv ZPIEZORD 25194
17-03-17 17:29:01.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:01.278 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.7 V.
17-03-17 17:29:01.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29621 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29620 (-129.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29614 (-129.8 uncal um), Max = 29630 (-129.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:29:01.278 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29621, posNoise = 9, negNoise = 7
17-03-17 17:29:01.278 -07 000000610 INF: Z Motor: After move to -0.130607, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:01.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:29:01.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:01.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:01.278 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:01.278 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:01.278 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:01.278 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:01.278 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:01.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:01.278 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:29:01.278 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:01.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:01.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:01.278 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:01.288 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:01.288 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:29:01.288 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:01.288 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:29:01.288 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:01.298 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:29:01.298 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:29:01.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28708 150\n [Camera]
17-03-17 17:29:01.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:01.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:01.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:01.888 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:01.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:01.888 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:01.888 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:01.888 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 17:29:01.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:01.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:01.888 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:01.888 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:01.888 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:29:02.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28708 775
17-03-17 17:29:02.098 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.202764,
17-03-17 17:29:02.228 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:02.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:29:02.268 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:29:02.268 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:02.268 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:29:02.268 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:29:02.268 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:02.268 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:02.268 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:29:02.268 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:02.278 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:29:02.418 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:02.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:02.418 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:02.418 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:02.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:29:02.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:02.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:02.418 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:02.418 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:02.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 17:29:02.608 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:29:02.608 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:02.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28708 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-17 17:29:02.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:02.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.130614939862236. ------
17-03-17 17:29:02.618 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:02.618 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13742 mm
17-03-17 17:29:02.618 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:02.618 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:29:02.618 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 17:29:02.618 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:02.618 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30019, sync = True, waitForSettling = False)
17-03-17 17:29:02.618 -07 000000541 INF: Z Motor: Moving to -0.137418 mm, started at -0.130615 mm, distance = -6.80 um
17-03-17 17:29:02.628 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:29:02.628 -07 000000541 INF: FPGA: Xmit ZDACW 30019\n [Z Motor]
17-03-17 17:29:02.628 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:29:02.638 -07 000000541 INF: FPGA: 'ZDACW 30019' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:02.638 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:02.638 -07 000000433 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:29:02.648 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:02.648 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:29:02.648 -07 000000618 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:02.648 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:02.648 -07 000000618 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:29:02.658 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:02.658 -07 000000433 INF: FPGA: Recv ZDACR 30019
17-03-17 17:29:02.668 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:29:02.668 -07 000000541 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 17:29:02.668 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:02.808 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:29:02.808 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:29:02.808 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:02.818 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:29:02.818 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:29:02.848 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:02.848 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:29:02.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:29:02.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 17:29:02.918 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:02.928 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:02.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 17:29:03.048 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:29:03.048 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 17:29:03.068 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:03.078 -07 000000433 INF: FPGA: Recv YRDPOS 132872
17-03-17 17:29:03.078 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:29:03.078 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:03.078 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:29:03.078 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.835 mm, average velocity = 2.087 mm/sec
17-03-17 17:29:04.028 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:04.028 -07 000000541 INF: FPGA: Recv YRDPOS 132872
17-03-17 17:29:04.038 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.038 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:04.058 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:04.058 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:04.058 -07 000000618 INF: Y Motor: Moved to 64.8789 after 1432 ms (table move)
17-03-17 17:29:04.058 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137418 mm (DAC = 30019)
17-03-17 17:29:04.058 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.058 -07 000000433 INF: FPGA: Recv ZSGSRD 30674
17-03-17 17:29:04.068 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:04.068 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.068 -07 000000382 INF: FPGA: Recv ZSGSRD 30674
17-03-17 17:29:04.078 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.078 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30688
17-03-17 17:29:04.088 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.088 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.088 -07 000000551 INF: FPGA: Recv ZSGSRD 30684
17-03-17 17:29:04.098 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.098 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.098 -07 000000541 INF: FPGA: Recv ZSGSRD 30674
17-03-17 17:29:04.108 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.108 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.108 -07 000000618 INF: FPGA: Recv ZSGSRD 30679
17-03-17 17:29:04.118 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.118 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.118 -07 000000541 INF: FPGA: Recv ZSGSRD 30683
17-03-17 17:29:04.128 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.128 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.128 -07 000000632 INF: FPGA: Recv ZSGSRD 30682
17-03-17 17:29:04.138 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.138 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.138 -07 000000482 INF: FPGA: Recv ZSGSRD 30682
17-03-17 17:29:04.148 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.148 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:04.148 -07 000000541 INF: FPGA: Recv ZSGSRD 30686
17-03-17 17:29:04.158 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.158 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:04.158 -07 000000482 INF: FPGA: Recv ZPIEZORD 26590
17-03-17 17:29:04.168 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.168 -07 000000458 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -9.0 V.
17-03-17 17:29:04.168 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30681 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30682 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30674 (-136.6 uncal um), Max = 30688 (-136.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:29:04.168 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30681, posNoise = 7, negNoise = 7
17-03-17 17:29:04.168 -07 000000458 INF: Z Motor: After move to -0.137418, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:04.168 -07 000000458 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-17 17:29:04.168 -07 000000458 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:04.218 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 17:29:04.218 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:04.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:04.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:04.218 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:04.218 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:04.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:04.218 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:04.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:04.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:04.228 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:04.228 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:04.238 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:29:04.238 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:29:04.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:04.288 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:04.478 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:04.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:04.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:04.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:04.518 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:04.518 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:04.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:29:04.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 17:29:04.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:04.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:04.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 17:29:04.628 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:04.628 -07 000000458 INF: Autofocus start
17-03-17 17:29:04.628 -07 000000458 INF: MeasureProfile start
17-03-17 17:29:04.628 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:04.638 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:04.638 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:04.638 -07 000000458 INF: MeasureProfile done
17-03-17 17:29:04.638 -07 000000458 INF: X=-64  Z correction [um]=-0.3149434
17-03-17 17:29:04.638 -07 000000458 INF: Autofocus finished
17-03-17 17:29:04.838 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:04.838 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:04.838 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137424604732503. ----------
17-03-17 17:29:04.838 -07 000000610 INF: Cycle	1	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:04.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28463, sync = True, waitForSettling = True)
17-03-17 17:29:04.848 -07 000000610 INF: Z Motor: Moving to -0.130295 mm, started at -0.137425 mm, distance = 7.13 um
17-03-17 17:29:04.848 -07 000000610 INF: FPGA: Xmit ZDACW 28463\n [Z Motor]
17-03-17 17:29:04.848 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:29:04.858 -07 000000610 INF: FPGA: 'ZDACW 28463' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:04.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:04.858 -07 000000482 INF: FPGA: Recv ZDACR 28463
17-03-17 17:29:04.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:04.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:05.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29570
17-03-17 17:29:05.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:05.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.028 -07 000000382 INF: FPGA: Recv ZSGSRD 29570
17-03-17 17:29:05.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.038 -07 000000561 INF: FPGA: Recv ZSGSRD 29578
17-03-17 17:29:05.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29569
17-03-17 17:29:05.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.058 -07 000000431 INF: FPGA: Recv ZSGSRD 29571
17-03-17 17:29:05.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.068 -07 000000382 INF: FPGA: Recv ZSGSRD 29576
17-03-17 17:29:05.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.078 -07 000000551 INF: FPGA: Recv ZSGSRD 29571
17-03-17 17:29:05.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29573
17-03-17 17:29:05.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.098 -07 000000618 INF: FPGA: Recv ZSGSRD 29566
17-03-17 17:29:05.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:05.108 -07 000000561 INF: FPGA: Recv ZSGSRD 29574
17-03-17 17:29:05.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:05.118 -07 000000618 INF: FPGA: Recv ZPIEZORD 25165
17-03-17 17:29:05.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:05.128 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.7 V.
17-03-17 17:29:05.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29572 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29571 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29566 (-129.5 uncal um), Max = 29578 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:29:05.128 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29572, posNoise = 6, negNoise = 6
17-03-17 17:29:05.128 -07 000000610 INF: Z Motor: After move to -0.130295, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:05.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:29:05.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:05.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:05.128 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:05.128 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:05.128 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:05.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:05.128 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:05.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:05.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:05.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:05.128 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:05.138 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:05.138 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:05.138 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:05.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:29:05.138 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:05.148 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:29:05.148 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:29:05.148 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:29:05.148 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:05.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28639 150\n [Camera]
17-03-17 17:29:05.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:05.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:05.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:05.738 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:05.738 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:05.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:05.738 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:05.748 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:05.748 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:29:05.748 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:05.748 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:29:06.118 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:29:06.118 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:29:06.118 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:06.118 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:06.118 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:29:06.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:29:06.118 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:29:06.118 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:06.128 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:06.138 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:29:06.148 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28639 775
17-03-17 17:29:06.148 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:06.268 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 17:29:06.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 17:29:06.278 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:06.278 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:06.278 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:29:06.658 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:29:06.658 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:29:06.658 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:06.658 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:29:06.658 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:29:06.668 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-17 17:29:06.668 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:29:06.668 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:06.668 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:06.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28639 150' command took 3 ms to send, 1517 ms to get response, and 1521 ms overall
17-03-17 17:29:06.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-17 17:29:06.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:06.668 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:06.668 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:06.668 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1103629984, 0x0, 418435064) start.
17-03-17 17:29:06.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:06.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.13030015346729. ------
17-03-17 17:29:07.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1103629984, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:29:07.058 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:29:07.058 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:07.058 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:29:07.068 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:29:07.078 -07 000000632 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:07.078 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13710 mm
17-03-17 17:29:07.078 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:07.078 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:29:07.078 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 17:29:07.078 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29950, sync = True, waitForSettling = False)
17-03-17 17:29:07.078 -07 000000569 INF: Z Motor: Moving to -0.137102 mm, started at -0.130300 mm, distance = -6.80 um
17-03-17 17:29:07.078 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:07.088 -07 000000632 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:07.088 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:07.088 -07 000000431 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:29:07.098 -07 000000569 INF: FPGA: Xmit ZDACW 29950\n [Z Motor]
17-03-17 17:29:07.098 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:29:07.098 -07 000000462 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:07.098 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:29:07.098 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:07.098 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:29:07.108 -07 000000632 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:07.108 -07 000000569 INF: FPGA: 'ZDACW 29950' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:29:07.118 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:07.128 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:07.128 -07 000000433 INF: FPGA: Recv ZDACR 29950
17-03-17 17:29:07.138 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:29:07.138 -07 000000569 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:29:07.308 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:07.308 -07 000000632 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:29:07.488 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:29:07.488 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:29:07.518 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:07.528 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 17:29:07.528 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:29:07.528 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:07.528 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:29:07.528 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 17:29:07.698 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.177011,
17-03-17 17:29:08.478 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:08.478 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 17:29:08.488 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:08.488 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:08.508 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:08.508 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:08.508 -07 000000462 INF: Y Motor: Moved to 65.7144 after 1425 ms (table move)
17-03-17 17:29:08.508 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137102 mm (DAC = 29950)
17-03-17 17:29:08.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:08.518 -07 000000458 INF: FPGA: Recv ZSGSRD 30630
17-03-17 17:29:08.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 17:29:08.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:08.518 -07 000000431 INF: FPGA: Recv ZSGSRD 30641
17-03-17 17:29:08.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:08.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:08.528 -07 000000462 INF: FPGA: Recv ZSGSRD 30639
17-03-17 17:29:08.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:08.538 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:08.538 -07 000000431 INF: FPGA: Recv ZSGSRD 30627
17-03-17 17:29:08.548 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:08.548 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:08.548 -07 000000632 INF: FPGA: Recv ZSGSRD 30642
17-03-17 17:29:08.558 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:08.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:08.558 -07 000000431 INF: FPGA: Recv ZSGSRD 30643
17-03-17 17:29:08.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:08.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:08.568 -07 000000462 INF: FPGA: Recv ZSGSRD 30638
17-03-17 17:29:08.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:08.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:09.518 -07 000000569 INF: FPGA: Recv ZSGSRD 30626
17-03-17 17:29:09.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 930 ms to get response, and 940 ms overall
17-03-17 17:29:09.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:09.518 -07 000000569 INF: FPGA: Recv ZSGSRD 30639
17-03-17 17:29:09.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:09.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:09.528 -07 000000569 INF: FPGA: Recv ZSGSRD 30635
17-03-17 17:29:09.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:09.538 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:09.538 -07 000000569 INF: FPGA: Recv ZPIEZORD 26532
17-03-17 17:29:09.548 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:09.548 -07 000000429 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -9.0 V.
