17-03-17 18:57:21.398 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:57:21.398 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:57:21.398 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 18:57:21.398 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:21.408 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:57:21.408 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:57:21.408 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:21.408 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:57:21.408 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:57:21.408 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:57:21.518 -07 000000608 INF: FPGA: Recv YMVTO 154377 871
17-03-17 18:57:21.518 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 116 ms overall
17-03-17 18:57:21.518 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:57:21.518 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 18:57:21.518 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 18:57:21.638 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:23.218 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.977204,
17-03-17 18:57:24.518 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:57:24.518 -07 000000541 INF: FPGA: Recv YRDPOS 154380
17-03-17 18:57:24.528 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:57:24.528 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:57:24.538 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:57:24.538 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 18:57:24.538 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3138 ms
17-03-17 18:57:24.548 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 60° ===================
17-03-17 18:57:24.548 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:57:24.688 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:57:24.688 -07 000000551 INF: FPGA: Recv TEC2EN 
17-03-17 18:57:24.698 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:57:24.698 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 60° ===================
17-03-17 18:57:24.698 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:57:24.698 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:57:24.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:24.728 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:57:24.728 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:57:24.728 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:57:25.028 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:57:25.048 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:57:25.048 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:57:25.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:25.118 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:57:25.118 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:57:25.218 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:57:25.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:57:25.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:25.248 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:57:25.248 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:57:25.248 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:57:25.378 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:57:25.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:26.638 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:26.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:28.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:28.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:28.578 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.988112,
17-03-17 18:57:28.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:29.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:29.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:29.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:29.478 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:57:29.478 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:57:29.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:29.638 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:57:29.638 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:57:29.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:29.798 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:57:29.798 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:57:29.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:57:29.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:57:29.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:30.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:30.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:30.418 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:57:30.418 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:57:31.638 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:57:31.638 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:57:31.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:31.638 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:31.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:31.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:57:31.658 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:57:31.658 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:57:31.788 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:57:31.808 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:57:31.808 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:57:31.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:31.878 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:57:31.878 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:57:31.978 -07 000000610 INF: =================== Cycle #20, Pumping Reagent CMS (4) ===================
17-03-17 18:57:31.978 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:57:31.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:32.008 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:57:32.008 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:57:32.008 -07 000000610 INF: =================== Cycle #20, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:57:32.138 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:57:32.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:33.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:33.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:33.938 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.008536,
17-03-17 18:57:34.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:34.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:34.098 -07 000000610 INF: LanePump: Waited 1918 ms for pump motion to complete
17-03-17 18:57:34.098 -07 000000610 INF: =================== Cycle #20, Pumping Reagent CMS (4) ===================
17-03-17 18:57:34.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:34.258 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:57:34.258 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:57:34.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:34.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:57:34.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:57:34.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:57:34.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:57:34.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:35.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:35.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:35.038 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:57:35.038 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:57:36.258 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:57:36.258 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:57:36.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:36.278 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:57:36.278 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:57:36.278 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:57:36.428 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:57:36.448 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:57:36.448 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:57:36.498 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:36.518 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:57:36.518 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:57:36.618 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:57:36.618 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:57:36.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:36.638 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:36.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:36.648 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:57:36.648 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:57:36.648 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:57:36.778 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:57:36.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:37.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:37.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:37.718 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:57:37.718 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:57:37.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:37.878 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:57:37.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:57:38.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:38.038 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:57:38.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:57:38.038 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:57:38.168 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:57:38.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:38.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:38.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:38.658 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:57:38.658 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:57:38.658 -07 000000502 INF: WaitCommand(10000) start
17-03-17 18:57:38.658 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:57:38.658 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:57:39.298 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.997626,
17-03-17 18:57:39.878 -07 000000431 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:57:39.878 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 18:57:39.908 -07 000000431 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:57:39.908 -07 000000431 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:57:40.038 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:57:40.078 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:41.608 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:41.638 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:41.638 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:41.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:42.058 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:42.088 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:42.088 -07 000000431 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 18:57:42.088 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:57:42.088 -07 000000431 INF: ===================  ===================
17-03-17 18:57:44.658 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.005817,
17-03-17 18:57:46.638 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:46.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:48.668 -07 000000502 INF: WaitCommand(10000) end
17-03-17 18:57:48.668 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:57:48.668 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:57:48.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:48.698 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:57:48.698 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:57:48.698 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:57:48.828 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:57:48.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:50.018 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.005817,
17-03-17 18:57:51.638 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:54.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:55.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:55.378 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.03576,
17-03-17 18:57:55.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:55.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:55.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:55.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:56.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:56.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:57:56.638 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:57:56.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:57:56.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:56.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:56.828 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:57:56.828 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:57:56.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:56.988 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:57:56.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:57:57.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:57.148 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:57:57.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:57:57.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:57:57.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:57:57.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:57.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:57:57.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:57:57.768 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:57:57.768 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:57:58.988 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:57:58.988 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:57:58.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:59.008 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:57:59.008 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:57:59.008 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:57:59.218 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:57:59.238 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:57:59.238 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:57:59.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:57:59.308 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:57:59.308 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:57:59.408 -07 000000610 INF: =================== Cycle #20, Pumping Reagent IMT (1) ===================
17-03-17 18:57:59.408 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:57:59.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:57:59.438 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:57:59.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:57:59.438 -07 000000610 INF: =================== Cycle #20, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:57:59.568 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:57:59.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:58:00.738 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.023489,
17-03-17 18:58:01.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:01.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:58:01.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:01.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:01.528 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:58:01.528 -07 000000610 INF: =================== Cycle #20, Pumping Reagent IMT (1) ===================
17-03-17 18:58:01.638 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:01.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:01.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:01.688 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:58:01.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:58:01.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:01.848 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:58:01.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:58:01.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:58:01.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:58:02.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:02.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:02.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:02.468 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:58:02.468 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:58:03.688 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:58:03.688 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:58:03.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:58:03.708 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:58:03.708 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:58:03.708 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:58:03.938 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:58:03.958 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:58:03.958 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:58:04.008 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:58:04.028 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:58:04.028 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:58:04.128 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:58:04.128 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:58:04.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:04.158 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:58:04.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:58:04.158 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:58:04.288 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:58:04.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:58:05.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:05.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:05.228 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:58:05.228 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:58:05.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:05.388 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:58:05.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:58:05.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:05.548 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:58:05.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:58:05.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:58:05.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:58:05.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:06.098 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.005817,
17-03-17 18:58:06.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:06.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:06.168 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:58:06.168 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:58:06.168 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 65° ===================
17-03-17 18:58:06.168 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:58:06.168 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:58:06.168 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:58:06.178 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:58:06.178 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:58:06.178 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-17 18:58:06.188 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:58:06.188 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 65° ===================
17-03-17 18:58:06.188 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:58:06.188 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:58:06.638 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:06.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:11.458 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.954032,
17-03-17 18:58:11.638 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:11.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:16.638 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:16.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:16.818 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.99219,
17-03-17 18:58:21.638 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:22.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.007176,
17-03-17 18:58:26.648 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:26.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:27.538 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.999021,
17-03-17 18:58:31.638 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:31.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:32.898 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.024884,
17-03-17 18:58:36.198 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:58:36.198 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:58:36.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:58:36.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:36.328 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:58:36.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:58:36.328 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:58:36.458 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:58:36.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:58:36.638 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:36.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:37.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:37.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:37.068 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:58:37.068 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:58:37.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:37.228 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:58:37.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:58:37.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:58:37.388 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:58:37.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:58:37.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:58:37.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:58:37.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:37.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:38.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:38.008 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:58:38.008 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:58:38.008 -07 000000438 INF: WaitCommand(30000) start
17-03-17 18:58:38.008 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:58:38.008 -07 000000476 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:58:38.258 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.037119,
17-03-17 18:58:39.228 -07 000000476 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:58:39.228 -07 000000476 INF: LanePump: Xmit /1?\r
17-03-17 18:58:39.258 -07 000000476 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:58:39.258 -07 000000476 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:58:39.388 -07 000000476 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:58:39.428 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:58:41.638 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:41.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:41.768 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:41.798 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:58:42.218 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 18:58:42.248 -07 000000476 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:58:42.248 -07 000000476 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:58:42.248 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:58:42.248 -07 000000476 INF: ===================  ===================
17-03-17 18:58:43.618 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.03576,
17-03-17 18:58:46.638 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:46.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:48.978 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.985358,
17-03-17 18:58:51.638 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:54.338 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.988112,
17-03-17 18:58:56.638 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:58:56.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:58:59.698 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.016692,
17-03-17 18:59:01.638 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:01.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:59:05.058 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.018051,
17-03-17 18:59:06.638 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:06.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=213, R2=222, Total=435. Warn if over 250 bubbles per interval.
17-03-17 18:59:08.018 -07 000000438 INF: WaitCommand(30000) end
17-03-17 18:59:08.018 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 22° ===================
17-03-17 18:59:08.018 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:59:08.018 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:59:08.028 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:59:08.028 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:59:08.028 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:59:08.028 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 18:59:08.038 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:08.038 -07 000000610 INF: =================== Cycle #20, Flow Cell Temp 22° ===================
17-03-17 18:59:08.038 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:59:08.038 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:59:08.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:59:08.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:08.078 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:59:08.078 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:59:08.078 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:59:08.208 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:59:08.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:10.418 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.990831,
17-03-17 18:59:11.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:11.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:11.648 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 6
17-03-17 18:59:11.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=6, R2=1, Total=7. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=219, R2=223, Total=442. Warn if over 250 bubbles per interval.
17-03-17 18:59:11.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:11.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:12.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:12.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:12.308 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:59:12.308 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:59:12.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:12.468 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:59:12.468 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:59:12.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:12.628 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:59:12.628 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:59:12.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:59:12.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:59:12.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:13.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:13.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:13.248 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:59:13.248 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:59:14.468 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:59:14.468 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:59:14.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:59:14.488 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:59:14.488 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:59:14.488 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:59:14.638 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:59:14.658 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:59:14.658 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:59:14.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:59:14.728 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:59:14.728 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:59:14.828 -07 000000610 INF: =================== Cycle #20, Pumping Reagent USM (2) ===================
17-03-17 18:59:14.828 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:59:14.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:14.858 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:59:14.858 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:59:14.858 -07 000000610 INF: =================== Cycle #20, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:59:14.988 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:59:15.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:15.778 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.004458,
17-03-17 18:59:16.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:16.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:16.648 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 2
17-03-17 18:59:16.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=2, R2=5, Total=7. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:16.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:16.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:16.948 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:59:16.948 -07 000000610 INF: =================== Cycle #20, Pumping Reagent USM (2) ===================
17-03-17 18:59:17.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:17.108 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:59:17.108 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:59:17.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:17.268 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:59:17.268 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:59:17.268 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:59:17.398 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:59:17.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:17.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:17.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:17.888 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:59:17.888 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:59:19.108 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:59:19.108 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:59:19.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:59:19.128 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:59:19.128 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:59:19.128 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:59:19.278 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:59:19.298 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:59:19.298 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:59:19.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:59:19.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:59:19.368 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:59:19.468 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:59:19.468 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:59:19.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:19.498 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:59:19.498 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:59:19.498 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:59:19.628 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:59:19.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:20.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:20.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:20.568 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:59:20.568 -07 000000610 INF: =================== Cycle #20, Pumping Reagent PR2 (3) ===================
17-03-17 18:59:20.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:20.728 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:59:20.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:59:20.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:59:20.888 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:59:20.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:59:20.888 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:59:21.018 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:59:21.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:21.138 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.028963,
17-03-17 18:59:21.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:21.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:21.508 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:59:21.508 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 18:59:21.508 -07 000000462 INF: WaitCommand(10000) start
17-03-17 18:59:21.508 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:59:21.508 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:59:21.648 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:21.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:22.728 -07 000000502 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:59:22.728 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 18:59:22.758 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:59:22.758 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:59:22.888 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:59:22.928 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:24.458 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:24.488 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:59:24.908 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 18:59:24.938 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:59:24.938 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:59:24.938 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:59:24.938 -07 000000502 INF: ===================  ===================
17-03-17 18:59:26.498 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.012614,
17-03-17 18:59:26.648 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:26.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:31.518 -07 000000462 INF: WaitCommand(10000) end
17-03-17 18:59:31.518 -07 000000610 INF: =================== Cycle #20, Imaging ===================
17-03-17 18:59:31.518 -07 000000610 INF: Imaging Cycle 20: ScanTilesCommand Cycle 20 time start.
17-03-17 18:59:31.518 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:59:31.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:59:31.548 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:59:31.548 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:59:31.548 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:59:31.648 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:31.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:31.848 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:59:31.858 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.975845,
17-03-17 18:59:31.868 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:59:31.868 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:59:31.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:59:31.938 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:59:31.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:31.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:31.938 -07 000000551 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:59:31.938 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:31.938 -07 000000551 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:59:31.938 -07 000000433 INF: FPGA: Recv EXLED1ON 
17-03-17 18:59:31.948 -07 000000551 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:59:31.948 -07 000000551 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:59:31.948 -07 000000502 INF: FPGA: Recv EXLED1ADCR 23124
17-03-17 18:59:31.958 -07 000000551 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:31.958 -07 000000551 INF: RedLED: Using Red data: Photodiode ADC 23124 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-17 18:59:31.958 -07 000000551 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:59:31.958 -07 000000512 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:59:31.968 -07 000000551 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:31.968 -07 000000551 INF: RedLED: LED was on for 19 ms
17-03-17 18:59:31.968 -07 000000551 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 18:59:31.968 -07 000000551 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:59:31.968 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:31.968 -07 000000551 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:59:31.968 -07 000000512 INF: FPGA: Recv EXLED2ON 
17-03-17 18:59:31.978 -07 000000551 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:59:31.978 -07 000000551 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:59:31.978 -07 000000561 INF: FPGA: Recv EXLED1ADCR 2102
17-03-17 18:59:31.988 -07 000000551 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:31.988 -07 000000551 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-17 18:59:31.988 -07 000000551 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:59:31.988 -07 000000382 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:59:31.998 -07 000000551 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:31.998 -07 000000551 INF: GreenLED: LED was on for 19 ms
17-03-17 18:59:31.998 -07 000000551 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 18:59:31.998 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:59:31.998 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-17 18:59:32.008 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:59:32.008 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:59:32.508 -07 000000438 INF: FPGA: Recv EMOUT
17-03-17 18:59:32.508 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:59:32.508 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:59:32.508 -07 000000476 INF: FPGA: Recv EMCUR 
17-03-17 18:59:32.518 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:59:32.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:59:32.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127338591669938. ------
17-03-17 18:59:32.518 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17929 mm
17-03-17 18:59:32.518 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:32.518 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:59:32.518 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:59:32.518 -07 000000623 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 18:59:32.528 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:59:32.528 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:59:32.528 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 39166, sync = True, waitForSettling = False)
17-03-17 18:59:32.528 -07 000000561 INF: Z Motor: Moving to -0.179290 mm, started at -0.127339 mm, distance = -51.95 um
17-03-17 18:59:32.528 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:32.528 -07 000000433 INF: FPGA: Recv YRDPOS 154381
17-03-17 18:59:32.538 -07 000000623 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:32.538 -07 000000623 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:32.538 -07 000000561 INF: FPGA: Xmit ZDACW 39166\n [Z Motor]
17-03-17 18:59:32.538 -07 000000623 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:59:32.538 -07 000000623 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:59:32.538 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:59:32.548 -07 000000561 INF: FPGA: 'ZDACW 39166' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:59:32.548 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:59:32.558 -07 000000623 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:59:32.568 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:32.568 -07 000000502 INF: FPGA: Recv ZDACR 39166
17-03-17 18:59:32.578 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:59:32.578 -07 000000561 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:59:32.748 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:59:32.748 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:59:34.238 -07 000000512 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 18:59:34.238 -07 000000623 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1703 ms overall
17-03-17 18:59:34.238 -07 000000623 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:59:34.238 -07 000000623 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:59:34.238 -07 000000623 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 18:59:36.648 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:37.088 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:37.088 -07 000000561 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:59:37.098 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:37.098 -07 000000623 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:37.118 -07 000000623 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:59:37.118 -07 000000623 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:59:37.118 -07 000000623 INF: Y Motor: Moved to 59.9116 after 4592 ms
17-03-17 18:59:37.118 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179290 mm (DAC = 39166)
17-03-17 18:59:37.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.118 -07 000000623 INF: FPGA: Recv ZSGSRD 37206
17-03-17 18:59:37.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:59:37.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.128 -07 000000561 INF: FPGA: Recv ZSGSRD 37193
17-03-17 18:59:37.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.138 -07 000000476 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:59:37.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.148 -07 000000431 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:59:37.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.158 -07 000000623 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:59:37.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.168 -07 000000382 INF: FPGA: Recv ZSGSRD 37200
17-03-17 18:59:37.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.178 -07 000000476 INF: FPGA: Recv ZSGSRD 37200
17-03-17 18:59:37.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.188 -07 000000433 INF: FPGA: Recv ZSGSRD 37195
17-03-17 18:59:37.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.198 -07 000000502 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:59:37.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:37.218 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:37.218 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.975845,
17-03-17 18:59:37.218 -07 000000512 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:59:37.228 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:59:37.238 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:37.238 -07 000000551 INF: FPGA: Recv ZPIEZORD 33587
17-03-17 18:59:37.248 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:59:37.248 -07 000000569 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.976 V. Piezo Error = -8.0 V.
17-03-17 18:59:37.248 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37198 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37199 (-178.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37193 (-178.4 uncal um), Max = 37206 (-178.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:59:37.248 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37198, posNoise = 8, negNoise = 5
17-03-17 18:59:37.248 -07 000000569 INF: Z Motor: After move to -0.179290, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:37.248 -07 000000569 INF: Z Motor: Settle wait time = 4595 ms, measure time = 125 ms (allowed 150 ms), total time = 4720 ms
17-03-17 18:59:37.248 -07 000000569 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-17 18:59:37.278 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 18:59:37.278 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:59:37.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:37.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:37.278 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:37.278 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:37.278 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:59:37.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:37.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:59:37.278 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:59:37.308 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:59:37.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:59:37.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:59:37.308 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:59:37.328 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:59:37.328 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 18:59:37.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:59:37.368 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:59:37.568 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:59:37.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:59:37.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:59:37.688 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:59:37.688 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:59:37.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-17 18:59:37.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 358 ms to get response, and 365 ms overall
17-03-17 18:59:37.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:59:37.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:37.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:59:37.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 245 ms.
17-03-17 18:59:37.888 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:59:37.888 -07 000000623 INF: Image SNR check: start
17-03-17 18:59:37.888 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:59:37.898 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:59:37.898 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:59:37.898 -07 000000623 INF: Image SNR check: pass  [peak (Max-Min)=68.89]
17-03-17 18:59:37.898 -07 000000623 INF: Autofocus start
17-03-17 18:59:37.898 -07 000000623 INF: MeasureProfile start
17-03-17 18:59:37.908 -07 000000623 INF: MeasureProfile done
17-03-17 18:59:37.908 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:59:37.908 -07 000000623 INF: Autofocus finished
17-03-17 18:59:38.098 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:59:38.098 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:59:38.098 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179291195260359. ----------
17-03-17 18:59:38.098 -07 000000610 INF: Cycle	20	Tile	1	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 18:59:38.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37699, sync = True, waitForSettling = True)
17-03-17 18:59:38.108 -07 000000610 INF: Z Motor: Moving to -0.172575 mm, started at -0.179291 mm, distance = 6.72 um
17-03-17 18:59:38.108 -07 000000610 INF: FPGA: Xmit ZDACW 37699\n [Z Motor]
17-03-17 18:59:38.108 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:59:38.118 -07 000000610 INF: FPGA: 'ZDACW 37699' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:38.118 -07 000000551 INF: FPGA: Recv ZDACR 37699
17-03-17 18:59:38.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:59:38.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.278 -07 000000569 INF: FPGA: Recv ZSGSRD 36154
17-03-17 18:59:38.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:38.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36156
17-03-17 18:59:38.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.298 -07 000000433 INF: FPGA: Recv ZSGSRD 36155
17-03-17 18:59:38.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.308 -07 000000623 INF: FPGA: Recv ZSGSRD 36153
17-03-17 18:59:38.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.318 -07 000000551 INF: FPGA: Recv ZSGSRD 36148
17-03-17 18:59:38.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.338 -07 000000541 INF: FPGA: Recv ZSGSRD 36155
17-03-17 18:59:38.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:59:38.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.348 -07 000000502 INF: FPGA: Recv ZSGSRD 36158
17-03-17 18:59:38.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.358 -07 000000569 INF: FPGA: Recv ZSGSRD 36150
17-03-17 18:59:38.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.368 -07 000000608 INF: FPGA: Recv ZSGSRD 36155
17-03-17 18:59:38.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:38.378 -07 000000433 INF: FPGA: Recv ZSGSRD 36160
17-03-17 18:59:38.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:38.388 -07 000000424 INF: FPGA: Recv ZPIEZORD 32209
17-03-17 18:59:38.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:38.398 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.7 V.
17-03-17 18:59:38.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36154 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36155 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36148 (-171.7 uncal um), Max = 36160 (-171.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:59:38.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36154, posNoise = 6, negNoise = 6
17-03-17 18:59:38.398 -07 000000610 INF: Z Motor: After move to -0.172575, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:38.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 18:59:38.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:38.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:38.398 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:38.398 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:59:38.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:59:38.398 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:59:38.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:38.398 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:38.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:59:38.398 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:59:38.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:59:38.398 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:59:38.398 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:59:38.398 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:59:38.408 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:59:38.408 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:59:38.418 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 18:59:38.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:59:38.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:59:38.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:59:38.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:59:38.438 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 18:59:38.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37876 150\n [Camera]
17-03-17 18:59:38.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:59:39.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:59:39.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:59:39.038 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:39.038 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:59:39.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:59:39.038 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:39.038 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:39.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 18:59:39.048 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:39.048 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:59:39.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37876 782
17-03-17 18:59:39.378 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:59:39.438 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:59:39.438 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:59:39.438 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:39.438 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:59:39.438 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:59:39.438 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:39.448 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:59:39.448 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:59:39.448 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:59:39.458 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:59:39.568 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:59:39.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:59:39.568 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:39.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:59:39.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:59:39.678 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:39.678 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:39.678 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) start.
17-03-17 18:59:39.688 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:39.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 18:59:39.768 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-17 18:59:39.768 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:59:39.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37876 150' command took 2 ms to send, 1313 ms to get response, and 1325 ms overall
17-03-17 18:59:39.768 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172949
17-03-17 18:59:39.768 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17295 mm
17-03-17 18:59:39.768 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:39.768 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:59:39.768 -07 000000551 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:59:39.768 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37781, sync = True, waitForSettling = False)
17-03-17 18:59:39.768 -07 000000431 INF: Z Motor: Moving to -0.172950 mm, started at -0.172584 mm, distance = -0.37 um
17-03-17 18:59:39.768 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:39.778 -07 000000431 INF: FPGA: Xmit ZDACW 37781\n [Z Motor]
17-03-17 18:59:39.778 -07 000000433 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:59:39.778 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:59:39.778 -07 000000551 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:39.778 -07 000000551 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:59:39.778 -07 000000551 INF: Y Motor: Moving 1330 steps2
17-03-17 18:59:39.778 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:59:39.788 -07 000000431 INF: FPGA: 'ZDACW 37781' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:59:39.788 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:59:39.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:39.798 -07 000000424 INF: FPGA: Recv ZDACR 37781
17-03-17 18:59:39.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:59:39.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:59:40.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:59:40.078 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:59:40.078 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:40.088 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:59:40.088 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:59:40.088 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:40.088 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:59:40.088 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 18:59:40.098 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:59:40.098 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 18:59:40.168 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:59:40.168 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 389 ms overall
17-03-17 18:59:40.188 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:40.198 -07 000000541 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:59:40.198 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:59:40.198 -07 000000551 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:40.198 -07 000000551 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:59:40.198 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.831 mm, average velocity = 2.136 mm/sec
17-03-17 18:59:41.148 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:41.148 -07 000000424 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:59:41.158 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:41.158 -07 000000551 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:41.168 -07 000000551 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:59:41.178 -07 000000551 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:59:41.178 -07 000000551 INF: Y Motor: Moved to 60.7339 after 1401 ms (table move)
17-03-17 18:59:41.178 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172950 mm (DAC = 37781)
17-03-17 18:59:41.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.178 -07 000000424 INF: FPGA: Recv ZSGSRD 36210
17-03-17 18:59:41.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:59:41.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.188 -07 000000569 INF: FPGA: Recv ZSGSRD 36205
17-03-17 18:59:41.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.198 -07 000000561 INF: FPGA: Recv ZSGSRD 36210
17-03-17 18:59:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.208 -07 000000433 INF: FPGA: Recv ZSGSRD 36210
17-03-17 18:59:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.218 -07 000000623 INF: FPGA: Recv ZSGSRD 36213
17-03-17 18:59:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.228 -07 000000476 INF: FPGA: Recv ZSGSRD 36216
17-03-17 18:59:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.238 -07 000000561 INF: FPGA: Recv ZSGSRD 36212
17-03-17 18:59:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.258 -07 000000608 INF: FPGA: Recv ZSGSRD 36217
17-03-17 18:59:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:59:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.258 -07 000000431 INF: FPGA: Recv ZSGSRD 36213
17-03-17 18:59:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36208
17-03-17 18:59:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:41.278 -07 000000012 INF: FPGA: Recv ZPIEZORD 32283
17-03-17 18:59:41.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.288 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.765 V. Piezo Error = -8.7 V.
17-03-17 18:59:41.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36211 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36211 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36205 (-172.0 uncal um), Max = 36217 (-172.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:59:41.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36211, posNoise = 6, negNoise = 6
17-03-17 18:59:41.288 -07 000000610 INF: Z Motor: After move to -0.172950, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:41.288 -07 000000610 INF: Z Motor: Settle wait time = 1403 ms, measure time = 108 ms (allowed 150 ms), total time = 1511 ms
17-03-17 18:59:41.288 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:59:41.338 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1563 ms
17-03-17 18:59:41.338 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:59:41.338 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.172950497876441. ----------
17-03-17 18:59:41.338 -07 000000610 INF: Cycle	20	Tile	2	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 18:59:41.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37604, sync = True, waitForSettling = True)
17-03-17 18:59:41.338 -07 000000610 INF: Z Motor: Moving to -0.172140 mm, started at -0.172950 mm, distance = 0.81 um
17-03-17 18:59:41.338 -07 000000610 INF: FPGA: Xmit ZDACW 37604\n [Z Motor]
17-03-17 18:59:41.338 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:59:41.348 -07 000000610 INF: FPGA: 'ZDACW 37604' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:59:41.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:41.348 -07 000000438 INF: FPGA: Recv ZDACR 37604
17-03-17 18:59:41.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:59:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.508 -07 000000502 INF: FPGA: Recv ZSGSRD 36083
17-03-17 18:59:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.518 -07 000000424 INF: FPGA: Recv ZSGSRD 36090
17-03-17 18:59:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.528 -07 000000486 INF: FPGA: Recv ZSGSRD 36083
17-03-17 18:59:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.538 -07 000000512 INF: FPGA: Recv ZSGSRD 36087
17-03-17 18:59:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.548 -07 000000608 INF: FPGA: Recv ZSGSRD 36088
17-03-17 18:59:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.558 -07 000000502 INF: FPGA: Recv ZSGSRD 36092
17-03-17 18:59:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.568 -07 000000462 INF: FPGA: Recv ZSGSRD 36084
17-03-17 18:59:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.578 -07 000000486 INF: FPGA: Recv ZSGSRD 36083
17-03-17 18:59:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.588 -07 000000438 INF: FPGA: Recv ZSGSRD 36089
17-03-17 18:59:41.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:59:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:41.598 -07 000000476 INF: FPGA: Recv ZSGSRD 36089
17-03-17 18:59:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:41.608 -07 000000569 INF: FPGA: Recv ZPIEZORD 32150
17-03-17 18:59:41.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:41.618 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.7 V.
17-03-17 18:59:41.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36087 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36088 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36083 (-171.2 uncal um), Max = 36092 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:59:41.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36087, posNoise = 5, negNoise = 4
17-03-17 18:59:41.618 -07 000000610 INF: Z Motor: After move to -0.172140, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:41.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:59:41.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:41.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:41.618 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:41.618 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:59:41.618 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:59:41.618 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:41.618 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:59:41.618 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:41.618 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:59:41.618 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:59:41.618 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:59:41.618 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:59:41.618 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:59:41.618 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:59:41.628 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:59:41.628 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:59:41.638 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:59:41.638 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:59:41.638 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:59:41.638 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:59:41.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37781 150\n [Camera]
17-03-17 18:59:41.648 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:41.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:41.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:59:42.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:59:42.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:59:42.238 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:42.238 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:42.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1113722528, 0x0, 391868352) start.
17-03-17 18:59:42.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:59:42.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:59:42.238 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:42.238 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:42.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1149144792, 0x0, 418435064) start.
17-03-17 18:59:42.428 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37781 782
17-03-17 18:59:42.578 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:59:42.598 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.963579,
17-03-17 18:59:42.638 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1113722528, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:59:42.638 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:59:42.638 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:42.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1149144792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:59:42.638 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:59:42.638 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:42.648 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:42.648 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:59:42.648 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:42.658 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:59:42.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:59:42.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:59:42.778 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:42.778 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:42.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:59:42.778 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:59:42.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:59:42.778 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:42.778 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:42.778 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:59:42.968 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 18:59:42.968 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:59:42.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37781 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-17 18:59:42.968 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172701
17-03-17 18:59:42.968 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17270 mm
17-03-17 18:59:42.968 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:42.978 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:59:42.978 -07 000000438 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:59:42.978 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:42.978 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37726, sync = True, waitForSettling = False)
17-03-17 18:59:42.978 -07 000000561 INF: Z Motor: Moving to -0.172699 mm, started at -0.172154 mm, distance = -0.54 um
17-03-17 18:59:42.978 -07 000000502 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:59:42.988 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:42.988 -07 000000438 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:42.988 -07 000000438 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:59:42.988 -07 000000438 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:59:42.988 -07 000000561 INF: FPGA: Xmit ZDACW 37726\n [Z Motor]
17-03-17 18:59:42.988 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:59:42.998 -07 000000561 INF: FPGA: 'ZDACW 37726' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:59:42.998 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:42.998 -07 000000512 INF: FPGA: Recv ZDACR 37726
17-03-17 18:59:43.008 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:59:43.008 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:43.008 -07 000000561 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 18:59:43.178 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:59:43.178 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:59:43.178 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:43.178 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:59:43.178 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:59:43.178 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:43.178 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:43.178 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:59:43.188 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:43.188 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:59:43.378 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:59:43.378 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:59:43.418 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:43.418 -07 000000415 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:59:43.428 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:59:43.428 -07 000000438 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:43.428 -07 000000438 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:59:43.428 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 18:59:44.378 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:44.378 -07 000000569 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:59:44.388 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:44.388 -07 000000438 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:44.408 -07 000000438 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:59:44.408 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:59:44.408 -07 000000438 INF: Y Motor: Moved to 61.5645 after 1429 ms (table move)
17-03-17 18:59:44.408 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172699 mm (DAC = 37726)
17-03-17 18:59:44.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36164
17-03-17 18:59:44.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:59:44.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.418 -07 000000551 INF: FPGA: Recv ZSGSRD 36172
17-03-17 18:59:44.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.428 -07 000000424 INF: FPGA: Recv ZSGSRD 36172
17-03-17 18:59:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.438 -07 000000486 INF: FPGA: Recv ZSGSRD 36174
17-03-17 18:59:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.448 -07 000000476 INF: FPGA: Recv ZSGSRD 36166
17-03-17 18:59:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.458 -07 000000512 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:59:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.468 -07 000000486 INF: FPGA: Recv ZSGSRD 36183
17-03-17 18:59:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36175
17-03-17 18:59:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.488 -07 000000569 INF: FPGA: Recv ZSGSRD 36171
17-03-17 18:59:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.498 -07 000000476 INF: FPGA: Recv ZSGSRD 36164
17-03-17 18:59:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:44.508 -07 000000512 INF: FPGA: Recv ZPIEZORD 32238
17-03-17 18:59:44.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.518 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.7 V.
17-03-17 18:59:44.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36172 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36172 (-171.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36164 (-171.8 uncal um), Max = 36183 (-171.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:59:44.518 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36172, posNoise = 11, negNoise = 8
17-03-17 18:59:44.518 -07 000000610 INF: Z Motor: After move to -0.172699, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:44.518 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:59:44.518 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:59:44.568 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:59:44.568 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:59:44.568 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.172699953602912. ----------
17-03-17 18:59:44.568 -07 000000610 INF: Cycle	20	Tile	3	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 18:59:44.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37550, sync = True, waitForSettling = True)
17-03-17 18:59:44.568 -07 000000610 INF: Z Motor: Moving to -0.171893 mm, started at -0.172700 mm, distance = 0.81 um
17-03-17 18:59:44.568 -07 000000610 INF: FPGA: Xmit ZDACW 37550\n [Z Motor]
17-03-17 18:59:44.568 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:59:44.578 -07 000000610 INF: FPGA: 'ZDACW 37550' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:59:44.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:44.578 -07 000000623 INF: FPGA: Recv ZDACR 37550
17-03-17 18:59:44.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:59:44.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.738 -07 000000502 INF: FPGA: Recv ZSGSRD 36049
17-03-17 18:59:44.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.748 -07 000000476 INF: FPGA: Recv ZSGSRD 36052
17-03-17 18:59:44.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.758 -07 000000462 INF: FPGA: Recv ZSGSRD 36050
17-03-17 18:59:44.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.768 -07 000000561 INF: FPGA: Recv ZSGSRD 36047
17-03-17 18:59:44.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.778 -07 000000623 INF: FPGA: Recv ZSGSRD 36045
17-03-17 18:59:44.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.788 -07 000000415 INF: FPGA: Recv ZSGSRD 36056
17-03-17 18:59:44.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.798 -07 000000476 INF: FPGA: Recv ZSGSRD 36044
17-03-17 18:59:44.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36046
17-03-17 18:59:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.818 -07 000000561 INF: FPGA: Recv ZSGSRD 36052
17-03-17 18:59:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:44.828 -07 000000502 INF: FPGA: Recv ZSGSRD 36049
17-03-17 18:59:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:44.838 -07 000000569 INF: FPGA: Recv ZPIEZORD 32077
17-03-17 18:59:44.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:44.848 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -8.8 V.
17-03-17 18:59:44.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36049 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36049 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36044 (-171.0 uncal um), Max = 36056 (-171.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:59:44.848 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36049, posNoise = 7, negNoise = 5
17-03-17 18:59:44.848 -07 000000610 INF: Z Motor: After move to -0.171893, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:44.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:59:44.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:44.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:44.848 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:44.848 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:44.848 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:59:44.848 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:59:44.848 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:59:44.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:44.848 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:59:44.848 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:59:44.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:59:44.848 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:59:44.848 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:59:44.848 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:59:44.858 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:59:44.858 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:59:44.868 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 18:59:44.868 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:59:44.868 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:59:44.868 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:59:44.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37726 150\n [Camera]
17-03-17 18:59:45.068 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:59:45.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:59:45.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:59:45.468 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:45.468 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:45.468 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:59:45.478 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:59:45.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:59:45.478 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:45.478 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:45.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:59:45.668 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37726 782
17-03-17 18:59:45.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:59:45.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:59:45.868 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:59:45.868 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:45.878 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:59:45.878 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:59:45.878 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:45.878 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:45.878 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:59:45.878 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:45.888 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:59:46.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:59:46.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:59:46.008 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:46.008 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:46.008 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:59:46.008 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:59:46.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:59:46.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:46.008 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:46.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:59:46.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 18:59:46.198 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:59:46.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37726 150' command took 2 ms to send, 1312 ms to get response, and 1322 ms overall
17-03-17 18:59:46.198 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172124
17-03-17 18:59:46.198 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17212 mm
17-03-17 18:59:46.198 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:46.198 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37601, sync = True, waitForSettling = False)
17-03-17 18:59:46.198 -07 000000551 INF: Z Motor: Moving to -0.172126 mm, started at -0.171910 mm, distance = -0.22 um
17-03-17 18:59:46.198 -07 000000551 INF: FPGA: Xmit ZDACW 37601\n [Z Motor]
17-03-17 18:59:46.198 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:59:46.198 -07 000000476 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:59:46.208 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:46.208 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:59:46.208 -07 000000551 INF: FPGA: 'ZDACW 37601' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:59:46.208 -07 000000382 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:59:46.218 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:59:46.218 -07 000000476 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:46.218 -07 000000476 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:59:46.218 -07 000000476 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:59:46.218 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:46.218 -07 000000486 INF: FPGA: Recv ZDACR 37601
17-03-17 18:59:46.228 -07 000000551 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:59:46.228 -07 000000551 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 18:59:46.228 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:59:46.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:59:46.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:59:46.388 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:46.398 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:46.398 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:59:46.398 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:59:46.398 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:46.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:59:46.398 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:46.408 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:59:46.598 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:59:46.598 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 255 ms to get response, and 388 ms overall
17-03-17 18:59:46.638 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:46.638 -07 000000424 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:59:46.648 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:59:46.648 -07 000000476 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:46.648 -07 000000476 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:59:46.648 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 18:59:46.648 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:46.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:47.598 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:47.598 -07 000000382 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:59:47.608 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:47.608 -07 000000476 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:47.628 -07 000000476 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:59:47.628 -07 000000476 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:59:47.628 -07 000000476 INF: Y Motor: Moved to 62.3960 after 1421 ms (table move)
17-03-17 18:59:47.628 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172126 mm (DAC = 37601)
17-03-17 18:59:47.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.628 -07 000000012 INF: FPGA: Recv ZSGSRD 36088
17-03-17 18:59:47.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:59:47.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.648 -07 000000512 INF: FPGA: Recv ZSGSRD 36086
17-03-17 18:59:47.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:59:47.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.658 -07 000000476 INF: FPGA: Recv ZSGSRD 36083
17-03-17 18:59:47.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.668 -07 000000415 INF: FPGA: Recv ZSGSRD 36084
17-03-17 18:59:47.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.678 -07 000000012 INF: FPGA: Recv ZSGSRD 36086
17-03-17 18:59:47.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.688 -07 000000541 INF: FPGA: Recv ZSGSRD 36084
17-03-17 18:59:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.698 -07 000000569 INF: FPGA: Recv ZSGSRD 36082
17-03-17 18:59:47.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.708 -07 000000623 INF: FPGA: Recv ZSGSRD 36085
17-03-17 18:59:47.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.718 -07 000000608 INF: FPGA: Recv ZSGSRD 36077
17-03-17 18:59:47.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.728 -07 000000512 INF: FPGA: Recv ZSGSRD 36093
17-03-17 18:59:47.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:47.738 -07 000000541 INF: FPGA: Recv ZPIEZORD 32163
17-03-17 18:59:47.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.748 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.7 V.
17-03-17 18:59:47.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36085 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36084 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36077 (-171.2 uncal um), Max = 36093 (-171.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:59:47.748 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36085, posNoise = 8, negNoise = 8
17-03-17 18:59:47.748 -07 000000610 INF: Z Motor: After move to -0.172126, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:47.748 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 118 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:59:47.748 -07 000000610 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 18:59:47.788 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 18:59:47.788 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:59:47.788 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.172141047146579. ----------
17-03-17 18:59:47.788 -07 000000610 INF: Cycle	20	Tile	4	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 18:59:47.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37424, sync = True, waitForSettling = True)
17-03-17 18:59:47.788 -07 000000610 INF: Z Motor: Moving to -0.171316 mm, started at -0.172141 mm, distance = 0.82 um
17-03-17 18:59:47.788 -07 000000610 INF: FPGA: Xmit ZDACW 37424\n [Z Motor]
17-03-17 18:59:47.798 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:59:47.798 -07 000000610 INF: FPGA: 'ZDACW 37424' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:59:47.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:47.798 -07 000000012 INF: FPGA: Recv ZDACR 37424
17-03-17 18:59:47.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:59:47.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:59:47.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.958 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.973092,
17-03-17 18:59:47.958 -07 000000476 INF: FPGA: Recv ZSGSRD 35960
17-03-17 18:59:47.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:47.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.988 -07 000000431 INF: FPGA: Recv ZSGSRD 35954
17-03-17 18:59:47.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:59:47.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:47.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35963
17-03-17 18:59:48.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:48.028 -07 000000502 INF: FPGA: Recv ZSGSRD 35961
17-03-17 18:59:48.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:59:48.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:48.038 -07 000000561 INF: FPGA: Recv ZSGSRD 35955
17-03-17 18:59:48.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:48.048 -07 000000415 INF: FPGA: Recv ZSGSRD 35960
17-03-17 18:59:48.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:48.058 -07 000000462 INF: FPGA: Recv ZSGSRD 35957
17-03-17 18:59:48.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:48.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35958
17-03-17 18:59:48.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:48.078 -07 000000012 INF: FPGA: Recv ZSGSRD 35961
17-03-17 18:59:48.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:48.088 -07 000000561 INF: FPGA: Recv ZSGSRD 35961
17-03-17 18:59:48.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:48.098 -07 000000415 INF: FPGA: Recv ZPIEZORD 31943
17-03-17 18:59:48.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:48.108 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -8.9 V.
17-03-17 18:59:48.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35959 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35960 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35954 (-170.4 uncal um), Max = 35963 (-170.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:59:48.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35959, posNoise = 4, negNoise = 5
17-03-17 18:59:48.108 -07 000000610 INF: Z Motor: After move to -0.171316, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:48.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 313 ms)
17-03-17 18:59:48.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:48.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:48.108 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:48.108 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:48.108 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:59:48.108 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:59:48.108 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:59:48.118 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:48.118 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:59:48.118 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:59:48.118 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:59:48.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:59:48.118 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:59:48.118 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:59:48.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:59:48.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:59:48.138 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:59:48.138 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:59:48.138 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:59:48.138 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:59:48.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37601 150\n [Camera]
17-03-17 18:59:48.338 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:59:48.738 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:59:48.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:59:48.738 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:48.738 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:59:48.738 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:48.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:59:48.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:59:48.738 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:48.748 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:48.748 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) start.
17-03-17 18:59:48.928 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37601 782
17-03-17 18:59:49.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:59:49.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:59:49.128 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:59:49.128 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:49.138 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:49.138 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:59:49.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:59:49.138 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:59:49.138 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:49.138 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:49.148 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:59:49.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1125
17-03-17 18:59:49.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1125
17-03-17 18:59:49.268 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:49.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 18:59:49.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 18:59:49.278 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:49.278 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:49.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113722528, 0x0, 418435064) start.
17-03-17 18:59:49.278 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:49.278 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:59:49.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 18:59:49.458 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:59:49.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37601 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-17 18:59:49.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:59:49.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.171331596416717. ------
17-03-17 18:59:49.468 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17796 mm
17-03-17 18:59:49.468 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:49.468 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:59:49.468 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:59:49.468 -07 000000486 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:59:49.468 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38876, sync = True, waitForSettling = False)
17-03-17 18:59:49.468 -07 000000502 INF: Z Motor: Moving to -0.177963 mm, started at -0.171332 mm, distance = -6.63 um
17-03-17 18:59:49.468 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:59:49.478 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:59:49.478 -07 000000502 INF: FPGA: Xmit ZDACW 38876\n [Z Motor]
17-03-17 18:59:49.478 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:59:49.488 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:49.488 -07 000000502 INF: FPGA: 'ZDACW 38876' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:59:49.488 -07 000000569 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:59:49.498 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:59:49.498 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:59:49.498 -07 000000486 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:49.498 -07 000000486 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:59:49.498 -07 000000486 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:59:49.508 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:49.508 -07 000000623 INF: FPGA: Recv ZDACR 38876
17-03-17 18:59:49.518 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:59:49.518 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:59:49.518 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:59:49.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113722528, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:59:49.648 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:59:49.648 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:49.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:49.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:59:49.658 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:59:49.658 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:49.658 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:49.658 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:59:49.658 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:59:49.698 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:59:49.698 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 18:59:49.888 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:59:49.888 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:59:49.928 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:49.928 -07 000000433 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:59:49.938 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:59:49.938 -07 000000486 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:49.938 -07 000000486 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:59:49.938 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 18:59:50.888 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:50.888 -07 000000551 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:59:50.898 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:50.898 -07 000000486 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:50.918 -07 000000486 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:59:50.918 -07 000000486 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:59:50.918 -07 000000486 INF: Y Motor: Moved to 63.2251 after 1444 ms (table move)
17-03-17 18:59:50.918 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177963 mm (DAC = 38876)
17-03-17 18:59:50.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.918 -07 000000541 INF: FPGA: Recv ZSGSRD 36991
17-03-17 18:59:50.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:59:50.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.928 -07 000000551 INF: FPGA: Recv ZSGSRD 36980
17-03-17 18:59:50.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:50.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.938 -07 000000012 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:59:50.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:50.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.948 -07 000000502 INF: FPGA: Recv ZSGSRD 36988
17-03-17 18:59:50.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:50.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.958 -07 000000608 INF: FPGA: Recv ZSGSRD 36996
17-03-17 18:59:50.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:50.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.968 -07 000000551 INF: FPGA: Recv ZSGSRD 36984
17-03-17 18:59:50.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:50.978 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.978 -07 000000415 INF: FPGA: Recv ZSGSRD 37003
17-03-17 18:59:50.988 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:50.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.988 -07 000000462 INF: FPGA: Recv ZSGSRD 36994
17-03-17 18:59:50.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:50.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:50.998 -07 000000012 INF: FPGA: Recv ZSGSRD 36984
17-03-17 18:59:51.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.008 -07 000000551 INF: FPGA: Recv ZSGSRD 36989
17-03-17 18:59:51.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.018 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:51.018 -07 000000438 INF: FPGA: Recv ZPIEZORD 33307
17-03-17 18:59:51.028 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.028 -07 000000382 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.2 V.
17-03-17 18:59:51.028 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36990 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36990 (-177.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36980 (-177.0 uncal um), Max = 37003 (-177.1 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:59:51.028 -07 000000382 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36990, posNoise = 13, negNoise = 10
17-03-17 18:59:51.028 -07 000000382 INF: Z Motor: After move to -0.177963, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:51.028 -07 000000382 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:59:51.028 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:59:51.078 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:59:51.078 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:59:51.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:51.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:51.078 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:51.078 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:51.078 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:59:51.078 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:51.078 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:59:51.078 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:59:51.088 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:59:51.088 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:59:51.098 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:59:51.098 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:59:51.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:59:51.148 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:59:51.348 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:59:51.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:59:51.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:59:51.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615008640, 0x0, 559484976) start.
17-03-17 18:59:51.378 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:59:51.388 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:59:51.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:59:51.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615008640, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:59:51.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:51.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:59:51.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:59:51.488 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:59:51.488 -07 000000512 INF: Autofocus start
17-03-17 18:59:51.488 -07 000000512 INF: MeasureProfile start
17-03-17 18:59:51.488 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:59:51.498 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:59:51.498 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:59:51.498 -07 000000512 INF: MeasureProfile done
17-03-17 18:59:51.498 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:59:51.498 -07 000000512 INF: Autofocus finished
17-03-17 18:59:51.648 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:51.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:51.698 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:59:51.698 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:59:51.698 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177954959134873. ----------
17-03-17 18:59:51.698 -07 000000610 INF: Cycle	20	Tile	5	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 18:59:51.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37409, sync = True, waitForSettling = True)
17-03-17 18:59:51.708 -07 000000610 INF: Z Motor: Moving to -0.171247 mm, started at -0.177955 mm, distance = 6.71 um
17-03-17 18:59:51.708 -07 000000610 INF: FPGA: Xmit ZDACW 37409\n [Z Motor]
17-03-17 18:59:51.708 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:59:51.718 -07 000000610 INF: FPGA: 'ZDACW 37409' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:51.718 -07 000000476 INF: FPGA: Recv ZDACR 37409
17-03-17 18:59:51.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:59:51.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.878 -07 000000462 INF: FPGA: Recv ZSGSRD 35945
17-03-17 18:59:51.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:51.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.888 -07 000000623 INF: FPGA: Recv ZSGSRD 35942
17-03-17 18:59:51.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.898 -07 000000433 INF: FPGA: Recv ZSGSRD 35953
17-03-17 18:59:51.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.908 -07 000000541 INF: FPGA: Recv ZSGSRD 35947
17-03-17 18:59:51.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.918 -07 000000476 INF: FPGA: Recv ZSGSRD 35942
17-03-17 18:59:51.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.928 -07 000000433 INF: FPGA: Recv ZSGSRD 35948
17-03-17 18:59:51.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.938 -07 000000608 INF: FPGA: Recv ZSGSRD 35943
17-03-17 18:59:51.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.948 -07 000000623 INF: FPGA: Recv ZSGSRD 35949
17-03-17 18:59:51.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35942
17-03-17 18:59:51.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:51.968 -07 000000382 INF: FPGA: Recv ZSGSRD 35942
17-03-17 18:59:51.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:51.978 -07 000000541 INF: FPGA: Recv ZPIEZORD 31926
17-03-17 18:59:51.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:51.988 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.9 V.
17-03-17 18:59:51.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35945 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35944 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35942 (-170.3 uncal um), Max = 35953 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:59:51.988 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35945, posNoise = 8, negNoise = 3
17-03-17 18:59:51.988 -07 000000610 INF: Z Motor: After move to -0.171247, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:51.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:59:51.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:51.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:51.988 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:51.988 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:51.988 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:59:51.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:51.988 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:59:51.988 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:59:51.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:59:51.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:59:51.988 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:59:51.988 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:59:51.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:59:51.988 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:59:51.988 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:59:51.988 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:59:51.998 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:59:51.998 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:59:51.998 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:59:51.998 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:59:52.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37585 150\n [Camera]
17-03-17 18:59:52.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:59:52.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:59:52.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:59:52.608 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:52.608 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:52.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1149144792, 0x0, 391868352) start.
17-03-17 18:59:52.608 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:59:52.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:59:52.608 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:52.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:52.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:59:52.798 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37585 782
17-03-17 18:59:52.948 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:59:52.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1149144792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:59:52.988 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:59:52.988 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:52.988 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:59:52.988 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:59:52.988 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:52.988 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:59:52.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:59:52.988 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:59:52.998 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:59:53.138 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:59:53.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:59:53.138 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:53.278 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:59:53.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:59:53.278 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:53.278 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:53.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) start.
17-03-17 18:59:53.278 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:53.278 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:59:53.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 18:59:53.328 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:59:53.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37585 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-17 18:59:53.328 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171665
17-03-17 18:59:53.328 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17166 mm
17-03-17 18:59:53.328 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:53.338 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:59:53.338 -07 000000486 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:59:53.338 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37500, sync = True, waitForSettling = False)
17-03-17 18:59:53.338 -07 000000502 INF: Z Motor: Moving to -0.171664 mm, started at -0.171242 mm, distance = -0.42 um
17-03-17 18:59:53.348 -07 000000502 INF: FPGA: Xmit ZDACW 37500\n [Z Motor]
17-03-17 18:59:53.348 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.996267,
17-03-17 18:59:53.348 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:59:53.358 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:53.358 -07 000000502 INF: FPGA: 'ZDACW 37500' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:59:53.358 -07 000000462 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:59:53.368 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:59:53.368 -07 000000486 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:53.368 -07 000000486 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:59:53.368 -07 000000486 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:59:53.378 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:53.378 -07 000000512 INF: FPGA: Recv ZDACR 37500
17-03-17 18:59:53.388 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:59:53.388 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:59:53.388 -07 000000502 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:59:53.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:59:53.658 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:59:53.658 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:53.658 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:59:53.658 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:59:53.658 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:53.668 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:59:53.668 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:59:53.668 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 18:59:53.668 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:59:53.758 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:59:53.758 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:59:53.798 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:53.798 -07 000000502 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:59:53.808 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:59:53.808 -07 000000486 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:53.808 -07 000000486 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:59:53.808 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:59:54.758 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:54.758 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:59:54.768 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.768 -07 000000486 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:54.778 -07 000000486 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:59:54.778 -07 000000486 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:59:54.778 -07 000000486 INF: Y Motor: Moved to 64.0576 after 1446 ms (table move)
17-03-17 18:59:54.788 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171664 mm (DAC = 37500)
17-03-17 18:59:54.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.788 -07 000000551 INF: FPGA: Recv ZSGSRD 36009
17-03-17 18:59:54.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:59:54.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.798 -07 000000561 INF: FPGA: Recv ZSGSRD 36005
17-03-17 18:59:54.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.808 -07 000000431 INF: FPGA: Recv ZSGSRD 36011
17-03-17 18:59:54.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.818 -07 000000502 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:59:54.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.828 -07 000000569 INF: FPGA: Recv ZSGSRD 36014
17-03-17 18:59:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.838 -07 000000433 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:59:54.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.848 -07 000000561 INF: FPGA: Recv ZSGSRD 36013
17-03-17 18:59:54.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.858 -07 000000438 INF: FPGA: Recv ZSGSRD 36008
17-03-17 18:59:54.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.868 -07 000000502 INF: FPGA: Recv ZSGSRD 36015
17-03-17 18:59:54.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:54.878 -07 000000486 INF: FPGA: Recv ZSGSRD 36006
17-03-17 18:59:54.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:54.888 -07 000000433 INF: FPGA: Recv ZPIEZORD 31979
17-03-17 18:59:54.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.898 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.9 V.
17-03-17 18:59:54.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36012 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36005 (-170.7 uncal um), Max = 36017 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:59:54.898 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36012, posNoise = 5, negNoise = 7
17-03-17 18:59:54.898 -07 000000610 INF: Z Motor: After move to -0.171664, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:54.898 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-17 18:59:54.898 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:59:54.938 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:59:54.938 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:59:54.938 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.171672079660231. ----------
17-03-17 18:59:54.938 -07 000000610 INF: Cycle	20	Tile	6	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 18:59:54.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37323, sync = True, waitForSettling = True)
17-03-17 18:59:54.938 -07 000000610 INF: Z Motor: Moving to -0.170854 mm, started at -0.171672 mm, distance = 0.82 um
17-03-17 18:59:54.948 -07 000000610 INF: FPGA: Xmit ZDACW 37323\n [Z Motor]
17-03-17 18:59:54.948 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:59:54.958 -07 000000610 INF: FPGA: 'ZDACW 37323' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:54.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:54.958 -07 000000382 INF: FPGA: Recv ZDACR 37323
17-03-17 18:59:54.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:54.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:59:55.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.118 -07 000000486 INF: FPGA: Recv ZSGSRD 35885
17-03-17 18:59:55.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:59:55.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.128 -07 000000502 INF: FPGA: Recv ZSGSRD 35888
17-03-17 18:59:55.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35884
17-03-17 18:59:55.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.148 -07 000000569 INF: FPGA: Recv ZSGSRD 35886
17-03-17 18:59:55.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.158 -07 000000462 INF: FPGA: Recv ZSGSRD 35884
17-03-17 18:59:55.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.168 -07 000000512 INF: FPGA: Recv ZSGSRD 35884
17-03-17 18:59:55.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.178 -07 000000415 INF: FPGA: Recv ZSGSRD 35888
17-03-17 18:59:55.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.188 -07 000000382 INF: FPGA: Recv ZSGSRD 35887
17-03-17 18:59:55.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.198 -07 000000486 INF: FPGA: Recv ZSGSRD 35887
17-03-17 18:59:55.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:55.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35888
17-03-17 18:59:55.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:55.218 -07 000000462 INF: FPGA: Recv ZPIEZORD 31842
17-03-17 18:59:55.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:55.228 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -8.9 V.
17-03-17 18:59:55.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35886 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35886 (-170.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35884 (-170.0 uncal um), Max = 35888 (-170.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:59:55.228 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35886, posNoise = 2, negNoise = 2
17-03-17 18:59:55.228 -07 000000610 INF: Z Motor: After move to -0.170854, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:55.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:59:55.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:55.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:55.228 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:55.228 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:59:55.228 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:55.228 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:59:55.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:59:55.228 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:55.228 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:59:55.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:59:55.228 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:59:55.228 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:59:55.238 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:59:55.238 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:59:55.238 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:59:55.238 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:59:55.248 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:59:55.248 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:59:55.248 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:59:55.248 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:59:55.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37500 150\n [Camera]
17-03-17 18:59:55.448 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:59:55.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:59:55.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:59:55.848 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:55.848 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:55.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113722528, 0x0, 391868352) start.
17-03-17 18:59:55.848 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:59:55.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:59:55.848 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:55.968 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:55.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:59:56.038 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37500 782
17-03-17 18:59:56.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:59:56.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113722528, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:59:56.228 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:59:56.228 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:56.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:56.238 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:59:56.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:59:56.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:59:56.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:56.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:59:56.348 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 18:59:56.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:59:56.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:59:56.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:56.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:59:56.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:59:56.388 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:56.388 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:56.388 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1149144792, 0x0, 418435064) start.
17-03-17 18:59:56.388 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:56.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1061425200, 0x0, 391868352) start.
17-03-17 18:59:56.568 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 18:59:56.578 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:59:56.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37500 150' command took 2 ms to send, 1310 ms to get response, and 1322 ms overall
17-03-17 18:59:56.578 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171429
17-03-17 18:59:56.578 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17143 mm
17-03-17 18:59:56.578 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:56.578 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:59:56.578 -07 000000476 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:59:56.578 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:56.578 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37449, sync = True, waitForSettling = False)
17-03-17 18:59:56.578 -07 000000382 INF: Z Motor: Moving to -0.171431 mm, started at -0.170863 mm, distance = -0.57 um
17-03-17 18:59:56.578 -07 000000502 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:59:56.588 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:59:56.588 -07 000000476 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:56.588 -07 000000476 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:59:56.588 -07 000000476 INF: Y Motor: Moving 1336 steps-10
17-03-17 18:59:56.588 -07 000000382 INF: FPGA: Xmit ZDACW 37449\n [Z Motor]
17-03-17 18:59:56.588 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:59:56.598 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:59:56.598 -07 000000382 INF: FPGA: 'ZDACW 37449' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:59:56.608 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:56.608 -07 000000541 INF: FPGA: Recv ZDACR 37449
17-03-17 18:59:56.618 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:59:56.618 -07 000000382 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:59:56.648 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:59:56.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 18:59:56.768 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1061425200, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:59:56.768 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:59:56.768 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:56.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1149144792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:59:56.768 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:59:56.768 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:56.778 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:59:56.778 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:59:56.778 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:59:56.778 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:59:56.968 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:59:56.968 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:59:56.998 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:57.008 -07 000000561 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:59:57.008 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:59:57.008 -07 000000476 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:57.008 -07 000000476 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:59:57.008 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.835 mm, average velocity = 2.163 mm/sec
17-03-17 18:59:57.958 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:57.958 -07 000000561 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:59:57.968 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:57.968 -07 000000476 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:57.988 -07 000000476 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:59:57.988 -07 000000476 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:59:57.988 -07 000000476 INF: Y Motor: Moved to 64.8799 after 1406 ms (table move)
17-03-17 18:59:57.988 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171431 mm (DAC = 37449)
17-03-17 18:59:57.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:57.988 -07 000000012 INF: FPGA: Recv ZSGSRD 35969
17-03-17 18:59:57.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:59:57.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:57.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35971
17-03-17 18:59:58.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.008 -07 000000431 INF: FPGA: Recv ZSGSRD 35974
17-03-17 18:59:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.018 -07 000000502 INF: FPGA: Recv ZSGSRD 35974
17-03-17 18:59:58.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.028 -07 000000551 INF: FPGA: Recv ZSGSRD 35972
17-03-17 18:59:58.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.038 -07 000000561 INF: FPGA: Recv ZSGSRD 35979
17-03-17 18:59:58.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.048 -07 000000569 INF: FPGA: Recv ZSGSRD 35980
17-03-17 18:59:58.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.058 -07 000000433 INF: FPGA: Recv ZSGSRD 35979
17-03-17 18:59:58.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.068 -07 000000512 INF: FPGA: Recv ZSGSRD 35975
17-03-17 18:59:58.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.078 -07 000000415 INF: FPGA: Recv ZSGSRD 35974
17-03-17 18:59:58.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:58.088 -07 000000623 INF: FPGA: Recv ZPIEZORD 31979
17-03-17 18:59:58.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.098 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.8 V.
17-03-17 18:59:58.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35975 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35974 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35969 (-170.5 uncal um), Max = 35980 (-170.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:59:58.098 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35975, posNoise = 5, negNoise = 6
17-03-17 18:59:58.098 -07 000000610 INF: Z Motor: After move to -0.171431, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:58.098 -07 000000610 INF: Z Motor: Settle wait time = 1408 ms, measure time = 108 ms (allowed 150 ms), total time = 1516 ms
17-03-17 18:59:58.098 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:59:58.148 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 18:59:58.148 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:59:58.148 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.171434383810985. ----------
17-03-17 18:59:58.148 -07 000000610 INF: Cycle	20	Tile	7	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 18:59:58.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37272, sync = True, waitForSettling = True)
17-03-17 18:59:58.148 -07 000000610 INF: Z Motor: Moving to -0.170620 mm, started at -0.171434 mm, distance = 0.81 um
17-03-17 18:59:58.148 -07 000000610 INF: FPGA: Xmit ZDACW 37272\n [Z Motor]
17-03-17 18:59:58.148 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:59:58.158 -07 000000610 INF: FPGA: 'ZDACW 37272' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:59:58.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:58.158 -07 000000415 INF: FPGA: Recv ZDACR 37272
17-03-17 18:59:58.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:59:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.318 -07 000000561 INF: FPGA: Recv ZSGSRD 35848
17-03-17 18:59:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.328 -07 000000569 INF: FPGA: Recv ZSGSRD 35846
17-03-17 18:59:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.338 -07 000000433 INF: FPGA: Recv ZSGSRD 35848
17-03-17 18:59:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.348 -07 000000486 INF: FPGA: Recv ZSGSRD 35847
17-03-17 18:59:58.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.358 -07 000000551 INF: FPGA: Recv ZSGSRD 35853
17-03-17 18:59:58.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.368 -07 000000561 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:59:58.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.378 -07 000000012 INF: FPGA: Recv ZSGSRD 35848
17-03-17 18:59:58.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.388 -07 000000502 INF: FPGA: Recv ZSGSRD 35848
17-03-17 18:59:58.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.398 -07 000000486 INF: FPGA: Recv ZSGSRD 35848
17-03-17 18:59:58.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:59:58.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35851
17-03-17 18:59:58.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:59:58.418 -07 000000541 INF: FPGA: Recv ZPIEZORD 31785
17-03-17 18:59:58.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:58.428 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.0 V.
17-03-17 18:59:58.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35850 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35848 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35846 (-169.7 uncal um), Max = 35858 (-169.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:59:58.428 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35850, posNoise = 8, negNoise = 4
17-03-17 18:59:58.428 -07 000000610 INF: Z Motor: After move to -0.170620, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:59:58.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:59:58.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:59:58.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:59:58.428 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:59:58.428 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:59:58.428 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:59:58.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:59:58.428 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:59:58.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:59:58.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:59:58.428 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:59:58.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:59:58.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:59:58.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:59:58.438 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:59:58.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:59:58.438 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:59:58.448 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:59:58.448 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:59:58.448 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:59:58.448 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:59:58.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37449 150\n [Camera]
17-03-17 18:59:58.648 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:59:58.748 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.003063,
17-03-17 18:59:59.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 18:59:59.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 18:59:59.048 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:59.048 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:59.048 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:59:59.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 18:59:59.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 18:59:59.048 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:59.048 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:59.048 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:59:59.238 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37449 782
17-03-17 18:59:59.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 18:59:59.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:59:59.428 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:59:59.428 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:59.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:59:59.428 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:59:59.428 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:59.428 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:59:59.438 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:59:59.438 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:59:59.438 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:59:59.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 18:59:59.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 18:59:59.588 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:59:59.588 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:59:59.588 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:59:59.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 18:59:59.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 18:59:59.588 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:59:59.588 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:59:59.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:59:59.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 18:59:59.778 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:59:59.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37449 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-17 18:59:59.778 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.171186
17-03-17 18:59:59.778 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17119 mm
17-03-17 18:59:59.778 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:59:59.778 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37395, sync = True, waitForSettling = False)
17-03-17 18:59:59.778 -07 000000431 INF: Z Motor: Moving to -0.171183 mm, started at -0.170631 mm, distance = -0.55 um
17-03-17 18:59:59.778 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:59:59.778 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 18:59:59.788 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:59:59.788 -07 000000486 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:59:59.798 -07 000000431 INF: FPGA: Xmit ZDACW 37395\n [Z Motor]
17-03-17 18:59:59.798 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:59:59.798 -07 000000012 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:59:59.798 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:59:59.798 -07 000000012 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:59:59.798 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:59:59.808 -07 000000431 INF: FPGA: 'ZDACW 37395' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:59:59.808 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:59:59.808 -07 000000415 INF: FPGA: Recv ZDACR 37395
17-03-17 18:59:59.818 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:59:59.818 -07 000000431 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:59:59.818 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:59:59.968 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:59:59.968 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:59:59.968 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:59.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:59:59.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:59:59.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:59:59.968 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:59.968 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:59:59.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:59:59.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:00:00.188 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:00:00.188 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:00:00.228 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:00.228 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:00:00.238 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:00.238 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:00.238 -07 000000012 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:00:00.238 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:00:01.188 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:01.188 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:00:01.198 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:01.198 -07 000000012 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:01.218 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:01.218 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:01.218 -07 000000012 INF: Y Motor: Moved to 65.7148 after 1432 ms (table move)
17-03-17 19:00:01.218 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171183 mm (DAC = 37395)
17-03-17 19:00:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.228 -07 000000608 INF: FPGA: Recv ZSGSRD 35938
17-03-17 19:00:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 19:00:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.228 -07 000000438 INF: FPGA: Recv ZSGSRD 35931
17-03-17 19:00:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35936
17-03-17 19:00:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:00:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 14 ms overall
17-03-17 19:00:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:00:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35941
17-03-17 19:00:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.278 -07 000000438 INF: FPGA: Recv ZSGSRD 35942
17-03-17 19:00:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.288 -07 000000502 INF: FPGA: Recv ZSGSRD 35935
17-03-17 19:00:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.298 -07 000000012 INF: FPGA: Recv ZSGSRD 35933
17-03-17 19:00:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.308 -07 000000415 INF: FPGA: Recv ZSGSRD 35940
17-03-17 19:00:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:01.318 -07 000000623 INF: FPGA: Recv ZPIEZORD 31928
17-03-17 19:00:01.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.328 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.9 V.
17-03-17 19:00:01.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35938 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35939 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35931 (-170.3 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:00:01.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35938, posNoise = 4, negNoise = 7
17-03-17 19:00:01.328 -07 000000610 INF: Z Motor: After move to -0.171183, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:01.328 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 106 ms (allowed 150 ms), total time = 1542 ms
17-03-17 19:00:01.328 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:01.378 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 19:00:01.378 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:01.378 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.17119668796174. ----------
17-03-17 19:00:01.378 -07 000000610 INF: Cycle	20	Tile	8	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:01.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37219, sync = True, waitForSettling = True)
17-03-17 19:00:01.378 -07 000000610 INF: Z Motor: Moving to -0.170378 mm, started at -0.171197 mm, distance = 0.82 um
17-03-17 19:00:01.378 -07 000000610 INF: FPGA: Xmit ZDACW 37219\n [Z Motor]
17-03-17 19:00:01.378 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:00:01.388 -07 000000610 INF: FPGA: 'ZDACW 37219' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:01.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:01.388 -07 000000623 INF: FPGA: Recv ZDACR 37219
17-03-17 19:00:01.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.548 -07 000000382 INF: FPGA: Recv ZSGSRD 35810
17-03-17 19:00:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.558 -07 000000512 INF: FPGA: Recv ZSGSRD 35821
17-03-17 19:00:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.568 -07 000000462 INF: FPGA: Recv ZSGSRD 35810
17-03-17 19:00:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.578 -07 000000569 INF: FPGA: Recv ZSGSRD 35809
17-03-17 19:00:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.588 -07 000000438 INF: FPGA: Recv ZSGSRD 35815
17-03-17 19:00:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.598 -07 000000431 INF: FPGA: Recv ZSGSRD 35813
17-03-17 19:00:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.608 -07 000000561 INF: FPGA: Recv ZSGSRD 35812
17-03-17 19:00:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.618 -07 000000433 INF: FPGA: Recv ZSGSRD 35805
17-03-17 19:00:01.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35811
17-03-17 19:00:01.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:01.638 -07 000000551 INF: FPGA: Recv ZSGSRD 35820
17-03-17 19:00:01.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:01.648 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:01.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:01.648 -07 000000382 INF: FPGA: Recv ZPIEZORD 31740
17-03-17 19:00:01.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:01.658 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -9.0 V.