17-03-17 17:29:09.548 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30636 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30638 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30626 (-136.3 uncal um), Max = 30643 (-136.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:29:09.548 -07 000000429 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30636, posNoise = 7, negNoise = 10
17-03-17 17:29:09.548 -07 000000429 INF: Z Motor: After move to -0.137102, error = -0.000033, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:09.548 -07 000000429 INF: Z Motor: Settle wait time = 1428 ms, measure time = 1034 ms (allowed 150 ms), total time = 2462 ms
17-03-17 17:29:09.548 -07 000000429 INF: Z Motor: Warning: Actual position measuring time = 1034 ms, longer than max expected time of 150 ms
17-03-17 17:29:09.548 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2466 ms
17-03-17 17:29:09.548 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:09.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:09.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:09.548 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:09.548 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:09.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:09.548 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:09.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:29:09.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:09.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:09.558 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:09.558 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:29:09.558 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:29:09.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:09.608 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:09.808 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:09.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:09.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:09.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:09.848 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:09.848 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:09.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:29:09.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:29:09.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:09.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:09.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:29:09.948 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:09.948 -07 000000431 INF: Autofocus start
17-03-17 17:29:09.948 -07 000000431 INF: MeasureProfile start
17-03-17 17:29:09.948 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:09.958 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:09.958 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:09.958 -07 000000431 INF: MeasureProfile done
17-03-17 17:29:09.958 -07 000000431 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 17:29:09.958 -07 000000431 INF: Autofocus finished
17-03-17 17:29:10.158 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:10.158 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:10.158 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137135515186124. ----------
17-03-17 17:29:10.158 -07 000000610 INF: Cycle	1	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:10.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28411, sync = True, waitForSettling = True)
17-03-17 17:29:10.168 -07 000000610 INF: Z Motor: Moving to -0.130057 mm, started at -0.137136 mm, distance = 7.08 um
17-03-17 17:29:10.168 -07 000000610 INF: FPGA: Xmit ZDACW 28411\n [Z Motor]
17-03-17 17:29:10.168 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:29:10.178 -07 000000610 INF: FPGA: 'ZDACW 28411' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:10.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:10.178 -07 000000382 INF: FPGA: Recv ZDACR 28411
17-03-17 17:29:10.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:10.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.338 -07 000000561 INF: FPGA: Recv ZSGSRD 29534
17-03-17 17:29:10.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:10.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.348 -07 000000382 INF: FPGA: Recv ZSGSRD 29540
17-03-17 17:29:10.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.358 -07 000000569 INF: FPGA: Recv ZSGSRD 29530
17-03-17 17:29:10.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29537
17-03-17 17:29:10.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.378 -07 000000569 INF: FPGA: Recv ZSGSRD 29539
17-03-17 17:29:10.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29533
17-03-17 17:29:10.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.398 -07 000000632 INF: FPGA: Recv ZSGSRD 29535
17-03-17 17:29:10.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.408 -07 000000462 INF: FPGA: Recv ZSGSRD 29536
17-03-17 17:29:10.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.418 -07 000000632 INF: FPGA: Recv ZSGSRD 29537
17-03-17 17:29:10.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:10.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29529
17-03-17 17:29:10.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:10.438 -07 000000632 INF: FPGA: Recv ZPIEZORD 25135
17-03-17 17:29:10.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:10.448 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.335 V. Piezo Error = -9.7 V.
17-03-17 17:29:10.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29535 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29536 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29529 (-129.2 uncal um), Max = 29540 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:29:10.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29535, posNoise = 5, negNoise = 6
17-03-17 17:29:10.448 -07 000000610 INF: Z Motor: After move to -0.130057, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:10.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:29:10.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:10.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:10.448 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:10.448 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:10.448 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:10.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:10.448 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:10.448 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:10.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:29:10.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:10.448 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:10.448 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:10.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:10.458 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:10.458 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:29:10.458 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:10.468 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:29:10.468 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:29:10.468 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:29:10.468 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:29:10.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28587 150\n [Camera]
17-03-17 17:29:10.668 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:11.058 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:11.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:11.058 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:11.058 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:11.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:11.058 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:11.058 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:11.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:29:11.068 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:11.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:29:11.248 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28587 775
17-03-17 17:29:11.398 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:11.458 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:29:11.458 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:29:11.458 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:11.458 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:11.468 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:29:11.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 17:29:11.468 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:29:11.468 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:11.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:29:11.478 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:29:11.498 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:11.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:11.588 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:11.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:11.588 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:11.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:11.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1139052248, 0x0, 391868352) start.
17-03-17 17:29:11.588 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:11.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:11.588 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:11.588 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:11.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:29:11.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:11.778 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:11.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28587 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:29:11.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:11.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130062457618045. ------
17-03-17 17:29:11.788 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:11.788 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13687 mm
17-03-17 17:29:11.788 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:11.788 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:29:11.788 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 17:29:11.788 -07 000000632 INF: Z Motor: Entering MoveAbsStepped (DAC = 29898, sync = True, waitForSettling = False)
17-03-17 17:29:11.788 -07 000000632 INF: Z Motor: Moving to -0.136864 mm, started at -0.130062 mm, distance = -6.80 um
17-03-17 17:29:11.798 -07 000000632 INF: FPGA: Xmit ZDACW 29898\n [Z Motor]
17-03-17 17:29:11.808 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:11.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1139052248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:29:11.988 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:29:11.988 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:11.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:29:11.998 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:29:11.998 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:11.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:11.998 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:29:11.998 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:29:12.008 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 17:29:12.018 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:12.018 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:29:12.018 -07 000000429 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:29:12.018 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 201 ms to get response, and 226 ms overall
17-03-17 17:29:12.018 -07 000000561 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:12.018 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 220 ms to get response, and 230 ms overall
17-03-17 17:29:12.018 -07 000000632 INF: FPGA: 'ZDACW 29898' command took 0 ms to send, 210 ms to get response, and 226 ms overall
17-03-17 17:29:12.018 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:12.018 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:12.018 -07 000000561 INF: Y Motor: Moving 1340 steps-17
17-03-17 17:29:12.028 -07 000000632 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:12.028 -07 000000541 INF: FPGA: Recv ZDACR 29898
17-03-17 17:29:12.038 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:12.038 -07 000000632 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:29:12.038 -07 000000632 INF: Z Motor: MoveAbsStepped took 245 ms (did NOT wait for settling yet))
17-03-17 17:29:12.218 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:12.218 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:29:12.418 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 17:29:12.418 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-17 17:29:12.448 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:12.448 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-17 17:29:12.458 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:12.458 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:12.458 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:29:12.458 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.117 mm/sec
17-03-17 17:29:13.078 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.139053,
17-03-17 17:29:13.408 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:13.408 -07 000000502 INF: FPGA: Recv YRDPOS 136272
17-03-17 17:29:13.418 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:13.418 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:13.438 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:13.438 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:13.438 -07 000000561 INF: Y Motor: Moved to 66.5391 after 1646 ms (table move)
17-03-17 17:29:13.438 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136864 mm (DAC = 29898)
17-03-17 17:29:13.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30605
17-03-17 17:29:13.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:13.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.448 -07 000000462 INF: FPGA: Recv ZSGSRD 30592
17-03-17 17:29:13.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.458 -07 000000462 INF: FPGA: Recv ZSGSRD 30598
17-03-17 17:29:13.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30601
17-03-17 17:29:13.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.478 -07 000000462 INF: FPGA: Recv ZSGSRD 30603
17-03-17 17:29:13.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.488 -07 000000462 INF: FPGA: Recv ZSGSRD 30600
17-03-17 17:29:13.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.498 -07 000000462 INF: FPGA: Recv ZSGSRD 30598
17-03-17 17:29:13.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.508 -07 000000462 INF: FPGA: Recv ZSGSRD 30588
17-03-17 17:29:13.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.518 -07 000000462 INF: FPGA: Recv ZSGSRD 30588
17-03-17 17:29:13.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:13.528 -07 000000462 INF: FPGA: Recv ZSGSRD 30598
17-03-17 17:29:13.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.538 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:13.538 -07 000000502 INF: FPGA: Recv ZPIEZORD 26523
17-03-17 17:29:13.548 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:13.548 -07 000000431 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.0 V.
17-03-17 17:29:13.548 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30597 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30598 (-136.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30588 (-136.0 uncal um), Max = 30605 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:29:13.548 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30597, posNoise = 8, negNoise = 9
17-03-17 17:29:13.548 -07 000000431 INF: Z Motor: After move to -0.136864, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:13.548 -07 000000431 INF: Z Motor: Settle wait time = 1649 ms, measure time = 106 ms (allowed 150 ms), total time = 1755 ms
17-03-17 17:29:13.548 -07 000000431 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:13.598 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1809 ms
17-03-17 17:29:13.598 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:13.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:13.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:13.598 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:13.598 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:13.598 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:13.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:13.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:29:13.598 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:13.608 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:13.608 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:13.608 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:29:13.608 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:29:13.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:13.658 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:13.858 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:13.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:13.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:13.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174474512, 0x0, 559484976) start.
17-03-17 17:29:13.898 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:13.898 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:13.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 17:29:13.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174474512, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:29:13.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:13.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:29:13.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:29:13.998 -07 000000632 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:13.998 -07 000000618 INF: Autofocus start
17-03-17 17:29:13.998 -07 000000618 INF: MeasureProfile start
17-03-17 17:29:13.998 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:14.008 -07 000000632 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:14.008 -07 000000632 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:14.008 -07 000000618 INF: MeasureProfile done
17-03-17 17:29:14.008 -07 000000618 INF: X=-96  Z correction [um]=-0.4707136
17-03-17 17:29:14.008 -07 000000618 INF: Autofocus finished
17-03-17 17:29:14.208 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:14.208 -07 000000632 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:14.208 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136884970912595. ----------
17-03-17 17:29:14.208 -07 000000610 INF: Cycle	1	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:14.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28308, sync = True, waitForSettling = True)
17-03-17 17:29:14.218 -07 000000610 INF: Z Motor: Moving to -0.129586 mm, started at -0.136885 mm, distance = 7.30 um
17-03-17 17:29:14.218 -07 000000610 INF: FPGA: Xmit ZDACW 28308\n [Z Motor]
17-03-17 17:29:14.218 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:29:14.228 -07 000000610 INF: FPGA: 'ZDACW 28308' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:14.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:14.228 -07 000000482 INF: FPGA: Recv ZDACR 28308
17-03-17 17:29:14.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:14.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.388 -07 000000569 INF: FPGA: Recv ZSGSRD 29462
17-03-17 17:29:14.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:14.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29462
17-03-17 17:29:14.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.408 -07 000000569 INF: FPGA: Recv ZSGSRD 29467
17-03-17 17:29:14.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:29:14.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.428 -07 000000502 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:29:14.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.438 -07 000000569 INF: FPGA: Recv ZSGSRD 29456
17-03-17 17:29:14.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29464
17-03-17 17:29:14.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29458
17-03-17 17:29:14.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.468 -07 000000502 INF: FPGA: Recv ZSGSRD 29460
17-03-17 17:29:14.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:14.478 -07 000000569 INF: FPGA: Recv ZSGSRD 29459
17-03-17 17:29:14.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:14.488 -07 000000502 INF: FPGA: Recv ZPIEZORD 25043
17-03-17 17:29:14.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:14.498 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.7 V.
17-03-17 17:29:14.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29461 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29456 (-128.8 uncal um), Max = 29467 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:29:14.498 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29461, posNoise = 6, negNoise = 5
17-03-17 17:29:14.498 -07 000000610 INF: Z Motor: After move to -0.129586, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:14.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:29:14.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:14.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:14.498 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:14.498 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:14.498 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:14.498 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:14.498 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:14.498 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:14.498 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:14.498 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:14.498 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:14.498 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:14.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:29:14.508 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:14.508 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:14.508 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:14.518 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 17:29:14.518 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 17:29:14.518 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 17:29:14.518 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:29:14.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28485 150\n [Camera]
17-03-17 17:29:14.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:15.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:15.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:15.108 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:15.108 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:15.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1450278672, 0x0, 391868352) start.
17-03-17 17:29:15.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:15.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:15.118 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:15.228 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:15.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:29:15.308 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28485 775
17-03-17 17:29:15.458 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:15.508 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1450278672, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 17:29:15.508 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:29:15.508 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:15.508 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:15.508 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:29:15.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:29:15.608 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:29:15.608 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:15.618 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:15.618 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 17:29:15.638 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:15.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:15.648 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:15.648 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:15.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:15.648 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:15.648 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:15.648 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1485700936, 0x0, 418435064) start.
17-03-17 17:29:15.648 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:15.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:29:15.838 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:15.838 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:15.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28485 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-17 17:29:15.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:15.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.129587065919555. ------
17-03-17 17:29:15.838 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:15.838 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13639 mm
17-03-17 17:29:15.838 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:15.848 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:29:15.848 -07 000000551 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 17:29:15.848 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:16.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1485700936, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 17:29:16.048 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:29:16.048 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:16.048 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:29:16.048 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:29:16.048 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:16.058 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:16.058 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:16.058 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 17:29:16.058 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:29:16.068 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29795, sync = True, waitForSettling = False)
17-03-17 17:29:16.068 -07 000000569 INF: Z Motor: Moving to -0.136393 mm, started at -0.129587 mm, distance = -6.81 um
17-03-17 17:29:16.068 -07 000000569 INF: FPGA: Xmit ZDACW 29795\n [Z Motor]
17-03-17 17:29:16.758 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:16.758 -07 000000458 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:29:16.758 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:29:16.758 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:16.758 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 900 ms to get response, and 909 ms overall
17-03-17 17:29:16.758 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 910 ms to get response, and 914 ms overall
17-03-17 17:29:16.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:16.758 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:16.758 -07 000000569 INF: FPGA: 'ZDACW 29795' command took 0 ms to send, 680 ms to get response, and 682 ms overall
17-03-17 17:29:16.758 -07 000000551 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:16.758 -07 000000551 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:16.758 -07 000000551 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:29:16.768 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:16.768 -07 000000458 INF: FPGA: Recv ZDACR 29795
17-03-17 17:29:16.778 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:29:16.778 -07 000000569 INF: Z Motor: MoveAbsStepped took 701 ms (did NOT wait for settling yet))
17-03-17 17:29:16.778 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:16.958 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:16.958 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:29:17.148 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 17:29:17.148 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 17:29:17.178 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:17.188 -07 000000482 INF: FPGA: Recv YRDPOS 137978
17-03-17 17:29:17.188 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:29:17.188 -07 000000551 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:17.188 -07 000000551 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 17:29:17.188 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-17 17:29:18.138 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:18.138 -07 000000482 INF: FPGA: Recv YRDPOS 137978
17-03-17 17:29:18.148 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.148 -07 000000551 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:18.168 -07 000000551 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:18.168 -07 000000551 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:18.168 -07 000000551 INF: Y Motor: Moved to 67.3721 after 2322 ms (table move)
17-03-17 17:29:18.168 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136393 mm (DAC = 29795)
17-03-17 17:29:18.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.178 -07 000000482 INF: FPGA: Recv ZSGSRD 30519
17-03-17 17:29:18.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:29:18.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.188 -07 000000569 INF: FPGA: Recv ZSGSRD 30519
17-03-17 17:29:18.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.198 -07 000000482 INF: FPGA: Recv ZSGSRD 30517
17-03-17 17:29:18.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30532
17-03-17 17:29:18.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.218 -07 000000458 INF: FPGA: Recv ZSGSRD 30526
17-03-17 17:29:18.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.228 -07 000000433 INF: FPGA: Recv ZSGSRD 30521
17-03-17 17:29:18.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.238 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.238 -07 000000569 INF: FPGA: Recv ZSGSRD 30520
17-03-17 17:29:18.248 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.248 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30518
17-03-17 17:29:18.258 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.258 -07 000000382 INF: FPGA: Recv ZSGSRD 30519
17-03-17 17:29:18.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.268 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:18.268 -07 000000561 INF: FPGA: Recv ZSGSRD 30515
17-03-17 17:29:18.278 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.278 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:18.278 -07 000000382 INF: FPGA: Recv ZPIEZORD 26439
17-03-17 17:29:18.288 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.288 -07 000000502 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.0 V.