17-03-17 19:00:01.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35813 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35812 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35805 (-169.5 uncal um), Max = 35821 (-169.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:00:01.658 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35813, posNoise = 8, negNoise = 8
17-03-17 19:00:01.658 -07 000000610 INF: Z Motor: After move to -0.170378, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:01.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:00:01.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:01.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:01.658 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:01.658 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:01.658 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:01.658 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:01.658 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:01.658 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:01.658 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:01.658 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:01.658 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:01.658 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:01.668 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:00:01.668 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:01.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:01.668 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:01.678 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:00:01.678 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:01.678 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:00:01.678 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 19:00:01.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37395 150\n [Camera]
17-03-17 19:00:01.888 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:02.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:02.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:02.278 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:02.288 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:02.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:00:02.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:02.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:02.288 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:02.288 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:02.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:00:02.478 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37395 782
17-03-17 19:00:02.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-17 19:00:02.678 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 19:00:02.688 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:00:02.688 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:02.688 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:00:02.688 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:00:02.688 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:02.688 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:02.688 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 19:00:02.688 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:02.698 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 19:00:02.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:02.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:02.818 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:02.818 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:02.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:00:02.818 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:02.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:02.818 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:02.818 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:02.818 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:00:03.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:00:03.008 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:03.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37395 150' command took 2 ms to send, 1314 ms to get response, and 1322 ms overall
17-03-17 19:00:03.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:00:03.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.17039366144402. ------
17-03-17 19:00:03.018 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:03.018 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17665 mm
17-03-17 19:00:03.018 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:03.018 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:03.018 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38590, sync = True, waitForSettling = False)
17-03-17 19:00:03.018 -07 000000433 INF: Z Motor: Moving to -0.176654 mm, started at -0.170394 mm, distance = -6.26 um
17-03-17 19:00:03.018 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:00:03.018 -07 000000415 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:00:03.028 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:03.028 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:03.028 -07 000000561 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:00:03.038 -07 000000433 INF: FPGA: Xmit ZDACW 38590\n [Z Motor]
17-03-17 19:00:03.038 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:00:03.038 -07 000000415 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:03.038 -07 000000415 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:03.038 -07 000000415 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:00:03.038 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:00:03.048 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:00:03.048 -07 000000433 INF: FPGA: 'ZDACW 38590' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:00:03.058 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:03.068 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:03.068 -07 000000012 INF: FPGA: Recv ZDACR 38590
17-03-17 19:00:03.078 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:03.078 -07 000000433 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 19:00:03.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:00:03.188 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:00:03.188 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:03.198 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:03.198 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:00:03.198 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:00:03.198 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:03.198 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:03.198 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:00:03.198 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:00:03.248 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:00:03.248 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:00:03.428 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:00:03.428 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:00:03.468 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:03.478 -07 000000462 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:00:03.478 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:03.478 -07 000000415 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:03.478 -07 000000415 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:00:03.478 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 19:00:04.108 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.994908,
17-03-17 19:00:04.428 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:04.428 -07 000000541 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:00:04.438 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:04.438 -07 000000415 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:04.458 -07 000000415 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:04.458 -07 000000415 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:00:04.458 -07 000000415 INF: Y Motor: Moved to 66.5400 after 1436 ms (table move)
17-03-17 19:00:04.458 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176654 mm (DAC = 38590)
17-03-17 19:00:04.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.468 -07 000000561 INF: FPGA: Recv ZSGSRD 36792
17-03-17 19:00:04.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:00:04.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.468 -07 000000569 INF: FPGA: Recv ZSGSRD 36786
17-03-17 19:00:04.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.478 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.478 -07 000000502 INF: FPGA: Recv ZSGSRD 36787
17-03-17 19:00:04.488 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.488 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.488 -07 000000433 INF: FPGA: Recv ZSGSRD 36792
17-03-17 19:00:04.498 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.498 -07 000000561 INF: FPGA: Recv ZSGSRD 36787
17-03-17 19:00:04.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.508 -07 000000623 INF: FPGA: Recv ZSGSRD 36794
17-03-17 19:00:04.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.518 -07 000000502 INF: FPGA: Recv ZSGSRD 36797
17-03-17 19:00:04.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.528 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.528 -07 000000541 INF: FPGA: Recv ZSGSRD 36785
17-03-17 19:00:04.538 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.538 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.538 -07 000000462 INF: FPGA: Recv ZSGSRD 36776
17-03-17 19:00:04.548 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.548 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:04.548 -07 000000623 INF: FPGA: Recv ZSGSRD 36789
17-03-17 19:00:04.558 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.558 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:04.558 -07 000000608 INF: FPGA: Recv ZPIEZORD 33065
17-03-17 19:00:04.568 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:04.568 -07 000000476 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.2 V.
17-03-17 19:00:04.568 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36788 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36788 (-175.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36776 (-175.7 uncal um), Max = 36797 (-175.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 19:00:04.568 -07 000000476 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36788, posNoise = 9, negNoise = 12
17-03-17 19:00:04.568 -07 000000476 INF: Z Motor: After move to -0.176654, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:04.568 -07 000000476 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:00:04.568 -07 000000476 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:04.618 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 19:00:04.618 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:04.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:04.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:04.618 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:04.618 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:04.618 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:00:04.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:04.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:04.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:00:04.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:04.628 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:00:04.638 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:00:04.638 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:00:04.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:00:04.688 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:00:04.888 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:00:04.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:00:04.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:00:04.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:00:04.928 -07 000000382 INF: FPGA: Recv @CAMSNAP 281
17-03-17 19:00:04.928 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 19:00:04.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 19:00:05.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:00:05.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:05.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:00:05.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 19:00:05.028 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:05.028 -07 000000415 INF: Autofocus start
17-03-17 19:00:05.028 -07 000000415 INF: MeasureProfile start
17-03-17 19:00:05.028 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:05.038 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:05.038 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:00:05.038 -07 000000415 INF: MeasureProfile done
17-03-17 19:00:05.038 -07 000000415 INF: X=0  Z correction [um]=-0.0713522
17-03-17 19:00:05.038 -07 000000415 INF: Autofocus finished
17-03-17 19:00:05.238 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:00:05.238 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:00:05.238 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.176657268282237. ----------
17-03-17 19:00:05.238 -07 000000610 INF: Cycle	20	Tile	9	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:05.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37087, sync = True, waitForSettling = True)
17-03-17 19:00:05.248 -07 000000610 INF: Z Motor: Moving to -0.169773 mm, started at -0.176657 mm, distance = 6.88 um
17-03-17 19:00:05.248 -07 000000610 INF: FPGA: Xmit ZDACW 37087\n [Z Motor]
17-03-17 19:00:05.248 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:00:05.258 -07 000000610 INF: FPGA: 'ZDACW 37087' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:05.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:05.258 -07 000000486 INF: FPGA: Recv ZDACR 37087
17-03-17 19:00:05.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.418 -07 000000623 INF: FPGA: Recv ZSGSRD 35717
17-03-17 19:00:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.428 -07 000000382 INF: FPGA: Recv ZSGSRD 35713
17-03-17 19:00:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.438 -07 000000561 INF: FPGA: Recv ZSGSRD 35721
17-03-17 19:00:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35710
17-03-17 19:00:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.478 -07 000000415 INF: FPGA: Recv ZSGSRD 35720
17-03-17 19:00:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:05.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.488 -07 000000424 INF: FPGA: Recv ZSGSRD 35719
17-03-17 19:00:05.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.508 -07 000000415 INF: FPGA: Recv ZSGSRD 35715
17-03-17 19:00:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35725
17-03-17 19:00:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.548 -07 000000012 INF: FPGA: Recv ZSGSRD 35721
17-03-17 19:00:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:05.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:05.558 -07 000000424 INF: FPGA: Recv ZSGSRD 35716
17-03-17 19:00:05.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:05.568 -07 000000561 INF: FPGA: Recv ZPIEZORD 31623
17-03-17 19:00:05.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:05.578 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.0 V.
17-03-17 19:00:05.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35718 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35718 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35710 (-168.9 uncal um), Max = 35725 (-169.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:00:05.578 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35718, posNoise = 7, negNoise = 8
17-03-17 19:00:05.578 -07 000000610 INF: Z Motor: After move to -0.169773, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:05.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 19:00:05.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:05.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:05.578 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:05.578 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:05.578 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:05.578 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:05.578 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:05.578 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:05.578 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:05.578 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:05.578 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:05.578 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:05.588 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:00:05.588 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:05.588 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:05.588 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:05.598 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:00:05.598 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:00:05.598 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:00:05.598 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:05.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37263 150\n [Camera]
17-03-17 19:00:05.798 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:06.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:06.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:06.198 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:06.198 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:06.198 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:00:06.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:06.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:06.208 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:06.208 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:06.208 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:00:06.388 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37263 782
17-03-17 19:00:06.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:06.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:00:06.578 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:00:06.578 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:06.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:00:06.578 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:00:06.578 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:06.588 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:06.588 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:00:06.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:06.598 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:00:06.648 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:06.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:06.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:06.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:06.738 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:06.738 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:06.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:00:06.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:06.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:06.738 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:06.738 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:06.738 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:00:06.928 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-17 19:00:06.928 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:06.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37263 150' command took 2 ms to send, 1314 ms to get response, and 1324 ms overall
17-03-17 19:00:06.928 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170575
17-03-17 19:00:06.928 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17058 mm
17-03-17 19:00:06.928 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:06.928 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:00:06.928 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:00:06.928 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37262, sync = True, waitForSettling = False)
17-03-17 19:00:06.928 -07 000000431 INF: Z Motor: Moving to -0.170575 mm, started at -0.169783 mm, distance = -0.79 um
17-03-17 19:00:06.928 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:06.938 -07 000000431 INF: FPGA: Xmit ZDACW 37262\n [Z Motor]
17-03-17 19:00:06.938 -07 000000623 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:00:06.938 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:00:06.938 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 19:00:06.938 -07 000000502 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:06.938 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:06.938 -07 000000502 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:00:06.948 -07 000000431 INF: FPGA: 'ZDACW 37262' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:06.948 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:06.958 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:06.958 -07 000000623 INF: FPGA: Recv ZDACR 37262
17-03-17 19:00:06.968 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:06.968 -07 000000431 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:00:07.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:00:07.118 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:00:07.118 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:07.118 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:07.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 19:00:07.118 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:00:07.128 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:07.128 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:00:07.128 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:00:07.128 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:00:07.328 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:00:07.328 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 387 ms overall
17-03-17 19:00:07.358 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:07.368 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:00:07.368 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:07.368 -07 000000502 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:07.368 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:00:07.368 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.177 mm/sec
17-03-17 19:00:08.318 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:08.318 -07 000000512 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:00:08.328 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:08.328 -07 000000502 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:08.348 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:08.348 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:00:08.348 -07 000000502 INF: Y Motor: Moved to 67.3730 after 1411 ms (table move)
17-03-17 19:00:08.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170575 mm (DAC = 37262)
17-03-17 19:00:08.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.348 -07 000000462 INF: FPGA: Recv ZSGSRD 35849
17-03-17 19:00:08.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:08.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.358 -07 000000561 INF: FPGA: Recv ZSGSRD 35840
17-03-17 19:00:08.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.368 -07 000000476 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:00:08.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.378 -07 000000608 INF: FPGA: Recv ZSGSRD 35839
17-03-17 19:00:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.388 -07 000000502 INF: FPGA: Recv ZSGSRD 35847
17-03-17 19:00:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.398 -07 000000486 INF: FPGA: Recv ZSGSRD 35843
17-03-17 19:00:08.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.408 -07 000000431 INF: FPGA: Recv ZSGSRD 35845
17-03-17 19:00:08.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.418 -07 000000551 INF: FPGA: Recv ZSGSRD 35842
17-03-17 19:00:08.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.428 -07 000000415 INF: FPGA: Recv ZSGSRD 35840
17-03-17 19:00:08.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.438 -07 000000433 INF: FPGA: Recv ZSGSRD 35841
17-03-17 19:00:08.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:08.448 -07 000000424 INF: FPGA: Recv ZPIEZORD 31835
17-03-17 19:00:08.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.458 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -8.9 V.
17-03-17 19:00:08.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35843 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35842 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35839 (-169.7 uncal um), Max = 35849 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:00:08.458 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35843, posNoise = 6, negNoise = 4
17-03-17 19:00:08.458 -07 000000610 INF: Z Motor: After move to -0.170575, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:08.458 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 108 ms (allowed 150 ms), total time = 1521 ms
17-03-17 19:00:08.458 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:08.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:00:08.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:08.508 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.170586387808273. ----------
17-03-17 19:00:08.508 -07 000000610 INF: Cycle	20	Tile	10	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:08.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37085, sync = True, waitForSettling = True)
17-03-17 19:00:08.508 -07 000000610 INF: Z Motor: Moving to -0.169764 mm, started at -0.170586 mm, distance = 0.82 um
17-03-17 19:00:08.508 -07 000000610 INF: FPGA: Xmit ZDACW 37085\n [Z Motor]
17-03-17 19:00:08.508 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:00:08.518 -07 000000610 INF: FPGA: 'ZDACW 37085' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:08.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:08.518 -07 000000382 INF: FPGA: Recv ZDACR 37085
17-03-17 19:00:08.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.678 -07 000000431 INF: FPGA: Recv ZSGSRD 35717
17-03-17 19:00:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.688 -07 000000541 INF: FPGA: Recv ZSGSRD 35714
17-03-17 19:00:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.698 -07 000000415 INF: FPGA: Recv ZSGSRD 35718
17-03-17 19:00:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.708 -07 000000433 INF: FPGA: Recv ZSGSRD 35722
17-03-17 19:00:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.718 -07 000000512 INF: FPGA: Recv ZSGSRD 35722
17-03-17 19:00:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.728 -07 000000431 INF: FPGA: Recv ZSGSRD 35720
17-03-17 19:00:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.738 -07 000000541 INF: FPGA: Recv ZSGSRD 35711
17-03-17 19:00:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.748 -07 000000476 INF: FPGA: Recv ZSGSRD 35715
17-03-17 19:00:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.758 -07 000000433 INF: FPGA: Recv ZSGSRD 35721
17-03-17 19:00:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:08.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35713
17-03-17 19:00:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:08.778 -07 000000623 INF: FPGA: Recv ZPIEZORD 31655
17-03-17 19:00:08.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:08.788 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.0 V.
17-03-17 19:00:08.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35717 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35718 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35711 (-168.9 uncal um), Max = 35722 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:00:08.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35717, posNoise = 5, negNoise = 6
17-03-17 19:00:08.788 -07 000000610 INF: Z Motor: After move to -0.169764, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:08.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:00:08.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:08.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:08.788 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:08.788 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:08.788 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:08.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:08.788 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:08.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:08.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:00:08.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:08.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:08.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:08.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:08.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:08.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:00:08.788 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:08.798 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:00:08.798 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:00:08.798 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:00:08.798 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:00:08.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37262 150\n [Camera]
17-03-17 19:00:09.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:09.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:09.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:09.408 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:09.408 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:09.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:00:09.408 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:09.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:09.408 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:09.408 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:09.408 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:00:09.468 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.993549,
17-03-17 19:00:09.598 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37262 782
17-03-17 19:00:09.748 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:09.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:00:09.778 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:00:09.778 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:09.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:00:09.778 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:00:09.778 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:09.788 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:09.788 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:00:09.788 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:09.798 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:00:09.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:09.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:09.938 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:09.938 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:09.938 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 19:00:09.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:09.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:09.938 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:09.938 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:09.938 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:00:10.128 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:10.128 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:10.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37262 150' command took 2 ms to send, 1315 ms to get response, and 1323 ms overall
17-03-17 19:00:10.128 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169572
17-03-17 19:00:10.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16957 mm
17-03-17 19:00:10.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:10.138 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:00:10.138 -07 000000415 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:00:10.138 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:10.138 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37043, sync = True, waitForSettling = False)
17-03-17 19:00:10.138 -07 000000502 INF: Z Motor: Moving to -0.169572 mm, started at -0.169777 mm, distance = 0.20 um
17-03-17 19:00:10.138 -07 000000512 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:00:10.148 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:10.148 -07 000000415 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:10.148 -07 000000415 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:10.148 -07 000000415 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:00:10.148 -07 000000502 INF: FPGA: Xmit ZDACW 37043\n [Z Motor]
17-03-17 19:00:10.148 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:00:10.158 -07 000000502 INF: FPGA: 'ZDACW 37043' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:00:10.158 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:10.158 -07 000000433 INF: FPGA: Recv ZDACR 37043
17-03-17 19:00:10.168 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:10.168 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:10.168 -07 000000502 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:00:10.328 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:00:10.328 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:00:10.328 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:10.328 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:10.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 19:00:10.338 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:00:10.338 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:10.338 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:10.338 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 19:00:10.338 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:00:10.538 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 19:00:10.538 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:00:10.578 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:10.578 -07 000000424 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:00:10.588 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:10.588 -07 000000415 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:10.588 -07 000000415 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:00:10.588 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.109 mm/sec
17-03-17 19:00:11.538 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:11.538 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:00:11.548 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:11.548 -07 000000415 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:11.558 -07 000000415 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:11.558 -07 000000415 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:11.558 -07 000000415 INF: Y Motor: Moved to 68.2056 after 1427 ms (table move)
17-03-17 19:00:11.568 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169572 mm (DAC = 37043)
17-03-17 19:00:11.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35691
17-03-17 19:00:11.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:11.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.578 -07 000000541 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:00:11.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.588 -07 000000424 INF: FPGA: Recv ZSGSRD 35690
17-03-17 19:00:11.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.598 -07 000000431 INF: FPGA: Recv ZSGSRD 35686
17-03-17 19:00:11.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.608 -07 000000476 INF: FPGA: Recv ZSGSRD 35693
17-03-17 19:00:11.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.618 -07 000000502 INF: FPGA: Recv ZSGSRD 35691
17-03-17 19:00:11.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35689
17-03-17 19:00:11.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.638 -07 000000433 INF: FPGA: Recv ZSGSRD 35677
17-03-17 19:00:11.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.648 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:11.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:11.648 -07 000000541 INF: FPGA: Recv ZSGSRD 35678
17-03-17 19:00:11.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35682
17-03-17 19:00:11.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:11.668 -07 000000424 INF: FPGA: Recv ZPIEZORD 31598
17-03-17 19:00:11.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.678 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.0 V.
17-03-17 19:00:11.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35686 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35688 (-168.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35677 (-168.6 uncal um), Max = 35693 (-168.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:00:11.678 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35686, posNoise = 7, negNoise = 9
17-03-17 19:00:11.678 -07 000000610 INF: Z Motor: After move to -0.169572, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:11.678 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 108 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:00:11.678 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:11.728 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:00:11.728 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:11.728 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.169577786502016. ----------
17-03-17 19:00:11.728 -07 000000610 INF: Cycle	20	Tile	11	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:11.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36866, sync = True, waitForSettling = True)
17-03-17 19:00:11.728 -07 000000610 INF: Z Motor: Moving to -0.168762 mm, started at -0.169578 mm, distance = 0.82 um
17-03-17 19:00:11.728 -07 000000610 INF: FPGA: Xmit ZDACW 36866\n [Z Motor]
17-03-17 19:00:11.728 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:00:11.738 -07 000000610 INF: FPGA: 'ZDACW 36866' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:11.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:11.738 -07 000000415 INF: FPGA: Recv ZDACR 36866
17-03-17 19:00:11.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:11.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:11.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.898 -07 000000012 INF: FPGA: Recv ZSGSRD 35555
17-03-17 19:00:11.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.908 -07 000000512 INF: FPGA: Recv ZSGSRD 35567
17-03-17 19:00:11.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.918 -07 000000433 INF: FPGA: Recv ZSGSRD 35551
17-03-17 19:00:11.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.928 -07 000000608 INF: FPGA: Recv ZSGSRD 35566
17-03-17 19:00:11.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.938 -07 000000623 INF: FPGA: Recv ZSGSRD 35559
17-03-17 19:00:11.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.948 -07 000000012 INF: FPGA: Recv ZSGSRD 35559
17-03-17 19:00:11.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35565
17-03-17 19:00:11.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.968 -07 000000433 INF: FPGA: Recv ZSGSRD 35556
17-03-17 19:00:11.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35559
17-03-17 19:00:11.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:11.988 -07 000000476 INF: FPGA: Recv ZSGSRD 35565
17-03-17 19:00:11.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:11.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:11.998 -07 000000012 INF: FPGA: Recv ZPIEZORD 31455
17-03-17 19:00:12.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:12.008 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.625 V. Piezo Error = -9.1 V.
17-03-17 19:00:12.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35560 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35559 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35551 (-167.8 uncal um), Max = 35567 (-167.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:00:12.008 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35560, posNoise = 7, negNoise = 9
17-03-17 19:00:12.008 -07 000000610 INF: Z Motor: After move to -0.168762, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:12.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:00:12.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:12.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:12.008 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:12.008 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:12.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:12.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:12.008 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:12.008 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:12.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:12.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:12.008 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:00:12.008 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:12.018 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:12.018 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:12.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 19:00:12.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:12.028 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:00:12.028 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:12.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:00:12.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:00:12.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37043 150\n [Camera]
17-03-17 19:00:12.228 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:12.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:12.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:12.628 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:12.628 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:12.628 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:00:12.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:12.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:12.638 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:12.638 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:12.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:00:12.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37043 782
17-03-17 19:00:12.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:13.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:00:13.008 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:00:13.008 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:13.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:00:13.008 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:00:13.008 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:13.008 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:13.008 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:13.008 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:00:13.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:00:13.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:13.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:13.168 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:13.168 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:13.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:00:13.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:13.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:13.168 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:13.168 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:13.168 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 19:00:13.358 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:13.358 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:13.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37043 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-17 19:00:13.358 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169433
17-03-17 19:00:13.358 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16943 mm
17-03-17 19:00:13.358 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:13.358 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:00:13.358 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 19:00:13.358 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37013, sync = True, waitForSettling = False)
17-03-17 19:00:13.358 -07 000000415 INF: Z Motor: Moving to -0.169435 mm, started at -0.168768 mm, distance = -0.67 um
17-03-17 19:00:13.358 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:13.368 -07 000000415 INF: FPGA: Xmit ZDACW 37013\n [Z Motor]
17-03-17 19:00:13.368 -07 000000012 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:00:13.368 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:13.368 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:13.368 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:13.368 -07 000000561 INF: Y Motor: Moving 1339 steps-14
17-03-17 19:00:13.368 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:00:13.378 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:13.378 -07 000000415 INF: FPGA: 'ZDACW 37013' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:00:13.388 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:13.388 -07 000000438 INF: FPGA: Recv ZDACR 37013
17-03-17 19:00:13.398 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:13.398 -07 000000415 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:00:13.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:00:13.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:00:13.548 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:13.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:00:13.548 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:00:13.548 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:13.548 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:13.548 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:00:13.548 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:13.558 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:00:13.748 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:00:13.748 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:00:13.788 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:13.788 -07 000000541 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:00:13.798 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:13.798 -07 000000561 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:13.798 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:00:13.798 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 19:00:14.748 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:14.748 -07 000000623 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:00:14.758 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:14.758 -07 000000561 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:14.778 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:14.778 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:14.778 -07 000000561 INF: Y Motor: Moved to 69.0278 after 1415 ms (table move)
17-03-17 19:00:14.778 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169435 mm (DAC = 37013)
17-03-17 19:00:14.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.778 -07 000000502 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:00:14.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:14.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.788 -07 000000433 INF: FPGA: Recv ZSGSRD 35662
17-03-17 19:00:14.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:14.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.798 -07 000000431 INF: FPGA: Recv ZSGSRD 35664
17-03-17 19:00:14.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:14.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.808 -07 000000476 INF: FPGA: Recv ZSGSRD 35665
17-03-17 19:00:14.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:14.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.828 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.98264,
17-03-17 19:00:14.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35664
17-03-17 19:00:14.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:14.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.858 -07 000000433 INF: FPGA: Recv ZSGSRD 35658
17-03-17 19:00:14.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:14.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.868 -07 000000438 INF: FPGA: Recv ZSGSRD 35661
17-03-17 19:00:14.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:14.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.898 -07 000000512 INF: FPGA: Recv ZSGSRD 35663
17-03-17 19:00:14.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:14.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.908 -07 000000433 INF: FPGA: Recv ZSGSRD 35661
17-03-17 19:00:14.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:14.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:14.918 -07 000000012 INF: FPGA: Recv ZSGSRD 35662
17-03-17 19:00:14.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:14.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:14.928 -07 000000462 INF: FPGA: Recv ZPIEZORD 31603
17-03-17 19:00:14.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.0 V.
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35662 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35662 (-168.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35658 (-168.5 uncal um), Max = 35665 (-168.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35662, posNoise = 3, negNoise = 4
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: After move to -0.169435, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 156 ms (allowed 150 ms), total time = 1573 ms
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms
17-03-17 19:00:14.938 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 19:00:14.938 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:14.938 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.169423605410614. ----------
17-03-17 19:00:14.938 -07 000000610 INF: Cycle	20	Tile	12	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36836, sync = True, waitForSettling = True)
17-03-17 19:00:14.938 -07 000000610 INF: Z Motor: Moving to -0.168624 mm, started at -0.169424 mm, distance = 0.80 um
17-03-17 19:00:14.938 -07 000000610 INF: FPGA: Xmit ZDACW 36836\n [Z Motor]
17-03-17 19:00:14.948 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:00:14.948 -07 000000610 INF: FPGA: 'ZDACW 36836' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:00:14.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:14.948 -07 000000541 INF: FPGA: Recv ZDACR 36836
17-03-17 19:00:14.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:14.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.108 -07 000000486 INF: FPGA: Recv ZSGSRD 35540
17-03-17 19:00:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.118 -07 000000623 INF: FPGA: Recv ZSGSRD 35541
17-03-17 19:00:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.128 -07 000000608 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:00:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.138 -07 000000424 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:00:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.148 -07 000000012 INF: FPGA: Recv ZSGSRD 35542
17-03-17 19:00:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.158 -07 000000415 INF: FPGA: Recv ZSGSRD 35538
17-03-17 19:00:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.168 -07 000000569 INF: FPGA: Recv ZSGSRD 35538
17-03-17 19:00:15.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35537
17-03-17 19:00:15.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.188 -07 000000424 INF: FPGA: Recv ZSGSRD 35540
17-03-17 19:00:15.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:15.198 -07 000000382 INF: FPGA: Recv ZSGSRD 35544
17-03-17 19:00:15.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:15.208 -07 000000476 INF: FPGA: Recv ZPIEZORD 31446
17-03-17 19:00:15.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:15.218 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.0 V.
17-03-17 19:00:15.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35537 (-167.7 uncal um), Max = 35544 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:00:15.218 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 4, negNoise = 3
17-03-17 19:00:15.218 -07 000000610 INF: Z Motor: After move to -0.168624, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:15.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:00:15.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:15.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:15.218 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:15.218 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:15.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:15.218 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:15.218 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:15.218 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:15.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:00:15.218 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:15.218 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:15.218 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:15.228 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:00:15.228 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:15.228 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:00:15.228 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:15.238 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:00:15.238 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:00:15.238 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:00:15.238 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:15.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37013 150\n [Camera]
17-03-17 19:00:15.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:15.858 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:15.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:15.858 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:15.858 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:15.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 19:00:15.858 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:15.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:15.858 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:15.868 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:15.868 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 19:00:16.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37013 782
17-03-17 19:00:16.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:16.238 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:00:16.238 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:00:16.238 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:16.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:00:16.238 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:16.238 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:00:16.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:00:16.238 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:16.248 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:16.248 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:00:16.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:16.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:16.398 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:16.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:16.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:16.538 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:16.548 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:16.548 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:00:16.548 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:16.548 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:00:16.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:00:16.588 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:16.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37013 150' command took 20 ms to send, 1311 ms to get response, and 1340 ms overall
17-03-17 19:00:16.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:00:16.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168639851529319. ------
17-03-17 19:00:16.588 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:16.588 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17495 mm
17-03-17 19:00:16.588 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:16.588 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:00:16.588 -07 000000431 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:00:16.588 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:16.588 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38217, sync = True, waitForSettling = False)
17-03-17 19:00:16.598 -07 000000608 INF: Z Motor: Moving to -0.174946 mm, started at -0.168640 mm, distance = -6.31 um
17-03-17 19:00:16.598 -07 000000608 INF: FPGA: Xmit ZDACW 38217\n [Z Motor]
17-03-17 19:00:16.598 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:16.598 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:00:16.608 -07 000000608 INF: FPGA: 'ZDACW 38217' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:16.608 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:16.608 -07 000000569 INF: FPGA: Recv ZDACR 38217
17-03-17 19:00:16.618 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:16.618 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:16.618 -07 000000608 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 19:00:16.618 -07 000000623 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:00:16.628 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:00:16.628 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 19:00:16.628 -07 000000431 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:16.628 -07 000000431 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:16.628 -07 000000431 INF: Y Motor: Moving 1352 steps-30
17-03-17 19:00:16.638 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:16.648 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:16.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:16.828 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:00:16.828 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 234 ms overall
17-03-17 19:00:16.928 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:00:16.928 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:00:16.928 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:16.928 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:00:16.928 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:00:16.928 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:16.928 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:16.928 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-17 19:00:16.938 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:16.938 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 19:00:17.008 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:00:17.008 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:00:17.048 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:17.048 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:00:17.058 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:17.058 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:17.058 -07 000000431 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:00:17.058 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.183 mm/sec
17-03-17 19:00:18.008 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:18.008 -07 000000424 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:00:18.018 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:18.018 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:18.038 -07 000000431 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:18.038 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:18.038 -07 000000431 INF: Y Motor: Moved to 69.8638 after 1441 ms (table move)
17-03-17 19:00:18.038 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174946 mm (DAC = 38217)
17-03-17 19:00:18.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.038 -07 000000431 INF: FPGA: Recv ZSGSRD 36526
17-03-17 19:00:18.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:18.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.048 -07 000000608 INF: FPGA: Recv ZSGSRD 36518
17-03-17 19:00:18.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.058 -07 000000382 INF: FPGA: Recv ZSGSRD 36525
17-03-17 19:00:18.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.068 -07 000000623 INF: FPGA: Recv ZSGSRD 36524
17-03-17 19:00:18.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.078 -07 000000476 INF: FPGA: Recv ZSGSRD 36525
17-03-17 19:00:18.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.088 -07 000000608 INF: FPGA: Recv ZSGSRD 36532
17-03-17 19:00:18.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.098 -07 000000431 INF: FPGA: Recv ZSGSRD 36519
17-03-17 19:00:18.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.108 -07 000000623 INF: FPGA: Recv ZSGSRD 36517
17-03-17 19:00:18.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.118 -07 000000561 INF: FPGA: Recv ZSGSRD 36522
17-03-17 19:00:18.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.128 -07 000000541 INF: FPGA: Recv ZSGSRD 36524
17-03-17 19:00:18.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.138 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:18.138 -07 000000551 INF: FPGA: Recv ZPIEZORD 32747
17-03-17 19:00:18.148 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.148 -07 000000012 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.4 V.
17-03-17 19:00:18.148 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36523 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36524 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36517 (-174.0 uncal um), Max = 36532 (-174.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:00:18.148 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36523, posNoise = 9, negNoise = 6
17-03-17 19:00:18.148 -07 000000012 INF: Z Motor: After move to -0.174946, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:18.148 -07 000000012 INF: Z Motor: Settle wait time = 1443 ms, measure time = 107 ms (allowed 150 ms), total time = 1550 ms
17-03-17 19:00:18.148 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:18.198 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 19:00:18.198 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:18.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:18.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:18.198 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:18.198 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:18.198 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:00:18.198 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:18.198 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:18.198 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:00:18.208 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:18.208 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:00:18.218 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:00:18.218 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 19:00:18.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:00:18.268 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:00:18.468 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:00:18.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:00:18.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:00:18.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 19:00:18.508 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:00:18.508 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:00:18.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:00:18.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 19:00:18.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:18.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:00:18.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 19:00:18.608 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:18.608 -07 000000462 INF: Autofocus start
17-03-17 19:00:18.608 -07 000000462 INF: MeasureProfile start
17-03-17 19:00:18.608 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:18.618 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:18.618 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:00:18.618 -07 000000462 INF: MeasureProfile done
17-03-17 19:00:18.618 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 19:00:18.618 -07 000000462 INF: Autofocus finished
17-03-17 19:00:18.818 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:00:18.818 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:00:18.828 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.17495485206467. ----------
17-03-17 19:00:18.828 -07 000000610 INF: Cycle	20	Tile	13	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:18.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36732, sync = True, waitForSettling = True)
17-03-17 19:00:18.828 -07 000000610 INF: Z Motor: Moving to -0.168148 mm, started at -0.174955 mm, distance = 6.81 um
17-03-17 19:00:18.828 -07 000000610 INF: FPGA: Xmit ZDACW 36732\n [Z Motor]
17-03-17 19:00:18.828 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:00:18.838 -07 000000610 INF: FPGA: 'ZDACW 36732' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:18.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:18.838 -07 000000424 INF: FPGA: Recv ZDACR 36732
17-03-17 19:00:18.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:18.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:18.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:18.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35465
17-03-17 19:00:19.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35464
17-03-17 19:00:19.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.018 -07 000000382 INF: FPGA: Recv ZSGSRD 35462
17-03-17 19:00:19.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35462
17-03-17 19:00:19.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.038 -07 000000551 INF: FPGA: Recv ZSGSRD 35467
17-03-17 19:00:19.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.048 -07 000000608 INF: FPGA: Recv ZSGSRD 35466
17-03-17 19:00:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.058 -07 000000462 INF: FPGA: Recv ZSGSRD 35466
17-03-17 19:00:19.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.068 -07 000000476 INF: FPGA: Recv ZSGSRD 35464
17-03-17 19:00:19.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.078 -07 000000569 INF: FPGA: Recv ZSGSRD 35463
17-03-17 19:00:19.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:19.088 -07 000000561 INF: FPGA: Recv ZSGSRD 35464
17-03-17 19:00:19.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:19.098 -07 000000424 INF: FPGA: Recv ZPIEZORD 31356
17-03-17 19:00:19.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:19.108 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -9.1 V.
17-03-17 19:00:19.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35464 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35462 (-167.3 uncal um), Max = 35467 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 19:00:19.108 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35464, posNoise = 3, negNoise = 2
17-03-17 19:00:19.108 -07 000000610 INF: Z Motor: After move to -0.168148, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:19.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:00:19.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:19.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:19.108 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:19.108 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:19.108 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:19.108 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:19.108 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:19.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:19.108 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:19.108 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:19.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:00:19.108 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:19.118 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:19.118 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:19.118 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:19.118 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:19.118 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:00:19.118 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:00:19.128 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:00:19.128 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:00:19.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36908 150\n [Camera]
17-03-17 19:00:19.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:19.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:19.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:19.728 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:19.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:19.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:19.728 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:19.838 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:19.838 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-17 19:00:19.838 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:19.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:00:19.918 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36908 782
17-03-17 19:00:20.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:20.218 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.983999,
17-03-17 19:00:20.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:00:20.218 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 19:00:20.218 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:20.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:00:20.218 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:00:20.218 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:20.218 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:20.218 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 19:00:20.218 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:20.228 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 19:00:20.258 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:20.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:20.258 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:20.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:20.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:20.258 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:20.258 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:20.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) start.