17-03-17 17:29:18.288 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30521 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30519 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30515 (-135.6 uncal um), Max = 30532 (-135.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:29:18.288 -07 000000502 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30521, posNoise = 11, negNoise = 6
17-03-17 17:29:18.288 -07 000000502 INF: Z Motor: After move to -0.136393, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:18.288 -07 000000502 INF: Z Motor: Settle wait time = 2097 ms, measure time = 115 ms (allowed 150 ms), total time = 2212 ms
17-03-17 17:29:18.288 -07 000000502 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:18.328 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2483 ms
17-03-17 17:29:18.328 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:18.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:18.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:18.328 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:18.328 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:18.328 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:18.328 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:18.328 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:18.328 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:18.338 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:18.338 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:18.338 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:29:18.338 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:29:18.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:18.388 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:18.438 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.124123,
17-03-17 17:29:18.588 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:18.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:18.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:18.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:18.628 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:18.628 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:18.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:29:18.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:29:18.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:18.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:18.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:29:18.728 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:18.728 -07 000000541 INF: Autofocus start
17-03-17 17:29:18.728 -07 000000541 INF: MeasureProfile start
17-03-17 17:29:18.728 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:18.738 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:18.738 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:18.738 -07 000000541 INF: MeasureProfile done
17-03-17 17:29:18.748 -07 000000541 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:29:18.748 -07 000000541 INF: Autofocus finished
17-03-17 17:29:18.938 -07 000000632 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:18.938 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:18.938 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136396730789821. ----------
17-03-17 17:29:18.938 -07 000000610 INF: Cycle	1	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:18.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28290, sync = True, waitForSettling = True)
17-03-17 17:29:18.948 -07 000000610 INF: Z Motor: Moving to -0.129503 mm, started at -0.136397 mm, distance = 6.89 um
17-03-17 17:29:18.948 -07 000000610 INF: FPGA: Xmit ZDACW 28290\n [Z Motor]
17-03-17 17:29:18.948 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:29:18.958 -07 000000610 INF: FPGA: 'ZDACW 28290' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:18.958 -07 000000541 INF: FPGA: Recv ZDACR 28290
17-03-17 17:29:18.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:18.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.118 -07 000000541 INF: FPGA: Recv ZSGSRD 29446
17-03-17 17:29:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.128 -07 000000502 INF: FPGA: Recv ZSGSRD 29450
17-03-17 17:29:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.138 -07 000000541 INF: FPGA: Recv ZSGSRD 29445
17-03-17 17:29:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.148 -07 000000502 INF: FPGA: Recv ZSGSRD 29446
17-03-17 17:29:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.158 -07 000000541 INF: FPGA: Recv ZSGSRD 29451
17-03-17 17:29:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29444
17-03-17 17:29:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.178 -07 000000541 INF: FPGA: Recv ZSGSRD 29448
17-03-17 17:29:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.188 -07 000000433 INF: FPGA: Recv ZSGSRD 29447
17-03-17 17:29:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.198 -07 000000433 INF: FPGA: Recv ZSGSRD 29446
17-03-17 17:29:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:19.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29454
17-03-17 17:29:19.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:19.218 -07 000000382 INF: FPGA: Recv ZPIEZORD 25031
17-03-17 17:29:19.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:19.228 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.7 V.
17-03-17 17:29:19.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29448 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29446 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29444 (-128.7 uncal um), Max = 29454 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:29:19.228 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29448, posNoise = 6, negNoise = 4
17-03-17 17:29:19.228 -07 000000610 INF: Z Motor: After move to -0.129503, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:19.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:29:19.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:19.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:19.228 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:19.228 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:19.228 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:19.228 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:19.228 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:19.228 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:19.228 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:19.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:19.228 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:19.228 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:19.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:19.228 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:19.228 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:29:19.238 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:19.238 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:29:19.238 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:19.238 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:29:19.238 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:19.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28467 150\n [Camera]
17-03-17 17:29:19.448 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:19.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:19.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:19.838 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:19.838 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:19.838 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:29:19.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:19.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:19.838 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:19.958 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:19.958 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:29:20.028 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28467 775
17-03-17 17:29:20.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:20.228 -07 000000632 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 17:29:20.228 -07 000000632 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:29:20.228 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:20.228 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:20.228 -07 000000632 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:29:20.328 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:29:20.328 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:29:20.328 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:20.328 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:29:20.338 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-17 17:29:20.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:20.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:20.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:20.368 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:20.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1086754920, 0x0, 391868352) start.
17-03-17 17:29:20.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:20.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:20.368 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:20.368 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:20.368 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 1139052248, 0x0, 418435064) start.
17-03-17 17:29:20.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:29:20.558 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:20.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28467 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 17:29:20.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:20.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.129503551161712. ------
17-03-17 17:29:20.568 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:20.568 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13631 mm
17-03-17 17:29:20.568 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:20.568 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:29:20.568 -07 000000382 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 17:29:20.578 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:20.758 -07 000000632 INF: Camera: sBCa_ReadImage(785074704, 1139052248, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:29:20.758 -07 000000632 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:29:20.758 -07 000000632 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:20.758 -07 000000632 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:20.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1086754920, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:29:20.768 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:29:20.768 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:20.768 -07 000000632 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:29:20.768 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:29:20.768 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:29:20.778 -07 000000632 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:20.778 -07 000000632 INF: FPGA: Recv YRDPOS 137978
17-03-17 17:29:20.778 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 17:29:20.778 -07 000000382 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:20.778 -07 000000382 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:20.778 -07 000000382 INF: Y Motor: Moving 1345 steps-22
17-03-17 17:29:20.778 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 203 ms to get response, and 212 ms overall
17-03-17 17:29:20.778 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:20.778 -07 000000632 INF: Z Motor: Entering MoveAbsStepped (DAC = 29778, sync = True, waitForSettling = False)
17-03-17 17:29:20.778 -07 000000632 INF: Z Motor: Moving to -0.136315 mm, started at -0.129504 mm, distance = -6.81 um
17-03-17 17:29:20.788 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:20.798 -07 000000632 INF: FPGA: Xmit ZDACW 29778\n [Z Motor]
17-03-17 17:29:20.798 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:29:20.808 -07 000000632 INF: FPGA: 'ZDACW 29778' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:29:20.808 -07 000000632 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:20.808 -07 000000482 INF: FPGA: Recv ZDACR 29778
17-03-17 17:29:20.818 -07 000000632 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:20.818 -07 000000632 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 17:29:20.988 -07 000000632 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:20.988 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-17 17:29:21.158 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 17:29:21.158 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-17 17:29:21.188 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:21.188 -07 000000632 INF: FPGA: Recv YRDPOS 139684
17-03-17 17:29:21.198 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:21.198 -07 000000382 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:21.198 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 17:29:21.198 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-17 17:29:21.498 -07 000000632 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:21.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:22.148 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:22.148 -07 000000632 INF: FPGA: Recv YRDPOS 139684
17-03-17 17:29:22.158 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:22.158 -07 000000382 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:22.168 -07 000000382 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:22.168 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:22.168 -07 000000382 INF: Y Motor: Moved to 68.2051 after 1603 ms (table move)
17-03-17 17:29:22.178 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136315 mm (DAC = 29778)
17-03-17 17:29:22.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.178 -07 000000382 INF: FPGA: Recv ZSGSRD 30512
17-03-17 17:29:22.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:22.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30502
17-03-17 17:29:22.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.198 -07 000000382 INF: FPGA: Recv ZSGSRD 30514
17-03-17 17:29:22.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.208 -07 000000632 INF: FPGA: Recv ZSGSRD 30516
17-03-17 17:29:22.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.218 -07 000000482 INF: FPGA: Recv ZSGSRD 30508
17-03-17 17:29:22.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.228 -07 000000382 INF: FPGA: Recv ZSGSRD 30517
17-03-17 17:29:22.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.238 -07 000000382 INF: FPGA: Recv ZSGSRD 30502
17-03-17 17:29:22.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.248 -07 000000551 INF: FPGA: Recv ZSGSRD 30498
17-03-17 17:29:22.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.258 -07 000000382 INF: FPGA: Recv ZSGSRD 30500
17-03-17 17:29:22.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:22.268 -07 000000382 INF: FPGA: Recv ZSGSRD 30507
17-03-17 17:29:22.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.278 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:22.278 -07 000000382 INF: FPGA: Recv ZPIEZORD 26439
17-03-17 17:29:22.288 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.288 -07 000000561 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.0 V.
17-03-17 17:29:22.288 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30508 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30508 (-135.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30498 (-135.5 uncal um), Max = 30517 (-135.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:29:22.288 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30508, posNoise = 9, negNoise = 10
17-03-17 17:29:22.288 -07 000000561 INF: Z Motor: After move to -0.136315, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:22.288 -07 000000561 INF: Z Motor: Settle wait time = 1396 ms, measure time = 109 ms (allowed 150 ms), total time = 1505 ms
17-03-17 17:29:22.288 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:22.338 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1769 ms
17-03-17 17:29:22.338 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:22.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:22.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:22.338 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:22.338 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:22.338 -07 000000632 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:22.338 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:22.348 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:29:22.348 -07 000000632 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:22.348 -07 000000632 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:22.348 -07 000000632 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:22.348 -07 000000632 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:29:22.348 -07 000000632 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:29:22.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:22.398 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:22.598 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:22.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:22.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:22.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:22.638 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:22.638 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:22.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:29:22.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:29:22.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:22.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:22.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:29:22.738 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:22.738 -07 000000551 INF: Autofocus start
17-03-17 17:29:22.738 -07 000000551 INF: MeasureProfile start
17-03-17 17:29:22.738 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:22.748 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:29:22.748 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:22.758 -07 000000551 INF: MeasureProfile done
17-03-17 17:29:22.758 -07 000000551 INF: X=-128  Z correction [um]=-0.6264838
17-03-17 17:29:22.758 -07 000000551 INF: Autofocus finished
17-03-17 17:29:22.948 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:22.948 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:22.948 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136313216031978. ----------
17-03-17 17:29:22.948 -07 000000610 INF: Cycle	1	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:22.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28153, sync = True, waitForSettling = True)
17-03-17 17:29:22.958 -07 000000610 INF: Z Motor: Moving to -0.128876 mm, started at -0.136313 mm, distance = 7.44 um
17-03-17 17:29:22.958 -07 000000610 INF: FPGA: Xmit ZDACW 28153\n [Z Motor]
17-03-17 17:29:22.958 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:29:22.968 -07 000000610 INF: FPGA: 'ZDACW 28153' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:22.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:22.968 -07 000000482 INF: FPGA: Recv ZDACR 28153
17-03-17 17:29:22.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:22.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.128 -07 000000431 INF: FPGA: Recv ZSGSRD 29352
17-03-17 17:29:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.138 -07 000000551 INF: FPGA: Recv ZSGSRD 29357
17-03-17 17:29:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.148 -07 000000482 INF: FPGA: Recv ZSGSRD 29353
17-03-17 17:29:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29349
17-03-17 17:29:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.168 -07 000000482 INF: FPGA: Recv ZSGSRD 29352
17-03-17 17:29:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29349
17-03-17 17:29:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:29:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29350
17-03-17 17:29:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.208 -07 000000482 INF: FPGA: Recv ZSGSRD 29351
17-03-17 17:29:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.218 -07 000000561 INF: FPGA: Recv ZSGSRD 29353
17-03-17 17:29:23.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:23.228 -07 000000429 INF: FPGA: Recv ZSGSRD 29359
17-03-17 17:29:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:23.238 -07 000000382 INF: FPGA: Recv ZPIEZORD 24939
17-03-17 17:29:23.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:23.248 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.7 V.
17-03-17 17:29:23.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29352 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29352 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29349 (-128.1 uncal um), Max = 29359 (-128.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:29:23.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29352, posNoise = 7, negNoise = 3
17-03-17 17:29:23.248 -07 000000610 INF: Z Motor: After move to -0.128876, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:23.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:29:23.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:23.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:23.248 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:23.248 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:23.248 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:23.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:23.248 -07 000000632 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:23.248 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:23.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:23.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:23.248 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:23.248 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:23.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:23.248 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:23.258 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:29:23.258 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:23.258 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:29:23.268 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:23.268 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 17:29:23.268 -07 000000632 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:29:23.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28330 150\n [Camera]
17-03-17 17:29:23.468 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:23.808 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.130926,
17-03-17 17:29:23.858 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:23.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:23.858 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:23.858 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:23.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:29:23.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:23.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:23.868 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:23.868 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:23.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:29:24.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28330 775
17-03-17 17:29:24.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:24.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:29:24.258 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:29:24.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:24.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:29:24.258 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:29:24.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:24.258 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:24.258 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:29:24.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:24.268 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 17:29:24.388 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:24.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:24.388 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:24.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:24.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:24.498 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:24.498 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:24.498 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:29:24.508 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:24.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:29:24.578 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:24.578 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:24.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28330 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-17 17:29:24.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:24.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.128886826796103. ------
17-03-17 17:29:24.588 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:24.588 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13569 mm
17-03-17 17:29:24.588 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:24.588 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:29:24.588 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 17:29:24.588 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29641, sync = True, waitForSettling = False)
17-03-17 17:29:24.588 -07 000000431 INF: Z Motor: Moving to -0.135688 mm, started at -0.128887 mm, distance = -6.80 um
17-03-17 17:29:24.588 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:24.598 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:24.598 -07 000000431 INF: FPGA: Xmit ZDACW 29641\n [Z Motor]
17-03-17 17:29:24.598 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:29:24.608 -07 000000431 INF: FPGA: 'ZDACW 29641' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:29:24.608 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:24.608 -07 000000551 INF: FPGA: Recv YRDPOS 139684
17-03-17 17:29:24.618 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:24.618 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:29:24.618 -07 000000561 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:24.618 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:24.618 -07 000000561 INF: Y Motor: Moving 1340 steps-15
17-03-17 17:29:24.628 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:24.638 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:24.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:29:24.908 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:29:24.908 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:24.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 17:29:24.908 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:29:24.908 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:24.908 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:24.908 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 17:29:24.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:24.918 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 17:29:24.928 -07 000000480 INF: FPGA: Recv ZDACR 29641
17-03-17 17:29:24.928 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:24.928 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 292 ms to get response, and 322 ms overall
17-03-17 17:29:24.928 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 302 ms to get response, and 332 ms overall
17-03-17 17:29:24.928 -07 000000431 INF: Z Motor: MoveAbsStepped took 335 ms (did NOT wait for settling yet))
17-03-17 17:29:25.008 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:29:25.008 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:29:25.038 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:25.048 -07 000000431 INF: FPGA: Recv YRDPOS 141367
17-03-17 17:29:25.048 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:29:25.048 -07 000000561 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:25.048 -07 000000561 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 17:29:25.048 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 17:29:25.998 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:25.998 -07 000000482 INF: FPGA: Recv YRDPOS 141368
17-03-17 17:29:26.008 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:26.008 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:26.018 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:26.018 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:29:26.018 -07 000000561 INF: Y Motor: Moved to 69.0273 after 1433 ms (table move)
17-03-17 17:29:26.028 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135688 mm (DAC = 29641)
17-03-17 17:29:26.028 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.028 -07 000000480 INF: FPGA: Recv ZSGSRD 30414
17-03-17 17:29:26.038 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:26.038 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.038 -07 000000561 INF: FPGA: Recv ZSGSRD 30403
17-03-17 17:29:26.048 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.048 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.048 -07 000000480 INF: FPGA: Recv ZSGSRD 30419
17-03-17 17:29:26.058 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.058 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.058 -07 000000561 INF: FPGA: Recv ZSGSRD 30415
17-03-17 17:29:26.068 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.068 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.068 -07 000000482 INF: FPGA: Recv ZSGSRD 30417
17-03-17 17:29:26.078 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.078 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30414
17-03-17 17:29:26.088 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.088 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30412
17-03-17 17:29:26.098 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.098 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.098 -07 000000482 INF: FPGA: Recv ZSGSRD 30410
17-03-17 17:29:26.108 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.108 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.108 -07 000000482 INF: FPGA: Recv ZSGSRD 30405
17-03-17 17:29:26.118 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.118 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.118 -07 000000561 INF: FPGA: Recv ZSGSRD 30413
17-03-17 17:29:26.128 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.128 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:26.128 -07 000000561 INF: FPGA: Recv ZPIEZORD 26324
17-03-17 17:29:26.138 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.138 -07 000000433 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -9.0 V.
17-03-17 17:29:26.138 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30412 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30414 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30403 (-134.8 uncal um), Max = 30419 (-134.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:29:26.138 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30412, posNoise = 7, negNoise = 9
17-03-17 17:29:26.138 -07 000000433 INF: Z Motor: After move to -0.135688, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:26.138 -07 000000433 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:29:26.138 -07 000000433 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:26.188 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 17:29:26.188 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:26.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:26.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:26.188 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:26.188 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:26.188 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:26.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:26.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:26.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:26.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:26.198 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:26.208 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:29:26.208 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:29:26.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:26.258 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:26.458 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:26.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:26.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:26.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 17:29:26.488 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:26.498 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:26.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:29:26.498 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:26.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 17:29:26.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:26.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:26.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:29:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:26.598 -07 000000561 INF: Autofocus start
17-03-17 17:29:26.598 -07 000000561 INF: MeasureProfile start
17-03-17 17:29:26.598 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:26.598 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:26.608 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:26.608 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:26.608 -07 000000561 INF: MeasureProfile done
17-03-17 17:29:26.608 -07 000000561 INF: X=-64  Z correction [um]=-0.3149434
17-03-17 17:29:26.608 -07 000000561 INF: Autofocus finished
17-03-17 17:29:26.808 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:26.808 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:26.808 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.135696491666369. ----------
17-03-17 17:29:26.808 -07 000000610 INF: Cycle	1	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:26.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28085, sync = True, waitForSettling = True)
17-03-17 17:29:26.818 -07 000000610 INF: Z Motor: Moving to -0.128565 mm, started at -0.135696 mm, distance = 7.13 um
17-03-17 17:29:26.818 -07 000000610 INF: FPGA: Xmit ZDACW 28085\n [Z Motor]
17-03-17 17:29:26.818 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:29:26.828 -07 000000610 INF: FPGA: 'ZDACW 28085' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:26.828 -07 000000433 INF: FPGA: Recv ZDACR 28085
17-03-17 17:29:26.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:26.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.988 -07 000000431 INF: FPGA: Recv ZSGSRD 29306
17-03-17 17:29:26.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:26.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:26.998 -07 000000569 INF: FPGA: Recv ZSGSRD 29305
17-03-17 17:29:27.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.008 -07 000000502 INF: FPGA: Recv ZSGSRD 29304
17-03-17 17:29:27.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.018 -07 000000433 INF: FPGA: Recv ZSGSRD 29298
17-03-17 17:29:27.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.028 -07 000000502 INF: FPGA: Recv ZSGSRD 29301
17-03-17 17:29:27.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.038 -07 000000569 INF: FPGA: Recv ZSGSRD 29306
17-03-17 17:29:27.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.048 -07 000000561 INF: FPGA: Recv ZSGSRD 29304
17-03-17 17:29:27.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.058 -07 000000561 INF: FPGA: Recv ZSGSRD 29306
17-03-17 17:29:27.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.068 -07 000000431 INF: FPGA: Recv ZSGSRD 29301
17-03-17 17:29:27.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:27.078 -07 000000561 INF: FPGA: Recv ZSGSRD 29303
17-03-17 17:29:27.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:27.088 -07 000000502 INF: FPGA: Recv ZPIEZORD 24878
17-03-17 17:29:27.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:27.098 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.7 V.
17-03-17 17:29:27.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29303 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29304 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29298 (-127.8 uncal um), Max = 29306 (-127.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:29:27.098 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29303, posNoise = 3, negNoise = 5
17-03-17 17:29:27.098 -07 000000610 INF: Z Motor: After move to -0.128565, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:27.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:29:27.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:27.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:27.098 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:27.098 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:27.098 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:27.098 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:27.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:27.098 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:27.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:27.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:27.098 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:27.098 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:27.098 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:27.098 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:27.108 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:29:27.108 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:27.108 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:29:27.108 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:29:27.108 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:29:27.108 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:29:27.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28261 150\n [Camera]
17-03-17 17:29:27.318 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:27.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:27.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:27.708 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:27.708 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:27.708 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:29:27.708 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:27.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:27.708 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:27.708 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:27.708 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1086754920, 0x0, 418435064) start.
17-03-17 17:29:27.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28261 775
17-03-17 17:29:28.048 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:28.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:29:28.088 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:29:28.088 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:28.088 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1086754920, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:29:28.088 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:29:28.088 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:28.098 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:29:28.098 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:29:28.098 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:29:28.108 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:29:28.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:28.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:28.238 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:28.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:28.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:28.348 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:28.348 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:28.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1122177184, 0x0, 391868352) start.
17-03-17 17:29:28.348 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:28.348 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:29:28.428 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:28.428 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:28.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28261 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:29:28.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:28.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.128572040401156. ------
17-03-17 17:29:28.438 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13537 mm
17-03-17 17:29:28.438 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:28.438 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:28.438 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:29:28.438 -07 000000482 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 17:29:28.438 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29572, sync = True, waitForSettling = False)
17-03-17 17:29:28.438 -07 000000458 INF: Z Motor: Moving to -0.135372 mm, started at -0.128572 mm, distance = -6.80 um
17-03-17 17:29:28.438 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:28.448 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:28.448 -07 000000458 INF: FPGA: Xmit ZDACW 29572\n [Z Motor]
17-03-17 17:29:28.448 -07 000000632 INF: FPGA: Recv ZDACW
17-03-17 17:29:28.458 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:28.458 -07 000000458 INF: FPGA: 'ZDACW 29572' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:29:28.458 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 17:29:28.468 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:28.468 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:29:28.468 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:28.468 -07 000000482 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:28.468 -07 000000482 INF: Y Motor: Moving 1352 steps-32
17-03-17 17:29:28.478 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:28.478 -07 000000551 INF: FPGA: Recv ZDACR 29572
17-03-17 17:29:28.488 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:28.488 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:29:28.488 -07 000000458 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:29:28.668 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:28.668 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:29:28.728 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:29:28.728 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:29:28.728 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:28.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1122177184, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:29:28.728 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:29:28.728 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:28.728 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:28.728 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:28.728 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 493 ms.
17-03-17 17:29:28.738 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:29:28.858 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 17:29:28.858 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:29:28.908 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:28.908 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-17 17:29:28.918 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:29:28.918 -07 000000482 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:28.918 -07 000000482 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:29:28.918 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 17:29:29.188 -07 000000632 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.121402,
17-03-17 17:29:29.868 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:29.868 -07 000000431 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:29:29.878 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.878 -07 000000482 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:29.888 -07 000000482 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:29.888 -07 000000482 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:29:29.888 -07 000000482 INF: Y Motor: Moved to 69.8638 after 1453 ms (table move)
17-03-17 17:29:29.898 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135372 mm (DAC = 29572)
17-03-17 17:29:29.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.898 -07 000000431 INF: FPGA: Recv ZSGSRD 30364
17-03-17 17:29:29.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:29.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.908 -07 000000551 INF: FPGA: Recv ZSGSRD 30363
17-03-17 17:29:29.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.918 -07 000000431 INF: FPGA: Recv ZSGSRD 30363
17-03-17 17:29:29.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.928 -07 000000431 INF: FPGA: Recv ZSGSRD 30364
17-03-17 17:29:29.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.938 -07 000000480 INF: FPGA: Recv ZSGSRD 30364
17-03-17 17:29:29.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.948 -07 000000551 INF: FPGA: Recv ZSGSRD 30362
17-03-17 17:29:29.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.958 -07 000000482 INF: FPGA: Recv ZSGSRD 30358
17-03-17 17:29:29.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.968 -07 000000482 INF: FPGA: Recv ZSGSRD 30359
17-03-17 17:29:29.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30360
17-03-17 17:29:29.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:29.988 -07 000000482 INF: FPGA: Recv ZSGSRD 30365
17-03-17 17:29:29.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:29.998 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:29.998 -07 000000482 INF: FPGA: Recv ZPIEZORD 26274
17-03-17 17:29:30.008 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.008 -07 000000429 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -9.0 V.