17-03-17 19:00:20.268 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:20.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:00:20.448 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:20.448 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:20.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36908 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-17 19:00:20.448 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168550
17-03-17 19:00:20.448 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16855 mm
17-03-17 19:00:20.448 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:20.458 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = False)
17-03-17 19:00:20.458 -07 000000476 INF: Z Motor: Moving to -0.168551 mm, started at -0.168152 mm, distance = -0.40 um
17-03-17 19:00:20.458 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:00:20.458 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 19:00:20.458 -07 000000476 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-17 19:00:20.458 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:00:20.468 -07 000000476 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:20.468 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:20.468 -07 000000424 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:00:20.478 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:00:20.478 -07 000000415 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:20.478 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:20.478 -07 000000431 INF: FPGA: Recv ZDACR 36820
17-03-17 19:00:20.478 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:20.478 -07 000000415 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:00:20.488 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:20.488 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:20.488 -07 000000476 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:00:20.658 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:00:20.658 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:00:20.658 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:20.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 19:00:20.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:00:20.658 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:20.658 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:20.658 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:00:20.658 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:20.668 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 19:00:20.858 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:00:20.858 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:00:20.898 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:20.898 -07 000000623 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:00:20.908 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:20.908 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:20.908 -07 000000415 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:00:20.908 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.184 mm/sec
17-03-17 19:00:21.648 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:21.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:21.858 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:21.858 -07 000000551 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:00:21.868 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:21.868 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:21.888 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:21.888 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:21.888 -07 000000415 INF: Y Motor: Moved to 70.6890 after 1426 ms (table move)
17-03-17 19:00:21.888 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168551 mm (DAC = 36820)
17-03-17 19:00:21.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.888 -07 000000541 INF: FPGA: Recv ZSGSRD 35524
17-03-17 19:00:21.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:21.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35523
17-03-17 19:00:21.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.908 -07 000000012 INF: FPGA: Recv ZSGSRD 35525
17-03-17 19:00:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.918 -07 000000502 INF: FPGA: Recv ZSGSRD 35527
17-03-17 19:00:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.928 -07 000000462 INF: FPGA: Recv ZSGSRD 35526
17-03-17 19:00:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.938 -07 000000623 INF: FPGA: Recv ZSGSRD 35526
17-03-17 19:00:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.948 -07 000000569 INF: FPGA: Recv ZSGSRD 35525
17-03-17 19:00:21.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35528
17-03-17 19:00:21.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.968 -07 000000512 INF: FPGA: Recv ZSGSRD 35525
17-03-17 19:00:21.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:21.978 -07 000000486 INF: FPGA: Recv ZSGSRD 35528
17-03-17 19:00:21.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:21.988 -07 000000382 INF: FPGA: Recv ZPIEZORD 31431
17-03-17 19:00:21.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:21.998 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.0 V.
17-03-17 19:00:21.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35526 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35526 (-167.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35523 (-167.7 uncal um), Max = 35528 (-167.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:00:21.998 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35526, posNoise = 2, negNoise = 3
17-03-17 19:00:21.998 -07 000000610 INF: Z Motor: After move to -0.168551, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:21.998 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:00:21.998 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:22.048 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 19:00:22.048 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:22.048 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.168549912559335. ----------
17-03-17 19:00:22.048 -07 000000610 INF: Cycle	20	Tile	14	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:22.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36643, sync = True, waitForSettling = True)
17-03-17 19:00:22.048 -07 000000610 INF: Z Motor: Moving to -0.167741 mm, started at -0.168550 mm, distance = 0.81 um
17-03-17 19:00:22.048 -07 000000610 INF: FPGA: Xmit ZDACW 36643\n [Z Motor]
17-03-17 19:00:22.048 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:00:22.058 -07 000000610 INF: FPGA: 'ZDACW 36643' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:22.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:22.058 -07 000000623 INF: FPGA: Recv ZDACR 36643
17-03-17 19:00:22.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:22.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.218 -07 000000569 INF: FPGA: Recv ZSGSRD 35401
17-03-17 19:00:22.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:22.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.228 -07 000000462 INF: FPGA: Recv ZSGSRD 35398
17-03-17 19:00:22.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:22.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35404
17-03-17 19:00:22.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35400
17-03-17 19:00:22.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.258 -07 000000415 INF: FPGA: Recv ZSGSRD 35405
17-03-17 19:00:22.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.268 -07 000000382 INF: FPGA: Recv ZSGSRD 35402
17-03-17 19:00:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.278 -07 000000561 INF: FPGA: Recv ZSGSRD 35405
17-03-17 19:00:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.288 -07 000000512 INF: FPGA: Recv ZSGSRD 35401
17-03-17 19:00:22.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35399
17-03-17 19:00:22.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:22.308 -07 000000433 INF: FPGA: Recv ZSGSRD 35402
17-03-17 19:00:22.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:22.318 -07 000000608 INF: FPGA: Recv ZPIEZORD 31238
17-03-17 19:00:22.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:22.328 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.591 V. Piezo Error = -9.2 V.
17-03-17 19:00:22.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35402 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35402 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35398 (-166.9 uncal um), Max = 35405 (-166.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:00:22.328 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35402, posNoise = 3, negNoise = 4
17-03-17 19:00:22.328 -07 000000610 INF: Z Motor: After move to -0.167741, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:22.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:00:22.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:22.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:22.328 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:22.328 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:22.328 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:22.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:22.328 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:22.328 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:22.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:22.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:22.328 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:22.328 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:22.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:22.328 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:22.338 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:22.338 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:22.338 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:00:22.338 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:00:22.348 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 19:00:22.348 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:00:22.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36820 150\n [Camera]
17-03-17 19:00:22.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:22.948 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:22.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:22.948 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:22.948 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:22.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1061425200, 0x0, 391868352) start.
17-03-17 19:00:22.948 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:22.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:22.948 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:22.948 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:22.948 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1096847464, 0x0, 418435064) start.
17-03-17 19:00:23.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36820 782
17-03-17 19:00:23.288 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:23.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1061425200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:00:23.328 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:00:23.328 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:23.328 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1096847464, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:00:23.328 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:00:23.328 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:23.328 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:23.328 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:00:23.328 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:23.338 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:00:23.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:23.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:23.478 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:23.478 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:23.478 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1132269728, 0x0, 391868352) start.
17-03-17 19:00:23.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:23.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:23.488 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:23.488 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:23.488 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:00:23.668 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:00:23.668 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:23.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36820 150' command took 2 ms to send, 1317 ms to get response, and 1322 ms overall
17-03-17 19:00:23.668 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168392
17-03-17 19:00:23.668 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16839 mm
17-03-17 19:00:23.668 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:23.678 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:00:23.678 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 19:00:23.678 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:23.678 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36785, sync = True, waitForSettling = False)
17-03-17 19:00:23.678 -07 000000561 INF: Z Motor: Moving to -0.168391 mm, started at -0.167753 mm, distance = -0.64 um
17-03-17 19:00:23.678 -07 000000623 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:00:23.688 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:23.688 -07 000000608 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:23.688 -07 000000561 INF: FPGA: Xmit ZDACW 36785\n [Z Motor]
17-03-17 19:00:23.688 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:00:23.688 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:23.688 -07 000000608 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:00:23.698 -07 000000561 INF: FPGA: 'ZDACW 36785' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:00:23.698 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:23.708 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:23.708 -07 000000569 INF: FPGA: Recv ZDACR 36785
17-03-17 19:00:23.718 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:23.718 -07 000000561 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:00:23.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1132269728, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:00:23.868 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:00:23.868 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:23.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:00:23.868 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:00:23.868 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:23.868 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:00:23.868 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:00:23.878 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:23.878 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:00:24.068 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:00:24.068 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 19:00:24.108 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:24.108 -07 000000623 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:00:24.118 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:24.118 -07 000000608 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:24.118 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:00:24.118 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 19:00:25.068 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:25.068 -07 000000623 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:00:25.078 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.078 -07 000000608 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:25.098 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:25.098 -07 000000608 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:25.098 -07 000000608 INF: Y Motor: Moved to 71.5195 after 1419 ms (table move)
17-03-17 19:00:25.098 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168391 mm (DAC = 36785)
17-03-17 19:00:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35505
17-03-17 19:00:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.108 -07 000000623 INF: FPGA: Recv ZSGSRD 35496
17-03-17 19:00:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.118 -07 000000569 INF: FPGA: Recv ZSGSRD 35503
17-03-17 19:00:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.128 -07 000000424 INF: FPGA: Recv ZSGSRD 35504
17-03-17 19:00:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.138 -07 000000608 INF: FPGA: Recv ZSGSRD 35509
17-03-17 19:00:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.148 -07 000000502 INF: FPGA: Recv ZSGSRD 35505
17-03-17 19:00:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.158 -07 000000623 INF: FPGA: Recv ZSGSRD 35507
17-03-17 19:00:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.168 -07 000000569 INF: FPGA: Recv ZSGSRD 35503
17-03-17 19:00:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.178 -07 000000431 INF: FPGA: Recv ZSGSRD 35508
17-03-17 19:00:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.188 -07 000000608 INF: FPGA: Recv ZSGSRD 35497
17-03-17 19:00:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:25.198 -07 000000382 INF: FPGA: Recv ZPIEZORD 31379
17-03-17 19:00:25.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.208 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.1 V.
17-03-17 19:00:25.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35504 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35504 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35496 (-167.5 uncal um), Max = 35509 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:00:25.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35504, posNoise = 5, negNoise = 8
17-03-17 19:00:25.208 -07 000000610 INF: Z Motor: After move to -0.168391, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:25.208 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 107 ms (allowed 150 ms), total time = 1527 ms
17-03-17 19:00:25.208 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:25.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 19:00:25.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:25.258 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.168408579892216. ----------
17-03-17 19:00:25.258 -07 000000610 INF: Cycle	20	Tile	15	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:25.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36608, sync = True, waitForSettling = True)
17-03-17 19:00:25.258 -07 000000610 INF: Z Motor: Moving to -0.167581 mm, started at -0.168409 mm, distance = 0.83 um
17-03-17 19:00:25.268 -07 000000610 INF: FPGA: Xmit ZDACW 36608\n [Z Motor]
17-03-17 19:00:25.268 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:00:25.278 -07 000000610 INF: FPGA: 'ZDACW 36608' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:00:25.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:25.278 -07 000000541 INF: FPGA: Recv ZDACR 36608
17-03-17 19:00:25.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:25.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.438 -07 000000623 INF: FPGA: Recv ZSGSRD 35378
17-03-17 19:00:25.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:25.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.448 -07 000000462 INF: FPGA: Recv ZSGSRD 35382
17-03-17 19:00:25.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35376
17-03-17 19:00:25.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35380
17-03-17 19:00:25.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.478 -07 000000541 INF: FPGA: Recv ZSGSRD 35376
17-03-17 19:00:25.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.488 -07 000000608 INF: FPGA: Recv ZSGSRD 35377
17-03-17 19:00:25.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.498 -07 000000438 INF: FPGA: Recv ZSGSRD 35372
17-03-17 19:00:25.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.508 -07 000000433 INF: FPGA: Recv ZSGSRD 35376
17-03-17 19:00:25.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.518 -07 000000512 INF: FPGA: Recv ZSGSRD 35377
17-03-17 19:00:25.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:25.528 -07 000000012 INF: FPGA: Recv ZSGSRD 35376
17-03-17 19:00:25.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:25.538 -07 000000623 INF: FPGA: Recv ZPIEZORD 31228
17-03-17 19:00:25.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:25.548 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.1 V.
17-03-17 19:00:25.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35377 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35376 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35372 (-166.7 uncal um), Max = 35382 (-166.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:00:25.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35377, posNoise = 5, negNoise = 5
17-03-17 19:00:25.548 -07 000000610 INF: Z Motor: After move to -0.167581, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:25.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 19:00:25.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:25.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:25.548 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:25.548 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:25.548 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:25.548 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:25.548 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:25.548 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:25.548 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:25.548 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:25.548 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:25.548 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:25.558 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:00:25.558 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:25.558 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 19:00:25.558 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:25.568 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 19:00:25.568 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:00:25.578 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:00:25.578 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.007176,
17-03-17 19:00:25.578 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 19:00:25.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36785 150\n [Camera]
17-03-17 19:00:25.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:26.188 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:26.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:26.188 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:26.188 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:26.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:00:26.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:26.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:26.198 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:26.198 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:26.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:00:26.388 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36785 782
17-03-17 19:00:26.528 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:26.578 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 19:00:26.578 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 19:00:26.578 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:26.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 19:00:26.588 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:00:26.588 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:26.588 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:26.588 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:26.588 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:00:26.588 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:00:26.648 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:26.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:26.728 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:26.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:26.728 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:26.728 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:26.728 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 19:00:26.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:26.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:26.728 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:26.728 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:26.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 19:00:26.918 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:26.918 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:26.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36785 150' command took 2 ms to send, 1312 ms to get response, and 1339 ms overall
17-03-17 19:00:26.918 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167483
17-03-17 19:00:26.918 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16748 mm
17-03-17 19:00:26.918 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:26.918 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:00:26.918 -07 000000382 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 19:00:26.918 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:26.918 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 36587, sync = True, waitForSettling = False)
17-03-17 19:00:26.918 -07 000000608 INF: Z Motor: Moving to -0.167485 mm, started at -0.167593 mm, distance = 0.11 um
17-03-17 19:00:26.918 -07 000000433 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:00:26.928 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:00:26.928 -07 000000382 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:26.928 -07 000000382 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:26.928 -07 000000382 INF: Y Motor: Moving 1349 steps-27
17-03-17 19:00:26.928 -07 000000608 INF: FPGA: Xmit ZDACW 36587\n [Z Motor]
17-03-17 19:00:26.928 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 19:00:26.938 -07 000000608 INF: FPGA: 'ZDACW 36587' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:26.948 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:26.958 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:26.958 -07 000000569 INF: FPGA: Recv ZDACR 36587
17-03-17 19:00:26.968 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:26.968 -07 000000608 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 19:00:27.108 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:00:27.108 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:00:27.108 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:27.108 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:00:27.108 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:00:27.108 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:27.108 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:27.118 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:27.118 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:00:27.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:00:27.318 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:00:27.318 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:00:27.358 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:27.358 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:00:27.368 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:27.368 -07 000000382 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:27.368 -07 000000382 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:00:27.368 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 19:00:28.318 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:28.318 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:00:28.328 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:28.328 -07 000000382 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:28.348 -07 000000382 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:28.348 -07 000000382 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:28.348 -07 000000382 INF: Y Motor: Moved to 72.3501 after 1424 ms (table move)
17-03-17 19:00:28.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167485 mm (DAC = 36587)
17-03-17 19:00:28.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.348 -07 000000608 INF: FPGA: Recv ZSGSRD 35360
17-03-17 19:00:28.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:28.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.358 -07 000000486 INF: FPGA: Recv ZSGSRD 35359
17-03-17 19:00:28.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.368 -07 000000438 INF: FPGA: Recv ZSGSRD 35358
17-03-17 19:00:28.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35359
17-03-17 19:00:28.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35360
17-03-17 19:00:28.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.398 -07 000000551 INF: FPGA: Recv ZSGSRD 35363
17-03-17 19:00:28.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.408 -07 000000512 INF: FPGA: Recv ZSGSRD 35365
17-03-17 19:00:28.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.418 -07 000000486 INF: FPGA: Recv ZSGSRD 35362
17-03-17 19:00:28.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.428 -07 000000012 INF: FPGA: Recv ZSGSRD 35361
17-03-17 19:00:28.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.438 -07 000000415 INF: FPGA: Recv ZSGSRD 35359
17-03-17 19:00:28.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:28.448 -07 000000551 INF: FPGA: Recv ZPIEZORD 31226
17-03-17 19:00:28.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.458 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.1 V.
17-03-17 19:00:28.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35361 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35358 (-166.6 uncal um), Max = 35365 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:00:28.458 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35361, posNoise = 4, negNoise = 3
17-03-17 19:00:28.458 -07 000000610 INF: Z Motor: After move to -0.167485, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:28.458 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 106 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:00:28.458 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:28.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 19:00:28.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:28.508 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.167489917555944. ----------
17-03-17 19:00:28.508 -07 000000610 INF: Cycle	20	Tile	16	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:28.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36410, sync = True, waitForSettling = True)
17-03-17 19:00:28.508 -07 000000610 INF: Z Motor: Moving to -0.166674 mm, started at -0.167490 mm, distance = 0.82 um
17-03-17 19:00:28.508 -07 000000610 INF: FPGA: Xmit ZDACW 36410\n [Z Motor]
17-03-17 19:00:28.508 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 19:00:28.518 -07 000000610 INF: FPGA: 'ZDACW 36410' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:28.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:28.518 -07 000000502 INF: FPGA: Recv ZDACR 36410
17-03-17 19:00:28.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:28.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.678 -07 000000512 INF: FPGA: Recv ZSGSRD 35234
17-03-17 19:00:28.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:28.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.688 -07 000000486 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:00:28.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.698 -07 000000424 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:00:28.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.708 -07 000000608 INF: FPGA: Recv ZSGSRD 35240
17-03-17 19:00:28.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35234
17-03-17 19:00:28.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35240
17-03-17 19:00:28.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.738 -07 000000541 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:00:28.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.748 -07 000000476 INF: FPGA: Recv ZSGSRD 35243
17-03-17 19:00:28.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:28.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.758 -07 000000382 INF: FPGA: Recv ZSGSRD 35234
17-03-17 19:00:28.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:28.768 -07 000000512 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:00:28.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:28.778 -07 000000012 INF: FPGA: Recv ZPIEZORD 31025
17-03-17 19:00:28.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:28.788 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.3 V.
17-03-17 19:00:28.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35236 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35233 (-165.8 uncal um), Max = 35243 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:00:28.788 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35236, posNoise = 7, negNoise = 3
17-03-17 19:00:28.788 -07 000000610 INF: Z Motor: After move to -0.166674, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:28.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:00:28.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:28.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:28.788 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:28.788 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:28.788 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:28.788 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:28.788 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:28.788 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:28.788 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:00:28.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:28.788 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:28.788 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:28.798 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:00:28.798 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:28.798 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:00:28.798 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:28.808 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:00:28.808 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:00:28.808 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:00:28.808 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:00:28.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36587 150\n [Camera]
17-03-17 19:00:29.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:29.408 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:29.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:29.408 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:29.408 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:29.408 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 19:00:29.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:29.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:29.418 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:29.418 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:29.418 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 19:00:29.608 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36587 782
17-03-17 19:00:29.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:29.798 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:00:29.798 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:00:29.798 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:29.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:00:29.798 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:00:29.798 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:29.808 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:29.808 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:29.808 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:00:29.808 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:00:29.948 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:29.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:29.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:29.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:29.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 19:00:29.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:29.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:29.948 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:29.948 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:29.948 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 19:00:30.138 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:00:30.138 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:30.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36587 150' command took 2 ms to send, 1314 ms to get response, and 1322 ms overall
17-03-17 19:00:30.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 19:00:30.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166686891038224. ------
17-03-17 19:00:30.278 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17324 mm
17-03-17 19:00:30.278 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:30.278 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:30.278 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:00:30.278 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:00:30.278 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37845, sync = True, waitForSettling = False)
17-03-17 19:00:30.278 -07 000000382 INF: Z Motor: Moving to -0.173243 mm, started at -0.166687 mm, distance = -6.56 um
17-03-17 19:00:30.278 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:30.288 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:30.288 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:30.288 -07 000000541 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:00:30.298 -07 000000382 INF: FPGA: Xmit ZDACW 37845\n [Z Motor]
17-03-17 19:00:30.298 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:00:30.298 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:30.298 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:30.298 -07 000000569 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:00:30.298 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:00:30.308 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:00:30.308 -07 000000382 INF: FPGA: 'ZDACW 37845' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:00:30.318 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:30.328 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:30.328 -07 000000476 INF: FPGA: Recv ZDACR 37845
17-03-17 19:00:30.338 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:30.338 -07 000000382 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 19:00:30.348 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 19:00:30.348 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:00:30.348 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:30.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:00:30.348 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 19:00:30.348 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:30.348 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:30.348 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:30.348 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:00:30.358 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 19:00:30.508 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:00:30.508 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 19:00:30.688 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 19:00:30.688 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:00:30.728 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:30.728 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:00:30.738 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:30.738 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:30.738 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:00:30.738 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:00:30.948 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.981281,
17-03-17 19:00:31.648 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:31.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:31.688 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:31.688 -07 000000424 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:00:31.698 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:31.698 -07 000000569 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:31.718 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:31.718 -07 000000569 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:00:31.718 -07 000000569 INF: Y Motor: Moved to 73.1768 after 1436 ms (table move)
17-03-17 19:00:31.718 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173243 mm (DAC = 37845)
17-03-17 19:00:31.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.718 -07 000000502 INF: FPGA: Recv ZSGSRD 36255
17-03-17 19:00:31.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:31.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.728 -07 000000424 INF: FPGA: Recv ZSGSRD 36254
17-03-17 19:00:31.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.738 -07 000000569 INF: FPGA: Recv ZSGSRD 36251
17-03-17 19:00:31.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.748 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.748 -07 000000382 INF: FPGA: Recv ZSGSRD 36260
17-03-17 19:00:31.758 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.758 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.758 -07 000000433 INF: FPGA: Recv ZSGSRD 36257
17-03-17 19:00:31.768 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.768 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.768 -07 000000512 INF: FPGA: Recv ZSGSRD 36263
17-03-17 19:00:31.778 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.778 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.778 -07 000000561 INF: FPGA: Recv ZSGSRD 36251
17-03-17 19:00:31.788 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.788 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.788 -07 000000502 INF: FPGA: Recv ZSGSRD 36260
17-03-17 19:00:31.798 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.798 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.798 -07 000000462 INF: FPGA: Recv ZSGSRD 36257
17-03-17 19:00:31.808 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.808 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:31.808 -07 000000512 INF: FPGA: Recv ZSGSRD 36252
17-03-17 19:00:31.818 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.818 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:31.818 -07 000000415 INF: FPGA: Recv ZPIEZORD 32427
17-03-17 19:00:31.828 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:31.828 -07 000000486 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.775 V. Piezo Error = -8.5 V.
17-03-17 19:00:31.828 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36256 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36256 (-172.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36251 (-172.3 uncal um), Max = 36263 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:00:31.828 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36256, posNoise = 7, negNoise = 5
17-03-17 19:00:31.828 -07 000000486 INF: Z Motor: After move to -0.173243, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:31.828 -07 000000486 INF: Z Motor: Settle wait time = 1438 ms, measure time = 107 ms (allowed 150 ms), total time = 1545 ms
17-03-17 19:00:31.828 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:31.878 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 19:00:31.878 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:31.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:31.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:31.878 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:31.878 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:31.878 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:00:31.878 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:31.878 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:31.878 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:00:31.888 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:31.888 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:00:31.898 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:00:31.898 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 19:00:31.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:00:31.948 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:00:32.148 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:00:32.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:00:32.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:00:32.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 19:00:32.188 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:00:32.188 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 19:00:32.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 19:00:32.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:00:32.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:32.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:00:32.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:00:32.288 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:32.288 -07 000000424 INF: Autofocus start
17-03-17 19:00:32.288 -07 000000424 INF: MeasureProfile start
17-03-17 19:00:32.288 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:32.298 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:32.298 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:00:32.298 -07 000000424 INF: MeasureProfile done
17-03-17 19:00:32.298 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-17 19:00:32.298 -07 000000424 INF: Autofocus finished
17-03-17 19:00:32.498 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:00:32.498 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:00:32.498 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.17323958742282. ----------
17-03-17 19:00:32.498 -07 000000610 INF: Cycle	20	Tile	17	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:32.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36395, sync = True, waitForSettling = True)
17-03-17 19:00:32.508 -07 000000610 INF: Z Motor: Moving to -0.166606 mm, started at -0.173240 mm, distance = 6.63 um
17-03-17 19:00:32.508 -07 000000610 INF: FPGA: Xmit ZDACW 36395\n [Z Motor]
17-03-17 19:00:32.508 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:00:32.518 -07 000000610 INF: FPGA: 'ZDACW 36395' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:32.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:32.518 -07 000000433 INF: FPGA: Recv ZDACR 36395
17-03-17 19:00:32.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:00:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:32.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35230
17-03-17 19:00:32.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.698 -07 000000431 INF: FPGA: Recv ZSGSRD 35223
17-03-17 19:00:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.708 -07 000000512 INF: FPGA: Recv ZSGSRD 35224
17-03-17 19:00:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.718 -07 000000561 INF: FPGA: Recv ZSGSRD 35226
17-03-17 19:00:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.728 -07 000000424 INF: FPGA: Recv ZSGSRD 35231
17-03-17 19:00:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.738 -07 000000438 INF: FPGA: Recv ZSGSRD 35230
17-03-17 19:00:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.748 -07 000000431 INF: FPGA: Recv ZSGSRD 35225
17-03-17 19:00:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.758 -07 000000502 INF: FPGA: Recv ZSGSRD 35223
17-03-17 19:00:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:32.768 -07 000000608 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:00:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:32.778 -07 000000569 INF: FPGA: Recv ZPIEZORD 31055
17-03-17 19:00:32.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:32.788 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.2 V.
17-03-17 19:00:32.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35227 (-165.8 uncal um), Error = 0.8 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35223 (-165.7 uncal um), Max = 35231 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:00:32.788 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35227, posNoise = 4, negNoise = 4
17-03-17 19:00:32.788 -07 000000610 INF: Z Motor: After move to -0.166606, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:32.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 19:00:32.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:32.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:32.788 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:32.788 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:32.788 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:32.788 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:32.788 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:32.788 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:32.788 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:00:32.788 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:32.788 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:32.788 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:32.798 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:00:32.798 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:32.798 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:32.798 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:32.808 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:00:32.808 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:00:32.808 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:00:32.808 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:00:32.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36572 150\n [Camera]
17-03-17 19:00:33.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:33.408 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:33.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:33.408 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:33.408 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:33.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:33.408 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:33.408 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:33.408 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) start.
17-03-17 19:00:33.418 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:33.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:00:33.598 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36572 782
17-03-17 19:00:33.748 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:33.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:00:33.788 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:00:33.788 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:33.788 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:33.788 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:00:33.788 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:00:33.798 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:33.798 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 19:00:33.798 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:33.798 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:00:33.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:33.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:33.938 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:33.938 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:33.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1096847464, 0x0, 391868352) start.
17-03-17 19:00:33.938 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:33.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:33.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:34.058 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:34.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:00:34.128 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:34.138 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:34.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36572 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-17 19:00:34.138 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.167085
17-03-17 19:00:34.138 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16709 mm
17-03-17 19:00:34.138 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:34.138 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:00:34.138 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 36500, sync = True, waitForSettling = False)
17-03-17 19:00:34.138 -07 000000476 INF: Z Motor: Moving to -0.167086 mm, started at -0.166629 mm, distance = -0.46 um
17-03-17 19:00:34.138 -07 000000476 INF: FPGA: Xmit ZDACW 36500\n [Z Motor]
17-03-17 19:00:34.138 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:00:34.138 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:00:34.148 -07 000000476 INF: FPGA: 'ZDACW 36500' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:34.148 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:34.148 -07 000000623 INF: FPGA: Recv ZDACR 36500
17-03-17 19:00:34.158 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:34.158 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:34.158 -07 000000476 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 19:00:34.158 -07 000000608 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:00:34.168 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:00:34.168 -07 000000424 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:34.168 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:34.168 -07 000000424 INF: Y Motor: Moving 1353 steps-33
17-03-17 19:00:34.168 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:34.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1096847464, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 19:00:34.328 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:00:34.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:34.338 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:00:34.338 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:00:34.448 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:00:34.448 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:00:34.448 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:34.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:34.458 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 19:00:34.538 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 19:00:34.538 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:00:34.568 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:34.568 -07 000000382 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:00:34.578 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:34.578 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:34.578 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:00:34.578 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.238 mm/sec
17-03-17 19:00:35.528 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:35.528 -07 000000382 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:00:35.538 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:35.538 -07 000000424 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:35.548 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:35.548 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:00:35.548 -07 000000424 INF: Y Motor: Moved to 74.0088 after 1410 ms (table move)
17-03-17 19:00:35.548 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167086 mm (DAC = 36500)
17-03-17 19:00:35.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.558 -07 000000382 INF: FPGA: Recv ZSGSRD 35303
17-03-17 19:00:35.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:00:35.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.558 -07 000000431 INF: FPGA: Recv ZSGSRD 35302
17-03-17 19:00:35.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:35.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.568 -07 000000415 INF: FPGA: Recv ZSGSRD 35292
17-03-17 19:00:35.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.578 -07 000000012 INF: FPGA: Recv ZSGSRD 35295
17-03-17 19:00:35.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.588 -07 000000608 INF: FPGA: Recv ZSGSRD 35299
17-03-17 19:00:35.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.598 -07 000000541 INF: FPGA: Recv ZSGSRD 35301
17-03-17 19:00:35.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.608 -07 000000431 INF: FPGA: Recv ZSGSRD 35308
17-03-17 19:00:35.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.618 -07 000000569 INF: FPGA: Recv ZSGSRD 35303
17-03-17 19:00:35.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.628 -07 000000012 INF: FPGA: Recv ZSGSRD 35301
17-03-17 19:00:35.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.638 -07 000000476 INF: FPGA: Recv ZSGSRD 35293
17-03-17 19:00:35.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:35.648 -07 000000561 INF: FPGA: Recv ZPIEZORD 31175
17-03-17 19:00:35.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.658 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.1 V.
17-03-17 19:00:35.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35300 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35301 (-166.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35292 (-166.2 uncal um), Max = 35308 (-166.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:00:35.658 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35300, posNoise = 8, negNoise = 8
17-03-17 19:00:35.658 -07 000000610 INF: Z Motor: After move to -0.167086, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:35.658 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 103 ms (allowed 150 ms), total time = 1515 ms
17-03-17 19:00:35.658 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:35.708 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 19:00:35.708 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:35.708 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.167098040615297. ----------
17-03-17 19:00:35.708 -07 000000610 INF: Cycle	20	Tile	18	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:35.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36323, sync = True, waitForSettling = True)
17-03-17 19:00:35.708 -07 000000610 INF: Z Motor: Moving to -0.166276 mm, started at -0.167098 mm, distance = 0.82 um
17-03-17 19:00:35.708 -07 000000610 INF: FPGA: Xmit ZDACW 36323\n [Z Motor]
17-03-17 19:00:35.708 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:00:35.718 -07 000000610 INF: FPGA: 'ZDACW 36323' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:35.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:35.718 -07 000000476 INF: FPGA: Recv ZDACR 36323
17-03-17 19:00:35.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:35.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.878 -07 000000486 INF: FPGA: Recv ZSGSRD 35175
17-03-17 19:00:35.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:35.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.888 -07 000000623 INF: FPGA: Recv ZSGSRD 35173
17-03-17 19:00:35.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.898 -07 000000415 INF: FPGA: Recv ZSGSRD 35174
17-03-17 19:00:35.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.908 -07 000000462 INF: FPGA: Recv ZSGSRD 35176
17-03-17 19:00:35.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.918 -07 000000476 INF: FPGA: Recv ZSGSRD 35178
17-03-17 19:00:35.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.928 -07 000000382 INF: FPGA: Recv ZSGSRD 35175
17-03-17 19:00:35.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.938 -07 000000424 INF: FPGA: Recv ZSGSRD 35178
17-03-17 19:00:35.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.948 -07 000000569 INF: FPGA: Recv ZSGSRD 35176
17-03-17 19:00:35.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.958 -07 000000462 INF: FPGA: Recv ZSGSRD 35172
17-03-17 19:00:35.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:35.968 -07 000000476 INF: FPGA: Recv ZSGSRD 35167
17-03-17 19:00:35.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:35.978 -07 000000608 INF: FPGA: Recv ZPIEZORD 31013
17-03-17 19:00:35.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:35.988 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.2 V.
17-03-17 19:00:35.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35174 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35175 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35167 (-165.4 uncal um), Max = 35178 (-165.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:00:35.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35174, posNoise = 4, negNoise = 7
17-03-17 19:00:35.988 -07 000000610 INF: Z Motor: After move to -0.166276, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:35.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:00:35.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:35.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:35.988 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:35.988 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:35.988 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:35.988 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:35.988 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:35.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:35.988 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:00:35.988 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:35.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:00:35.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:35.998 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:35.998 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:35.998 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:00:35.998 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:36.008 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 19:00:36.008 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:00:36.008 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:00:36.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:00:36.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36500 150\n [Camera]
17-03-17 19:00:36.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:36.308 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.981281,
17-03-17 19:00:36.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:36.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:36.608 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:36.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:36.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:36.618 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:36.618 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:36.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:00:36.628 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:36.628 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:00:36.648 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:36.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36500 782
17-03-17 19:00:36.948 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:36.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:00:36.998 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:00:36.998 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:36.998 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:36.998 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:00:37.008 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:00:37.008 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:00:37.008 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:37.008 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:37.018 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:00:37.148 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:37.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:37.148 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:37.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:37.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:37.148 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:37.158 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:37.158 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:00:37.158 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:37.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) start.
17-03-17 19:00:37.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:37.338 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:37.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36500 150' command took 2 ms to send, 1313 ms to get response, and 1324 ms overall
17-03-17 19:00:37.338 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166680
17-03-17 19:00:37.338 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16668 mm
17-03-17 19:00:37.338 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:37.338 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:00:37.338 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:00:37.338 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:37.338 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 36411, sync = True, waitForSettling = False)
17-03-17 19:00:37.338 -07 000000476 INF: Z Motor: Moving to -0.166679 mm, started at -0.166289 mm, distance = -0.39 um
17-03-17 19:00:37.348 -07 000000476 INF: FPGA: Xmit ZDACW 36411\n [Z Motor]
17-03-17 19:00:37.348 -07 000000608 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:00:37.348 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:00:37.348 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 19:00:37.348 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:37.348 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:37.348 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:00:37.358 -07 000000476 INF: FPGA: 'ZDACW 36411' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:00:37.358 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:37.358 -07 000000512 INF: FPGA: Recv ZDACR 36411
17-03-17 19:00:37.368 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:37.368 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:37.368 -07 000000476 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 19:00:37.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:00:37.538 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:00:37.538 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:37.538 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:00:37.538 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:00:37.538 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:37.538 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:37.538 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:00:37.538 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:37.548 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:00:37.738 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 19:00:37.738 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 19:00:37.758 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:37.768 -07 000000486 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:00:37.778 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:37.778 -07 000000382 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:37.778 -07 000000382 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:00:37.778 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 19:00:38.728 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:38.728 -07 000000486 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:00:38.738 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.738 -07 000000382 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:38.748 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:38.748 -07 000000382 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:38.748 -07 000000382 INF: Y Motor: Moved to 74.8325 after 1406 ms (table move)
17-03-17 19:00:38.748 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166679 mm (DAC = 36411)
17-03-17 19:00:38.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.758 -07 000000486 INF: FPGA: Recv ZSGSRD 35237
17-03-17 19:00:38.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:00:38.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35237
17-03-17 19:00:38.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.768 -07 000000462 INF: FPGA: Recv ZSGSRD 35232
17-03-17 19:00:38.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.778 -07 000000433 INF: FPGA: Recv ZSGSRD 35232
17-03-17 19:00:38.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35229
17-03-17 19:00:38.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.798 -07 000000561 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:00:38.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.808 -07 000000415 INF: FPGA: Recv ZSGSRD 35239
17-03-17 19:00:38.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.818 -07 000000462 INF: FPGA: Recv ZSGSRD 35246
17-03-17 19:00:38.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.828 -07 000000433 INF: FPGA: Recv ZSGSRD 35245
17-03-17 19:00:38.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:38.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35233
17-03-17 19:00:38.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:38.848 -07 000000486 INF: FPGA: Recv ZPIEZORD 31096
17-03-17 19:00:38.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.858 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.1 V.