17-03-17 17:29:30.008 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30362 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30363 (-134.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30358 (-134.6 uncal um), Max = 30365 (-134.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:29:30.008 -07 000000429 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30362, posNoise = 3, negNoise = 4
17-03-17 17:29:30.008 -07 000000429 INF: Z Motor: After move to -0.135372, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:30.008 -07 000000429 INF: Z Motor: Settle wait time = 1455 ms, measure time = 110 ms (allowed 150 ms), total time = 1565 ms
17-03-17 17:29:30.008 -07 000000429 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:30.048 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 17:29:30.048 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:30.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:30.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:30.048 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:30.048 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:30.048 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:30.048 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:30.048 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:29:30.048 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:30.058 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:30.058 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:30.058 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:29:30.058 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:29:30.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:30.108 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:30.308 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:30.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:30.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:30.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 17:29:30.348 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:30.348 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:30.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:29:30.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:29:30.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:30.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:30.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:29:30.448 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:30.448 -07 000000482 INF: Autofocus start
17-03-17 17:29:30.448 -07 000000482 INF: MeasureProfile start
17-03-17 17:29:30.448 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:30.458 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:30.458 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:30.458 -07 000000482 INF: MeasureProfile done
17-03-17 17:29:30.458 -07 000000482 INF: X=-96  Z correction [um]=-0.4707136
17-03-17 17:29:30.458 -07 000000482 INF: Autofocus finished
17-03-17 17:29:30.658 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:30.658 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:30.658 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.135375281059281. ----------
17-03-17 17:29:30.658 -07 000000610 INF: Cycle	1	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:30.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27982, sync = True, waitForSettling = True)
17-03-17 17:29:30.668 -07 000000610 INF: Z Motor: Moving to -0.128093 mm, started at -0.135375 mm, distance = 7.28 um
17-03-17 17:29:30.668 -07 000000610 INF: FPGA: Xmit ZDACW 27982\n [Z Motor]
17-03-17 17:29:30.668 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:29:30.678 -07 000000610 INF: FPGA: 'ZDACW 27982' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:30.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:30.678 -07 000000480 INF: FPGA: Recv ZDACR 27982
17-03-17 17:29:30.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:30.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29231
17-03-17 17:29:30.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:30.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.848 -07 000000480 INF: FPGA: Recv ZSGSRD 29231
17-03-17 17:29:30.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.858 -07 000000551 INF: FPGA: Recv ZSGSRD 29235
17-03-17 17:29:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.868 -07 000000480 INF: FPGA: Recv ZSGSRD 29226
17-03-17 17:29:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.878 -07 000000480 INF: FPGA: Recv ZSGSRD 29229
17-03-17 17:29:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29231
17-03-17 17:29:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.898 -07 000000431 INF: FPGA: Recv ZSGSRD 29227
17-03-17 17:29:30.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29234
17-03-17 17:29:30.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.918 -07 000000482 INF: FPGA: Recv ZSGSRD 29224
17-03-17 17:29:30.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:30.928 -07 000000482 INF: FPGA: Recv ZSGSRD 29232
17-03-17 17:29:30.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:30.938 -07 000000429 INF: FPGA: Recv ZPIEZORD 24833
17-03-17 17:29:30.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:30.948 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.6 V.
17-03-17 17:29:30.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29230 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29231 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29224 (-127.3 uncal um), Max = 29235 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:29:30.948 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29230, posNoise = 5, negNoise = 6
17-03-17 17:29:30.948 -07 000000610 INF: Z Motor: After move to -0.128093, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:30.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:29:30.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:30.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:30.948 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:30.948 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:30.948 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:30.948 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:30.948 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:30.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:30.948 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:29:30.948 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:30.948 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:30.948 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:30.958 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:30.958 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:30.958 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:29:30.958 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:30.968 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:29:30.968 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:29:30.968 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:29:30.968 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:29:30.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28158 150\n [Camera]
17-03-17 17:29:31.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:31.498 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:31.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:31.558 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:31.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:31.558 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:31.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:31.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:31.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:31.568 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:31.568 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:29:31.568 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:31.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1086754920, 0x0, 418435064) start.
17-03-17 17:29:31.748 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28158 775
17-03-17 17:29:31.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:31.938 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1086754920, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:29:31.938 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:29:31.938 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:31.938 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:29:31.938 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:29:31.938 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:31.948 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:29:31.948 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:29:31.948 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:29:31.948 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:29:32.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:32.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:32.088 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:32.088 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:32.088 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) start.
17-03-17 17:29:32.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:32.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:32.088 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:32.088 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:32.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1474691344, 0x0, 418435064) start.
17-03-17 17:29:32.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:29:32.278 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:32.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28158 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:29:32.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:32.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.128103072914808. ------
17-03-17 17:29:32.288 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:32.288 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13490 mm
17-03-17 17:29:32.288 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:32.288 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:32.288 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29469, sync = True, waitForSettling = False)
17-03-17 17:29:32.288 -07 000000551 INF: Z Motor: Moving to -0.134900 mm, started at -0.128103 mm, distance = -6.80 um
17-03-17 17:29:32.408 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 17:29:32.408 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:29:32.408 -07 000000482 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:29:32.408 -07 000000551 INF: FPGA: Xmit ZDACW 29469\n [Z Motor]
17-03-17 17:29:32.408 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:29:32.418 -07 000000551 INF: FPGA: 'ZDACW 29469' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:32.418 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:32.418 -07 000000433 INF: FPGA: Recv ZDACR 29469
17-03-17 17:29:32.428 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:32.428 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:32.428 -07 000000551 INF: Z Motor: MoveAbsStepped took 135 ms (did NOT wait for settling yet))
17-03-17 17:29:32.428 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:29:32.438 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:29:32.438 -07 000000482 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:32.438 -07 000000482 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:32.438 -07 000000482 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:29:32.438 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:32.448 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:32.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1474691344, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:29:32.478 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:29:32.478 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:32.478 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 17:29:32.478 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:29:32.478 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:32.478 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:32.488 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:32.488 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:29:32.488 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:29:32.638 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:32.638 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 17:29:32.818 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 17:29:32.818 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:29:32.848 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:32.858 -07 000000480 INF: FPGA: Recv YRDPOS 144770
17-03-17 17:29:32.858 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:29:32.858 -07 000000482 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:32.858 -07 000000482 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:29:32.858 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-17 17:29:33.808 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:33.808 -07 000000632 INF: FPGA: Recv YRDPOS 144770
17-03-17 17:29:33.818 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.818 -07 000000482 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:33.828 -07 000000482 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:33.828 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:33.828 -07 000000482 INF: Y Motor: Moved to 70.6885 after 1427 ms (table move)
17-03-17 17:29:33.838 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134900 mm (DAC = 29469)
17-03-17 17:29:33.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.838 -07 000000482 INF: FPGA: Recv ZSGSRD 30296
17-03-17 17:29:33.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:33.848 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.848 -07 000000482 INF: FPGA: Recv ZSGSRD 30292
17-03-17 17:29:33.858 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.858 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.858 -07 000000482 INF: FPGA: Recv ZSGSRD 30287
17-03-17 17:29:33.868 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.868 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.868 -07 000000482 INF: FPGA: Recv ZSGSRD 30287
17-03-17 17:29:33.878 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.878 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.878 -07 000000482 INF: FPGA: Recv ZSGSRD 30280
17-03-17 17:29:33.888 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.888 -07 000000482 INF: FPGA: Recv ZSGSRD 30296
17-03-17 17:29:33.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.898 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.898 -07 000000382 INF: FPGA: Recv ZSGSRD 30291
17-03-17 17:29:33.908 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.918 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.918 -07 000000480 INF: FPGA: Recv ZSGSRD 30289
17-03-17 17:29:33.928 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:29:33.928 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.928 -07 000000433 INF: FPGA: Recv ZSGSRD 30288
17-03-17 17:29:33.938 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.938 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:33.938 -07 000000551 INF: FPGA: Recv ZSGSRD 30290
17-03-17 17:29:33.948 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.948 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:33.948 -07 000000551 INF: FPGA: Recv ZPIEZORD 26210
17-03-17 17:29:33.958 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:33.958 -07 000000569 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.0 V.
17-03-17 17:29:33.958 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30290 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30290 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30280 (-134.1 uncal um), Max = 30296 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:29:33.958 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30290, posNoise = 6, negNoise = 10
17-03-17 17:29:33.958 -07 000000569 INF: Z Motor: After move to -0.134900, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:33.958 -07 000000569 INF: Z Motor: Settle wait time = 1431 ms, measure time = 118 ms (allowed 150 ms), total time = 1549 ms
17-03-17 17:29:33.958 -07 000000569 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:33.998 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1708 ms
17-03-17 17:29:33.998 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:33.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:33.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:33.998 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:33.998 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:33.998 -07 000000632 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:33.998 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:33.998 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:33.998 -07 000000632 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:34.008 -07 000000632 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:34.008 -07 000000632 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:34.008 -07 000000632 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:29:34.008 -07 000000632 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:29:34.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:34.058 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:34.258 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:34.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:34.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:34.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:34.298 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:34.298 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:34.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 17:29:34.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:29:34.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:34.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:34.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:29:34.398 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:34.398 -07 000000502 INF: Autofocus start
17-03-17 17:29:34.398 -07 000000502 INF: MeasureProfile start
17-03-17 17:29:34.398 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:34.408 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:34.408 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:34.408 -07 000000502 INF: MeasureProfile done
17-03-17 17:29:34.408 -07 000000502 INF: X=-80  Z correction [um]=-0.3928285
17-03-17 17:29:34.408 -07 000000502 INF: Autofocus finished
17-03-17 17:29:34.548 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.115961,
17-03-17 17:29:34.608 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:34.608 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:34.608 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.134912737785074. ----------
17-03-17 17:29:34.608 -07 000000610 INF: Cycle	1	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:34.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27896, sync = True, waitForSettling = True)
17-03-17 17:29:34.618 -07 000000610 INF: Z Motor: Moving to -0.127700 mm, started at -0.134913 mm, distance = 7.21 um
17-03-17 17:29:34.618 -07 000000610 INF: FPGA: Xmit ZDACW 27896\n [Z Motor]
17-03-17 17:29:34.618 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 17:29:34.628 -07 000000610 INF: FPGA: 'ZDACW 27896' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:34.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:34.628 -07 000000462 INF: FPGA: Recv ZDACR 27896
17-03-17 17:29:34.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:34.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.788 -07 000000462 INF: FPGA: Recv ZSGSRD 29166
17-03-17 17:29:34.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.798 -07 000000462 INF: FPGA: Recv ZSGSRD 29168
17-03-17 17:29:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.808 -07 000000458 INF: FPGA: Recv ZSGSRD 29168
17-03-17 17:29:34.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29168
17-03-17 17:29:34.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.828 -07 000000462 INF: FPGA: Recv ZSGSRD 29170
17-03-17 17:29:34.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.838 -07 000000429 INF: FPGA: Recv ZSGSRD 29170
17-03-17 17:29:34.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.848 -07 000000429 INF: FPGA: Recv ZSGSRD 29172
17-03-17 17:29:34.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.858 -07 000000429 INF: FPGA: Recv ZSGSRD 29171
17-03-17 17:29:34.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.868 -07 000000429 INF: FPGA: Recv ZSGSRD 29167
17-03-17 17:29:34.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:34.878 -07 000000458 INF: FPGA: Recv ZSGSRD 29168
17-03-17 17:29:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:34.888 -07 000000458 INF: FPGA: Recv ZPIEZORD 24742
17-03-17 17:29:34.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:34.898 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.7 V.
17-03-17 17:29:34.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29169 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29168 (-126.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29166 (-126.9 uncal um), Max = 29172 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:29:34.898 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29169, posNoise = 3, negNoise = 3
17-03-17 17:29:34.898 -07 000000610 INF: Z Motor: After move to -0.127700, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:34.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:29:34.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:34.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:34.898 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:34.898 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:34.898 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:34.898 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:34.898 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:34.898 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:34.898 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:29:34.898 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:34.898 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:34.898 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:34.898 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:34.898 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:34.908 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:29:34.908 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:34.908 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:29:34.908 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:29:34.918 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:29:34.918 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:29:34.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28073 150\n [Camera]
17-03-17 17:29:35.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:35.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:35.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:35.508 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:35.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:35.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:35.508 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:35.508 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:35.508 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:29:35.508 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:35.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:29:35.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28073 775
17-03-17 17:29:35.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:35.888 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:29:35.888 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:29:35.888 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:35.888 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:29:35.888 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:29:35.888 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:35.888 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:35.888 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:29:35.888 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:35.898 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:29:36.038 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:36.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:36.038 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:36.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:36.038 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:36.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1086754920, 0x0, 391868352) start.
17-03-17 17:29:36.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:36.038 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:36.038 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:36.038 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1122177184, 0x0, 418435064) start.
17-03-17 17:29:36.228 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:36.228 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:36.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28073 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:29:36.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:36.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.12771119597416. ------
17-03-17 17:29:36.238 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:36.238 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13451 mm
17-03-17 17:29:36.238 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:36.238 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:36.238 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:29:36.238 -07 000000429 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 17:29:36.238 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29383, sync = True, waitForSettling = False)
17-03-17 17:29:36.238 -07 000000462 INF: Z Motor: Moving to -0.134507 mm, started at -0.127711 mm, distance = -6.80 um
17-03-17 17:29:36.248 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:36.248 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:36.248 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-17 17:29:36.258 -07 000000462 INF: FPGA: Xmit ZDACW 29383\n [Z Motor]
17-03-17 17:29:36.258 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:29:36.258 -07 000000429 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:36.258 -07 000000429 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:36.258 -07 000000429 INF: Y Motor: Moving 1351 steps-29
17-03-17 17:29:36.258 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:29:36.268 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:36.268 -07 000000462 INF: FPGA: 'ZDACW 29383' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:29:36.278 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:36.288 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:36.288 -07 000000433 INF: FPGA: Recv ZDACR 29383
17-03-17 17:29:36.298 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:29:36.298 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 17:29:36.418 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1122177184, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:29:36.418 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:29:36.418 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:36.418 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1086754920, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:29:36.418 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:29:36.418 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:36.428 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:36.428 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:36.428 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:29:36.428 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:29:36.468 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:36.468 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:29:36.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:36.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:36.658 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 17:29:36.658 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-17 17:29:36.678 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:36.688 -07 000000569 INF: FPGA: Recv YRDPOS 146471
17-03-17 17:29:36.688 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:29:36.688 -07 000000429 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:36.688 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:29:36.688 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 17:29:37.638 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:37.638 -07 000000482 INF: FPGA: Recv YRDPOS 146471
17-03-17 17:29:37.648 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:37.648 -07 000000429 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:37.658 -07 000000429 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:37.658 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:37.658 -07 000000429 INF: Y Motor: Moved to 71.5190 after 1425 ms (table move)
17-03-17 17:29:37.668 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134507 mm (DAC = 29383)
17-03-17 17:29:37.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.668 -07 000000433 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:29:37.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:37.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.678 -07 000000431 INF: FPGA: Recv ZSGSRD 30222
17-03-17 17:29:37.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.688 -07 000000618 INF: FPGA: Recv ZSGSRD 30237
17-03-17 17:29:37.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.698 -07 000000569 INF: FPGA: Recv ZSGSRD 30235
17-03-17 17:29:37.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.708 -07 000000433 INF: FPGA: Recv ZSGSRD 30228
17-03-17 17:29:37.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.718 -07 000000551 INF: FPGA: Recv ZSGSRD 30230
17-03-17 17:29:37.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30226
17-03-17 17:29:37.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.738 -07 000000569 INF: FPGA: Recv ZSGSRD 30219
17-03-17 17:29:37.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.748 -07 000000458 INF: FPGA: Recv ZSGSRD 30221
17-03-17 17:29:37.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:37.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:37.758 -07 000000382 INF: FPGA: Recv ZSGSRD 30229
17-03-17 17:29:37.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.768 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:37.768 -07 000000462 INF: FPGA: Recv ZPIEZORD 26119
17-03-17 17:29:37.778 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:37.778 -07 000000541 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.0 V.