17-03-17 19:00:38.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35236 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35235 (-165.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35229 (-165.8 uncal um), Max = 35246 (-165.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:00:38.858 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35236, posNoise = 10, negNoise = 7
17-03-17 19:00:38.858 -07 000000610 INF: Z Motor: After move to -0.166679, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:38.858 -07 000000610 INF: Z Motor: Settle wait time = 1408 ms, measure time = 104 ms (allowed 150 ms), total time = 1512 ms
17-03-17 19:00:38.858 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:38.908 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1564 ms
17-03-17 19:00:38.908 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:38.908 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.166686891038224. ----------
17-03-17 19:00:38.908 -07 000000610 INF: Cycle	20	Tile	19	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:38.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36235, sync = True, waitForSettling = True)
17-03-17 19:00:38.908 -07 000000610 INF: Z Motor: Moving to -0.165873 mm, started at -0.166687 mm, distance = 0.81 um
17-03-17 19:00:38.908 -07 000000610 INF: FPGA: Xmit ZDACW 36235\n [Z Motor]
17-03-17 19:00:38.908 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:00:38.918 -07 000000610 INF: FPGA: 'ZDACW 36235' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:38.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:38.918 -07 000000476 INF: FPGA: Recv ZDACR 36235
17-03-17 19:00:38.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:38.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:39.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35113
17-03-17 19:00:39.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:39.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.088 -07 000000551 INF: FPGA: Recv ZSGSRD 35107
17-03-17 19:00:39.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.098 -07 000000462 INF: FPGA: Recv ZSGSRD 35114
17-03-17 19:00:39.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35111
17-03-17 19:00:39.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.118 -07 000000608 INF: FPGA: Recv ZSGSRD 35106
17-03-17 19:00:39.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35109
17-03-17 19:00:39.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35114
17-03-17 19:00:39.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.148 -07 000000438 INF: FPGA: Recv ZSGSRD 35112
17-03-17 19:00:39.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.158 -07 000000569 INF: FPGA: Recv ZSGSRD 35106
17-03-17 19:00:39.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:39.168 -07 000000476 INF: FPGA: Recv ZSGSRD 35108
17-03-17 19:00:39.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:39.178 -07 000000486 INF: FPGA: Recv ZPIEZORD 30921
17-03-17 19:00:39.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:39.188 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -9.2 V.
17-03-17 19:00:39.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35110 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35110 (-165.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35106 (-165.0 uncal um), Max = 35114 (-165.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:00:39.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35110, posNoise = 4, negNoise = 4
17-03-17 19:00:39.188 -07 000000610 INF: Z Motor: After move to -0.165873, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:39.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:00:39.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:39.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:39.188 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:39.188 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:39.188 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:39.188 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:39.188 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:39.188 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:39.188 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:39.188 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:39.188 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:39.188 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:39.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:39.198 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:39.198 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:39.198 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:39.198 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:00:39.198 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:00:39.208 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:00:39.208 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:00:39.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36411 150\n [Camera]
17-03-17 19:00:39.408 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:39.808 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:39.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:39.808 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:39.808 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:39.808 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1132269728, 0x0, 391868352) start.
17-03-17 19:00:39.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:39.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:39.808 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:39.808 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:39.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:00:39.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36411 782
17-03-17 19:00:40.148 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:40.208 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1132269728, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:00:40.208 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:00:40.208 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:40.208 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:00:40.208 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:00:40.208 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:40.208 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:40.208 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 19:00:40.218 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:40.218 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:00:40.338 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:40.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:40.338 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:40.338 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:40.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:00:40.338 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:40.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:40.338 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:40.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:40.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:00:40.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:40.528 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:40.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36411 150' command took 2 ms to send, 1317 ms to get response, and 1322 ms overall
17-03-17 19:00:40.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:00:40.718 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:00:40.718 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:40.728 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:40.728 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:00:40.728 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:00:40.768 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 19:00:40.828 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:00:40.828 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:00:40.828 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:40.838 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:40.838 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 19:00:40.838 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:00:40.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:00:40.878 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 19:00:40.878 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 19:00:40.888 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 19:00:40.898 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:40.898 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 19:00:41.398 -07 000000438 INF: FPGA: Recv EMIN
17-03-17 19:00:41.398 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 19:00:41.398 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 19:00:41.398 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 19:00:41.408 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:41.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:00:41.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165877440308362. ------
17-03-17 19:00:41.408 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14024 mm
17-03-17 19:00:41.408 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:41.408 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:41.418 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 19:00:41.418 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 19:00:41.418 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:41.418 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30636, sync = True, waitForSettling = False)
17-03-17 19:00:41.418 -07 000000502 INF: Z Motor: Moving to -0.140243 mm, started at -0.165877 mm, distance = 25.63 um
17-03-17 19:00:41.418 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:41.418 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:00:41.418 -07 000000608 INF: FPGA: Recv YRDPOS 153259
17-03-17 19:00:41.428 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:41.428 -07 000000382 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:41.428 -07 000000502 INF: FPGA: Xmit ZDACW 30636\n [Z Motor]
17-03-17 19:00:41.428 -07 000000382 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 19:00:41.428 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 19:00:41.428 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:00:41.438 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:00:41.438 -07 000000502 INF: FPGA: 'ZDACW 30636' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:41.448 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 19:00:41.458 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:41.458 -07 000000623 INF: FPGA: Recv ZDACR 30636
17-03-17 19:00:41.468 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:41.468 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 19:00:41.638 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:00:41.638 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 19:00:41.648 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:41.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:41.668 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.005817,
17-03-17 19:00:43.068 -07 000000623 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 19:00:43.068 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 19:00:43.068 -07 000000382 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 19:00:43.068 -07 000000382 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 19:00:43.068 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 19:00:45.918 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:45.918 -07 000000608 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:00:45.928 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:45.928 -07 000000382 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:45.948 -07 000000382 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:45.948 -07 000000382 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 19:00:45.948 -07 000000382 INF: Y Motor: Moved to 59.9116 after 4538 ms
17-03-17 19:00:45.958 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140243 mm (DAC = 30636)
17-03-17 19:00:45.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:45.958 -07 000000438 INF: FPGA: Recv ZSGSRD 31126
17-03-17 19:00:45.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:45.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:45.968 -07 000000569 INF: FPGA: Recv ZSGSRD 31123
17-03-17 19:00:45.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:45.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:45.978 -07 000000476 INF: FPGA: Recv ZSGSRD 31117
17-03-17 19:00:45.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:45.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:45.988 -07 000000012 INF: FPGA: Recv ZSGSRD 31120
17-03-17 19:00:45.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:45.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:45.998 -07 000000382 INF: FPGA: Recv ZSGSRD 31121
17-03-17 19:00:46.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.008 -07 000000424 INF: FPGA: Recv ZSGSRD 31123
17-03-17 19:00:46.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.018 -07 000000462 INF: FPGA: Recv ZSGSRD 31128
17-03-17 19:00:46.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.028 -07 000000623 INF: FPGA: Recv ZSGSRD 31113
17-03-17 19:00:46.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.038 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.038 -07 000000608 INF: FPGA: Recv ZSGSRD 31120
17-03-17 19:00:46.048 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.048 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.048 -07 000000476 INF: FPGA: Recv ZSGSRD 31126
17-03-17 19:00:46.058 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.058 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:46.058 -07 000000438 INF: FPGA: Recv ZPIEZORD 26689
17-03-17 19:00:46.068 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.068 -07 000000541 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.675 V. Piezo Error = -9.7 V.
17-03-17 19:00:46.068 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31122 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31122 (-139.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31113 (-139.4 uncal um), Max = 31128 (-139.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:00:46.068 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31122, posNoise = 6, negNoise = 9
17-03-17 19:00:46.068 -07 000000541 INF: Z Motor: After move to -0.140243, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:46.068 -07 000000541 INF: Z Motor: Settle wait time = 4541 ms, measure time = 108 ms (allowed 150 ms), total time = 4649 ms
17-03-17 19:00:46.068 -07 000000541 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:46.118 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4702 ms
17-03-17 19:00:46.118 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:46.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:46.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:46.118 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:46.118 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:46.118 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:00:46.118 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:46.118 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:46.118 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 19:00:46.148 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 19:00:46.148 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:00:46.148 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:00:46.148 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:00:46.158 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 19:00:46.158 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms.
17-03-17 19:00:46.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:00:46.208 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:00:46.408 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:00:46.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:00:46.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:00:46.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:00:46.448 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:00:46.448 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 19:00:46.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 19:00:46.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 19:00:46.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:46.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:00:46.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 19:00:46.548 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:46.548 -07 000000623 INF: Image SNR check: start
17-03-17 19:00:46.558 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:46.558 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:46.558 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:00:46.568 -07 000000623 INF: Image SNR check: pass  [peak (Max-Min)=68.12]
17-03-17 19:00:46.568 -07 000000623 INF: Autofocus start
17-03-17 19:00:46.568 -07 000000623 INF: MeasureProfile start
17-03-17 19:00:46.588 -07 000000623 INF: MeasureProfile done
17-03-17 19:00:46.588 -07 000000623 INF: X=32  Z correction [um]=0.1299841
17-03-17 19:00:46.588 -07 000000623 INF: Autofocus finished
17-03-17 19:00:46.648 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:46.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:46.758 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:00:46.758 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 19:00:46.758 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140257682287019. ----------
17-03-17 19:00:46.768 -07 000000610 INF: Cycle	20	Tile	1	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:46.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29177, sync = True, waitForSettling = True)
17-03-17 19:00:46.768 -07 000000610 INF: Z Motor: Moving to -0.133564 mm, started at -0.140258 mm, distance = 6.69 um
17-03-17 19:00:46.768 -07 000000610 INF: FPGA: Xmit ZDACW 29177\n [Z Motor]
17-03-17 19:00:46.768 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:00:46.778 -07 000000610 INF: FPGA: 'ZDACW 29177' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:46.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:46.778 -07 000000433 INF: FPGA: Recv ZDACR 29177
17-03-17 19:00:46.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30084
17-03-17 19:00:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:46.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.948 -07 000000512 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:00:46.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.958 -07 000000012 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:00:46.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.968 -07 000000551 INF: FPGA: Recv ZSGSRD 30073
17-03-17 19:00:46.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.978 -07 000000433 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:00:46.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30082
17-03-17 19:00:46.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:46.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:46.998 -07 000000541 INF: FPGA: Recv ZSGSRD 30079
17-03-17 19:00:47.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:47.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:47.008 -07 000000431 INF: FPGA: Recv ZSGSRD 30076
17-03-17 19:00:47.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:47.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:47.028 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.996267,
17-03-17 19:00:47.028 -07 000000424 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:00:47.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:47.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:47.058 -07 000000476 INF: FPGA: Recv ZSGSRD 30077
17-03-17 19:00:47.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:00:47.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:47.068 -07 000000486 INF: FPGA: Recv ZPIEZORD 25602
17-03-17 19:00:47.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:47.078 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.8 V.
17-03-17 19:00:47.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30079 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30080 (-132.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30073 (-132.7 uncal um), Max = 30084 (-132.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:00:47.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30079, posNoise = 5, negNoise = 6
17-03-17 19:00:47.078 -07 000000610 INF: Z Motor: After move to -0.133564, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:47.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-17 19:00:47.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:47.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:47.078 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:47.078 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:47.078 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:47.078 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:47.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:47.078 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:47.078 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 19:00:47.078 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:47.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:47.078 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 19:00:47.088 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:47.088 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:47.088 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:00:47.088 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 19:00:47.098 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 19:00:47.098 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:47.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:00:47.108 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:47.108 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:00:47.108 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 19:00:47.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29354 150\n [Camera]
17-03-17 19:00:47.318 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:47.708 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:47.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:47.708 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:47.718 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:47.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:47.718 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:47.718 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:47.718 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 19:00:47.718 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:47.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 19:00:47.908 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29354 782
17-03-17 19:00:48.058 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:48.098 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:00:48.098 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:00:48.098 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:48.108 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:00:48.108 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:00:48.108 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:48.108 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:48.108 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 19:00:48.108 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:48.118 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 19:00:48.248 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:48.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:48.248 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:48.248 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:48.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:48.248 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:48.358 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:48.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 19:00:48.358 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:48.358 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:00:48.438 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-17 19:00:48.438 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:48.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29354 150' command took 4 ms to send, 1318 ms to get response, and 1327 ms overall
17-03-17 19:00:48.448 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.134025
17-03-17 19:00:48.448 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13402 mm
17-03-17 19:00:48.448 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:48.448 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29278, sync = True, waitForSettling = False)
17-03-17 19:00:48.448 -07 000000382 INF: Z Motor: Moving to -0.134026 mm, started at -0.133557 mm, distance = -0.47 um
17-03-17 19:00:48.448 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 19:00:48.448 -07 000000415 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 19:00:48.458 -07 000000382 INF: FPGA: Xmit ZDACW 29278\n [Z Motor]
17-03-17 19:00:48.458 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:00:48.468 -07 000000382 INF: FPGA: 'ZDACW 29278' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:00:48.468 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:48.468 -07 000000541 INF: FPGA: Recv YRDPOS 122699
17-03-17 19:00:48.478 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:00:48.478 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:48.478 -07 000000415 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:48.478 -07 000000415 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:48.478 -07 000000415 INF: Y Motor: Moving 1330 steps2
17-03-17 19:00:48.478 -07 000000569 INF: FPGA: Recv ZDACR 29278
17-03-17 19:00:48.488 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:48.488 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 19:00:48.488 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:48.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 19:00:48.758 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 19:00:48.758 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:48.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 19:00:48.758 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:00:48.758 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:48.758 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:48.758 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 19:00:48.768 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:48.768 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 19:00:48.858 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:00:48.858 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 19:00:48.888 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:48.888 -07 000000476 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:00:48.898 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:48.898 -07 000000415 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:48.898 -07 000000415 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 19:00:48.898 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.831 mm, average velocity = 2.142 mm/sec
17-03-17 19:00:49.848 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:49.848 -07 000000476 INF: FPGA: Recv YRDPOS 124382
17-03-17 19:00:49.858 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:49.858 -07 000000415 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:49.878 -07 000000415 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:49.878 -07 000000415 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:49.878 -07 000000415 INF: Y Motor: Moved to 60.7334 after 1426 ms (table move)
17-03-17 19:00:49.878 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134026 mm (DAC = 29278)
17-03-17 19:00:49.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.878 -07 000000569 INF: FPGA: Recv ZSGSRD 30160
17-03-17 19:00:49.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:00:49.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.888 -07 000000551 INF: FPGA: Recv ZSGSRD 30147
17-03-17 19:00:49.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.898 -07 000000512 INF: FPGA: Recv ZSGSRD 30150
17-03-17 19:00:49.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.908 -07 000000608 INF: FPGA: Recv ZSGSRD 30156
17-03-17 19:00:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.918 -07 000000569 INF: FPGA: Recv ZSGSRD 30153
17-03-17 19:00:49.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.928 -07 000000623 INF: FPGA: Recv ZSGSRD 30157
17-03-17 19:00:49.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.938 -07 000000486 INF: FPGA: Recv ZSGSRD 30158
17-03-17 19:00:49.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.948 -07 000000512 INF: FPGA: Recv ZSGSRD 30151
17-03-17 19:00:49.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30145
17-03-17 19:00:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:49.968 -07 000000431 INF: FPGA: Recv ZSGSRD 30147
17-03-17 19:00:49.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:49.978 -07 000000415 INF: FPGA: Recv ZPIEZORD 25727
17-03-17 19:00:49.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:49.988 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -9.7 V.
17-03-17 19:00:49.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30152 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30152 (-133.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30145 (-133.2 uncal um), Max = 30160 (-133.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:00:49.988 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30152, posNoise = 8, negNoise = 7
17-03-17 19:00:49.988 -07 000000610 INF: Z Motor: After move to -0.134026, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:49.988 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:00:49.988 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:50.038 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 19:00:50.038 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:50.038 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.134026196509511. ----------
17-03-17 19:00:50.038 -07 000000610 INF: Cycle	20	Tile	2	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:50.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29101, sync = True, waitForSettling = True)
17-03-17 19:00:50.038 -07 000000610 INF: Z Motor: Moving to -0.133216 mm, started at -0.134026 mm, distance = 0.81 um
17-03-17 19:00:50.038 -07 000000610 INF: FPGA: Xmit ZDACW 29101\n [Z Motor]
17-03-17 19:00:50.038 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:00:50.048 -07 000000610 INF: FPGA: 'ZDACW 29101' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:50.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:50.048 -07 000000623 INF: FPGA: Recv ZDACR 29101
17-03-17 19:00:50.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.208 -07 000000541 INF: FPGA: Recv ZSGSRD 30031
17-03-17 19:00:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.218 -07 000000512 INF: FPGA: Recv ZSGSRD 30027
17-03-17 19:00:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:00:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.238 -07 000000382 INF: FPGA: Recv ZSGSRD 30029
17-03-17 19:00:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.248 -07 000000012 INF: FPGA: Recv ZSGSRD 30030
17-03-17 19:00:50.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.258 -07 000000541 INF: FPGA: Recv ZSGSRD 30026
17-03-17 19:00:50.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30020
17-03-17 19:00:50.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.278 -07 000000486 INF: FPGA: Recv ZSGSRD 30028
17-03-17 19:00:50.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.288 -07 000000561 INF: FPGA: Recv ZSGSRD 30026
17-03-17 19:00:50.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:50.298 -07 000000433 INF: FPGA: Recv ZSGSRD 30024
17-03-17 19:00:50.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:50.308 -07 000000415 INF: FPGA: Recv ZPIEZORD 25594
17-03-17 19:00:50.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:50.318 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.7 V.
17-03-17 19:00:50.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30027 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30020 (-132.4 uncal um), Max = 30031 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:00:50.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30027, posNoise = 4, negNoise = 7
17-03-17 19:00:50.318 -07 000000610 INF: Z Motor: After move to -0.133216, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:50.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:00:50.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:50.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:50.318 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:50.318 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:50.318 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:50.318 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:50.318 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:50.318 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:50.318 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:50.318 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:50.318 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:50.318 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:50.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:00:50.328 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:50.328 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:50.328 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:50.338 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:00:50.338 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:00:50.338 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:00:50.338 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:50.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29278 150\n [Camera]
17-03-17 19:00:50.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:50.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:50.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:50.938 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:50.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:50.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:50.948 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:50.948 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:50.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) start.
17-03-17 19:00:50.948 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:50.948 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2432929440, 0x0, 391868352) start.
17-03-17 19:00:51.128 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29278 782
17-03-17 19:00:51.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:51.338 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1061425200, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 19:00:51.338 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:00:51.338 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:51.338 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:51.338 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2432929440, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 19:00:51.338 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:00:51.338 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:51.338 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:51.338 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:00:51.348 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:00:51.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:51.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:51.478 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:51.478 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:51.478 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1096847464, 0x0, 391868352) start.
17-03-17 19:00:51.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:51.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:51.478 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:51.478 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:51.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1132269728, 0x0, 418435064) start.
17-03-17 19:00:51.648 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:51.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:51.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:00:51.668 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:51.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29278 150' command took 2 ms to send, 1312 ms to get response, and 1322 ms overall
17-03-17 19:00:51.668 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133925
17-03-17 19:00:51.668 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13393 mm
17-03-17 19:00:51.668 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:51.668 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 19:00:51.668 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 19:00:51.668 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:51.668 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29256, sync = True, waitForSettling = False)
17-03-17 19:00:51.668 -07 000000608 INF: Z Motor: Moving to -0.133925 mm, started at -0.133223 mm, distance = -0.70 um
17-03-17 19:00:51.678 -07 000000608 INF: FPGA: Xmit ZDACW 29256\n [Z Motor]
17-03-17 19:00:51.678 -07 000000551 INF: FPGA: Recv YRDPOS 124383
17-03-17 19:00:51.678 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:00:51.678 -07 000000382 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:51.678 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:00:51.678 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:51.678 -07 000000382 INF: Y Motor: Moving 1342 steps-19
17-03-17 19:00:51.688 -07 000000608 INF: FPGA: 'ZDACW 29256' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:00:51.688 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:51.698 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:51.698 -07 000000512 INF: FPGA: Recv ZDACR 29256
17-03-17 19:00:51.708 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:51.708 -07 000000608 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 19:00:51.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1096847464, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 19:00:51.878 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:00:51.878 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:51.878 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1132269728, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 19:00:51.878 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 19:00:51.878 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:51.888 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:51.888 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 19:00:51.888 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:51.888 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 19:00:52.058 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:00:52.058 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 19:00:52.108 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:52.108 -07 000000433 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:00:52.118 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:00:52.118 -07 000000382 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:52.118 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 19:00:52.118 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-17 19:00:52.418 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.990831,
17-03-17 19:00:53.068 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:53.068 -07 000000512 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:00:53.078 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:53.078 -07 000000382 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:53.098 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:53.098 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:53.098 -07 000000382 INF: Y Motor: Moved to 61.5645 after 1422 ms (table move)
17-03-17 19:00:53.098 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133925 mm (DAC = 29256)
17-03-17 19:00:53.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30141
17-03-17 19:00:53.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:53.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.108 -07 000000433 INF: FPGA: Recv ZSGSRD 30137
17-03-17 19:00:53.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30146
17-03-17 19:00:53.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30144
17-03-17 19:00:53.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.138 -07 000000382 INF: FPGA: Recv ZSGSRD 30132
17-03-17 19:00:53.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.148 -07 000000438 INF: FPGA: Recv ZSGSRD 30139
17-03-17 19:00:53.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.158 -07 000000433 INF: FPGA: Recv ZSGSRD 30134
17-03-17 19:00:53.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.168 -07 000000569 INF: FPGA: Recv ZSGSRD 30131
17-03-17 19:00:53.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.178 -07 000000476 INF: FPGA: Recv ZSGSRD 30129
17-03-17 19:00:53.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.188 -07 000000551 INF: FPGA: Recv ZSGSRD 30132
17-03-17 19:00:53.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:53.198 -07 000000438 INF: FPGA: Recv ZPIEZORD 25754
17-03-17 19:00:53.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.208 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.464 V. Piezo Error = -9.6 V.
17-03-17 19:00:53.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30136 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30136 (-133.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30129 (-133.1 uncal um), Max = 30146 (-133.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:00:53.208 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30136, posNoise = 10, negNoise = 7
17-03-17 19:00:53.208 -07 000000610 INF: Z Motor: After move to -0.133925, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:53.208 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 107 ms (allowed 150 ms), total time = 1531 ms
17-03-17 19:00:53.208 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:53.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 19:00:53.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:53.258 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.133923409115243. ----------
17-03-17 19:00:53.258 -07 000000610 INF: Cycle	20	Tile	3	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:53.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29079, sync = True, waitForSettling = True)
17-03-17 19:00:53.258 -07 000000610 INF: Z Motor: Moving to -0.133115 mm, started at -0.133923 mm, distance = 0.81 um
17-03-17 19:00:53.258 -07 000000610 INF: FPGA: Xmit ZDACW 29079\n [Z Motor]
17-03-17 19:00:53.258 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:00:53.268 -07 000000610 INF: FPGA: 'ZDACW 29079' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:53.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:53.268 -07 000000462 INF: FPGA: Recv ZDACR 29079
17-03-17 19:00:53.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:53.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.428 -07 000000551 INF: FPGA: Recv ZSGSRD 30017
17-03-17 19:00:53.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:53.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.438 -07 000000623 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:00:53.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.448 -07 000000569 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:00:53.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.468 -07 000000438 INF: FPGA: Recv ZSGSRD 30010
17-03-17 19:00:53.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:53.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.478 -07 000000431 INF: FPGA: Recv ZSGSRD 30010
17-03-17 19:00:53.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.488 -07 000000382 INF: FPGA: Recv ZSGSRD 30012
17-03-17 19:00:53.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.498 -07 000000551 INF: FPGA: Recv ZSGSRD 30011
17-03-17 19:00:53.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.508 -07 000000462 INF: FPGA: Recv ZSGSRD 30010
17-03-17 19:00:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.518 -07 000000012 INF: FPGA: Recv ZSGSRD 30018
17-03-17 19:00:53.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:53.528 -07 000000431 INF: FPGA: Recv ZSGSRD 30014
17-03-17 19:00:53.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:53.538 -07 000000424 INF: FPGA: Recv ZPIEZORD 25592
17-03-17 19:00:53.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:53.548 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.7 V.
17-03-17 19:00:53.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30013 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30012 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30010 (-132.3 uncal um), Max = 30018 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:00:53.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30013, posNoise = 5, negNoise = 3
17-03-17 19:00:53.548 -07 000000610 INF: Z Motor: After move to -0.133115, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:53.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 19:00:53.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:53.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:53.548 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:53.548 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:53.548 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:53.548 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:53.548 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:53.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:53.548 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 19:00:53.548 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:53.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:53.548 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:53.558 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:00:53.558 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:53.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:00:53.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:53.568 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:00:53.568 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:53.568 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:00:53.568 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:00:53.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29256 150\n [Camera]
17-03-17 19:00:53.768 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:54.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:54.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:54.168 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:54.168 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:54.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:00:54.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:54.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:54.168 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:54.168 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:54.168 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:00:54.358 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29256 782
17-03-17 19:00:54.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:54.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 19:00:54.558 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:00:54.558 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:54.568 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:54.568 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:00:54.568 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 19:00:54.568 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:00:54.568 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:54.568 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:00:54.698 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 19:00:54.698 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:54.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:54.708 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:54.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:54.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:54.708 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:54.708 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:54.708 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:00:54.708 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:54.708 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 19:00:54.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:00:54.898 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:54.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29256 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-17 19:00:54.898 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133506
17-03-17 19:00:54.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13351 mm
17-03-17 19:00:54.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:54.898 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 19:00:54.898 -07 000000486 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 19:00:54.898 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:54.898 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29164, sync = True, waitForSettling = False)
17-03-17 19:00:54.898 -07 000000438 INF: Z Motor: Moving to -0.133504 mm, started at -0.133133 mm, distance = -0.37 um
17-03-17 19:00:54.898 -07 000000476 INF: FPGA: Recv YRDPOS 126084
17-03-17 19:00:54.908 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:00:54.908 -07 000000486 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:54.908 -07 000000486 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:54.908 -07 000000486 INF: Y Motor: Moving 1341 steps-17
17-03-17 19:00:54.908 -07 000000438 INF: FPGA: Xmit ZDACW 29164\n [Z Motor]
17-03-17 19:00:54.908 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 19:00:54.918 -07 000000438 INF: FPGA: 'ZDACW 29164' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 19:00:54.918 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:54.918 -07 000000012 INF: FPGA: Recv ZDACR 29164
17-03-17 19:00:54.928 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:54.928 -07 000000438 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 19:00:54.928 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:55.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:00:55.088 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:00:55.088 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:55.088 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:00:55.088 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:00:55.088 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:55.088 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:55.098 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:00:55.098 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:00:55.098 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 19:00:55.298 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:00:55.298 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:00:55.338 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:55.338 -07 000000512 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:00:55.348 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:55.348 -07 000000486 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:55.348 -07 000000486 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:00:55.348 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 19:00:56.298 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:56.298 -07 000000512 INF: FPGA: Recv YRDPOS 127787
17-03-17 19:00:56.308 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:56.308 -07 000000486 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:56.318 -07 000000486 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:56.318 -07 000000486 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:00:56.318 -07 000000486 INF: Y Motor: Moved to 62.3960 after 1423 ms (table move)
17-03-17 19:00:56.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133504 mm (DAC = 29164)
17-03-17 19:00:56.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.328 -07 000000541 INF: FPGA: Recv ZSGSRD 30064
17-03-17 19:00:56.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:00:56.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.338 -07 000000462 INF: FPGA: Recv ZSGSRD 30078
17-03-17 19:00:56.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.348 -07 000000569 INF: FPGA: Recv ZSGSRD 30076
17-03-17 19:00:56.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.358 -07 000000415 INF: FPGA: Recv ZSGSRD 30079
17-03-17 19:00:56.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.368 -07 000000486 INF: FPGA: Recv ZSGSRD 30074
17-03-17 19:00:56.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.378 -07 000000512 INF: FPGA: Recv ZSGSRD 30069
17-03-17 19:00:56.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.388 -07 000000462 INF: FPGA: Recv ZSGSRD 30081
17-03-17 19:00:56.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.398 -07 000000608 INF: FPGA: Recv ZSGSRD 30065
17-03-17 19:00:56.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.408 -07 000000551 INF: FPGA: Recv ZSGSRD 30066
17-03-17 19:00:56.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.418 -07 000000415 INF: FPGA: Recv ZSGSRD 30073
17-03-17 19:00:56.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:56.428 -07 000000512 INF: FPGA: Recv ZPIEZORD 25692
17-03-17 19:00:56.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.438 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.6 V.
17-03-17 19:00:56.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30072 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30074 (-132.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30064 (-132.7 uncal um), Max = 30081 (-132.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:00:56.438 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30072, posNoise = 9, negNoise = 8
17-03-17 19:00:56.438 -07 000000610 INF: Z Motor: After move to -0.133504, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:56.438 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 109 ms (allowed 150 ms), total time = 1534 ms
17-03-17 19:00:56.438 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:56.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 19:00:56.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:56.488 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.133512259538171. ----------
17-03-17 19:00:56.488 -07 000000610 INF: Cycle	20	Tile	4	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:00:56.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28988, sync = True, waitForSettling = True)
17-03-17 19:00:56.488 -07 000000610 INF: Z Motor: Moving to -0.132699 mm, started at -0.133512 mm, distance = 0.81 um
17-03-17 19:00:56.488 -07 000000610 INF: FPGA: Xmit ZDACW 28988\n [Z Motor]
17-03-17 19:00:56.488 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:00:56.498 -07 000000610 INF: FPGA: 'ZDACW 28988' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:00:56.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:56.498 -07 000000486 INF: FPGA: Recv ZDACR 28988
17-03-17 19:00:56.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:00:56.648 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:00:56.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:00:56.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.658 -07 000000551 INF: FPGA: Recv ZSGSRD 29950
17-03-17 19:00:56.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:56.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.668 -07 000000623 INF: FPGA: Recv ZSGSRD 29950
17-03-17 19:00:56.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.678 -07 000000512 INF: FPGA: Recv ZSGSRD 29951
17-03-17 19:00:56.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.688 -07 000000433 INF: FPGA: Recv ZSGSRD 29950
17-03-17 19:00:56.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.698 -07 000000561 INF: FPGA: Recv ZSGSRD 29946
17-03-17 19:00:56.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.708 -07 000000608 INF: FPGA: Recv ZSGSRD 29941
17-03-17 19:00:56.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.718 -07 000000486 INF: FPGA: Recv ZSGSRD 29951
17-03-17 19:00:56.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.728 -07 000000512 INF: FPGA: Recv ZSGSRD 29952
17-03-17 19:00:56.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.738 -07 000000502 INF: FPGA: Recv ZSGSRD 29945
17-03-17 19:00:56.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:56.748 -07 000000415 INF: FPGA: Recv ZSGSRD 29947
17-03-17 19:00:56.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:56.758 -07 000000608 INF: FPGA: Recv ZPIEZORD 25517
17-03-17 19:00:56.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:56.768 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.7 V.
17-03-17 19:00:56.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29948 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29950 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29941 (-131.9 uncal um), Max = 29952 (-132.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:00:56.768 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29948, posNoise = 4, negNoise = 7
17-03-17 19:00:56.768 -07 000000610 INF: Z Motor: After move to -0.132699, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:56.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:00:56.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:56.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:56.768 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:56.768 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:56.768 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:00:56.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:56.768 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:00:56.768 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:00:56.768 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:56.768 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:00:56.768 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:00:56.768 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:00:56.778 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:00:56.778 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:00:56.778 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:00:56.778 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:00:56.788 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:00:56.788 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:56.788 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:00:56.788 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:00:56.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29164 150\n [Camera]
17-03-17 19:00:56.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:00:57.388 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:00:57.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:00:57.388 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:57.388 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:57.388 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2468482832, 0x0, 391868352) start.
17-03-17 19:00:57.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:00:57.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:00:57.398 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:57.398 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:57.398 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2503905096, 0x0, 418435064) start.
17-03-17 19:00:57.578 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29164 782
17-03-17 19:00:57.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:00:57.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2468482832, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:00:57.768 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:00:57.768 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:57.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2503905096, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:00:57.768 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:00:57.768 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:57.878 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 111 ms.
17-03-17 19:00:57.878 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 489 ms.
17-03-17 19:00:57.878 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.027603,
17-03-17 19:00:57.878 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 111 ms.
17-03-17 19:00:57.888 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-17 19:00:57.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:00:57.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:00:57.928 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:00:57.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:00:57.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:00:57.928 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:00:57.928 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:00:57.928 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:00:57.928 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:00:57.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 19:00:58.118 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:00:58.118 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:00:58.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29164 150' command took 2 ms to send, 1313 ms to get response, and 1322 ms overall
17-03-17 19:00:58.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:00:58.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132715657232592. ------
17-03-17 19:00:58.118 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:00:58.118 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13945 mm
17-03-17 19:00:58.118 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:00:58.128 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:00:58.128 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 19:00:58.128 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:00:58.128 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30462, sync = True, waitForSettling = False)
17-03-17 19:00:58.128 -07 000000541 INF: Z Motor: Moving to -0.139446 mm, started at -0.132716 mm, distance = -6.73 um
17-03-17 19:00:58.128 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 19:00:58.128 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 19:00:58.138 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:58.138 -07 000000626 INF: FPGA: Recv YRDPOS 127788
17-03-17 19:00:58.148 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:00:58.148 -07 000000438 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:58.148 -07 000000541 INF: FPGA: Xmit ZDACW 30462\n [Z Motor]
17-03-17 19:00:58.148 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 19:00:58.148 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:00:58.148 -07 000000438 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:00:58.158 -07 000000541 INF: FPGA: 'ZDACW 30462' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 19:00:58.158 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:00:58.168 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:00:58.168 -07 000000569 INF: FPGA: Recv ZDACR 30462
17-03-17 19:00:58.178 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:00:58.178 -07 000000541 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 19:00:58.308 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:00:58.308 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:00:58.308 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:58.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:00:58.308 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:00:58.308 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:00:58.318 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:58.318 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:00:58.318 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:00:58.328 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:00:58.328 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:00:58.328 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 19:00:58.528 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 19:00:58.528 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 19:00:58.568 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:58.568 -07 000000415 INF: FPGA: Recv YRDPOS 129484
17-03-17 19:00:58.578 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:00:58.578 -07 000000438 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:58.578 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:00:58.578 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.173 mm/sec
17-03-17 19:00:59.528 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:00:59.528 -07 000000415 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:00:59.538 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:00:59.538 -07 000000438 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:00:59.558 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:00:59.558 -07 000000438 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:00:59.558 -07 000000438 INF: Y Motor: Moved to 63.2251 after 1426 ms (table move)
17-03-17 19:00:59.558 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139446 mm (DAC = 30462)
17-03-17 19:00:59.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.558 -07 000000431 INF: FPGA: Recv ZSGSRD 30995
17-03-17 19:00:59.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:00:59.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.568 -07 000000476 INF: FPGA: Recv ZSGSRD 30990
17-03-17 19:00:59.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.578 -07 000000382 INF: FPGA: Recv ZSGSRD 30993
17-03-17 19:00:59.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.588 -07 000000593 INF: FPGA: Recv ZSGSRD 30991
17-03-17 19:00:59.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.598 -07 000000438 INF: FPGA: Recv ZSGSRD 31003
17-03-17 19:00:59.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30998
17-03-17 19:00:59.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.618 -07 000000476 INF: FPGA: Recv ZSGSRD 31002
17-03-17 19:00:59.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.628 -07 000000382 INF: FPGA: Recv ZSGSRD 30997
17-03-17 19:00:59.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.638 -07 000000593 INF: FPGA: Recv ZSGSRD 30990
17-03-17 19:00:59.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:00:59.648 -07 000000512 INF: FPGA: Recv ZSGSRD 30993
17-03-17 19:00:59.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.658 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:00:59.658 -07 000000608 INF: FPGA: Recv ZPIEZORD 26888
17-03-17 19:00:59.668 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:00:59.668 -07 000000462 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.648 V. Piezo Error = -9.0 V.
17-03-17 19:00:59.668 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30995 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30994 (-138.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30990 (-138.6 uncal um), Max = 31003 (-138.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:00:59.668 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30995, posNoise = 8, negNoise = 5
17-03-17 19:00:59.668 -07 000000462 INF: Z Motor: After move to -0.139446, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:00:59.668 -07 000000462 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:00:59.668 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:00:59.718 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:00:59.718 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:00:59.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:00:59.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:00:59.718 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:00:59.718 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:00:59.718 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:00:59.718 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:00:59.718 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:00:59.728 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:00:59.728 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 19:00:59.728 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:00:59.738 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 19:00:59.738 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 19:00:59.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:00:59.788 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 19:00:59.988 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 19:00:59.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 19:00:59.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:00:59.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:01:00.028 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:01:00.028 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 19:01:00.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 19:01:00.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 19:01:00.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:00.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:01:00.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 19:01:00.128 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:01:00.128 -07 000000486 INF: Autofocus start
17-03-17 19:01:00.128 -07 000000486 INF: MeasureProfile start
17-03-17 19:01:00.128 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:01:00.138 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:00.138 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:01:00.138 -07 000000486 INF: MeasureProfile done
17-03-17 19:01:00.138 -07 000000486 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:01:00.138 -07 000000486 INF: Autofocus finished
17-03-17 19:01:00.338 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:01:00.338 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:01:00.338 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139441807345016. ----------
17-03-17 19:01:00.338 -07 000000610 INF: Cycle	20	Tile	5	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:00.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28969, sync = True, waitForSettling = True)
17-03-17 19:01:00.348 -07 000000610 INF: Z Motor: Moving to -0.132612 mm, started at -0.139442 mm, distance = 6.83 um
17-03-17 19:01:00.348 -07 000000610 INF: FPGA: Xmit ZDACW 28969\n [Z Motor]
17-03-17 19:01:00.348 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:01:00.358 -07 000000610 INF: FPGA: 'ZDACW 28969' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:00.358 -07 000000593 INF: FPGA: Recv ZDACR 28969
17-03-17 19:01:00.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.518 -07 000000012 INF: FPGA: Recv ZSGSRD 29935
17-03-17 19:01:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29929
17-03-17 19:01:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.538 -07 000000512 INF: FPGA: Recv ZSGSRD 29932
17-03-17 19:01:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.548 -07 000000438 INF: FPGA: Recv ZSGSRD 29928
17-03-17 19:01:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.558 -07 000000382 INF: FPGA: Recv ZSGSRD 29935
17-03-17 19:01:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.568 -07 000000623 INF: FPGA: Recv ZSGSRD 29930
17-03-17 19:01:00.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.578 -07 000000486 INF: FPGA: Recv ZSGSRD 29928
17-03-17 19:01:00.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.588 -07 000000424 INF: FPGA: Recv ZSGSRD 29933
17-03-17 19:01:00.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.598 -07 000000438 INF: FPGA: Recv ZSGSRD 29936
17-03-17 19:01:00.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:00.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29935
17-03-17 19:01:00.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:00.618 -07 000000012 INF: FPGA: Recv ZPIEZORD 25539
17-03-17 19:01:00.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:00.628 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -9.6 V.
17-03-17 19:01:00.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29932 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29932 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29928 (-131.8 uncal um), Max = 29936 (-131.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:01:00.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29932, posNoise = 4, negNoise = 4
17-03-17 19:01:00.628 -07 000000610 INF: Z Motor: After move to -0.132612, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:00.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 19:01:00.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:00.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:00.628 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:00.628 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:00.628 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:00.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:00.628 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:00.628 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:00.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:00.628 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:00.628 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:00.628 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:00.638 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:00.638 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:00.638 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:01:00.638 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:00.648 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 19:01:00.648 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:01:00.648 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:01:00.648 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:00.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29146 150\n [Camera]
17-03-17 19:01:00.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:01.248 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:01.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:01.248 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:01.248 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:01.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1064702000, 0x0, 391868352) start.
17-03-17 19:01:01.258 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:01.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:01.258 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:01.258 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:01.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1100124264, 0x0, 418435064) start.
17-03-17 19:01:01.448 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29146 782
17-03-17 19:01:01.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:01.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1100124264, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 19:01:01.638 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:01:01.638 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:01.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1064702000, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 19:01:01.638 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:01:01.638 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:01.638 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:01.638 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:01.638 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:01:01.648 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:01.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:01.648 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 19:01:01.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:01.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:01.788 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:01.788 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:01.788 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1135546528, 0x0, 391868352) start.
17-03-17 19:01:01.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:01.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:01.788 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:01.788 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:01.788 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:01:01.978 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:01:01.978 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:01.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29146 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-17 19:01:01.978 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.133126
17-03-17 19:01:01.978 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13313 mm
17-03-17 19:01:01.978 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:01.988 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 19:01:01.988 -07 000000593 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 19:01:01.988 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:01.988 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29081, sync = True, waitForSettling = False)
17-03-17 19:01:01.988 -07 000000551 INF: Z Motor: Moving to -0.133124 mm, started at -0.132613 mm, distance = -0.51 um
17-03-17 19:01:01.988 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 19:01:01.998 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:01.998 -07 000000593 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:01.998 -07 000000593 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:01.998 -07 000000593 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:01:01.998 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:02.008 -07 000000551 INF: FPGA: Xmit ZDACW 29081\n [Z Motor]
17-03-17 19:01:02.008 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 19:01:02.018 -07 000000551 INF: FPGA: 'ZDACW 29081' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 19:01:02.018 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:02.018 -07 000000569 INF: FPGA: Recv ZDACR 29081
17-03-17 19:01:02.028 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:02.028 -07 000000551 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:01:02.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1135546528, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:01:02.168 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:01:02.168 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:02.168 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:01:02.168 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:01:02.168 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:02.168 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:02.178 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:01:02.178 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:01:02.178 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:01:02.368 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 19:01:02.368 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:01:02.408 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:02.408 -07 000000433 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:01:02.418 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:01:02.418 -07 000000593 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:02.418 -07 000000593 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 19:01:02.418 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-17 19:01:03.238 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.042558,
17-03-17 19:01:03.368 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:03.368 -07 000000486 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:01:03.378 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:03.378 -07 000000593 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:03.388 -07 000000593 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:03.388 -07 000000593 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:01:03.388 -07 000000593 INF: Y Motor: Moved to 64.0576 after 1406 ms (table move)
17-03-17 19:01:03.388 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133124 mm (DAC = 29081)
17-03-17 19:01:03.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.398 -07 000000431 INF: FPGA: Recv ZSGSRD 30016
17-03-17 19:01:03.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:01:03.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.408 -07 000000438 INF: FPGA: Recv ZSGSRD 30009
17-03-17 19:01:03.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.418 -07 000000623 INF: FPGA: Recv ZSGSRD 30016
17-03-17 19:01:03.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.428 -07 000000486 INF: FPGA: Recv ZSGSRD 30021
17-03-17 19:01:03.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.438 -07 000000512 INF: FPGA: Recv ZSGSRD 30005
17-03-17 19:01:03.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.448 -07 000000608 INF: FPGA: Recv ZSGSRD 30010
17-03-17 19:01:03.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.458 -07 000000561 INF: FPGA: Recv ZSGSRD 30005
17-03-17 19:01:03.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.468 -07 000000623 INF: FPGA: Recv ZSGSRD 30014
17-03-17 19:01:03.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.478 -07 000000382 INF: FPGA: Recv ZSGSRD 30013
17-03-17 19:01:03.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.488 -07 000000476 INF: FPGA: Recv ZSGSRD 30014
17-03-17 19:01:03.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:03.498 -07 000000608 INF: FPGA: Recv ZPIEZORD 25637
17-03-17 19:01:03.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.508 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.6 V.
17-03-17 19:01:03.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30012 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30014 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30005 (-132.3 uncal um), Max = 30021 (-132.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:01:03.508 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30012, posNoise = 9, negNoise = 7
17-03-17 19:01:03.508 -07 000000610 INF: Z Motor: After move to -0.133124, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:03.508 -07 000000610 INF: Z Motor: Settle wait time = 1407 ms, measure time = 112 ms (allowed 150 ms), total time = 1519 ms
17-03-17 19:01:03.508 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:03.548 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1561 ms
17-03-17 19:01:03.548 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:03.548 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.133126806809665. ----------
17-03-17 19:01:03.548 -07 000000610 INF: Cycle	20	Tile	6	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:03.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28905, sync = True, waitForSettling = True)
17-03-17 19:01:03.548 -07 000000610 INF: Z Motor: Moving to -0.132319 mm, started at -0.133127 mm, distance = 0.81 um
17-03-17 19:01:03.548 -07 000000610 INF: FPGA: Xmit ZDACW 28905\n [Z Motor]
17-03-17 19:01:03.548 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:01:03.558 -07 000000610 INF: FPGA: 'ZDACW 28905' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:03.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:03.558 -07 000000415 INF: FPGA: Recv ZDACR 28905
17-03-17 19:01:03.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:03.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.718 -07 000000012 INF: FPGA: Recv ZSGSRD 29889
17-03-17 19:01:03.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 19:01:03.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.728 -07 000000424 INF: FPGA: Recv ZSGSRD 29885
17-03-17 19:01:03.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:03.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.738 -07 000000502 INF: FPGA: Recv ZSGSRD 29886
17-03-17 19:01:03.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.748 -07 000000462 INF: FPGA: Recv ZSGSRD 29894
17-03-17 19:01:03.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.758 -07 000000623 INF: FPGA: Recv ZSGSRD 29883
17-03-17 19:01:03.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.768 -07 000000433 INF: FPGA: Recv ZSGSRD 29877
17-03-17 19:01:03.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.778 -07 000000486 INF: FPGA: Recv ZSGSRD 29891
17-03-17 19:01:03.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.788 -07 000000502 INF: FPGA: Recv ZSGSRD 29890
17-03-17 19:01:03.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.798 -07 000000608 INF: FPGA: Recv ZSGSRD 29887
17-03-17 19:01:03.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:03.808 -07 000000541 INF: FPGA: Recv ZSGSRD 29884
17-03-17 19:01:03.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:03.818 -07 000000415 INF: FPGA: Recv ZPIEZORD 25490
17-03-17 19:01:03.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:03.828 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.7 V.
17-03-17 19:01:03.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29887 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29886 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29877 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:01:03.828 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29887, posNoise = 7, negNoise = 10
17-03-17 19:01:03.828 -07 000000610 INF: Z Motor: After move to -0.132319, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:03.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:01:03.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:03.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:03.828 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:03.828 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:03.828 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:03.828 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:03.828 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:03.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:03.828 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:03.828 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:03.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:03.828 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:03.838 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:03.838 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:03.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:01:03.838 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:03.848 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:01:03.848 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:01:03.848 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:01:03.848 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:03.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29081 150\n [Camera]
17-03-17 19:01:04.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:04.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:04.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:04.448 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:04.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:04.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:01:04.448 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:04.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:04.448 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:04.448 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:04.448 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 19:01:04.648 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29081 784
17-03-17 19:01:04.788 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-17 19:01:04.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 19:01:04.828 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:01:04.828 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:04.828 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:01:04.828 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:01:04.828 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:04.838 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:04.838 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:01:04.838 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:04.838 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:01:04.978 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:04.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:04.988 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:04.988 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:04.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:01:04.988 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:04.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:04.988 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:04.988 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:04.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 19:01:05.178 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:05.178 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:05.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29081 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-17 19:01:05.178 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132870
17-03-17 19:01:05.178 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13287 mm
17-03-17 19:01:05.178 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:05.178 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 19:01:05.178 -07 000000551 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 19:01:05.178 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:05.178 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29026, sync = True, waitForSettling = False)
17-03-17 19:01:05.178 -07 000000626 INF: Z Motor: Moving to -0.132873 mm, started at -0.132324 mm, distance = -0.55 um
17-03-17 19:01:05.178 -07 000000424 INF: FPGA: Recv YRDPOS 131190
17-03-17 19:01:05.188 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:05.188 -07 000000551 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:05.188 -07 000000551 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:05.188 -07 000000551 INF: Y Motor: Moving 1336 steps-10
17-03-17 19:01:05.188 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:05.198 -07 000000626 INF: FPGA: Xmit ZDACW 29026\n [Z Motor]
17-03-17 19:01:05.198 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:01:05.208 -07 000000626 INF: FPGA: 'ZDACW 29026' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 19:01:05.208 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:05.208 -07 000000382 INF: FPGA: Recv ZDACR 29026
17-03-17 19:01:05.218 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:05.218 -07 000000626 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 19:01:05.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 19:01:05.368 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:01:05.368 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:05.368 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:05.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 19:01:05.368 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:01:05.368 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:05.378 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:01:05.378 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:05.378 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 19:01:05.558 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:01:05.558 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 19:01:05.588 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:05.598 -07 000000486 INF: FPGA: Recv YRDPOS 132873
17-03-17 19:01:05.608 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:05.608 -07 000000551 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:05.608 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:01:05.608 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.835 mm, average velocity = 2.209 mm/sec
17-03-17 19:01:06.558 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:06.558 -07 000000608 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:01:06.568 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:06.568 -07 000000551 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:06.588 -07 000000551 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:06.588 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:01:06.588 -07 000000551 INF: Y Motor: Moved to 64.8799 after 1404 ms (table move)
17-03-17 19:01:06.588 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132873 mm (DAC = 29026)
17-03-17 19:01:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.588 -07 000000462 INF: FPGA: Recv ZSGSRD 29969
17-03-17 19:01:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:01:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.598 -07 000000626 INF: FPGA: Recv ZSGSRD 29974
17-03-17 19:01:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.608 -07 000000424 INF: FPGA: Recv ZSGSRD 29971
17-03-17 19:01:06.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29979
17-03-17 19:01:06.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.628 -07 000000541 INF: FPGA: Recv ZSGSRD 29979
17-03-17 19:01:06.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.638 -07 000000012 INF: FPGA: Recv ZSGSRD 29977
17-03-17 19:01:06.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.648 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:06.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:06.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29977
17-03-17 19:01:06.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.658 -07 000000608 INF: FPGA: Recv ZSGSRD 29971
17-03-17 19:01:06.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29966
17-03-17 19:01:06.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.678 -07 000000012 INF: FPGA: Recv ZSGSRD 29967
17-03-17 19:01:06.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:06.688 -07 000000476 INF: FPGA: Recv ZPIEZORD 25608
17-03-17 19:01:06.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.698 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.6 V.
17-03-17 19:01:06.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29973 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29972 (-132.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29966 (-132.0 uncal um), Max = 29979 (-132.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:01:06.698 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29973, posNoise = 6, negNoise = 7
17-03-17 19:01:06.698 -07 000000610 INF: Z Motor: After move to -0.132873, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:06.698 -07 000000610 INF: Z Motor: Settle wait time = 1407 ms, measure time = 107 ms (allowed 150 ms), total time = 1514 ms
17-03-17 19:01:06.698 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:06.748 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1565 ms
17-03-17 19:01:06.748 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:06.748 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.132876262536136. ----------
17-03-17 19:01:06.748 -07 000000610 INF: Cycle	20	Tile	7	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:06.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28849, sync = True, waitForSettling = True)
17-03-17 19:01:06.748 -07 000000610 INF: Z Motor: Moving to -0.132062 mm, started at -0.132876 mm, distance = 0.81 um
17-03-17 19:01:06.748 -07 000000610 INF: FPGA: Xmit ZDACW 28849\n [Z Motor]
17-03-17 19:01:06.748 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 19:01:06.758 -07 000000610 INF: FPGA: 'ZDACW 28849' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:06.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:06.758 -07 000000462 INF: FPGA: Recv ZDACR 28849
17-03-17 19:01:06.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:06.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29848
17-03-17 19:01:06.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:06.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.928 -07 000000012 INF: FPGA: Recv ZSGSRD 29852
17-03-17 19:01:06.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.938 -07 000000476 INF: FPGA: Recv ZSGSRD 29851
17-03-17 19:01:06.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.948 -07 000000502 INF: FPGA: Recv ZSGSRD 29848
17-03-17 19:01:06.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:01:06.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.968 -07 000000541 INF: FPGA: Recv ZSGSRD 29849
17-03-17 19:01:06.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.978 -07 000000486 INF: FPGA: Recv ZSGSRD 29845
17-03-17 19:01:06.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.988 -07 000000608 INF: FPGA: Recv ZSGSRD 29844
17-03-17 19:01:06.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:06.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:06.998 -07 000000569 INF: FPGA: Recv ZSGSRD 29844
17-03-17 19:01:07.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:07.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:07.008 -07 000000382 INF: FPGA: Recv ZSGSRD 29850
17-03-17 19:01:07.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:07.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:07.018 -07 000000512 INF: FPGA: Recv ZPIEZORD 25456
17-03-17 19:01:07.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:07.028 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.6 V.
17-03-17 19:01:07.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29848 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29844 (-131.3 uncal um), Max = 29852 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:01:07.028 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29848, posNoise = 4, negNoise = 4
17-03-17 19:01:07.028 -07 000000610 INF: Z Motor: After move to -0.132062, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:07.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:01:07.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:07.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:07.028 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:07.028 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:07.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:07.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:07.028 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:07.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:01:07.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:07.028 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:07.028 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:07.028 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:07.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:07.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:07.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:07.038 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:07.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 20 ms.
17-03-17 19:01:07.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 26 ms.
17-03-17 19:01:07.058 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 21 ms.
17-03-17 19:01:07.058 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 28 ms.
17-03-17 19:01:07.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29026 150\n [Camera]
17-03-17 19:01:07.258 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:07.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:07.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:07.658 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:07.658 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:07.658 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 19:01:07.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:07.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:07.658 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:07.658 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:07.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 19:01:07.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29026 782
17-03-17 19:01:07.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:08.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:01:08.058 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:01:08.058 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:08.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 19:01:08.058 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:01:08.058 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:08.058 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:08.058 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 19:01:08.068 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:08.078 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 19:01:08.198 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:08.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:08.198 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:08.198 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:08.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 19:01:08.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:08.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:08.198 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:08.198 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:08.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 19:01:08.378 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:01:08.378 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:08.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29026 150' command took 2 ms to send, 1319 ms to get response, and 1322 ms overall
17-03-17 19:01:08.388 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132676
17-03-17 19:01:08.388 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13268 mm
17-03-17 19:01:08.388 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:08.388 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 19:01:08.388 -07 000000593 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 19:01:08.388 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 28983, sync = True, waitForSettling = False)
17-03-17 19:01:08.388 -07 000000502 INF: Z Motor: Moving to -0.132676 mm, started at -0.132073 mm, distance = -0.60 um
17-03-17 19:01:08.388 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:08.388 -07 000000561 INF: FPGA: Recv YRDPOS 132874
17-03-17 19:01:08.398 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:01:08.398 -07 000000593 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:08.398 -07 000000593 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:08.398 -07 000000593 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:01:08.398 -07 000000502 INF: FPGA: Xmit ZDACW 28983\n [Z Motor]
17-03-17 19:01:08.398 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:01:08.408 -07 000000502 INF: FPGA: 'ZDACW 28983' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:01:08.408 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:08.408 -07 000000382 INF: FPGA: Recv ZDACR 28983
17-03-17 19:01:08.418 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:08.418 -07 000000502 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 19:01:08.418 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:08.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 19:01:08.578 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 19:01:08.578 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:08.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:01:08.578 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:01:08.578 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:08.588 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:08.588 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:08.588 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:01:08.598 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:01:08.598 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.033041,
17-03-17 19:01:08.788 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:01:08.788 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 19:01:08.828 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:08.828 -07 000000415 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:01:08.838 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:01:08.838 -07 000000593 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:08.838 -07 000000593 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 19:01:08.838 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 19:01:09.788 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:09.788 -07 000000486 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:01:09.798 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:09.798 -07 000000593 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:09.818 -07 000000593 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:09.818 -07 000000593 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:01:09.818 -07 000000593 INF: Y Motor: Moved to 65.7148 after 1429 ms (table move)
17-03-17 19:01:09.818 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132676 mm (DAC = 28983)
17-03-17 19:01:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.818 -07 000000541 INF: FPGA: Recv ZSGSRD 29939
17-03-17 19:01:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:09.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.828 -07 000000626 INF: FPGA: Recv ZSGSRD 29934
17-03-17 19:01:09.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:09.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.838 -07 000000415 INF: FPGA: Recv ZSGSRD 29946
17-03-17 19:01:09.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.868 -07 000000623 INF: FPGA: Recv ZSGSRD 29947
17-03-17 19:01:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:01:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.878 -07 000000541 INF: FPGA: Recv ZSGSRD 29944
17-03-17 19:01:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.908 -07 000000433 INF: FPGA: Recv ZSGSRD 29942
17-03-17 19:01:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 19:01:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.928 -07 000000626 INF: FPGA: Recv ZSGSRD 29950
17-03-17 19:01:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.938 -07 000000593 INF: FPGA: Recv ZSGSRD 29944
17-03-17 19:01:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.948 -07 000000569 INF: FPGA: Recv ZSGSRD 29948
17-03-17 19:01:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:09.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:09.958 -07 000000462 INF: FPGA: Recv ZSGSRD 29939
17-03-17 19:01:09.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:09.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:09.968 -07 000000438 INF: FPGA: Recv ZPIEZORD 25609
17-03-17 19:01:09.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.5 V.
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29943 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29944 (-131.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29934 (-131.8 uncal um), Max = 29950 (-131.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29943, posNoise = 7, negNoise = 9
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: After move to -0.132676, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 155 ms (allowed 150 ms), total time = 1586 ms
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 19:01:09.978 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 19:01:09.978 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:09.978 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.132683536171883. ----------
17-03-17 19:01:09.978 -07 000000610 INF: Cycle	20	Tile	8	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28806, sync = True, waitForSettling = True)
17-03-17 19:01:09.978 -07 000000610 INF: Z Motor: Moving to -0.131865 mm, started at -0.132684 mm, distance = 0.82 um
17-03-17 19:01:09.978 -07 000000610 INF: FPGA: Xmit ZDACW 28806\n [Z Motor]
17-03-17 19:01:09.978 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:01:09.988 -07 000000610 INF: FPGA: 'ZDACW 28806' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:09.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:09.988 -07 000000476 INF: FPGA: Recv ZDACR 28806
17-03-17 19:01:09.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:09.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:10.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.148 -07 000000541 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:01:10.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:10.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.158 -07 000000561 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:01:10.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.168 -07 000000608 INF: FPGA: Recv ZSGSRD 29819
17-03-17 19:01:10.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.178 -07 000000415 INF: FPGA: Recv ZSGSRD 29818
17-03-17 19:01:10.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.188 -07 000000438 INF: FPGA: Recv ZSGSRD 29813
17-03-17 19:01:10.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.198 -07 000000012 INF: FPGA: Recv ZSGSRD 29817
17-03-17 19:01:10.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29815
17-03-17 19:01:10.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29816
17-03-17 19:01:10.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.228 -07 000000626 INF: FPGA: Recv ZSGSRD 29818
17-03-17 19:01:10.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:10.238 -07 000000512 INF: FPGA: Recv ZSGSRD 29815
17-03-17 19:01:10.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:10.248 -07 000000569 INF: FPGA: Recv ZPIEZORD 25445
17-03-17 19:01:10.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:10.258 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.6 V.
17-03-17 19:01:10.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29817 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29818 (-131.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29813 (-131.1 uncal um), Max = 29819 (-131.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:01:10.258 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29817, posNoise = 2, negNoise = 4
17-03-17 19:01:10.258 -07 000000610 INF: Z Motor: After move to -0.131865, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:10.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:01:10.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:10.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:10.258 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:10.258 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:10.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:10.258 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:10.258 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:10.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:10.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:10.258 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:10.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:10.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:10.268 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:10.268 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:10.268 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:01:10.268 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:10.278 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:01:10.278 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:01:10.278 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:01:10.278 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:01:10.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28983 150\n [Camera]
17-03-17 19:01:10.478 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:10.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:10.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:10.878 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:10.878 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:10.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 19:01:10.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:10.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:10.878 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:10.878 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:10.878 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 19:01:11.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28983 782
17-03-17 19:01:11.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:11.258 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 19:01:11.258 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 19:01:11.258 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:11.258 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:01:11.258 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 19:01:11.258 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:11.268 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:11.268 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:01:11.268 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:11.278 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:01:11.408 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:11.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:11.418 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:11.418 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:11.418 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 19:01:11.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:11.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:11.418 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:11.418 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:11.418 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 19:01:11.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:11.608 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:11.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28983 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-17 19:01:11.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:01:11.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131874085442021. ------
17-03-17 19:01:11.608 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:01:11.608 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13817 mm
17-03-17 19:01:11.608 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:11.618 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:01:11.618 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 19:01:11.618 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:01:11.618 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30182, sync = True, waitForSettling = False)
17-03-17 19:01:11.618 -07 000000431 INF: Z Motor: Moving to -0.138164 mm, started at -0.131874 mm, distance = -6.29 um
17-03-17 19:01:11.618 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 19:01:11.618 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 19:01:11.628 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:11.628 -07 000000476 INF: FPGA: Recv YRDPOS 134584
17-03-17 19:01:11.638 -07 000000431 INF: FPGA: Xmit ZDACW 30182\n [Z Motor]
17-03-17 19:01:11.638 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:01:11.638 -07 000000569 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:11.638 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:11.638 -07 000000569 INF: Y Motor: Moving 1340 steps-16
17-03-17 19:01:11.638 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:01:11.648 -07 000000431 INF: FPGA: 'ZDACW 30182' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:01:11.648 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:11.648 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:11.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:11.648 -07 000000476 INF: FPGA: Recv ZDACR 30182
17-03-17 19:01:11.658 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:11.658 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:11.658 -07 000000431 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 19:01:11.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 19:01:11.798 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 19:01:11.798 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:11.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:01:11.798 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 19:01:11.798 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:11.798 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:11.798 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:11.798 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 19:01:11.808 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:01:11.818 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:01:11.818 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 19:01:12.028 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 19:01:12.028 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 19:01:12.068 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:12.068 -07 000000623 INF: FPGA: Recv YRDPOS 136273
17-03-17 19:01:12.078 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:12.078 -07 000000569 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:12.078 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:01:12.078 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 19:01:13.028 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:13.028 -07 000000561 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:01:13.038 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:13.038 -07 000000569 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:13.058 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:13.058 -07 000000569 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:01:13.058 -07 000000569 INF: Y Motor: Moved to 66.5400 after 1439 ms (table move)
17-03-17 19:01:13.058 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138164 mm (DAC = 30182)
17-03-17 19:01:13.058 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.058 -07 000000415 INF: FPGA: Recv ZSGSRD 30802
17-03-17 19:01:13.068 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:13.068 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.068 -07 000000561 INF: FPGA: Recv ZSGSRD 30793
17-03-17 19:01:13.078 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.078 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.078 -07 000000626 INF: FPGA: Recv ZSGSRD 30803
17-03-17 19:01:13.088 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.088 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.088 -07 000000431 INF: FPGA: Recv ZSGSRD 30799
17-03-17 19:01:13.098 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.098 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.098 -07 000000608 INF: FPGA: Recv ZSGSRD 30807
17-03-17 19:01:13.108 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.108 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.108 -07 000000486 INF: FPGA: Recv ZSGSRD 30804
17-03-17 19:01:13.118 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.118 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.118 -07 000000561 INF: FPGA: Recv ZSGSRD 30800
17-03-17 19:01:13.128 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.128 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.128 -07 000000626 INF: FPGA: Recv ZSGSRD 30795
17-03-17 19:01:13.138 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.138 -07 000000551 INF: FPGA: Recv ZSGSRD 30790
17-03-17 19:01:13.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:13.148 -07 000000623 INF: FPGA: Recv ZSGSRD 30800
17-03-17 19:01:13.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.158 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:13.158 -07 000000476 INF: FPGA: Recv ZPIEZORD 26703
17-03-17 19:01:13.168 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.168 -07 000000424 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.605 V. Piezo Error = -9.0 V.
17-03-17 19:01:13.168 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30799 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30800 (-137.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30790 (-137.3 uncal um), Max = 30807 (-137.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:01:13.168 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30799, posNoise = 8, negNoise = 9
17-03-17 19:01:13.168 -07 000000424 INF: Z Motor: After move to -0.138164, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:13.168 -07 000000424 INF: Z Motor: Settle wait time = 1443 ms, measure time = 106 ms (allowed 150 ms), total time = 1549 ms
17-03-17 19:01:13.168 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:13.218 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 19:01:13.218 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:13.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:13.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:13.218 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:13.218 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:13.218 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:01:13.218 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:13.218 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:13.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:01:13.228 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:13.228 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:01:13.238 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:01:13.238 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:01:13.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:01:13.288 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:01:13.488 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:01:13.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:01:13.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:01:13.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539327360, 0x0, 559484976) start.
17-03-17 19:01:13.528 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:01:13.528 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 19:01:13.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 19:01:13.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539327360, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 19:01:13.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:13.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 19:01:13.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 19:01:13.628 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:01:13.628 -07 000000438 INF: Autofocus start
17-03-17 19:01:13.628 -07 000000438 INF: MeasureProfile start
17-03-17 19:01:13.628 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:01:13.638 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:13.638 -07 000000438 INF: MeasureProfile done
17-03-17 19:01:13.638 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:01:13.638 -07 000000438 INF: Autofocus finished
17-03-17 19:01:13.648 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:01:13.848 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:01:13.848 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 19:01:13.848 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.138182661765231. ----------
17-03-17 19:01:13.848 -07 000000610 INF: Cycle	20	Tile	9	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:13.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28690, sync = True, waitForSettling = True)
17-03-17 19:01:13.858 -07 000000610 INF: Z Motor: Moving to -0.131334 mm, started at -0.138183 mm, distance = 6.85 um
17-03-17 19:01:13.858 -07 000000610 INF: FPGA: Xmit ZDACW 28690\n [Z Motor]
17-03-17 19:01:13.858 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:01:13.868 -07 000000610 INF: FPGA: 'ZDACW 28690' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:13.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:13.868 -07 000000433 INF: FPGA: Recv ZDACR 28690
17-03-17 19:01:13.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:13.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:13.958 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.041198,
17-03-17 19:01:14.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29733
17-03-17 19:01:14.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:14.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.038 -07 000000623 INF: FPGA: Recv ZSGSRD 29739
17-03-17 19:01:14.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.048 -07 000000502 INF: FPGA: Recv ZSGSRD 29735
17-03-17 19:01:14.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29735
17-03-17 19:01:14.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.068 -07 000000438 INF: FPGA: Recv ZSGSRD 29735
17-03-17 19:01:14.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29729
17-03-17 19:01:14.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.088 -07 000000626 INF: FPGA: Recv ZSGSRD 29737
17-03-17 19:01:14.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.098 -07 000000431 INF: FPGA: Recv ZSGSRD 29735
17-03-17 19:01:14.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29736
17-03-17 19:01:14.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:14.118 -07 000000415 INF: FPGA: Recv ZSGSRD 29736
17-03-17 19:01:14.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:14.128 -07 000000433 INF: FPGA: Recv ZPIEZORD 25352
17-03-17 19:01:14.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:14.138 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -9.6 V.
17-03-17 19:01:14.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29735 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29735 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29729 (-130.5 uncal um), Max = 29739 (-130.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:01:14.138 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29735, posNoise = 4, negNoise = 6
17-03-17 19:01:14.138 -07 000000610 INF: Z Motor: After move to -0.131334, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:14.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:01:14.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:14.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:14.138 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:14.138 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:14.138 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:14.138 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:14.138 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:14.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:14.138 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:01:14.138 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:14.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:01:14.138 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:14.148 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:01:14.148 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:14.148 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 19:01:14.148 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:14.148 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:01:14.148 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:01:14.158 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:01:14.158 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 19:01:14.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28866 150\n [Camera]
17-03-17 19:01:14.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:14.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:14.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:14.758 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:14.758 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:14.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 19:01:14.758 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:14.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:14.758 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:14.758 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:14.758 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 19:01:14.948 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28866 782
17-03-17 19:01:15.098 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:15.128 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:01:15.128 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 19:01:15.128 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:15.128 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:01:15.128 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:01:15.128 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:15.138 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:15.138 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:15.138 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:01:15.138 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 19:01:15.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:15.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:15.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:15.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:15.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 19:01:15.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:15.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:15.288 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:15.288 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:15.288 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 19:01:15.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:15.478 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:15.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28866 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-17 19:01:15.478 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.132037
17-03-17 19:01:15.478 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13204 mm
17-03-17 19:01:15.478 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:15.488 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 28843, sync = True, waitForSettling = False)
17-03-17 19:01:15.488 -07 000000486 INF: Z Motor: Moving to -0.132035 mm, started at -0.131347 mm, distance = -0.69 um
17-03-17 19:01:15.488 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 19:01:15.488 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 19:01:15.488 -07 000000486 INF: FPGA: Xmit ZDACW 28843\n [Z Motor]
17-03-17 19:01:15.488 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:01:15.498 -07 000000486 INF: FPGA: 'ZDACW 28843' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:15.498 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:15.498 -07 000000476 INF: FPGA: Recv YRDPOS 136274
17-03-17 19:01:15.508 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:01:15.508 -07 000000623 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:15.508 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:15.508 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:01:15.508 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:15.508 -07 000000593 INF: FPGA: Recv ZDACR 28843
17-03-17 19:01:15.518 -07 000000486 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:15.518 -07 000000486 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 19:01:15.518 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:15.668 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:01:15.668 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:01:15.668 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:15.678 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:01:15.678 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:01:15.678 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:15.678 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:15.678 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:01:15.678 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:01:15.678 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 19:01:15.898 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 19:01:15.898 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 19:01:15.928 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:15.928 -07 000000551 INF: FPGA: Recv YRDPOS 137979
17-03-17 19:01:15.938 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:15.938 -07 000000623 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:15.938 -07 000000623 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 19:01:15.938 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.166 mm/sec
17-03-17 19:01:16.648 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:16.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:16.888 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:16.888 -07 000000476 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:01:16.898 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:16.898 -07 000000623 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:16.918 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.009560, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:16.918 -07 000000623 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:01:16.918 -07 000000623 INF: Y Motor: Moved to 67.3730 after 1430 ms (table move)
17-03-17 19:01:16.918 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132035 mm (DAC = 28843)
17-03-17 19:01:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.918 -07 000000626 INF: FPGA: Recv ZSGSRD 29839
17-03-17 19:01:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.928 -07 000000462 INF: FPGA: Recv ZSGSRD 29838
17-03-17 19:01:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.938 -07 000000424 INF: FPGA: Recv ZSGSRD 29845
17-03-17 19:01:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.948 -07 000000476 INF: FPGA: Recv ZSGSRD 29849
17-03-17 19:01:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:16.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29847
17-03-17 19:01:16.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.968 -07 000000569 INF: FPGA: Recv ZSGSRD 29849
17-03-17 19:01:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.978 -07 000000462 INF: FPGA: Recv ZSGSRD 29840
17-03-17 19:01:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.988 -07 000000541 INF: FPGA: Recv ZSGSRD 29834
17-03-17 19:01:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:16.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:16.998 -07 000000593 INF: FPGA: Recv ZSGSRD 29840
17-03-17 19:01:17.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29842
17-03-17 19:01:17.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:17.018 -07 000000541 INF: FPGA: Recv ZPIEZORD 25541
17-03-17 19:01:17.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.028 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.4 V.