17-03-17 17:29:37.778 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30228 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30228 (-133.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30219 (-133.7 uncal um), Max = 30237 (-133.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:29:37.778 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30228, posNoise = 9, negNoise = 9
17-03-17 17:29:37.778 -07 000000541 INF: Z Motor: After move to -0.134507, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:37.778 -07 000000541 INF: Z Motor: Settle wait time = 1427 ms, measure time = 109 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:29:37.778 -07 000000541 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:37.828 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:29:37.828 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:37.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:37.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:37.828 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:37.828 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:37.828 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:37.828 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:37.828 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:37.828 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:37.838 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:37.838 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:37.848 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:29:37.848 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:29:37.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:37.898 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:38.098 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:38.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:38.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:38.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1425127184, 0x0, 559484976) start.
17-03-17 17:29:38.138 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:38.138 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:38.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 17:29:38.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1425127184, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:29:38.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:38.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:29:38.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:29:38.238 -07 000000458 INF: Autofocus start
17-03-17 17:29:38.238 -07 000000458 INF: MeasureProfile start
17-03-17 17:29:38.238 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:38.238 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:38.248 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:38.248 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:38.248 -07 000000458 INF: MeasureProfile done
17-03-17 17:29:38.248 -07 000000458 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:29:38.248 -07 000000458 INF: Autofocus finished
17-03-17 17:29:38.448 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:38.448 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:38.448 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.134514436632285. ----------
17-03-17 17:29:38.448 -07 000000610 INF: Cycle	1	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:38.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27878, sync = True, waitForSettling = True)
17-03-17 17:29:38.458 -07 000000610 INF: Z Motor: Moving to -0.127617 mm, started at -0.134514 mm, distance = 6.90 um
17-03-17 17:29:38.458 -07 000000610 INF: FPGA: Xmit ZDACW 27878\n [Z Motor]
17-03-17 17:29:38.458 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:29:38.468 -07 000000610 INF: FPGA: 'ZDACW 27878' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:38.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:38.468 -07 000000382 INF: FPGA: Recv ZDACR 27878
17-03-17 17:29:38.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:38.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.628 -07 000000561 INF: FPGA: Recv ZSGSRD 29158
17-03-17 17:29:38.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.638 -07 000000551 INF: FPGA: Recv ZSGSRD 29157
17-03-17 17:29:38.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.648 -07 000000632 INF: FPGA: Recv ZSGSRD 29155
17-03-17 17:29:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.658 -07 000000608 INF: FPGA: Recv ZSGSRD 29154
17-03-17 17:29:38.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.668 -07 000000433 INF: FPGA: Recv ZSGSRD 29157
17-03-17 17:29:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.678 -07 000000618 INF: FPGA: Recv ZSGSRD 29153
17-03-17 17:29:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.688 -07 000000541 INF: FPGA: Recv ZSGSRD 29156
17-03-17 17:29:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.698 -07 000000480 INF: FPGA: Recv ZSGSRD 29163
17-03-17 17:29:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.708 -07 000000429 INF: FPGA: Recv ZSGSRD 29156
17-03-17 17:29:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:38.718 -07 000000551 INF: FPGA: Recv ZSGSRD 29154
17-03-17 17:29:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:38.728 -07 000000462 INF: FPGA: Recv ZPIEZORD 24753
17-03-17 17:29:38.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:38.738 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -9.7 V.
17-03-17 17:29:38.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29156 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29156 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29153 (-126.8 uncal um), Max = 29163 (-126.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:29:38.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29156, posNoise = 7, negNoise = 3
17-03-17 17:29:38.738 -07 000000610 INF: Z Motor: After move to -0.127617, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:38.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:29:38.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:38.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:38.738 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:38.738 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:38.738 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:38.738 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:38.738 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:38.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:38.738 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:38.738 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:38.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:38.738 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:38.748 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:29:38.748 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:38.748 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:38.748 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:38.758 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 17:29:38.758 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:29:38.758 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:29:38.758 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:29:38.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28055 150\n [Camera]
17-03-17 17:29:38.958 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:39.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:39.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:39.348 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:39.348 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:39.348 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:29:39.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:39.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:39.348 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:39.348 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:39.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:29:39.538 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28055 775
17-03-17 17:29:39.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:39.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:29:39.728 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:29:39.728 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:39.728 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:29:39.728 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:29:39.728 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:39.728 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:39.728 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:39.728 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:29:39.738 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:29:39.878 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 17:29:39.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 17:29:39.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:39.878 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:39.878 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:29:39.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-17 17:29:39.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-17 17:29:39.888 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:39.888 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:39.888 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:29:39.918 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.105114,
17-03-17 17:29:40.068 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:29:40.068 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:40.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28055 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:29:40.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:40.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.127627681216317. ------
17-03-17 17:29:40.078 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:40.078 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13443 mm
17-03-17 17:29:40.078 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:40.078 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:40.078 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:29:40.078 -07 000000458 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 17:29:40.078 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29366, sync = True, waitForSettling = False)
17-03-17 17:29:40.078 -07 000000482 INF: Z Motor: Moving to -0.134429 mm, started at -0.127628 mm, distance = -6.80 um
17-03-17 17:29:40.088 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:40.088 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:40.088 -07 000000462 INF: FPGA: Recv YRDPOS 146471
17-03-17 17:29:40.098 -07 000000482 INF: FPGA: Xmit ZDACW 29366\n [Z Motor]
17-03-17 17:29:40.098 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:29:40.098 -07 000000458 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:40.208 -07 000000458 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:40.208 -07 000000458 INF: Y Motor: Moving 1350 steps-28
17-03-17 17:29:40.208 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:29:40.208 -07 000000482 INF: FPGA: 'ZDACW 29366' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 17:29:40.208 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:40.218 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:40.218 -07 000000618 INF: FPGA: Recv ZDACR 29366
17-03-17 17:29:40.228 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:40.228 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:29:40.228 -07 000000482 INF: Z Motor: MoveAbsStepped took 143 ms (did NOT wait for settling yet))
17-03-17 17:29:40.268 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 17:29:40.268 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:29:40.268 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:40.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 17:29:40.268 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:29:40.268 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:40.278 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:40.278 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:29:40.278 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:29:40.278 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:29:40.408 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:40.408 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 328 ms overall
17-03-17 17:29:40.598 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:29:40.598 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:29:40.638 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:40.638 -07 000000442 INF: FPGA: Recv YRDPOS 148172
17-03-17 17:29:40.648 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:40.648 -07 000000458 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:40.648 -07 000000458 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:29:40.648 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 17:29:41.498 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:41.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:41.598 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:41.598 -07 000000475 INF: FPGA: Recv YRDPOS 148172
17-03-17 17:29:41.608 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:41.608 -07 000000458 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:41.618 -07 000000458 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:41.618 -07 000000458 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:41.618 -07 000000458 INF: Y Motor: Moved to 72.3496 after 1543 ms (table move)
17-03-17 17:29:41.628 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134429 mm (DAC = 29366)
17-03-17 17:29:41.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.628 -07 000000480 INF: FPGA: Recv ZSGSRD 30222
17-03-17 17:29:41.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:41.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.638 -07 000000608 INF: FPGA: Recv ZSGSRD 30216
17-03-17 17:29:41.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.648 -07 000000551 INF: FPGA: Recv ZSGSRD 30218
17-03-17 17:29:41.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.658 -07 000000618 INF: FPGA: Recv ZSGSRD 30223
17-03-17 17:29:41.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.668 -07 000000442 INF: FPGA: Recv ZSGSRD 30211
17-03-17 17:29:41.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:41.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.678 -07 000000502 INF: FPGA: Recv ZSGSRD 30211
17-03-17 17:29:41.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.688 -07 000000561 INF: FPGA: Recv ZSGSRD 30218
17-03-17 17:29:41.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.698 -07 000000632 INF: FPGA: Recv ZSGSRD 30214
17-03-17 17:29:41.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.708 -07 000000458 INF: FPGA: Recv ZSGSRD 30216
17-03-17 17:29:41.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:41.718 -07 000000442 INF: FPGA: Recv ZSGSRD 30213
17-03-17 17:29:41.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.728 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:41.728 -07 000000502 INF: FPGA: Recv ZPIEZORD 26170
17-03-17 17:29:41.738 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:41.738 -07 000000382 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -8.9 V.
17-03-17 17:29:41.738 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30216 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30216 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30211 (-133.6 uncal um), Max = 30223 (-133.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:29:41.738 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30216, posNoise = 7, negNoise = 5
17-03-17 17:29:41.738 -07 000000382 INF: Z Motor: After move to -0.134429, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:41.738 -07 000000382 INF: Z Motor: Settle wait time = 1545 ms, measure time = 108 ms (allowed 150 ms), total time = 1653 ms
17-03-17 17:29:41.738 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:41.788 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-17 17:29:41.788 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:41.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:41.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:41.788 -07 000000632 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:41.788 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:41.788 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:41.788 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:41.788 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:29:41.788 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:41.798 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:41.798 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:41.798 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:29:41.798 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:29:41.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:41.848 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:42.048 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:42.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:42.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:42.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:42.088 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:42.088 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:42.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:29:42.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:29:42.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:42.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:29:42.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:29:42.188 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:42.188 -07 000000561 INF: Autofocus start
17-03-17 17:29:42.188 -07 000000561 INF: MeasureProfile start
17-03-17 17:29:42.188 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:42.198 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:29:42.198 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:42.198 -07 000000561 INF: MeasureProfile done
17-03-17 17:29:42.198 -07 000000561 INF: X=-147  Z correction [um]=-0.7189724
17-03-17 17:29:42.198 -07 000000561 INF: Autofocus finished
17-03-17 17:29:42.398 -07 000000442 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:42.398 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:42.398 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134437346086584. ----------
17-03-17 17:29:42.398 -07 000000610 INF: Cycle	1	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:42.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27721, sync = True, waitForSettling = True)
17-03-17 17:29:42.408 -07 000000610 INF: Z Motor: Moving to -0.126899 mm, started at -0.134437 mm, distance = 7.54 um
17-03-17 17:29:42.408 -07 000000610 INF: FPGA: Xmit ZDACW 27721\n [Z Motor]
17-03-17 17:29:42.408 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:29:42.418 -07 000000610 INF: FPGA: 'ZDACW 27721' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:42.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:42.418 -07 000000482 INF: FPGA: Recv ZDACR 27721
17-03-17 17:29:42.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:42.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.578 -07 000000442 INF: FPGA: Recv ZSGSRD 29047
17-03-17 17:29:42.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:42.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.588 -07 000000502 INF: FPGA: Recv ZSGSRD 29047
17-03-17 17:29:42.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.598 -07 000000429 INF: FPGA: Recv ZSGSRD 29040
17-03-17 17:29:42.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.608 -07 000000462 INF: FPGA: Recv ZSGSRD 29044
17-03-17 17:29:42.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.618 -07 000000482 INF: FPGA: Recv ZSGSRD 29046
17-03-17 17:29:42.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.628 -07 000000433 INF: FPGA: Recv ZSGSRD 29041
17-03-17 17:29:42.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.638 -07 000000480 INF: FPGA: Recv ZSGSRD 29045
17-03-17 17:29:42.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.648 -07 000000561 INF: FPGA: Recv ZSGSRD 29042
17-03-17 17:29:42.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.658 -07 000000626 INF: FPGA: Recv ZSGSRD 29048
17-03-17 17:29:42.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:42.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29045
17-03-17 17:29:42.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:42.678 -07 000000433 INF: FPGA: Recv ZPIEZORD 24639
17-03-17 17:29:42.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:42.688 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.230 V. Piezo Error = -9.7 V.
17-03-17 17:29:42.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29044 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29045 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29040 (-126.1 uncal um), Max = 29048 (-126.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:29:42.688 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29044, posNoise = 4, negNoise = 4
17-03-17 17:29:42.688 -07 000000610 INF: Z Motor: After move to -0.126899, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:42.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:29:42.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:42.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:42.688 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:42.688 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:42.688 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:42.688 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:42.688 -07 000000632 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:42.688 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:42.688 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:42.688 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:42.688 -07 000000632 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:42.688 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:42.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:42.698 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:42.698 -07 000000632 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:29:42.698 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:42.708 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:29:42.708 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:29:42.708 -07 000000632 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:29:42.708 -07 000000632 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:29:42.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27898 150\n [Camera]
17-03-17 17:29:42.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:43.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:43.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:43.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:43.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:43.318 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:43.318 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:43.318 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:43.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:29:43.318 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:43.318 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:29:43.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27898 775
17-03-17 17:29:43.638 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:43.698 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:29:43.698 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:29:43.698 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:43.698 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:43.698 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:29:43.698 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:29:43.698 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:43.698 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:43.698 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:29:43.708 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:29:43.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:43.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:43.828 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:43.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:43.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:43.838 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:43.838 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:43.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1086754920, 0x0, 391868352) start.
17-03-17 17:29:43.848 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:43.848 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1122177184, 0x0, 418435064) start.
17-03-17 17:29:44.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 17:29:44.028 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:44.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27898 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-17 17:29:44.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:44.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.12690816945644. ------
17-03-17 17:29:44.028 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:44.028 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13371 mm
17-03-17 17:29:44.028 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:44.028 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:29:44.028 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 17:29:44.148 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:44.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1122177184, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:29:44.218 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:29:44.218 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:44.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1086754920, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:29:44.228 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:29:44.228 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:44.228 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:44.228 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:44.228 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:29:44.238 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:29:44.238 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29208, sync = True, waitForSettling = False)
17-03-17 17:29:44.238 -07 000000569 INF: Z Motor: Moving to -0.133706 mm, started at -0.126908 mm, distance = -6.80 um
17-03-17 17:29:44.238 -07 000000569 INF: FPGA: Xmit ZDACW 29208\n [Z Motor]
17-03-17 17:29:44.248 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:44.248 -07 000000482 INF: FPGA: Recv YRDPOS 148172
17-03-17 17:29:44.248 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:29:44.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 91 ms to get response, and 100 ms overall
17-03-17 17:29:44.248 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:44.248 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:44.248 -07 000000626 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:29:44.248 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:44.248 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 100 ms to get response, and 214 ms overall
17-03-17 17:29:44.248 -07 000000569 INF: FPGA: 'ZDACW 29208' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:29:44.258 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:44.268 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:44.268 -07 000000482 INF: FPGA: Recv ZDACR 29208
17-03-17 17:29:44.278 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:29:44.278 -07 000000569 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 17:29:44.458 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:44.458 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 17:29:44.628 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 17:29:44.628 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 17:29:44.658 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:44.658 -07 000000569 INF: FPGA: Recv YRDPOS 149864
17-03-17 17:29:44.668 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:44.668 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:44.668 -07 000000626 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 17:29:44.668 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.230 mm/sec
17-03-17 17:29:45.288 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.096953,
17-03-17 17:29:45.618 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:45.618 -07 000000541 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:29:45.628 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:45.628 -07 000000626 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:45.638 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:45.638 -07 000000626 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:29:45.638 -07 000000626 INF: Y Motor: Moved to 73.1763 after 1610 ms (table move)
17-03-17 17:29:45.648 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133706 mm (DAC = 29208)
17-03-17 17:29:45.648 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.648 -07 000000561 INF: FPGA: Recv ZSGSRD 30112
17-03-17 17:29:45.658 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:45.658 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.658 -07 000000626 INF: FPGA: Recv ZSGSRD 30106
17-03-17 17:29:45.668 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.668 -07 000000482 INF: FPGA: Recv ZSGSRD 30105
17-03-17 17:29:45.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.678 -07 000000561 INF: FPGA: Recv ZSGSRD 30113
17-03-17 17:29:45.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.688 -07 000000569 INF: FPGA: Recv ZSGSRD 30103
17-03-17 17:29:45.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.698 -07 000000482 INF: FPGA: Recv ZSGSRD 30101
17-03-17 17:29:45.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.708 -07 000000569 INF: FPGA: Recv ZSGSRD 30099
17-03-17 17:29:45.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.718 -07 000000482 INF: FPGA: Recv ZSGSRD 30097
17-03-17 17:29:45.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.728 -07 000000569 INF: FPGA: Recv ZSGSRD 30104
17-03-17 17:29:45.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:45.738 -07 000000561 INF: FPGA: Recv ZSGSRD 30111
17-03-17 17:29:45.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.748 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:45.748 -07 000000569 INF: FPGA: Recv ZPIEZORD 26031
17-03-17 17:29:45.758 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:45.758 -07 000000551 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.0 V.
17-03-17 17:29:45.758 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30105 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30104 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30097 (-132.9 uncal um), Max = 30113 (-133.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:29:45.758 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30105, posNoise = 8, negNoise = 8
17-03-17 17:29:45.758 -07 000000551 INF: Z Motor: After move to -0.133706, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:45.758 -07 000000551 INF: Z Motor: Settle wait time = 1406 ms, measure time = 106 ms (allowed 150 ms), total time = 1512 ms
17-03-17 17:29:45.758 -07 000000551 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:45.808 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1773 ms
17-03-17 17:29:45.808 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:45.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:45.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:45.808 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:45.808 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:45.808 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:45.808 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:45.808 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:45.808 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:45.818 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:45.818 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:45.828 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:29:45.828 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:29:45.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:45.868 -07 000000632 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:46.068 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:46.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:46.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:46.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:46.108 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:46.108 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:46.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:29:46.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:29:46.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:46.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:46.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:29:46.208 -07 000000632 INF: Autofocus start
17-03-17 17:29:46.208 -07 000000632 INF: MeasureProfile start
17-03-17 17:29:46.208 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:46.208 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:46.218 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:46.218 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:46.218 -07 000000632 INF: MeasureProfile done
17-03-17 17:29:46.218 -07 000000632 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:29:46.218 -07 000000632 INF: Autofocus finished
17-03-17 17:29:46.418 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:46.418 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:46.418 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.133724258538849. ----------
17-03-17 17:29:46.418 -07 000000610 INF: Cycle	1	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:46.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27703, sync = True, waitForSettling = True)
17-03-17 17:29:46.428 -07 000000610 INF: Z Motor: Moving to -0.126816 mm, started at -0.133724 mm, distance = 6.91 um
17-03-17 17:29:46.428 -07 000000610 INF: FPGA: Xmit ZDACW 27703\n [Z Motor]
17-03-17 17:29:46.428 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:29:46.438 -07 000000610 INF: FPGA: 'ZDACW 27703' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:46.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:46.438 -07 000000569 INF: FPGA: Recv ZDACR 27703
17-03-17 17:29:46.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:46.498 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:46.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:46.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.598 -07 000000429 INF: FPGA: Recv ZSGSRD 29029
17-03-17 17:29:46.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:46.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.608 -07 000000632 INF: FPGA: Recv ZSGSRD 29037
17-03-17 17:29:46.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.618 -07 000000429 INF: FPGA: Recv ZSGSRD 29029
17-03-17 17:29:46.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.628 -07 000000632 INF: FPGA: Recv ZSGSRD 29032
17-03-17 17:29:46.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.638 -07 000000626 INF: FPGA: Recv ZSGSRD 29032
17-03-17 17:29:46.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.648 -07 000000482 INF: FPGA: Recv ZSGSRD 29030
17-03-17 17:29:46.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.658 -07 000000541 INF: FPGA: Recv ZSGSRD 29033
17-03-17 17:29:46.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.668 -07 000000482 INF: FPGA: Recv ZSGSRD 29034
17-03-17 17:29:46.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29029
17-03-17 17:29:46.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:46.688 -07 000000482 INF: FPGA: Recv ZSGSRD 29031
17-03-17 17:29:46.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:46.698 -07 000000541 INF: FPGA: Recv ZPIEZORD 24625
17-03-17 17:29:46.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:46.708 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.227 V. Piezo Error = -9.7 V.
17-03-17 17:29:46.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29032 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29032 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29029 (-126.0 uncal um), Max = 29037 (-126.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:29:46.708 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29032, posNoise = 5, negNoise = 3
17-03-17 17:29:46.708 -07 000000610 INF: Z Motor: After move to -0.126816, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:46.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:29:46.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:46.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:46.708 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:46.708 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:46.708 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:46.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:46.708 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:46.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:46.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:29:46.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:46.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:46.708 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:46.718 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:46.718 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:46.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:29:46.718 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:46.728 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:29:46.728 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:46.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:29:46.728 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:46.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27880 150\n [Camera]
17-03-17 17:29:46.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:47.318 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:47.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:47.318 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:47.318 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:47.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:47.318 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:47.328 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:47.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:29:47.328 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:47.328 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) start.
17-03-17 17:29:47.508 -07 000000632 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27880 775
17-03-17 17:29:47.658 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:47.698 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1051332656, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:29:47.698 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:29:47.698 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:47.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:29:47.698 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:29:47.698 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:47.698 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:47.698 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:47.698 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:29:47.708 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:29:47.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:47.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:47.848 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:47.848 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:47.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 17:29:47.848 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:47.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:47.848 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:47.848 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:47.848 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 17:29:48.038 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:48.038 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:48.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27880 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:29:48.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:48.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.126831078910739. ------
17-03-17 17:29:48.048 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:48.048 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13363 mm
17-03-17 17:29:48.048 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:48.048 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:48.048 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29191, sync = True, waitForSettling = False)
17-03-17 17:29:48.048 -07 000000541 INF: Z Motor: Moving to -0.133628 mm, started at -0.126831 mm, distance = -6.80 um
17-03-17 17:29:48.048 -07 000000632 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:29:48.048 -07 000000632 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:29:48.058 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:48.058 -07 000000632 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:48.058 -07 000000482 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:29:48.068 -07 000000541 INF: FPGA: Xmit ZDACW 29191\n [Z Motor]
17-03-17 17:29:48.068 -07 000000632 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:29:48.068 -07 000000632 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:48.068 -07 000000632 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:48.068 -07 000000632 INF: Y Motor: Moving 1354 steps-34
17-03-17 17:29:48.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:29:48.078 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:48.078 -07 000000541 INF: FPGA: 'ZDACW 29191' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:29:48.088 -07 000000632 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:48.098 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:48.098 -07 000000561 INF: FPGA: Recv ZDACR 29191
17-03-17 17:29:48.108 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:29:48.108 -07 000000541 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:29:48.228 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:29:48.228 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:29:48.228 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:48.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:29:48.228 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:29:48.228 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:48.238 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:48.238 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:29:48.238 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:29:48.238 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:29:48.278 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:48.278 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:29:48.458 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 17:29:48.458 -07 000000632 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:29:48.488 -07 000000632 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:48.488 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 17:29:48.498 -07 000000632 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:48.498 -07 000000632 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:48.498 -07 000000632 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:29:48.498 -07 000000632 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 17:29:49.448 -07 000000632 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:49.448 -07 000000480 INF: FPGA: Recv YRDPOS 151569
17-03-17 17:29:49.458 -07 000000632 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:49.458 -07 000000632 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:49.468 -07 000000632 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:49.468 -07 000000632 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:49.468 -07 000000632 INF: Y Motor: Moved to 74.0083 after 1418 ms (table move)
17-03-17 17:29:49.468 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133628 mm (DAC = 29191)
17-03-17 17:29:49.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.478 -07 000000480 INF: FPGA: Recv ZSGSRD 30088
17-03-17 17:29:49.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:29:49.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.478 -07 000000482 INF: FPGA: Recv ZSGSRD 30097
17-03-17 17:29:49.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:29:49.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.488 -07 000000608 INF: FPGA: Recv ZSGSRD 30085
17-03-17 17:29:49.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.498 -07 000000541 INF: FPGA: Recv ZSGSRD 30091
17-03-17 17:29:49.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.508 -07 000000482 INF: FPGA: Recv ZSGSRD 30097
17-03-17 17:29:49.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.518 -07 000000608 INF: FPGA: Recv ZSGSRD 30094
17-03-17 17:29:49.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.528 -07 000000482 INF: FPGA: Recv ZSGSRD 30099
17-03-17 17:29:49.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.538 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.538 -07 000000608 INF: FPGA: Recv ZSGSRD 30094
17-03-17 17:29:49.548 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.548 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.548 -07 000000431 INF: FPGA: Recv ZSGSRD 30089
17-03-17 17:29:49.558 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.558 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:49.558 -07 000000608 INF: FPGA: Recv ZSGSRD 30088
17-03-17 17:29:49.568 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.568 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:49.568 -07 000000541 INF: FPGA: Recv ZPIEZORD 26012
17-03-17 17:29:49.578 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:49.578 -07 000000458 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.454 V. Piezo Error = -9.0 V.
17-03-17 17:29:49.578 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30092 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30092 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30085 (-132.8 uncal um), Max = 30099 (-132.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:29:49.578 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30092, posNoise = 7, negNoise = 7
17-03-17 17:29:49.578 -07 000000458 INF: Z Motor: After move to -0.133628, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:49.578 -07 000000458 INF: Z Motor: Settle wait time = 1423 ms, measure time = 103 ms (allowed 150 ms), total time = 1526 ms
17-03-17 17:29:49.578 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:49.628 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 17:29:49.628 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:49.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:49.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:49.628 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:49.628 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:49.628 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:49.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:49.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:49.628 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:49.638 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:49.638 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:49.648 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:29:49.648 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:29:49.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:49.698 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:49.898 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:49.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:49.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:49.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174474512, 0x0, 559484976) start.