17-03-17 19:01:17.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29842 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29841 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29849 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:01:17.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29842, posNoise = 7, negNoise = 8
17-03-17 19:01:17.028 -07 000000610 INF: Z Motor: After move to -0.132035, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:17.028 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 19:01:17.028 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:17.078 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:01:17.078 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:17.078 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.373046875, Z-position -0.132034690745565. ----------
17-03-17 19:01:17.078 -07 000000610 INF: Cycle	20	Tile	10	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:17.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28667, sync = True, waitForSettling = True)
17-03-17 19:01:17.078 -07 000000610 INF: Z Motor: Moving to -0.131229 mm, started at -0.132035 mm, distance = 0.81 um
17-03-17 19:01:17.078 -07 000000610 INF: FPGA: Xmit ZDACW 28667\n [Z Motor]
17-03-17 19:01:17.078 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 19:01:17.088 -07 000000610 INF: FPGA: 'ZDACW 28667' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:17.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:17.088 -07 000000551 INF: FPGA: Recv ZDACR 28667
17-03-17 19:01:17.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:17.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.248 -07 000000476 INF: FPGA: Recv ZSGSRD 29721
17-03-17 19:01:17.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.258 -07 000000486 INF: FPGA: Recv ZSGSRD 29719
17-03-17 19:01:17.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.268 -07 000000626 INF: FPGA: Recv ZSGSRD 29721
17-03-17 19:01:17.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29719
17-03-17 19:01:17.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.288 -07 000000415 INF: FPGA: Recv ZSGSRD 29718
17-03-17 19:01:17.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29712
17-03-17 19:01:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.308 -07 000000486 INF: FPGA: Recv ZSGSRD 29718
17-03-17 19:01:17.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.318 -07 000000626 INF: FPGA: Recv ZSGSRD 29716
17-03-17 19:01:17.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.328 -07 000000382 INF: FPGA: Recv ZSGSRD 29715
17-03-17 19:01:17.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:17.338 -07 000000551 INF: FPGA: Recv ZSGSRD 29722
17-03-17 19:01:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:17.348 -07 000000561 INF: FPGA: Recv ZPIEZORD 25337
17-03-17 19:01:17.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:17.358 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.6 V.
17-03-17 19:01:17.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29718 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29718 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29712 (-130.4 uncal um), Max = 29722 (-130.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:01:17.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29718, posNoise = 4, negNoise = 6
17-03-17 19:01:17.358 -07 000000610 INF: Z Motor: After move to -0.131229, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:17.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 19:01:17.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:17.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:17.358 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:17.358 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:17.358 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:17.358 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:17.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:17.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:17.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:01:17.358 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:17.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:17.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:17.368 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:17.368 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:17.368 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:01:17.368 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:17.368 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 19:01:17.378 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:01:17.378 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 19:01:17.378 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 19:01:17.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28843 150\n [Camera]
17-03-17 19:01:17.578 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:17.968 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:17.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:17.978 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:17.978 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:17.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 19:01:17.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:17.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:17.978 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:17.978 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:17.978 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 19:01:18.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28843 782
17-03-17 19:01:18.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:18.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:01:18.348 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:01:18.348 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:18.358 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 19:01:18.358 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 19:01:18.358 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:18.358 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:18.358 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:18.358 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:01:18.368 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:01:18.508 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:18.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:18.508 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:18.508 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:18.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 19:01:18.508 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:18.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:18.508 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:18.508 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:18.508 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-17 19:01:18.698 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:01:18.698 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:18.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28843 150' command took 2 ms to send, 1315 ms to get response, and 1322 ms overall
17-03-17 19:01:18.698 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131181
17-03-17 19:01:18.698 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13118 mm
17-03-17 19:01:18.698 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:18.698 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 19:01:18.698 -07 000000433 INF: Y Motor: Moving to 68.2126 mm, started at 67.3730 mm, delta = 0.8396 mm
17-03-17 19:01:18.698 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:18.708 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28656, sync = True, waitForSettling = False)
17-03-17 19:01:18.708 -07 000000608 INF: FPGA: Recv YRDPOS 137980
17-03-17 19:01:18.708 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:18.708 -07 000000433 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:18.708 -07 000000433 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:18.708 -07 000000433 INF: Y Motor: Moving 1343 steps-21
17-03-17 19:01:18.708 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:18.708 -07 000000438 INF: Z Motor: Moving to -0.131179 mm, started at -0.131238 mm, distance = 0.06 um
17-03-17 19:01:18.718 -07 000000438 INF: FPGA: Xmit ZDACW 28656\n [Z Motor]
17-03-17 19:01:18.718 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:01:18.728 -07 000000438 INF: FPGA: 'ZDACW 28656' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:01:18.728 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:18.728 -07 000000569 INF: FPGA: Recv ZDACR 28656
17-03-17 19:01:18.738 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:18.738 -07 000000438 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:01:18.908 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 19:01:18.908 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 19:01:18.908 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:18.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 19:01:18.908 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 19:01:18.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:18.908 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:18.908 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 19:01:18.918 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:18.918 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:01:19.088 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:01:19.088 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 19:01:19.118 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:19.118 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:01:19.128 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:19.128 -07 000000433 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:19.128 -07 000000433 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 19:01:19.128 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.221 mm/sec
17-03-17 19:01:19.318 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.004458,
17-03-17 19:01:20.078 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:20.078 -07 000000486 INF: FPGA: Recv YRDPOS 139685
17-03-17 19:01:20.088 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:20.088 -07 000000433 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:20.098 -07 000000433 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:20.098 -07 000000433 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:01:20.098 -07 000000433 INF: Y Motor: Moved to 68.2056 after 1399 ms (table move)
17-03-17 19:01:20.108 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131179 mm (DAC = 28656)
17-03-17 19:01:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.108 -07 000000512 INF: FPGA: Recv ZSGSRD 29716
17-03-17 19:01:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.118 -07 000000438 INF: FPGA: Recv ZSGSRD 29701
17-03-17 19:01:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.128 -07 000000551 INF: FPGA: Recv ZSGSRD 29708
17-03-17 19:01:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.138 -07 000000012 INF: FPGA: Recv ZSGSRD 29706
17-03-17 19:01:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.148 -07 000000623 INF: FPGA: Recv ZSGSRD 29714
17-03-17 19:01:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.158 -07 000000424 INF: FPGA: Recv ZSGSRD 29715
17-03-17 19:01:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.168 -07 000000608 INF: FPGA: Recv ZSGSRD 29712
17-03-17 19:01:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.178 -07 000000462 INF: FPGA: Recv ZSGSRD 29718
17-03-17 19:01:20.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.188 -07 000000415 INF: FPGA: Recv ZSGSRD 29707
17-03-17 19:01:20.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.198 -07 000000438 INF: FPGA: Recv ZSGSRD 29700
17-03-17 19:01:20.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:20.208 -07 000000502 INF: FPGA: Recv ZPIEZORD 25361
17-03-17 19:01:20.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.218 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.5 V.
17-03-17 19:01:20.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29710 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29710 (-130.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29700 (-130.3 uncal um), Max = 29718 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:01:20.218 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29710, posNoise = 8, negNoise = 10
17-03-17 19:01:20.218 -07 000000610 INF: Z Motor: After move to -0.131179, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:20.218 -07 000000610 INF: Z Motor: Settle wait time = 1397 ms, measure time = 109 ms (allowed 150 ms), total time = 1506 ms
17-03-17 19:01:20.218 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:20.268 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1562 ms
17-03-17 19:01:20.268 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:20.268 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.131186694742853. ----------
17-03-17 19:01:20.268 -07 000000610 INF: Cycle	20	Tile	11	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:20.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28480, sync = True, waitForSettling = True)
17-03-17 19:01:20.268 -07 000000610 INF: Z Motor: Moving to -0.130373 mm, started at -0.131187 mm, distance = 0.81 um
17-03-17 19:01:20.268 -07 000000610 INF: FPGA: Xmit ZDACW 28480\n [Z Motor]
17-03-17 19:01:20.268 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 19:01:20.278 -07 000000610 INF: FPGA: 'ZDACW 28480' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:20.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:20.278 -07 000000424 INF: FPGA: Recv ZDACR 28480
17-03-17 19:01:20.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:20.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.438 -07 000000415 INF: FPGA: Recv ZSGSRD 29580
17-03-17 19:01:20.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29583
17-03-17 19:01:20.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.458 -07 000000502 INF: FPGA: Recv ZSGSRD 29586
17-03-17 19:01:20.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29584
17-03-17 19:01:20.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.478 -07 000000433 INF: FPGA: Recv ZSGSRD 29586
17-03-17 19:01:20.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.488 -07 000000541 INF: FPGA: Recv ZSGSRD 29582
17-03-17 19:01:20.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:20.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.498 -07 000000608 INF: FPGA: Recv ZSGSRD 29579
17-03-17 19:01:20.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29589
17-03-17 19:01:20.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29579
17-03-17 19:01:20.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:20.528 -07 000000476 INF: FPGA: Recv ZSGSRD 29582
17-03-17 19:01:20.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:20.538 -07 000000561 INF: FPGA: Recv ZPIEZORD 25182
17-03-17 19:01:20.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:20.548 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.7 V.
17-03-17 19:01:20.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29583 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29579 (-129.6 uncal um), Max = 29589 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 19:01:20.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29583, posNoise = 6, negNoise = 4
17-03-17 19:01:20.548 -07 000000610 INF: Z Motor: After move to -0.130373, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:20.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:01:20.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:20.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:20.548 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:20.548 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:20.548 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:20.548 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:20.548 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:20.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:20.548 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:20.548 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:20.548 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:20.548 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:20.558 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:20.558 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:20.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:01:20.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:20.568 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:01:20.568 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:20.568 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:01:20.568 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:20.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28656 150\n [Camera]
17-03-17 19:01:20.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:21.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:21.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:21.168 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:21.168 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:21.168 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 19:01:21.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:21.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:21.178 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:21.338 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:21.338 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:01:21.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28656 782
17-03-17 19:01:21.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:21.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 19:01:21.578 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 19:01:21.578 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:21.588 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:21.588 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 19:01:21.648 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:21.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:21.708 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:21.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:21.708 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:21.708 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:01:21.708 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 19:01:21.708 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:21.708 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:21.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:21.708 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:21.708 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:21.718 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:21.718 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:01:21.718 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 544 ms.
17-03-17 19:01:21.728 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:21.728 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:01:21.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:21.898 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:21.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28656 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:01:21.898 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131053
17-03-17 19:01:21.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13105 mm
17-03-17 19:01:21.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:21.898 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 19:01:21.898 -07 000000424 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 19:01:21.898 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:21.898 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 28629, sync = True, waitForSettling = False)
17-03-17 19:01:21.898 -07 000000462 INF: Z Motor: Moving to -0.131055 mm, started at -0.130371 mm, distance = -0.68 um
17-03-17 19:01:21.908 -07 000000462 INF: FPGA: Xmit ZDACW 28629\n [Z Motor]
17-03-17 19:01:21.908 -07 000000551 INF: FPGA: Recv YRDPOS 139686
17-03-17 19:01:21.908 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:01:21.908 -07 000000424 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:21.908 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:01:21.908 -07 000000424 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:21.908 -07 000000424 INF: Y Motor: Moving 1338 steps-14
17-03-17 19:01:21.918 -07 000000462 INF: FPGA: 'ZDACW 28629' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:21.918 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:21.928 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:21.928 -07 000000512 INF: FPGA: Recv ZDACR 28629
17-03-17 19:01:21.938 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:21.938 -07 000000462 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:01:22.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 19:01:22.088 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:01:22.088 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:22.098 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:22.098 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:01:22.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 19:01:22.098 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 19:01:22.098 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:22.108 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:22.108 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 19:01:22.298 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:01:22.298 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 384 ms overall
17-03-17 19:01:22.328 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:22.328 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:01:22.338 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:22.338 -07 000000424 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:22.338 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 19:01:22.338 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 19:01:23.288 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:23.288 -07 000000476 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:01:23.298 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:23.298 -07 000000424 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:23.318 -07 000000424 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:23.318 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:01:23.318 -07 000000424 INF: Y Motor: Moved to 69.0278 after 1411 ms (table move)
17-03-17 19:01:23.318 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131055 mm (DAC = 28629)
17-03-17 19:01:23.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.318 -07 000000462 INF: FPGA: Recv ZSGSRD 29697
17-03-17 19:01:23.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:01:23.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.328 -07 000000012 INF: FPGA: Recv ZSGSRD 29689
17-03-17 19:01:23.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.338 -07 000000593 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:01:23.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.348 -07 000000561 INF: FPGA: Recv ZSGSRD 29691
17-03-17 19:01:23.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.358 -07 000000551 INF: FPGA: Recv ZSGSRD 29688
17-03-17 19:01:23.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.368 -07 000000438 INF: FPGA: Recv ZSGSRD 29697
17-03-17 19:01:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.378 -07 000000512 INF: FPGA: Recv ZSGSRD 29700
17-03-17 19:01:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.388 -07 000000424 INF: FPGA: Recv ZSGSRD 29687
17-03-17 19:01:23.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.398 -07 000000476 INF: FPGA: Recv ZSGSRD 29686
17-03-17 19:01:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29690
17-03-17 19:01:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:23.418 -07 000000623 INF: FPGA: Recv ZPIEZORD 25362
17-03-17 19:01:23.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.428 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.5 V.
17-03-17 19:01:23.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29691 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29690 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29686 (-130.3 uncal um), Max = 29700 (-130.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:01:23.428 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29691, posNoise = 9, negNoise = 5
17-03-17 19:01:23.428 -07 000000610 INF: Z Motor: After move to -0.131055, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:23.428 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 108 ms (allowed 150 ms), total time = 1521 ms
17-03-17 19:01:23.428 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:23.478 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 19:01:23.478 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:23.478 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.13106463471216. ----------
17-03-17 19:01:23.478 -07 000000610 INF: Cycle	20	Tile	12	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:23.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28452, sync = True, waitForSettling = True)
17-03-17 19:01:23.478 -07 000000610 INF: Z Motor: Moving to -0.130245 mm, started at -0.131065 mm, distance = 0.82 um
17-03-17 19:01:23.478 -07 000000610 INF: FPGA: Xmit ZDACW 28452\n [Z Motor]
17-03-17 19:01:23.478 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:01:23.488 -07 000000610 INF: FPGA: 'ZDACW 28452' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:23.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:23.488 -07 000000593 INF: FPGA: Recv ZDACR 28452
17-03-17 19:01:23.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:23.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.648 -07 000000561 INF: FPGA: Recv ZSGSRD 29558
17-03-17 19:01:23.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:23.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.658 -07 000000541 INF: FPGA: Recv ZSGSRD 29567
17-03-17 19:01:23.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.668 -07 000000476 INF: FPGA: Recv ZSGSRD 29569
17-03-17 19:01:23.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.678 -07 000000502 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:01:23.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.688 -07 000000593 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:01:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.698 -07 000000608 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:01:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.708 -07 000000623 INF: FPGA: Recv ZSGSRD 29566
17-03-17 19:01:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.718 -07 000000512 INF: FPGA: Recv ZSGSRD 29565
17-03-17 19:01:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.728 -07 000000433 INF: FPGA: Recv ZSGSRD 29562
17-03-17 19:01:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:23.738 -07 000000551 INF: FPGA: Recv ZSGSRD 29568
17-03-17 19:01:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:23.748 -07 000000593 INF: FPGA: Recv ZPIEZORD 25188
17-03-17 19:01:23.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:23.758 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.6 V.
17-03-17 19:01:23.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29565 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29565 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29558 (-129.4 uncal um), Max = 29569 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 19:01:23.758 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29565, posNoise = 4, negNoise = 7
17-03-17 19:01:23.758 -07 000000610 INF: Z Motor: After move to -0.130245, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:23.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:01:23.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:23.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:23.758 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:23.758 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:23.758 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:23.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:23.758 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:23.758 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:23.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:01:23.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:23.758 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:23.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:23.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:23.758 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:23.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:23.768 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:23.778 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:01:23.778 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:01:23.778 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:01:23.778 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:23.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28629 150\n [Camera]
17-03-17 19:01:23.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:24.378 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:24.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:24.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:24.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:24.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:24.388 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:24.488 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:24.488 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:01:24.498 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:24.498 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 19:01:24.568 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28629 782
17-03-17 19:01:24.678 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 3.989471,
17-03-17 19:01:24.718 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:24.878 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 19:01:24.878 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:01:24.878 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:24.878 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 19:01:24.878 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 19:01:24.878 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:24.878 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:24.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 19:01:24.878 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:24.888 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 19:01:24.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:24.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:24.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:24.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:24.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:24.918 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:24.918 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:24.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:01:24.918 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:24.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:01:25.108 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:25.108 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:25.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28629 150' command took 2 ms to send, 1312 ms to get response, and 1322 ms overall
17-03-17 19:01:25.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:01:25.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130255183982298. ------
17-03-17 19:01:25.108 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13665 mm
17-03-17 19:01:25.108 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:25.108 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:01:25.118 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:01:25.118 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 19:01:25.118 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29851, sync = True, waitForSettling = False)
17-03-17 19:01:25.118 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:01:25.118 -07 000000438 INF: Z Motor: Moving to -0.136649 mm, started at -0.130255 mm, distance = -6.39 um
17-03-17 19:01:25.118 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 19:01:25.118 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 19:01:25.128 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:25.128 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 19:01:25.138 -07 000000438 INF: FPGA: Xmit ZDACW 29851\n [Z Motor]
17-03-17 19:01:25.138 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 19:01:25.138 -07 000000424 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:25.138 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:25.138 -07 000000424 INF: Y Motor: Moving 1352 steps-30
17-03-17 19:01:25.138 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:01:25.148 -07 000000438 INF: FPGA: 'ZDACW 29851' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 19:01:25.148 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:25.158 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:25.158 -07 000000502 INF: FPGA: Recv ZDACR 29851
17-03-17 19:01:25.168 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:25.168 -07 000000438 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 19:01:25.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 19:01:25.298 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 19:01:25.298 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:25.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 19:01:25.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:01:25.298 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:25.298 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:25.298 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:01:25.298 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:25.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:01:25.318 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:01:25.318 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 19:01:25.518 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 19:01:25.518 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 19:01:25.558 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:25.558 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-17 19:01:25.568 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:25.568 -07 000000424 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:25.568 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 19:01:25.568 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-17 19:01:26.518 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:26.518 -07 000000502 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:01:26.528 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:26.528 -07 000000424 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:26.548 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:26.548 -07 000000424 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:01:26.548 -07 000000424 INF: Y Motor: Moved to 69.8643 after 1427 ms (table move)
17-03-17 19:01:26.548 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136649 mm (DAC = 29851)
17-03-17 19:01:26.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.548 -07 000000593 INF: FPGA: Recv ZSGSRD 30560
17-03-17 19:01:26.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:26.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.558 -07 000000486 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:01:26.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.568 -07 000000626 INF: FPGA: Recv ZSGSRD 30561
17-03-17 19:01:26.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.578 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.578 -07 000000551 INF: FPGA: Recv ZSGSRD 30566
17-03-17 19:01:26.588 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.588 -07 000000415 INF: FPGA: Recv ZSGSRD 30560
17-03-17 19:01:26.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.598 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.598 -07 000000561 INF: FPGA: Recv ZSGSRD 30559
17-03-17 19:01:26.608 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.608 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.608 -07 000000486 INF: FPGA: Recv ZSGSRD 30555
17-03-17 19:01:26.618 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.618 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.618 -07 000000626 INF: FPGA: Recv ZSGSRD 30557
17-03-17 19:01:26.628 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.628 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.628 -07 000000551 INF: FPGA: Recv ZSGSRD 30558
17-03-17 19:01:26.638 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.638 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:26.638 -07 000000415 INF: FPGA: Recv ZSGSRD 30565
17-03-17 19:01:26.648 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.648 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:26.648 -07 000000569 INF: FPGA: Recv ZPIEZORD 26514
17-03-17 19:01:26.648 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:26.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:26.658 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:26.658 -07 000000433 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.9 V.
17-03-17 19:01:26.658 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30560 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30560 (-135.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30555 (-135.8 uncal um), Max = 30566 (-135.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:01:26.658 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30560, posNoise = 6, negNoise = 5
17-03-17 19:01:26.658 -07 000000433 INF: Z Motor: After move to -0.136649, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:26.658 -07 000000433 INF: Z Motor: Settle wait time = 1431 ms, measure time = 105 ms (allowed 150 ms), total time = 1536 ms
17-03-17 19:01:26.658 -07 000000433 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:26.708 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:01:26.708 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:26.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:26.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:26.708 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:26.708 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:26.708 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:01:26.708 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:26.708 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:26.708 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:01:26.718 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:01:26.718 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:01:26.728 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 19:01:26.728 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 19:01:26.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:01:26.768 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:01:26.968 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:01:26.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:01:26.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:01:26.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:01:27.008 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:01:27.008 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 19:01:27.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 19:01:27.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:01:27.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:27.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:01:27.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:01:27.208 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:01:27.208 -07 000000623 INF: Autofocus start
17-03-17 19:01:27.208 -07 000000623 INF: MeasureProfile start
17-03-17 19:01:27.208 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:01:27.218 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:27.218 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:01:27.218 -07 000000623 INF: MeasureProfile done
17-03-17 19:01:27.218 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 19:01:27.218 -07 000000623 INF: Autofocus finished
17-03-17 19:01:27.418 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:01:27.418 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:01:27.418 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.13664727506335. ----------
17-03-17 19:01:27.418 -07 000000610 INF: Cycle	20	Tile	13	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:27.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28359, sync = True, waitForSettling = True)
17-03-17 19:01:27.428 -07 000000610 INF: Z Motor: Moving to -0.129819 mm, started at -0.136647 mm, distance = 6.83 um
17-03-17 19:01:27.428 -07 000000610 INF: FPGA: Xmit ZDACW 28359\n [Z Motor]
17-03-17 19:01:27.428 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:01:27.438 -07 000000610 INF: FPGA: 'ZDACW 28359' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:27.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:27.438 -07 000000512 INF: FPGA: Recv ZDACR 28359
17-03-17 19:01:27.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:27.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29499
17-03-17 19:01:27.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:27.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.608 -07 000000438 INF: FPGA: Recv ZSGSRD 29497
17-03-17 19:01:27.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.618 -07 000000593 INF: FPGA: Recv ZSGSRD 29499
17-03-17 19:01:27.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.628 -07 000000561 INF: FPGA: Recv ZSGSRD 29498
17-03-17 19:01:27.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.638 -07 000000431 INF: FPGA: Recv ZSGSRD 29494
17-03-17 19:01:27.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.648 -07 000000512 INF: FPGA: Recv ZSGSRD 29499
17-03-17 19:01:27.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.658 -07 000000382 INF: FPGA: Recv ZSGSRD 29499
17-03-17 19:01:27.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.668 -07 000000608 INF: FPGA: Recv ZSGSRD 29501
17-03-17 19:01:27.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.678 -07 000000593 INF: FPGA: Recv ZSGSRD 29501
17-03-17 19:01:27.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:27.688 -07 000000502 INF: FPGA: Recv ZSGSRD 29488
17-03-17 19:01:27.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:27.698 -07 000000476 INF: FPGA: Recv ZPIEZORD 25099
17-03-17 19:01:27.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:27.708 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.7 V.
17-03-17 19:01:27.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29498 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29499 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29488 (-129.0 uncal um), Max = 29501 (-129.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:01:27.708 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29498, posNoise = 3, negNoise = 10
17-03-17 19:01:27.708 -07 000000610 INF: Z Motor: After move to -0.129819, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:27.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:01:27.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:27.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:27.708 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:27.708 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:27.708 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:27.708 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:27.708 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:27.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:27.708 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:27.708 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:27.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:27.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:27.718 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:27.718 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:27.718 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:01:27.718 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:27.728 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:01:27.728 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:01:27.728 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:01:27.728 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:01:27.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28535 150\n [Camera]
17-03-17 19:01:27.938 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:28.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:28.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:28.328 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:28.328 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:28.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1064702000, 0x0, 391868352) start.
17-03-17 19:01:28.338 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:28.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:28.338 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:28.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:28.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1100124264, 0x0, 418435064) start.
17-03-17 19:01:28.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28535 782
17-03-17 19:01:28.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:28.708 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1064702000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:01:28.708 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1100124264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:01:28.708 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:01:28.708 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:28.708 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:01:28.708 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:28.718 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:28.718 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:28.718 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:01:28.718 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:01:28.868 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:28.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:28.868 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:28.868 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:28.868 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1135546528, 0x0, 391868352) start.
17-03-17 19:01:28.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:28.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:28.868 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:28.868 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:28.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 19:01:29.058 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:01:29.058 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:29.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28535 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-17 19:01:29.058 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130166
17-03-17 19:01:29.058 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13017 mm
17-03-17 19:01:29.058 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:29.058 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 19:01:29.058 -07 000000623 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 19:01:29.068 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:29.068 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 28435, sync = True, waitForSettling = False)
17-03-17 19:01:29.068 -07 000000502 INF: Z Motor: Moving to -0.130167 mm, started at -0.129825 mm, distance = -0.34 um
17-03-17 19:01:29.068 -07 000000561 INF: FPGA: Recv YRDPOS 143082
17-03-17 19:01:29.078 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:29.078 -07 000000623 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:29.078 -07 000000623 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:29.078 -07 000000623 INF: Y Motor: Moving 1341 steps-18
17-03-17 19:01:29.078 -07 000000502 INF: FPGA: Xmit ZDACW 28435\n [Z Motor]
17-03-17 19:01:29.078 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:01:29.088 -07 000000502 INF: FPGA: 'ZDACW 28435' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:29.088 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:29.088 -07 000000012 INF: FPGA: Recv ZDACR 28435
17-03-17 19:01:29.098 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:29.098 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:29.098 -07 000000502 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:01:29.248 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 19:01:29.248 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 19:01:29.248 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:29.248 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1135546528, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 19:01:29.258 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:01:29.258 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:29.258 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:29.258 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 19:01:29.258 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 19:01:29.268 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 19:01:29.468 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:01:29.468 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 19:01:29.508 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:29.508 -07 000000551 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:01:29.518 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:01:29.518 -07 000000623 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:29.518 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 19:01:29.518 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.101 mm/sec
17-03-17 19:01:30.038 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.014009,
17-03-17 19:01:30.468 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:30.468 -07 000000626 INF: FPGA: Recv YRDPOS 144771
17-03-17 19:01:30.478 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:30.478 -07 000000623 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:30.498 -07 000000623 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:30.498 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:01:30.498 -07 000000623 INF: Y Motor: Moved to 70.6890 after 1432 ms (table move)
17-03-17 19:01:30.498 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130167 mm (DAC = 28435)
17-03-17 19:01:30.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.498 -07 000000593 INF: FPGA: Recv ZSGSRD 29553
17-03-17 19:01:30.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:01:30.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.508 -07 000000502 INF: FPGA: Recv ZSGSRD 29546
17-03-17 19:01:30.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.518 -07 000000608 INF: FPGA: Recv ZSGSRD 29550
17-03-17 19:01:30.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.528 -07 000000626 INF: FPGA: Recv ZSGSRD 29555
17-03-17 19:01:30.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.538 -07 000000569 INF: FPGA: Recv ZSGSRD 29552
17-03-17 19:01:30.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.548 -07 000000382 INF: FPGA: Recv ZSGSRD 29554
17-03-17 19:01:30.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29552
17-03-17 19:01:30.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.568 -07 000000415 INF: FPGA: Recv ZSGSRD 29546
17-03-17 19:01:30.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.578 -07 000000502 INF: FPGA: Recv ZSGSRD 29549
17-03-17 19:01:30.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.588 -07 000000623 INF: FPGA: Recv ZSGSRD 29552
17-03-17 19:01:30.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:30.598 -07 000000486 INF: FPGA: Recv ZPIEZORD 25186
17-03-17 19:01:30.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.608 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.6 V.
17-03-17 19:01:30.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29551 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29552 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29546 (-129.4 uncal um), Max = 29555 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:01:30.608 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29551, posNoise = 4, negNoise = 5
17-03-17 19:01:30.608 -07 000000610 INF: Z Motor: After move to -0.130167, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:30.608 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 19:01:30.608 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:30.658 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 19:01:30.658 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:30.658 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.130165245012313. ----------
17-03-17 19:01:30.658 -07 000000610 INF: Cycle	20	Tile	14	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:30.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28258, sync = True, waitForSettling = True)
17-03-17 19:01:30.658 -07 000000610 INF: Z Motor: Moving to -0.129357 mm, started at -0.130165 mm, distance = 0.81 um
17-03-17 19:01:30.658 -07 000000610 INF: FPGA: Xmit ZDACW 28258\n [Z Motor]
17-03-17 19:01:30.658 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 19:01:30.668 -07 000000610 INF: FPGA: 'ZDACW 28258' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:30.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:30.668 -07 000000593 INF: FPGA: Recv ZDACR 28258
17-03-17 19:01:30.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:30.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.828 -07 000000382 INF: FPGA: Recv ZSGSRD 29426
17-03-17 19:01:30.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:30.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.838 -07 000000623 INF: FPGA: Recv ZSGSRD 29431
17-03-17 19:01:30.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.848 -07 000000486 INF: FPGA: Recv ZSGSRD 29420
17-03-17 19:01:30.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.858 -07 000000502 INF: FPGA: Recv ZSGSRD 29430
17-03-17 19:01:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.868 -07 000000012 INF: FPGA: Recv ZSGSRD 29424
17-03-17 19:01:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.878 -07 000000438 INF: FPGA: Recv ZSGSRD 29424
17-03-17 19:01:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.888 -07 000000424 INF: FPGA: Recv ZSGSRD 29423
17-03-17 19:01:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29422
17-03-17 19:01:30.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.908 -07 000000462 INF: FPGA: Recv ZSGSRD 29421
17-03-17 19:01:30.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:30.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29425
17-03-17 19:01:30.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:30.928 -07 000000382 INF: FPGA: Recv ZPIEZORD 25064
17-03-17 19:01:30.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:30.938 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.6 V.
17-03-17 19:01:30.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29425 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29424 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29420 (-128.5 uncal um), Max = 29431 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:01:30.938 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29425, posNoise = 6, negNoise = 5
17-03-17 19:01:30.938 -07 000000610 INF: Z Motor: After move to -0.129357, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:30.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:01:30.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:30.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:30.938 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:30.938 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:30.938 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:30.938 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:30.938 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:30.938 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:30.938 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:30.938 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:30.938 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:30.938 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:30.948 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:30.948 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:30.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:30.948 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:30.958 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 19:01:30.958 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 19:01:30.958 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 19:01:30.958 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 19:01:30.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28435 150\n [Camera]
17-03-17 19:01:31.158 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:31.558 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:31.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:31.558 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:31.558 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:31.558 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:01:31.558 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:31.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:31.558 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:31.558 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:31.558 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:01:31.648 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:31.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:31.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28435 782
17-03-17 19:01:31.898 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-17 19:01:32.018 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 462 ms.
17-03-17 19:01:32.018 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 462 ms.
17-03-17 19:01:32.018 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:32.018 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 459 ms.
17-03-17 19:01:32.018 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 461 ms.
17-03-17 19:01:32.018 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:32.018 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:32.018 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 467 ms.
17-03-17 19:01:32.028 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:32.028 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 472 ms.
17-03-17 19:01:32.088 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:32.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:32.088 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:32.088 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:32.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:32.088 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:32.098 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:32.098 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:01:32.098 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:32.098 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1064702000, 0x0, 418435064) start.
17-03-17 19:01:32.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:32.278 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:32.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28435 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-17 19:01:32.278 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.130029
17-03-17 19:01:32.288 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13003 mm
17-03-17 19:01:32.288 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:32.288 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28405, sync = True, waitForSettling = False)
17-03-17 19:01:32.288 -07 000000438 INF: Z Motor: Moving to -0.130030 mm, started at -0.129356 mm, distance = -0.67 um
17-03-17 19:01:32.288 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 19:01:32.288 -07 000000433 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 19:01:32.288 -07 000000438 INF: FPGA: Xmit ZDACW 28405\n [Z Motor]
17-03-17 19:01:32.288 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 19:01:32.298 -07 000000438 INF: FPGA: 'ZDACW 28405' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:32.298 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:32.298 -07 000000561 INF: FPGA: Recv YRDPOS 144772
17-03-17 19:01:32.308 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:32.308 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:01:32.308 -07 000000433 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:32.308 -07 000000502 INF: FPGA: Recv ZDACR 28405
17-03-17 19:01:32.308 -07 000000433 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:32.308 -07 000000433 INF: Y Motor: Moving 1349 steps-28
17-03-17 19:01:32.318 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:32.318 -07 000000438 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 19:01:32.318 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:32.478 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 19:01:32.478 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:01:32.478 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:32.478 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1064702000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 19:01:32.478 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 19:01:32.478 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:32.478 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:32.478 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 19:01:32.478 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:32.488 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 19:01:32.688 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 19:01:32.688 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:01:32.728 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:32.728 -07 000000424 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:01:32.738 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:32.738 -07 000000433 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:32.738 -07 000000433 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 19:01:32.738 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.214 mm/sec
17-03-17 19:01:33.688 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:33.688 -07 000000512 INF: FPGA: Recv YRDPOS 146472
17-03-17 19:01:33.698 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:33.698 -07 000000433 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:33.718 -07 000000433 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:33.718 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:01:33.718 -07 000000433 INF: Y Motor: Moved to 71.5195 after 1427 ms (table move)
17-03-17 19:01:33.718 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130030 mm (DAC = 28405)
17-03-17 19:01:33.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.718 -07 000000431 INF: FPGA: Recv ZSGSRD 29536
17-03-17 19:01:33.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 19:01:33.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.728 -07 000000608 INF: FPGA: Recv ZSGSRD 29524
17-03-17 19:01:33.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.738 -07 000000626 INF: FPGA: Recv ZSGSRD 29521
17-03-17 19:01:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.748 -07 000000012 INF: FPGA: Recv ZSGSRD 29534
17-03-17 19:01:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29539
17-03-17 19:01:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29535
17-03-17 19:01:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.778 -07 000000551 INF: FPGA: Recv ZSGSRD 29529
17-03-17 19:01:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.788 -07 000000502 INF: FPGA: Recv ZSGSRD 29533
17-03-17 19:01:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.798 -07 000000424 INF: FPGA: Recv ZSGSRD 29535
17-03-17 19:01:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:33.808 -07 000000608 INF: FPGA: Recv ZSGSRD 29527
17-03-17 19:01:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:33.818 -07 000000569 INF: FPGA: Recv ZPIEZORD 25169
17-03-17 19:01:33.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.828 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.6 V.