17-03-17 17:29:49.938 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:49.938 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:49.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:29:50.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1174474512, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 17:29:50.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:50.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:29:50.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 17:29:50.038 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:50.038 -07 000000431 INF: Autofocus start
17-03-17 17:29:50.038 -07 000000431 INF: MeasureProfile start
17-03-17 17:29:50.038 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:50.048 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:29:50.048 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:50.048 -07 000000431 INF: MeasureProfile done
17-03-17 17:29:50.048 -07 000000431 INF: X=-112  Z correction [um]=-0.5485987
17-03-17 17:29:50.048 -07 000000431 INF: Autofocus finished
17-03-17 17:29:50.248 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:50.248 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:50.248 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133640743781006. ----------
17-03-17 17:29:50.248 -07 000000610 INF: Cycle	1	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:50.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27583, sync = True, waitForSettling = True)
17-03-17 17:29:50.258 -07 000000610 INF: Z Motor: Moving to -0.126267 mm, started at -0.133641 mm, distance = 7.37 um
17-03-17 17:29:50.258 -07 000000610 INF: FPGA: Xmit ZDACW 27583\n [Z Motor]
17-03-17 17:29:50.258 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 17:29:50.268 -07 000000610 INF: FPGA: 'ZDACW 27583' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:50.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:50.268 -07 000000431 INF: FPGA: Recv ZDACR 27583
17-03-17 17:29:50.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.428 -07 000000541 INF: FPGA: Recv ZSGSRD 28946
17-03-17 17:29:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.438 -07 000000458 INF: FPGA: Recv ZSGSRD 28940
17-03-17 17:29:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.448 -07 000000482 INF: FPGA: Recv ZSGSRD 28948
17-03-17 17:29:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.458 -07 000000458 INF: FPGA: Recv ZSGSRD 28953
17-03-17 17:29:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.468 -07 000000608 INF: FPGA: Recv ZSGSRD 28944
17-03-17 17:29:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.478 -07 000000482 INF: FPGA: Recv ZSGSRD 28944
17-03-17 17:29:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.488 -07 000000482 INF: FPGA: Recv ZSGSRD 28941
17-03-17 17:29:50.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.498 -07 000000608 INF: FPGA: Recv ZSGSRD 28952
17-03-17 17:29:50.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.508 -07 000000431 INF: FPGA: Recv ZSGSRD 28941
17-03-17 17:29:50.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:50.518 -07 000000482 INF: FPGA: Recv ZSGSRD 28938
17-03-17 17:29:50.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:50.528 -07 000000482 INF: FPGA: Recv ZPIEZORD 24555
17-03-17 17:29:50.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:50.538 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.209 V. Piezo Error = -9.6 V.
17-03-17 17:29:50.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.3 um, Read 10 ADC samples: Avg = 28945 (-125.5 uncal um), Error = 0.8 uncal um, Median = 28944 (-125.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 28938 (-125.5 uncal um), Max = 28953 (-125.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:29:50.538 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28945, posNoise = 8, negNoise = 7
17-03-17 17:29:50.538 -07 000000610 INF: Z Motor: After move to -0.126267, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:50.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:29:50.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:50.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:50.538 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:50.538 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:50.538 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:50.538 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:50.538 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:29:50.538 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:50.538 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:50.538 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:50.548 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:50.548 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:50.548 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:50.548 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:50.548 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:29:50.548 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:50.558 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:29:50.558 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:29:50.558 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:29:50.558 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:50.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27760 150\n [Camera]
17-03-17 17:29:50.668 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.102394,
17-03-17 17:29:50.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:51.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:51.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:51.148 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:51.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:51.148 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:51.148 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:51.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) start.
17-03-17 17:29:51.148 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:51.148 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:51.148 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:29:51.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27760 775
17-03-17 17:29:51.488 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:51.498 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:29:51.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 0. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=28, R2=34, Total=62. Warn if over 250 bubbles per interval.
17-03-17 17:29:51.528 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:29:51.528 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:29:51.528 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:51.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:29:51.528 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:29:51.528 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:51.538 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:29:51.538 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:29:51.538 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:29:51.538 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:29:51.678 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:51.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:51.678 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:51.678 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:51.678 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:29:51.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:51.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:51.688 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:51.688 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:51.688 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:29:51.868 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:51.868 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:51.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27760 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:29:51.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:29:51.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.126272172454406. ------
17-03-17 17:29:52.008 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13308 mm
17-03-17 17:29:52.008 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:29:52.008 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:52.008 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:52.008 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:29:52.008 -07 000000541 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 17:29:52.008 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29071, sync = True, waitForSettling = False)
17-03-17 17:29:52.008 -07 000000458 INF: Z Motor: Moving to -0.133079 mm, started at -0.126272 mm, distance = -6.81 um
17-03-17 17:29:52.018 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:52.018 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:52.018 -07 000000608 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:29:52.028 -07 000000458 INF: FPGA: Xmit ZDACW 29071\n [Z Motor]
17-03-17 17:29:52.028 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:29:52.028 -07 000000541 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:52.028 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:29:52.028 -07 000000541 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:29:52.028 -07 000000541 INF: Y Motor: Moving 1350 steps-29
17-03-17 17:29:52.038 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:29:52.038 -07 000000458 INF: FPGA: 'ZDACW 29071' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:29:52.048 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:29:52.058 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:52.058 -07 000000462 INF: FPGA: Recv ZDACR 29071
17-03-17 17:29:52.068 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:29:52.068 -07 000000458 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:29:52.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:29:52.078 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:29:52.078 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:52.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 17:29:52.078 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:29:52.078 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:52.088 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:52.088 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:29:52.088 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:29:52.088 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 17:29:52.238 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:29:52.238 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:29:52.418 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 17:29:52.418 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 17:29:52.438 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:52.448 -07 000000475 INF: FPGA: Recv YRDPOS 153256
17-03-17 17:29:52.448 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:29:52.448 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:52.448 -07 000000541 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 17:29:52.448 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 17:29:53.398 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:29:53.398 -07 000000462 INF: FPGA: Recv YRDPOS 153256
17-03-17 17:29:53.408 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:53.408 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:29:53.418 -07 000000541 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:29:53.418 -07 000000541 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:29:53.418 -07 000000541 INF: Y Motor: Moved to 74.8320 after 1408 ms (table move)
17-03-17 17:29:53.418 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133079 mm (DAC = 29071)
17-03-17 17:29:53.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.428 -07 000000462 INF: FPGA: Recv ZSGSRD 30010
17-03-17 17:29:53.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 17:29:53.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.428 -07 000000482 INF: FPGA: Recv ZSGSRD 29999
17-03-17 17:29:53.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:29:53.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.438 -07 000000482 INF: FPGA: Recv ZSGSRD 29999
17-03-17 17:29:53.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.448 -07 000000462 INF: FPGA: Recv ZSGSRD 30004
17-03-17 17:29:53.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.458 -07 000000482 INF: FPGA: Recv ZSGSRD 29996
17-03-17 17:29:53.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.468 -07 000000482 INF: FPGA: Recv ZSGSRD 29998
17-03-17 17:29:53.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.478 -07 000000482 INF: FPGA: Recv ZSGSRD 30008
17-03-17 17:29:53.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.488 -07 000000462 INF: FPGA: Recv ZSGSRD 30016
17-03-17 17:29:53.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.498 -07 000000462 INF: FPGA: Recv ZSGSRD 30008
17-03-17 17:29:53.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.508 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:53.508 -07 000000462 INF: FPGA: Recv ZSGSRD 30012
17-03-17 17:29:53.518 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.518 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:53.518 -07 000000462 INF: FPGA: Recv ZPIEZORD 25944
17-03-17 17:29:53.528 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:53.528 -07 000000382 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -8.9 V.
17-03-17 17:29:53.528 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30005 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30006 (-132.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29996 (-132.2 uncal um), Max = 30016 (-132.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:29:53.528 -07 000000382 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30005, posNoise = 11, negNoise = 9
17-03-17 17:29:53.528 -07 000000382 INF: Z Motor: After move to -0.133079, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:53.528 -07 000000382 INF: Z Motor: Settle wait time = 1412 ms, measure time = 102 ms (allowed 150 ms), total time = 1514 ms
17-03-17 17:29:53.528 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:29:53.578 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1568 ms
17-03-17 17:29:53.578 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:29:53.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:53.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:53.578 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:53.578 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:53.578 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:29:53.578 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:53.578 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:53.578 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:29:53.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:29:53.588 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:29:53.588 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:29:53.598 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:29:53.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:29:53.638 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:29:53.838 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:29:53.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:29:53.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:29:53.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:29:53.888 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:29:53.888 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:29:53.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 288 ms overall
17-03-17 17:29:53.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:29:53.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:53.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:29:53.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:29:53.988 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:29:53.988 -07 000000458 INF: Autofocus start
17-03-17 17:29:53.988 -07 000000458 INF: MeasureProfile start
17-03-17 17:29:53.988 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:29:53.998 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:29:53.998 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:29:53.998 -07 000000458 INF: MeasureProfile done
17-03-17 17:29:53.998 -07 000000458 INF: X=-112  Z correction [um]=-0.5485987
17-03-17 17:29:53.998 -07 000000458 INF: Autofocus finished
17-03-17 17:29:54.198 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:29:54.198 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:29:54.198 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133081837324672. ----------
17-03-17 17:29:54.198 -07 000000610 INF: Cycle	1	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:29:54.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27464, sync = True, waitForSettling = True)
17-03-17 17:29:54.208 -07 000000610 INF: Z Motor: Moving to -0.125722 mm, started at -0.133082 mm, distance = 7.36 um
17-03-17 17:29:54.208 -07 000000610 INF: FPGA: Xmit ZDACW 27464\n [Z Motor]
17-03-17 17:29:54.208 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:29:54.218 -07 000000610 INF: FPGA: 'ZDACW 27464' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:29:54.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:29:54.218 -07 000000462 INF: FPGA: Recv ZDACR 27464
17-03-17 17:29:54.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:29:54.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.378 -07 000000462 INF: FPGA: Recv ZSGSRD 28862
17-03-17 17:29:54.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:29:54.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.388 -07 000000502 INF: FPGA: Recv ZSGSRD 28863
17-03-17 17:29:54.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.398 -07 000000475 INF: FPGA: Recv ZSGSRD 28860
17-03-17 17:29:54.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.408 -07 000000382 INF: FPGA: Recv ZSGSRD 28860
17-03-17 17:29:54.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.418 -07 000000551 INF: FPGA: Recv ZSGSRD 28857
17-03-17 17:29:54.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.428 -07 000000551 INF: FPGA: Recv ZSGSRD 28868
17-03-17 17:29:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.438 -07 000000502 INF: FPGA: Recv ZSGSRD 28865
17-03-17 17:29:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.448 -07 000000551 INF: FPGA: Recv ZSGSRD 28853
17-03-17 17:29:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.458 -07 000000462 INF: FPGA: Recv ZSGSRD 28862
17-03-17 17:29:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:29:54.468 -07 000000502 INF: FPGA: Recv ZSGSRD 28857
17-03-17 17:29:54.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:29:54.478 -07 000000382 INF: FPGA: Recv ZPIEZORD 24451
17-03-17 17:29:54.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:29:54.488 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 41.9 V, since DAC is at 4.191 V. Piezo Error = -9.7 V.
17-03-17 17:29:54.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -125.7 um, Read 10 ADC samples: Avg = 28861 (-125.0 uncal um), Error = 0.8 uncal um, Median = 28861 (-125.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 28853 (-124.9 uncal um), Max = 28868 (-125.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:29:54.488 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28861, posNoise = 7, negNoise = 8
17-03-17 17:29:54.488 -07 000000610 INF: Z Motor: After move to -0.125722, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:29:54.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:29:54.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:29:54.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:29:54.488 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:29:54.488 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:29:54.488 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:29:54.488 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:29:54.488 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:29:54.488 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:29:54.488 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:29:54.488 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:29:54.488 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:29:54.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:29:54.498 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:29:54.498 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:29:54.498 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:29:54.498 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:29:54.498 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:29:54.498 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:29:54.508 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:29:54.508 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:29:54.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27640 150\n [Camera]
17-03-17 17:29:54.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:29:55.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:29:55.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:29:55.098 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:55.098 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:29:55.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:29:55.098 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:55.108 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:55.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:29:55.108 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:55.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:29:55.288 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27640 775
17-03-17 17:29:55.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:29:55.478 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:29:55.478 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:29:55.478 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:55.478 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:29:55.478 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:29:55.478 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:55.488 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:29:55.488 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:29:55.488 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:29:55.488 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:29:55.628 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:29:55.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:29:55.628 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:29:55.628 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:29:55.628 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:29:55.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:29:55.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:29:55.638 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:29:55.638 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:29:55.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1103629984, 0x0, 418435064) start.
17-03-17 17:29:55.818 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:29:55.818 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:29:55.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27640 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:29:56.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1103629984, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:29:56.008 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:29:56.008 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:56.018 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:29:56.018 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:29:56.018 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:29:56.018 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:29:56.018 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:29:56.018 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:29:56.018 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:29:56.028 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:29:56.028 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636,
17-03-17 17:29:56.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 17:29:56.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:29:56.108 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 17:29:56.228 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 17:29:56.228 -07 000000610 INF: Imaging Cycle 1: ScanTilesCommand Cycle 1 time end. Duration was 593847 ms.
17-03-17 17:29:56.228 -07 000000610 INF: =================== Cycle #1 ===================
17-03-17 17:29:56.228 -07 000000610 INF: ===================  ===================
17-03-17 17:29:56.228 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:29:56.238 -07 000000462 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 17:29:56.238 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:29:56.238 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 17:29:56.238 -07 000000618 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 1, FrontChillerTemperature: 4.114636, FrontChillerHeatSinkTemperature: 0.001832, AmbientTemperature: 18.4512, FlowCellCompartmentTemperature: 22.00708, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 17.88683, GreenLEDSensorTemperature: 27.44617, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 17:29:56.238 -07 000000442 INF: FlowcellCartridgeRFIDSensor: Saving Run ID to RFID tag: InstrumentID 'M03814', Run Number 172, Reagent Serial Number 'MS4875354-600V3'
17-03-17 17:29:56.238 -07 000000442 INF: FPGA: Xmit RFID1BLKWR 0 20 00AC19D0\n [FlowcellCartridgeRFIDSensor]
17-03-17 17:29:56.238 -07 000000610 WRN: Offset file 'D:\Illumina\MiSeqFGxTemp\170317_M03814_0172_000000000-B2K79\Data\Intensities\Offsets\offsets.txt' does not exist.
17-03-17 17:29:56.238 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.