17-03-17 19:01:33.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29534 (-129.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29521 (-129.2 uncal um), Max = 29539 (-129.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 19:01:33.828 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 8, negNoise = 10
17-03-17 19:01:33.828 -07 000000610 INF: Z Motor: After move to -0.130030, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:33.828 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 19:01:33.828 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:33.878 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 19:01:33.878 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:33.878 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.130036760769478. ----------
17-03-17 19:01:33.878 -07 000000610 INF: Cycle	20	Tile	15	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:33.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28228, sync = True, waitForSettling = True)
17-03-17 19:01:33.878 -07 000000610 INF: Z Motor: Moving to -0.129220 mm, started at -0.130037 mm, distance = 0.82 um
17-03-17 19:01:33.878 -07 000000610 INF: FPGA: Xmit ZDACW 28228\n [Z Motor]
17-03-17 19:01:33.878 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 19:01:33.888 -07 000000610 INF: FPGA: 'ZDACW 28228' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:33.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:33.888 -07 000000433 INF: FPGA: Recv ZDACR 28228
17-03-17 19:01:33.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:33.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:34.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.048 -07 000000462 INF: FPGA: Recv ZSGSRD 29409
17-03-17 19:01:34.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:34.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29405
17-03-17 19:01:34.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.068 -07 000000476 INF: FPGA: Recv ZSGSRD 29403
17-03-17 19:01:34.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.078 -07 000000486 INF: FPGA: Recv ZSGSRD 29405
17-03-17 19:01:34.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.088 -07 000000569 INF: FPGA: Recv ZSGSRD 29403
17-03-17 19:01:34.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.098 -07 000000382 INF: FPGA: Recv ZSGSRD 29409
17-03-17 19:01:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29401
17-03-17 19:01:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.118 -07 000000502 INF: FPGA: Recv ZSGSRD 29402
17-03-17 19:01:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.128 -07 000000561 INF: FPGA: Recv ZSGSRD 29405
17-03-17 19:01:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:34.138 -07 000000512 INF: FPGA: Recv ZSGSRD 29403
17-03-17 19:01:34.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:34.148 -07 000000382 INF: FPGA: Recv ZPIEZORD 24993
17-03-17 19:01:34.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:34.158 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -9.7 V.
17-03-17 19:01:34.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29404 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29404 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29401 (-128.4 uncal um), Max = 29409 (-128.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 19:01:34.158 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29404, posNoise = 5, negNoise = 3
17-03-17 19:01:34.158 -07 000000610 INF: Z Motor: After move to -0.129220, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:34.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 19:01:34.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:34.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:34.158 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:34.158 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:34.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:34.158 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:34.158 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:34.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:34.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:34.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:34.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:34.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:34.168 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:01:34.168 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:34.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:34.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:34.178 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:01:34.178 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:34.178 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:01:34.178 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:34.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28405 150\n [Camera]
17-03-17 19:01:34.388 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:34.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:34.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:34.778 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:34.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:34.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:34.788 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:34.788 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:34.788 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1100124264, 0x0, 391868352) start.
17-03-17 19:01:34.798 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:34.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1135546528, 0x0, 418435064) start.
17-03-17 19:01:34.978 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28405 782
17-03-17 19:01:35.118 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:35.168 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1100124264, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 19:01:35.168 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:01:35.168 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:35.168 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1135546528, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:01:35.168 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:01:35.168 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:35.168 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:35.168 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 19:01:35.178 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:35.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:01:35.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:35.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:35.318 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:35.318 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:35.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:35.318 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:35.318 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:35.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:01:35.318 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:35.318 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 19:01:35.398 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.05755,
17-03-17 19:01:35.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:01:35.548 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:35.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28405 150' command took 2 ms to send, 1354 ms to get response, and 1364 ms overall
17-03-17 19:01:35.548 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129234
17-03-17 19:01:35.548 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12923 mm
17-03-17 19:01:35.548 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:35.548 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 19:01:35.548 -07 000000431 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 19:01:35.548 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:35.548 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 28231, sync = True, waitForSettling = False)
17-03-17 19:01:35.558 -07 000000608 INF: Z Motor: Moving to -0.129233 mm, started at -0.129221 mm, distance = -0.01 um
17-03-17 19:01:35.558 -07 000000608 INF: FPGA: Xmit ZDACW 28231\n [Z Motor]
17-03-17 19:01:35.558 -07 000000476 INF: FPGA: Recv YRDPOS 146473
17-03-17 19:01:35.558 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 19:01:35.558 -07 000000431 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:35.558 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 19:01:35.558 -07 000000431 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:35.558 -07 000000431 INF: Y Motor: Moving 1348 steps-27
17-03-17 19:01:35.568 -07 000000608 INF: FPGA: 'ZDACW 28231' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:35.568 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:35.578 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:35.578 -07 000000551 INF: FPGA: Recv ZDACR 28231
17-03-17 19:01:35.588 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:35.588 -07 000000608 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 19:01:35.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:01:35.698 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 19:01:35.698 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:35.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:01:35.698 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:01:35.698 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:35.698 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:35.708 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:35.708 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 19:01:35.708 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 19:01:35.938 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 19:01:35.938 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 19:01:35.978 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:35.988 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:01:35.988 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:01:35.988 -07 000000431 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:35.988 -07 000000431 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 19:01:35.988 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.843 mm, average velocity = 2.207 mm/sec
17-03-17 19:01:36.648 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:36.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:36.938 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:36.938 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:01:36.948 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:36.948 -07 000000431 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:36.968 -07 000000431 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:36.968 -07 000000431 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 19:01:36.968 -07 000000431 INF: Y Motor: Moved to 72.3501 after 1411 ms (table move)
17-03-17 19:01:36.968 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129233 mm (DAC = 28231)
17-03-17 19:01:36.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:36.968 -07 000000569 INF: FPGA: Recv ZSGSRD 29408
17-03-17 19:01:36.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 19:01:36.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:36.978 -07 000000415 INF: FPGA: Recv ZSGSRD 29403
17-03-17 19:01:36.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:36.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:36.988 -07 000000608 INF: FPGA: Recv ZSGSRD 29401
17-03-17 19:01:36.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:36.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:36.998 -07 000000382 INF: FPGA: Recv ZSGSRD 29408
17-03-17 19:01:37.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.008 -07 000000551 INF: FPGA: Recv ZSGSRD 29408
17-03-17 19:01:37.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.018 -07 000000502 INF: FPGA: Recv ZSGSRD 29408
17-03-17 19:01:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.028 -07 000000415 INF: FPGA: Recv ZSGSRD 29409
17-03-17 19:01:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.038 -07 000000486 INF: FPGA: Recv ZSGSRD 29408
17-03-17 19:01:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.048 -07 000000476 INF: FPGA: Recv ZSGSRD 29402
17-03-17 19:01:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.058 -07 000000551 INF: FPGA: Recv ZSGSRD 29401
17-03-17 19:01:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:37.068 -07 000000569 INF: FPGA: Recv ZPIEZORD 25014
17-03-17 19:01:37.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.078 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.6 V.
17-03-17 19:01:37.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29406 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29408 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29401 (-128.4 uncal um), Max = 29409 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 19:01:37.078 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29406, posNoise = 3, negNoise = 5
17-03-17 19:01:37.078 -07 000000610 INF: Z Motor: After move to -0.129233, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:37.078 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 107 ms (allowed 150 ms), total time = 1520 ms
17-03-17 19:01:37.078 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:37.128 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 19:01:37.128 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:37.128 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.129233734251758. ----------
17-03-17 19:01:37.128 -07 000000610 INF: Cycle	20	Tile	16	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:37.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28054, sync = True, waitForSettling = True)
17-03-17 19:01:37.128 -07 000000610 INF: Z Motor: Moving to -0.128423 mm, started at -0.129234 mm, distance = 0.81 um
17-03-17 19:01:37.128 -07 000000610 INF: FPGA: Xmit ZDACW 28054\n [Z Motor]
17-03-17 19:01:37.128 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 19:01:37.138 -07 000000610 INF: FPGA: 'ZDACW 28054' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:37.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:37.138 -07 000000541 INF: FPGA: Recv ZDACR 28054
17-03-17 19:01:37.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.298 -07 000000623 INF: FPGA: Recv ZSGSRD 29282
17-03-17 19:01:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:37.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.308 -07 000000415 INF: FPGA: Recv ZSGSRD 29284
17-03-17 19:01:37.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.318 -07 000000512 INF: FPGA: Recv ZSGSRD 29282
17-03-17 19:01:37.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.328 -07 000000433 INF: FPGA: Recv ZSGSRD 29287
17-03-17 19:01:37.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.338 -07 000000541 INF: FPGA: Recv ZSGSRD 29280
17-03-17 19:01:37.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.348 -07 000000502 INF: FPGA: Recv ZSGSRD 29283
17-03-17 19:01:37.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:37.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.358 -07 000000561 INF: FPGA: Recv ZSGSRD 29286
17-03-17 19:01:37.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.368 -07 000000608 INF: FPGA: Recv ZSGSRD 29278
17-03-17 19:01:37.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.378 -07 000000626 INF: FPGA: Recv ZSGSRD 29281
17-03-17 19:01:37.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:37.388 -07 000000486 INF: FPGA: Recv ZSGSRD 29276
17-03-17 19:01:37.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:37.398 -07 000000382 INF: FPGA: Recv ZPIEZORD 24865
17-03-17 19:01:37.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:37.408 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.7 V.
17-03-17 19:01:37.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29282 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29282 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29276 (-127.6 uncal um), Max = 29287 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:01:37.408 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29282, posNoise = 5, negNoise = 6
17-03-17 19:01:37.408 -07 000000610 INF: Z Motor: After move to -0.128423, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:37.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 19:01:37.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:37.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:37.408 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:37.408 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:37.408 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:37.408 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:37.408 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:37.408 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:37.408 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:37.408 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:37.408 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:37.408 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:37.418 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:01:37.418 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:37.418 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 19:01:37.418 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:37.428 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:01:37.428 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:01:37.428 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 19:01:37.428 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 19:01:37.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28231 150\n [Camera]
17-03-17 19:01:37.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:38.028 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:38.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:38.028 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:38.028 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:38.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:38.038 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:38.038 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:38.038 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 19:01:38.038 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:38.038 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1064702000, 0x0, 418435064) start.
17-03-17 19:01:38.218 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28231 782
17-03-17 19:01:38.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:38.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 19:01:38.408 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 19:01:38.408 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:38.408 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1064702000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 19:01:38.408 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 19:01:38.408 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:38.418 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:38.418 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:01:38.418 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:38.418 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 19:01:38.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:38.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:38.568 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:38.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:38.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:38.568 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:38.568 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:38.568 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1100124264, 0x0, 391868352) start.
17-03-17 19:01:38.568 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:38.568 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1135546528, 0x0, 418435064) start.
17-03-17 19:01:38.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:01:38.758 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:38.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28231 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-17 19:01:38.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 19:01:38.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128437131946179. ------
17-03-17 19:01:38.758 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:01:38.758 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13499 mm
17-03-17 19:01:38.758 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:38.768 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:01:38.768 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:38.768 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 19:01:38.768 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 19:01:38.768 -07 000000486 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 19:01:38.768 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29489, sync = True, waitForSettling = False)
17-03-17 19:01:38.768 -07 000000512 INF: Z Motor: Moving to -0.134992 mm, started at -0.128437 mm, distance = -6.55 um
17-03-17 19:01:38.778 -07 000000512 INF: FPGA: Xmit ZDACW 29489\n [Z Motor]
17-03-17 19:01:38.778 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 19:01:38.788 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:38.788 -07 000000512 INF: FPGA: 'ZDACW 29489' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 19:01:38.788 -07 000000438 INF: FPGA: Recv YRDPOS 148173
17-03-17 19:01:38.798 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 19:01:38.798 -07 000000486 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:38.798 -07 000000486 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:38.798 -07 000000486 INF: Y Motor: Moving 1348 steps-26
17-03-17 19:01:38.798 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:38.798 -07 000000462 INF: FPGA: Recv ZDACR 29489
17-03-17 19:01:38.808 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 19:01:38.808 -07 000000512 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 19:01:38.808 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:38.958 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1100124264, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 19:01:38.958 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 19:01:38.958 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:38.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1135546528, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 19:01:38.958 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:01:38.958 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:38.968 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:38.968 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 19:01:38.968 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 19:01:38.968 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:01:38.968 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:38.978 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 19:01:39.178 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 19:01:39.178 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 19:01:39.228 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:39.228 -07 000000476 INF: FPGA: Recv YRDPOS 149865
17-03-17 19:01:39.238 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:39.238 -07 000000486 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:39.238 -07 000000486 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 19:01:39.238 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.171 mm/sec
17-03-17 19:01:40.188 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:40.188 -07 000000626 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:01:40.198 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.198 -07 000000486 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:40.218 -07 000000486 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:40.218 -07 000000486 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:01:40.218 -07 000000486 INF: Y Motor: Moved to 73.1768 after 1449 ms (table move)
17-03-17 19:01:40.218 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134992 mm (DAC = 29489)
17-03-17 19:01:40.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.218 -07 000000541 INF: FPGA: Recv ZSGSRD 30304
17-03-17 19:01:40.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 19:01:40.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.228 -07 000000623 INF: FPGA: Recv ZSGSRD 30300
17-03-17 19:01:40.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.238 -07 000000431 INF: FPGA: Recv ZSGSRD 30302
17-03-17 19:01:40.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.248 -07 000000608 INF: FPGA: Recv ZSGSRD 30306
17-03-17 19:01:40.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.258 -07 000000486 INF: FPGA: Recv ZSGSRD 30304
17-03-17 19:01:40.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.268 -07 000000541 INF: FPGA: Recv ZSGSRD 30306
17-03-17 19:01:40.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.278 -07 000000476 INF: FPGA: Recv ZSGSRD 30303
17-03-17 19:01:40.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.288 -07 000000431 INF: FPGA: Recv ZSGSRD 30294
17-03-17 19:01:40.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.298 -07 000000561 INF: FPGA: Recv ZSGSRD 30299
17-03-17 19:01:40.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:40.308 -07 000000382 INF: FPGA: Recv ZSGSRD 30302
17-03-17 19:01:40.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.318 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:40.318 -07 000000541 INF: FPGA: Recv ZPIEZORD 26240
17-03-17 19:01:40.328 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:40.328 -07 000000433 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -8.9 V.
17-03-17 19:01:40.328 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30302 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30302 (-134.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30294 (-134.1 uncal um), Max = 30306 (-134.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:01:40.328 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30302, posNoise = 4, negNoise = 8
17-03-17 19:01:40.328 -07 000000433 INF: Z Motor: After move to -0.134992, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:40.328 -07 000000433 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-17 19:01:40.328 -07 000000433 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:40.378 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 19:01:40.378 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:40.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:40.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:40.378 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:40.378 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:40.378 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 19:01:40.378 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:40.378 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:40.378 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 19:01:40.388 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 19:01:40.388 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 19:01:40.398 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 19:01:40.398 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 19:01:40.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 19:01:40.448 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 19:01:40.648 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 19:01:40.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 19:01:40.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 19:01:40.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 19:01:40.688 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 19:01:40.688 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 19:01:40.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 19:01:40.758 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.054831,
17-03-17 19:01:40.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 19:01:40.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:40.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 19:01:40.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 19:01:40.788 -07 000000502 INF: Autofocus start
17-03-17 19:01:40.788 -07 000000502 INF: MeasureProfile start
17-03-17 19:01:40.798 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 19:01:40.798 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 19:01:40.798 -07 000000502 INF: MeasureProfile done
17-03-17 19:01:40.798 -07 000000502 INF: X=48  Z correction [um]=0.2069503
17-03-17 19:01:40.798 -07 000000502 INF: Autofocus finished
17-03-17 19:01:40.808 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 19:01:40.808 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 19:01:41.008 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 19:01:41.008 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 19:01:41.008 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134989828330776. ----------
17-03-17 19:01:41.008 -07 000000610 INF: Cycle	20	Tile	17	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:41.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28047, sync = True, waitForSettling = True)
17-03-17 19:01:41.008 -07 000000610 INF: Z Motor: Moving to -0.128391 mm, started at -0.134990 mm, distance = 6.60 um
17-03-17 19:01:41.008 -07 000000610 INF: FPGA: Xmit ZDACW 28047\n [Z Motor]
17-03-17 19:01:41.018 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 19:01:41.028 -07 000000610 INF: FPGA: 'ZDACW 28047' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:41.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:41.028 -07 000000569 INF: FPGA: Recv ZDACR 28047
17-03-17 19:01:41.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:41.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.188 -07 000000623 INF: FPGA: Recv ZSGSRD 29274
17-03-17 19:01:41.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29279
17-03-17 19:01:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.208 -07 000000382 INF: FPGA: Recv ZSGSRD 29270
17-03-17 19:01:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29282
17-03-17 19:01:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.228 -07 000000415 INF: FPGA: Recv ZSGSRD 29281
17-03-17 19:01:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.238 -07 000000438 INF: FPGA: Recv ZSGSRD 29278
17-03-17 19:01:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.258 -07 000000433 INF: FPGA: Recv ZSGSRD 29276
17-03-17 19:01:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.258 -07 000000541 INF: FPGA: Recv ZSGSRD 29280
17-03-17 19:01:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.268 -07 000000476 INF: FPGA: Recv ZSGSRD 29275
17-03-17 19:01:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:41.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29283
17-03-17 19:01:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:41.288 -07 000000438 INF: FPGA: Recv ZPIEZORD 24918
17-03-17 19:01:41.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:41.298 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.6 V.
17-03-17 19:01:41.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29278 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29278 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29270 (-127.6 uncal um), Max = 29283 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 19:01:41.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29278, posNoise = 5, negNoise = 8
17-03-17 19:01:41.298 -07 000000610 INF: Z Motor: After move to -0.128391, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:41.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 19:01:41.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:41.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:41.298 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:41.298 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:41.298 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:41.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:41.298 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:41.298 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:41.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 19:01:41.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:41.298 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:41.298 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:41.298 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 19:01:41.298 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:41.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:41.308 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:41.318 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 19:01:41.318 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 19:01:41.318 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 19:01:41.318 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:01:41.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28224 150\n [Camera]
17-03-17 19:01:41.518 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:41.648 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:41.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:41.918 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:41.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:41.918 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:41.918 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:41.918 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 19:01:41.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:41.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:41.918 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:41.918 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:41.928 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 19:01:42.108 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28224 782
17-03-17 19:01:42.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:42.298 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:01:42.298 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 19:01:42.298 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:42.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:01:42.298 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:01:42.298 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:42.308 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:42.308 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 19:01:42.308 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:42.308 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 19:01:42.458 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-17 19:01:42.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-17 19:01:42.458 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:42.578 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-17 19:01:42.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-17 19:01:42.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:42.578 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:42.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 19:01:42.588 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:42.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 19:01:42.648 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-17 19:01:42.648 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:42.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28224 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-17 19:01:42.648 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128830
17-03-17 19:01:42.648 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12883 mm
17-03-17 19:01:42.648 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:42.648 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 19:01:42.648 -07 000000476 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 19:01:42.648 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:42.648 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 28143, sync = True, waitForSettling = False)
17-03-17 19:01:42.648 -07 000000541 INF: Z Motor: Moving to -0.128830 mm, started at -0.128411 mm, distance = -0.42 um
17-03-17 19:01:42.658 -07 000000486 INF: FPGA: Recv YRDPOS 149866
17-03-17 19:01:42.658 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:42.658 -07 000000476 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:42.658 -07 000000476 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:42.658 -07 000000476 INF: Y Motor: Moving 1353 steps-33
17-03-17 19:01:42.658 -07 000000541 INF: FPGA: Xmit ZDACW 28143\n [Z Motor]
17-03-17 19:01:42.658 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 19:01:42.668 -07 000000541 INF: FPGA: 'ZDACW 28143' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 19:01:42.668 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:42.668 -07 000000502 INF: FPGA: Recv ZDACR 28143
17-03-17 19:01:42.678 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:42.678 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:42.678 -07 000000541 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 19:01:42.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 19:01:42.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 19:01:42.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:42.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:01:42.968 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 19:01:42.968 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:42.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:42.968 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:42.968 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 19:01:42.978 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 19:01:43.058 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 19:01:43.058 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 19:01:43.078 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:43.088 -07 000000593 INF: FPGA: Recv YRDPOS 151569
17-03-17 19:01:43.088 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:43.088 -07 000000476 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:43.088 -07 000000476 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 19:01:43.088 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.120 mm/sec
17-03-17 19:01:44.038 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:44.038 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:01:44.048 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:44.048 -07 000000476 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:44.058 -07 000000476 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:44.058 -07 000000476 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:01:44.058 -07 000000476 INF: Y Motor: Moved to 74.0088 after 1407 ms (table move)
17-03-17 19:01:44.058 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128830 mm (DAC = 28143)
17-03-17 19:01:44.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.068 -07 000000551 INF: FPGA: Recv ZSGSRD 29350
17-03-17 19:01:44.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 19:01:44.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.068 -07 000000382 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:01:44.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.078 -07 000000608 INF: FPGA: Recv ZSGSRD 29339
17-03-17 19:01:44.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29335
17-03-17 19:01:44.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.098 -07 000000626 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:01:44.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.108 -07 000000438 INF: FPGA: Recv ZSGSRD 29350
17-03-17 19:01:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.118 -07 000000415 INF: FPGA: Recv ZSGSRD 29348
17-03-17 19:01:44.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.128 -07 000000623 INF: FPGA: Recv ZSGSRD 29344
17-03-17 19:01:44.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.138 -07 000000541 INF: FPGA: Recv ZSGSRD 29348
17-03-17 19:01:44.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.148 -07 000000476 INF: FPGA: Recv ZSGSRD 29340
17-03-17 19:01:44.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:44.158 -07 000000551 INF: FPGA: Recv ZPIEZORD 24994
17-03-17 19:01:44.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.168 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.5 V.
17-03-17 19:01:44.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29344 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29344 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29335 (-128.0 uncal um), Max = 29350 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:01:44.168 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29344, posNoise = 6, negNoise = 9
17-03-17 19:01:44.168 -07 000000610 INF: Z Motor: After move to -0.128830, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:44.168 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 103 ms (allowed 150 ms), total time = 1512 ms
17-03-17 19:01:44.168 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:44.218 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1565 ms
17-03-17 19:01:44.218 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:44.218 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.128835433098969. ----------
17-03-17 19:01:44.218 -07 000000610 INF: Cycle	20	Tile	18	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:44.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27966, sync = True, waitForSettling = True)
17-03-17 19:01:44.218 -07 000000610 INF: Z Motor: Moving to -0.128020 mm, started at -0.128835 mm, distance = 0.82 um
17-03-17 19:01:44.218 -07 000000610 INF: FPGA: Xmit ZDACW 27966\n [Z Motor]
17-03-17 19:01:44.218 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 19:01:44.228 -07 000000610 INF: FPGA: 'ZDACW 27966' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 19:01:44.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:44.228 -07 000000623 INF: FPGA: Recv ZDACR 27966
17-03-17 19:01:44.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:44.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:44.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.388 -07 000000551 INF: FPGA: Recv ZSGSRD 29212
17-03-17 19:01:44.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:44.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.398 -07 000000382 INF: FPGA: Recv ZSGSRD 29217
17-03-17 19:01:44.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.408 -07 000000608 INF: FPGA: Recv ZSGSRD 29217
17-03-17 19:01:44.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.418 -07 000000415 INF: FPGA: Recv ZSGSRD 29219
17-03-17 19:01:44.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.428 -07 000000431 INF: FPGA: Recv ZSGSRD 29218
17-03-17 19:01:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.438 -07 000000551 INF: FPGA: Recv ZSGSRD 29220
17-03-17 19:01:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.448 -07 000000382 INF: FPGA: Recv ZSGSRD 29220
17-03-17 19:01:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29221
17-03-17 19:01:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.468 -07 000000012 INF: FPGA: Recv ZSGSRD 29217
17-03-17 19:01:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:44.478 -07 000000512 INF: FPGA: Recv ZSGSRD 29217
17-03-17 19:01:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:44.488 -07 000000569 INF: FPGA: Recv ZPIEZORD 24861
17-03-17 19:01:44.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:44.498 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.6 V.
17-03-17 19:01:44.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29218 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29218 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29212 (-127.2 uncal um), Max = 29221 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:01:44.498 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29218, posNoise = 3, negNoise = 6
17-03-17 19:01:44.498 -07 000000610 INF: Z Motor: After move to -0.128020, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:44.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 19:01:44.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:44.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:44.498 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:44.498 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:44.498 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:44.498 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:44.498 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:44.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:44.498 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 19:01:44.498 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:44.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 19:01:44.498 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:44.508 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:44.508 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:44.508 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 19:01:44.508 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:44.518 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 19:01:44.518 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:01:44.518 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 19:01:44.518 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 19:01:44.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28143 150\n [Camera]
17-03-17 19:01:44.718 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:45.118 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:45.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:45.118 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:45.118 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:45.118 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 19:01:45.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:45.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:45.118 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:45.118 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:45.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1064702000, 0x0, 418435064) start.
17-03-17 19:01:45.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28143 782
17-03-17 19:01:45.458 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:45.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 19:01:45.498 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 19:01:45.498 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:45.498 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1064702000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:01:45.498 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 19:01:45.498 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:45.498 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:45.498 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 19:01:45.508 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 19:01:45.518 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 19:01:45.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-17 19:01:45.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-17 19:01:45.658 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:45.658 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:45.658 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1100124264, 0x0, 391868352) start.
17-03-17 19:01:45.658 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-17 19:01:45.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-17 19:01:45.658 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:45.778 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:45.778 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 19:01:45.838 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:45.848 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:45.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28143 150' command took 2 ms to send, 1310 ms to get response, and 1322 ms overall
17-03-17 19:01:45.848 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.128326
17-03-17 19:01:45.848 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12833 mm
17-03-17 19:01:45.848 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 19:01:45.848 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 19:01:45.848 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28033, sync = True, waitForSettling = False)
17-03-17 19:01:45.848 -07 000000512 INF: Z Motor: Moving to -0.128327 mm, started at -0.128026 mm, distance = -0.30 um
17-03-17 19:01:45.848 -07 000000512 INF: FPGA: Xmit ZDACW 28033\n [Z Motor]
17-03-17 19:01:45.848 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 19:01:45.848 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 19:01:45.858 -07 000000512 INF: FPGA: 'ZDACW 28033' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 19:01:45.858 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:45.858 -07 000000433 INF: FPGA: Recv ZDACR 28033
17-03-17 19:01:45.868 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:45.868 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:45.868 -07 000000512 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 19:01:45.868 -07 000000424 INF: FPGA: Recv YRDPOS 151570
17-03-17 19:01:45.878 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 19:01:45.878 -07 000000569 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:45.878 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 19:01:45.878 -07 000000569 INF: Y Motor: Moving 1350 steps-29
17-03-17 19:01:45.878 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 19:01:46.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1100124264, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 19:01:46.038 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 19:01:46.038 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:46.048 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:46.048 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 19:01:46.118 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.015368,
17-03-17 19:01:46.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 19:01:46.158 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 19:01:46.158 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:46.158 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 19:01:46.168 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 19:01:46.248 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 19:01:46.248 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 19:01:46.278 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:46.278 -07 000000431 INF: FPGA: Recv YRDPOS 153257
17-03-17 19:01:46.288 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:46.288 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:46.288 -07 000000569 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 19:01:46.288 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.844 mm, average velocity = 2.226 mm/sec
17-03-17 19:01:46.648 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 19:01:46.648 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 19. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=221, R2=228, Total=449. Warn if over 250 bubbles per interval.
17-03-17 19:01:47.238 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 19:01:47.238 -07 000000608 INF: FPGA: Recv YRDPOS 153258
17-03-17 19:01:47.248 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:47.248 -07 000000569 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 19:01:47.258 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 19:01:47.258 -07 000000569 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 19:01:47.258 -07 000000569 INF: Y Motor: Moved to 74.8330 after 1410 ms (table move)
17-03-17 19:01:47.258 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128327 mm (DAC = 28033)
17-03-17 19:01:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.268 -07 000000462 INF: FPGA: Recv ZSGSRD 29261
17-03-17 19:01:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 19:01:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29272
17-03-17 19:01:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 19:01:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.278 -07 000000476 INF: FPGA: Recv ZSGSRD 29257
17-03-17 19:01:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.288 -07 000000415 INF: FPGA: Recv ZSGSRD 29261
17-03-17 19:01:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.298 -07 000000433 INF: FPGA: Recv ZSGSRD 29263
17-03-17 19:01:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.308 -07 000000382 INF: FPGA: Recv ZSGSRD 29271
17-03-17 19:01:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.318 -07 000000551 INF: FPGA: Recv ZSGSRD 29270
17-03-17 19:01:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.328 -07 000000626 INF: FPGA: Recv ZSGSRD 29270
17-03-17 19:01:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.338 -07 000000438 INF: FPGA: Recv ZSGSRD 29266
17-03-17 19:01:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.348 -07 000000569 INF: FPGA: Recv ZSGSRD 29265
17-03-17 19:01:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:47.358 -07 000000462 INF: FPGA: Recv ZPIEZORD 24915
17-03-17 19:01:47.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.368 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.6 V.
17-03-17 19:01:47.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29266 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29266 (-127.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29257 (-127.5 uncal um), Max = 29272 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 19:01:47.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29266, posNoise = 6, negNoise = 9
17-03-17 19:01:47.368 -07 000000610 INF: Z Motor: After move to -0.128327, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:47.368 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 102 ms (allowed 150 ms), total time = 1515 ms
17-03-17 19:01:47.368 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 19:01:47.418 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 19:01:47.418 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 19:01:47.418 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.128334344551911. ----------
17-03-17 19:01:47.418 -07 000000610 INF: Cycle	20	Tile	19	Exposure Settings		A	397	G	191	T	191	C	397
17-03-17 19:01:47.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27856, sync = True, waitForSettling = True)
17-03-17 19:01:47.418 -07 000000610 INF: Z Motor: Moving to -0.127517 mm, started at -0.128334 mm, distance = 0.82 um
17-03-17 19:01:47.428 -07 000000610 INF: FPGA: Xmit ZDACW 27856\n [Z Motor]
17-03-17 19:01:47.428 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 19:01:47.438 -07 000000610 INF: FPGA: 'ZDACW 27856' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 19:01:47.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 19:01:47.438 -07 000000462 INF: FPGA: Recv ZDACR 27856
17-03-17 19:01:47.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 19:01:47.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.598 -07 000000569 INF: FPGA: Recv ZSGSRD 29137
17-03-17 19:01:47.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 19:01:47.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.608 -07 000000433 INF: FPGA: Recv ZSGSRD 29137
17-03-17 19:01:47.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.618 -07 000000476 INF: FPGA: Recv ZSGSRD 29138
17-03-17 19:01:47.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.628 -07 000000438 INF: FPGA: Recv ZSGSRD 29149
17-03-17 19:01:47.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.638 -07 000000561 INF: FPGA: Recv ZSGSRD 29142
17-03-17 19:01:47.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.648 -07 000000415 INF: FPGA: Recv ZSGSRD 29137
17-03-17 19:01:47.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.658 -07 000000593 INF: FPGA: Recv ZSGSRD 29146
17-03-17 19:01:47.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.668 -07 000000623 INF: FPGA: Recv ZSGSRD 29139
17-03-17 19:01:47.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29134
17-03-17 19:01:47.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 19:01:47.688 -07 000000424 INF: FPGA: Recv ZSGSRD 29136
17-03-17 19:01:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 19:01:47.698 -07 000000512 INF: FPGA: Recv ZPIEZORD 24758
17-03-17 19:01:47.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:47.708 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -9.6 V.
17-03-17 19:01:47.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29140 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29138 (-126.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29134 (-126.7 uncal um), Max = 29149 (-126.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 19:01:47.708 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29140, posNoise = 9, negNoise = 6
17-03-17 19:01:47.708 -07 000000610 INF: Z Motor: After move to -0.127517, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 19:01:47.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 19:01:47.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 19:01:47.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 19:01:47.708 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 19:01:47.708 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 19:01:47.708 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 19:01:47.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 19:01:47.708 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 19:01:47.708 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 19:01:47.708 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 19:01:47.708 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 19:01:47.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 19:01:47.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 19:01:47.718 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 19:01:47.718 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 19:01:47.718 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 19:01:47.718 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 19:01:47.728 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 19:01:47.728 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 19:01:47.728 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 19:01:47.728 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 19:01:47.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28033 150\n [Camera]
17-03-17 19:01:47.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 19:01:48.328 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-17 19:01:48.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-17 19:01:48.328 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:48.338 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-17 19:01:48.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-17 19:01:48.338 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:48.338 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:48.338 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1135546528, 0x0, 418435064) start.
17-03-17 19:01:48.338 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:48.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1064702000, 0x0, 391868352) start.
17-03-17 19:01:48.528 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28033 782
17-03-17 19:01:48.668 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-17 19:01:48.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1135546528, 0x0, 418435064) end. Duration was 412 ms.
17-03-17 19:01:48.748 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 19:01:48.748 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:48.748 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:48.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1064702000, 0x0, 391868352) end. Duration was 415 ms.
17-03-17 19:01:48.758 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 19:01:48.758 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:48.758 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 426 ms.
17-03-17 19:01:48.758 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:48.758 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 429 ms.
17-03-17 19:01:48.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-17 19:01:48.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-17 19:01:48.868 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 19:01:48.868 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 19:01:48.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 19:01:48.868 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-17 19:01:48.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-17 19:01:48.868 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 19:01:48.868 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 19:01:48.868 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 19:01:49.058 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-17 19:01:49.058 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 19:01:49.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28033 150' command took 2 ms to send, 1313 ms to get response, and 1322 ms overall
17-03-17 19:01:49.248 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 19:01:49.258 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 19:01:49.258 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:49.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 19:01:49.258 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 19:01:49.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 19:01:49.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 19:01:49.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 19:01:49.268 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 19:01:49.268 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 19:01:49.268 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 19:01:49.308 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 19:01:49.308 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 19:01:49.348 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 19:01:49.358 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 19:01:49.358 -07 000000610 INF: Imaging Cycle 20: ScanTilesCommand Cycle 20 time end. Duration was 137840 ms.
17-03-17 19:01:49.358 -07 000000610 INF: =================== Cycle #20 ===================
17-03-17 19:01:49.368 -07 000000610 INF: ===================  ===================
17-03-17 19:01:49.368 -07 000000593 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 19:01:49.368 -07 000000486 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 19:01:49.378 -07 000000593 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 19:01:49.378 -07 000000593 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 19:01:49.378 -07 000000593 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 20, FrontChillerTemperature: 4.015368, FrontChillerHeatSinkTemperature: 0.168879, AmbientTemperature: 18.89575, FlowCellCompartmentTemperature: 21.98528, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.88169, GreenLEDSensorTemperature: 24.82492, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 19:01:49.378 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.